brainsmatics 1.0.48 → 1.0.50

package/.storybook/middleware.js

@@ -15,9 +15,9 @@ module.exports = function expressMiddleware(router) {
     router.use(
         "/app-api/up-api",
         createProxyMiddleware("/app-api/up-api",{
-            target: "http://atlas.brainsmatics.org/app-api/up-api/",
+            // target: "http://atlas.brainsmatics.org/app-api/up-api/",
 
-            // target: "http://mouse.brains-atlas.org",
+            target: "http://192.168.70.115:3000",
             pathRewrite: {
                 '^/app-api/up-api': '',  // 将路径中的 /api 重写为空字符串
             },

package/.vscode/settings.json

@@ -0,0 +1,3 @@
+{
+    "typescript.tsdk": "node_modules/typescript/lib"
+}

package/Dockerfile

@@ -1,19 +1,18 @@
 # 使用 Node.js 18 的 Alpine 版本作为基础镜像
-FROM node:18-alpine
+FROM node:19-alpine
 
 # 设置工作目录
 WORKDIR /app
 
 # 复制 package.json 和 yarn.lock
-COPY package.json yarn.lock ./
+COPY package.json .
 
 # 安装项目依赖
 RUN yarn install --frozen-lockfile --ignore-scripts
 # 复制项目文件
-COPY . .
 
 # 暴露应用运行的端口
 EXPOSE 6006
 
 # 启动应用
-CMD ["yarn", "run", "storybook"]
+# CMD ["yarn", "run", "storybook"]

package/docker-compose.yml

@@ -6,6 +6,6 @@ services:
     ports:
       - "6006:6006"
     volumes:
-      - .:/app
+      - /opt/brain_ui:/app
       - /app/node_modules
     command: tail -f /dev/null

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "brainsmatics",
-  "version": "1.0.48",
+  "version": "1.0.50",
   "description": "brainsmatics",
   "author": "ygwang",
   "license": "MIT",
@@ -15,23 +15,30 @@
     "react-dom": ">=18.0.0"
   },
   "dependencies": {
+    "@ant-design/x": "^1.1.0",
     "@babel/preset-react": "7.22.15",
     "@rollup/plugin-typescript": "11.1.5",
     "@storybook/addon-console": "^3.0.0",
     "@types/echarts": "^4.9.22",
     "@types/three": "0.157.2",
-    "antd": "^5.19.2",
+    "antd": "^5.24.6",
     "cross-env": "7.0.3",
+    "dompurify": "^3.2.5",
     "echarts": "^5.5.1",
     "geotiff": "^2.1.3",
     "http-proxy-middleware": "^2.0.6",
     "i18next": "^24.0.4",
+    "markdown-it": "^14.1.0",
     "react": "18.x",
     "react-contexify": "^6.0.0",
     "react-dom": "18.x",
     "react-i18next": "^15.1.3",
+    "react-markdown": "^10.1.0",
     "react-scroll": "^1.9.0",
+    "react-syntax-highlighter": "^15.6.1",
     "react-window": "^1.8.9",
+    "rehype-raw": "^7.0.0",
+    "remark-gfm": "^4.0.1",
     "socket.io-client": "^4.8.1",
     "three": "0.157.0",
     "tiff": "^6.0.0",

package/dist/App.d.ts

@@ -1,4 +0,0 @@
-import './App.css';
-import React from 'react';
-declare const App: () => React.JSX.Element;
-export default App;

package/dist/basedecoder-0503cc54.js

@@ -1 +0,0 @@
-"use strict";function l(o,e){let t=o.length-e,r=0;do{for(let a=e;a>0;a--)o[r+e]+=o[r],r++;t-=e}while(t>0)}function d(o,e,t){let r=0,a=o.length;const i=a/t;for(;a>e;){for(let n=e;n>0;--n)o[r+e]+=o[r],++r;a-=e}const s=o.slice();for(let n=0;n<i;++n)for(let c=0;c<t;++c)o[t*n+c]=s[(t-c-1)*i+n]}function f(o,e,t,r,a,i){if(!e||e===1)return o;for(let c=0;c<a.length;++c){if(a[c]%8!==0)throw new Error("When decoding with predictor, only multiple of 8 bits are supported.");if(a[c]!==a[0])throw new Error("When decoding with predictor, all samples must have the same size.")}const s=a[0]/8,n=i===2?1:a.length;for(let c=0;c<r&&!(c*n*t*s>=o.byteLength);++c){let h;if(e===2){switch(a[0]){case 8:h=new Uint8Array(o,c*n*t*s,n*t*s);break;case 16:h=new Uint16Array(o,c*n*t*s,n*t*s/2);break;case 32:h=new Uint32Array(o,c*n*t*s,n*t*s/4);break;default:throw new Error(`Predictor 2 not allowed with ${a[0]} bits per sample.`)}l(h,n)}else e===3&&(h=new Uint8Array(o,c*n*t*s,n*t*s),d(h,n,s))}return o}class g{async decode(e,t){const r=await this.decodeBlock(t),a=e.Predictor||1;if(a!==1){const i=!e.StripOffsets,s=i?e.TileWidth:e.ImageWidth,n=i?e.TileLength:e.RowsPerStrip||e.ImageLength;return f(r,a,s,n,e.BitsPerSample,e.PlanarConfiguration)}return r}}exports.BaseDecoder=g;

package/dist/basedecoder-11034ec6.mjs

@@ -1,89 +0,0 @@
-function l(o, n) {
-  let t = o.length - n, r = 0;
-  do {
-    for (let a = n; a > 0; a--)
-      o[r + n] += o[r], r++;
-    t -= n;
-  } while (t > 0);
-}
-function d(o, n, t) {
-  let r = 0, a = o.length;
-  const i = a / t;
-  for (; a > n; ) {
-    for (let e = n; e > 0; --e)
-      o[r + n] += o[r], ++r;
-    a -= n;
-  }
-  const s = o.slice();
-  for (let e = 0; e < i; ++e)
-    for (let c = 0; c < t; ++c)
-      o[t * e + c] = s[(t - c - 1) * i + e];
-}
-function f(o, n, t, r, a, i) {
-  if (!n || n === 1)
-    return o;
-  for (let c = 0; c < a.length; ++c) {
-    if (a[c] % 8 !== 0)
-      throw new Error("When decoding with predictor, only multiple of 8 bits are supported.");
-    if (a[c] !== a[0])
-      throw new Error("When decoding with predictor, all samples must have the same size.");
-  }
-  const s = a[0] / 8, e = i === 2 ? 1 : a.length;
-  for (let c = 0; c < r && !(c * e * t * s >= o.byteLength); ++c) {
-    let h;
-    if (n === 2) {
-      switch (a[0]) {
-        case 8:
-          h = new Uint8Array(
-            o,
-            c * e * t * s,
-            e * t * s
-          );
-          break;
-        case 16:
-          h = new Uint16Array(
-            o,
-            c * e * t * s,
-            e * t * s / 2
-          );
-          break;
-        case 32:
-          h = new Uint32Array(
-            o,
-            c * e * t * s,
-            e * t * s / 4
-          );
-          break;
-        default:
-          throw new Error(`Predictor 2 not allowed with ${a[0]} bits per sample.`);
-      }
-      l(h, e);
-    } else
-      n === 3 && (h = new Uint8Array(
-        o,
-        c * e * t * s,
-        e * t * s
-      ), d(h, e, s));
-  }
-  return o;
-}
-class g {
-  async decode(n, t) {
-    const r = await this.decodeBlock(t), a = n.Predictor || 1;
-    if (a !== 1) {
-      const i = !n.StripOffsets, s = i ? n.TileWidth : n.ImageWidth, e = i ? n.TileLength : n.RowsPerStrip || n.ImageLength;
-      return f(
-        r,
-        a,
-        s,
-        e,
-        n.BitsPerSample,
-        n.PlanarConfiguration
-      );
-    }
-    return r;
-  }
-}
-export {
-  g as B
-};

package/dist/component/2d/config.d.ts

@@ -1,40 +0,0 @@
-export declare const config: {
-    x: number;
-    y: number;
-    z: number;
-};
-export declare const rotate: {
-    x: number;
-    y: number;
-    z: number;
-};
-export declare const zif = true;
-export declare const distribution = true;
-export declare const items: {
-    label: string;
-    key: string;
-}[];
-export declare const menu: {
-    label: string;
-    key: string;
-}[];
-export declare const ZifData: {
-    Width: number;
-    Height: number;
-    voxelResolution: number;
-    Coronal: {
-        count: number;
-        zif_start: string;
-        zif_end: string;
-    };
-    Sagittal: {
-        count: number;
-        zif_start: string;
-        zif_end: string;
-    };
-    Horizontal: {
-        count: number;
-        zif_start: string;
-        zif_end: string;
-    };
-};

package/dist/component/2d/contextmenu/ContextMenuX.d.ts

@@ -1,3 +0,0 @@
-import React from "react";
-declare const App: React.FC;
-export default App;

package/dist/component/2d/distribution/index.d.ts

@@ -1,4 +0,0 @@
-import React from "react";
-import "./index.css";
-declare const Distribution: React.FC;
-export default Distribution;

package/dist/component/2d/gridviewer/index.d.ts

@@ -1,9 +0,0 @@
-import React from 'react';
-import './index.css';
-declare const GridViewer: ({ orgX, orgY, ZifData, setMouse }: {
-    orgX: number;
-    orgY: number;
-    ZifData: any;
-    setMouse: React.Dispatch<React.SetStateAction<number[]>>;
-}) => React.JSX.Element;
-export default GridViewer;

package/dist/component/2d/gridviewer/index1.d.ts

@@ -1,8 +0,0 @@
-import React from "react";
-import "./index.css";
-declare const GridViewer: React.MemoExoticComponent<({ isGridViewer, setMouse, ZifData }: {
-    isGridViewer: boolean;
-    setMouse: React.Dispatch<React.SetStateAction<number[]>>;
-    ZifData: any;
-}) => React.JSX.Element | null>;
-export default GridViewer;

package/dist/component/2d/index.d.ts

@@ -1,9 +0,0 @@
-export { default as GridViewer } from "./gridviewer";
-export { default as NavTree } from "./navtree";
-export { default as NaviGation } from "./navigation";
-export { default as InfoDiv } from "./infodiv";
-export { default as TwoViewer } from "./twoviewer";
-export { default as Thumbnail } from "./thumbnail";
-export { default as MulfiViewer } from "./mulifiveiewer";
-export { default as Distribution } from "./distribution";
-export { default as Z } from "./js/index.js";

package/dist/component/2d/infodiv/index.d.ts

@@ -1,7 +0,0 @@
-import React from "react";
-declare const InfoDiv: ({ mouse, hovername, CurrentLevel }: {
-    mouse: number[];
-    hovername: string;
-    CurrentLevel: number;
-}) => React.JSX.Element;
-export default InfoDiv;

package/dist/component/2d/js/index.d.ts

@@ -1,3 +0,0 @@
-
-declare const Z: any;
-export default Z;