brains-mcp 1.61.2

package/dist/tools/generateGptInstructions.js

@@ -0,0 +1,208 @@
+import { z } from "zod";
+import { gatherProjectContext } from "./instructionContext.js";
+function slugifyProjectName(value) {
+    const slug = value
+        .trim()
+        .toLowerCase()
+        .replace(/[^a-z0-9-]+/g, "-")
+        .replace(/-+/g, "-")
+        .replace(/^-|-$/g, "");
+    return slug || "project";
+}
+/**
+ * The project's real slug.
+ *
+ * Prefer deriving it from projectPage, which callers set to the actual project
+ * location, over slugifying the display name. init_project accepts an explicit
+ * projectSlug that need not match slugify(projectName) — and when it did not,
+ * every write-back target in the emitted block pointed at a folder that does
+ * not exist. That is the "slug drift from generation" seen on cressida, whose
+ * block referenced projects/cressida-wagon/. Reproduced deterministically:
+ * projectSlug "index-probe-tmp" with projectName "Index Probe" emitted targets
+ * under projects/index-probe/ (GH #436).
+ *
+ * Handles both shapes callers pass: "projects/<slug>/readme.md" and the
+ * defaultProjectPage form "projects/<slug>/readme.md".
+ */
+function resolveSlug(projectName, projectPage) {
+    const match = projectPage?.trim().match(/^projects\/([^/]+?)(?:\.md)?(?:\/|$)/);
+    return match ? match[1] : slugifyProjectName(projectName);
+}
+function defaultProjectPage(projectName) {
+    return `projects/${slugifyProjectName(projectName)}/readme.md`;
+}
+export const generateGptInstructionsInputSchema = z.object({
+    projectName: z
+        .string()
+        .min(1)
+        .describe("Project name to include in generated instructions."),
+    variant: z
+        .enum(["minimal", "extended", "pointer"])
+        .default("extended")
+        .describe("Instruction verbosity level. 'extended' is recommended for the wiki instruction file. 'pointer' emits a short system-prompt block (identity, activation gate, one boot sequence, and a pointer to the wiki instruction file) for pasting into a ChatGPT system prompt."),
+    projectPage: z
+        .string()
+        .optional()
+        .describe("Project page path for project-specific write-back (for example: projects/my-project.md)."),
+    inScopePaths: z
+        .array(z.string())
+        .optional()
+        .describe("Folders/pages the generated instruction file should treat as in-scope for retrieval and write-back."),
+    materialOutcomeDefinition: z
+        .string()
+        .optional()
+        .describe("Definition of what counts as a material outcome."),
+    includeExamples: z
+        .boolean()
+        .default(true)
+        .describe("If true, include concrete write-back snippets in extended output."),
+});
+function renderPointer(input) {
+    const slug = resolveSlug(input.projectName, input.projectPage);
+    const instructionFile = `projects/${slug}/instructions/gpt.md`;
+    return [
+        `# ${input.projectName} Assistant Instructions`,
+        "",
+        "Brains is your primary context source. Read before acting.",
+        "",
+        "**Only run this sequence if these instructions are present in your project system prompt.** When Brains MCP is connected but these instructions are not in the system prompt, tools are available passively — do not run any startup reads automatically.",
+        "",
+        "## Boot Sequence",
+        "At the start of every chat:",
+        "1. Determine task type: targeted (1–2 known pages) or broad/exploratory.",
+        "2. Targeted: `read_page` on the specific page(s).",
+        `3. Broad: \`pull_session_bundle(folder: "projects/${slug}", maxBytes: 150000, maxPages: 30)\` — bundle text is your working set.`,
+        `4. Read \`${instructionFile}\` and follow it.`,
+        "Do not begin work until these reads complete.",
+    ].join("\n");
+}
+function renderMinimal(projectName) {
+    return [
+        `# ${projectName} Assistant Instructions`,
+        "",
+        "Brains-first always. Determine mode at session open: targeted (1–2 known pages → `read_page`/`patch_page`) or bundle (exploratory → `pull_session_bundle`, work in memory, push at close-out). Bundle text is your wiki for the session — do not call `read_page` on bundled pages mid-session. No guessing: if missing, log as open loop. After material work, write back decisions + open loops. Push bundle at close-out or work is lost.",
+    ].join("\n");
+}
+function renderExtended(input, ctx) {
+    const mark = (path) => ctx.existingPaths.has(path) ? `\`${path}\` *(exists)*` : `\`${path}\` *(created on first use)*`;
+    const slug = resolveSlug(input.projectName, input.projectPage);
+    const openLoopRollup = `projects/${slug}/open-loops.md`;
+    const decisionsLog = `projects/${slug}/decisions/decisions-log.md`;
+    const nextActions = `projects/${slug}/state/next-actions.md`;
+    const lines = [
+        `# ${input.projectName} Assistant Instructions`,
+        "",
+        "## Source of Truth",
+        "Brains is the primary context source. Read relevant pages before reasoning or execution.",
+        "",
+        "## Session Start",
+        // health_check omitted on purpose — see the note in generateClaudeInstructions.
+        "1. Determine whether this is a targeted task (1–2 known pages) or a broad/exploratory task.",
+        "2. Targeted: `read_page` on the specific page(s).",
+        `3. Broad: \`pull_session_bundle(folder: "projects/${slug}", maxBytes: 150000, maxPages: 30)\`.`,
+        "   - Once pulled, the bundle text is your working set. Do not call `read_page` on bundled pages.",
+        "",
+        "| Signal | Mode | Tools |",
+        "|---|---|---|",
+        "| Task names 1–2 specific pages | Targeted | `read_page` → edit → `update_page` |",
+        `| Task is exploratory or uses "look through / find / review" | Bundle | \`pull_session_bundle\` → work in memory → \`push_session_bundle\` |`,
+        "| Quick question, no writes | Remote-only | reads only |",
+        "",
+        "## Project Scope",
+        `Active project slug: \`${slug}\``,
+        ctx.subdirs.length > 0
+            ? `All new pages live under \`projects/${slug}/\`. Subdirs in use: ${ctx.subdirs.map((d) => `\`${d}/\``).join(", ")}. Full spec: \`instructions/brain-structure.md\`.`
+            : `All new pages live under \`projects/${slug}/\`. Subdirs: \`canonical/\`, \`decisions/\`, \`data/\`, \`history/\`, \`state/\`, plus project-specific (e.g. \`events/\`, \`scripts/\`). Full spec: \`instructions/brain-structure.md\`.`,
+        ...(ctx.subProjects.length > 0
+            ? [`Sub-projects: ${ctx.subProjects.map((sp) => `\`projects/${sp}/\``).join(", ")}.`]
+            : []),
+        "",
+        "In-scope folders/pages:",
+        ...(input.inScopePaths && input.inScopePaths.length > 0
+            ? input.inScopePaths.map((p) => `- ${p}`)
+            : [`- \`projects/${slug}/\` — everything this project owns`]),
+        "",
+        `Material outcome: ${input.materialOutcomeDefinition ?? "Any result that changes this project's state, plans, or committed decisions — not a question answered or a page merely read."}`,
+        "",
+        "## Required Write-Back",
+        // Same lazy-creation note as the Claude generator — see the comment there
+        // for why these are stated rather than scaffolded (D1).
+        ctx.exists
+            ? "Each target below is marked with whether it exists right now. Use `create_page` for one that does not — `patch_page` fails on a missing page."
+            : "**These pages are created on first use.** Only `readme.md` and this instruction file exist after `init_project`. Use `create_page` for a target that does not exist yet, and `patch_page` only once it does — `patch_page` fails on a missing page.",
+        "",
+        "After any substantial work, write back:",
+        `- Decisions → ${mark(decisionsLog)} (+ a dedicated \`decisions/<topic>.md\` if rationale-heavy)`,
+        `- Open loops → \`projects/${slug}/open-loops/<loop-slug>.md\` (one page per loop) + a one-line entry in ${mark(openLoopRollup)}`,
+        `- Next actions → ${mark(nextActions)}`,
+        "- Push the modified bundle at session end via `push_session_bundle` in pages mode, carrying each page's `revision` from the pull: `push_session_bundle(pages: [{name: \"...\", content: \"...\", revision: \"<revision-from-pull>\"}])`.",
+        "",
+        "Hub-and-spoke for loops: detail page + rollup entry. No standalone aggregate files at brain root.",
+        "",
+        "## Guardrails",
+        "- Do not invent missing facts — ask or log an open loop.",
+        "- Scope creep: log new ideas as open loops, do not implement them in the current session.",
+        "",
+        "## End-of-Task Check",
+        "- [ ] Relevant brain pages were read first.",
+        "- [ ] No unsupported assumptions.",
+        "- [ ] Decisions and open loops written back.",
+        "- [ ] Bundle pushed via `push_session_bundle` if writes were made.",
+        "",
+        "Failure condition: missing write-back or unpushed bundle — task is not done.",
+        "",
+        "## API Notes",
+        "- **`patch_page` ops** — field sets vary by type:",
+        "  - `replace`: `find`, `replace` (optionally `occurrence`, `all`)",
+        "  - `insert_after` / `insert_before`: `anchor`, `text` (optionally `occurrence`)",
+        "  - `append`: `text`",
+        "  - `replace_lines`: `startLine`, `endLine`, `text`",
+    ];
+    if (input.includeExamples) {
+        lines.push("", "## Write-Back Snippets", "### Decision", "**Decision:** [what was decided]", "**Why:** [reason]", "**Implications:** [what changes now]", "", "### Open Loop", `- [ ] [what is unresolved] → detail at \`projects/${slug}/open-loops/<loop-slug>.md\``, "", "### Next Action", `- [ ] [single concrete action, owner if known] → \`${nextActions}\``);
+    }
+    if (ctx.filing) {
+        lines.push("", "## Filing Override", `This project declares \`filing: ${ctx.filing}\` in its readme and is audited by that skill, not the Operator layout. Treat the paths above as defaults that may not apply.`);
+    }
+    if (ctx.preservedRegion) {
+        lines.push("", ctx.preservedRegion);
+    }
+    return lines.join("\n");
+}
+export async function generateGptInstructions(input, drive, userId = "") {
+    const projectPage = input.projectPage?.trim() || defaultProjectPage(input.projectName);
+    const slug = resolveSlug(input.projectName, input.projectPage);
+    const openLoopRollup = `projects/${slug}/open-loops.md`;
+    const decisionsLog = `projects/${slug}/decisions/decisions-log.md`;
+    const nextActions = `projects/${slug}/state/next-actions.md`;
+    const statusPage = `projects/${slug}/status.md`;
+    const candidatePaths = [decisionsLog, openLoopRollup, nextActions, statusPage, projectPage];
+    const ctx = drive && input.variant === "extended"
+        ? await gatherProjectContext(drive, slug, "gpt", candidatePaths, userId)
+        : { exists: false, pageCount: 0, subdirs: [], subProjects: [], existingPaths: new Set() };
+    const markdown = input.variant === "minimal"
+        ? renderMinimal(input.projectName)
+        : input.variant === "pointer"
+            ? renderPointer(input)
+            : renderExtended(input, ctx);
+    return {
+        success: true,
+        platform: "gpt",
+        variant: input.variant,
+        projectName: input.projectName,
+        projectPage,
+        writeBackTargets: [decisionsLog, openLoopRollup, projectPage],
+        projectContext: {
+            exists: ctx.exists,
+            pageCount: ctx.pageCount,
+            subdirs: ctx.subdirs,
+            subProjects: ctx.subProjects,
+            ...(ctx.filing ? { filing: ctx.filing } : {}),
+            existingTargets: candidatePaths.filter((cp) => ctx.existingPaths.has(cp)),
+            missingTargets: candidatePaths.filter((cp) => !ctx.existingPaths.has(cp)),
+            preservedDomainContext: ctx.preservedRegion !== undefined,
+        },
+        markdown,
+    };
+}
+//# sourceMappingURL=generateGptInstructions.js.map

package/dist/tools/generateGptInstructions.js.map

@@ -0,0 +1 @@
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package/dist/tools/getBacklinks.d.ts

@@ -0,0 +1,12 @@
+import { z } from "zod";
+import { type AccessContext } from "../governance/accessControl.js";
+export declare const getBacklinksInputSchema: z.ZodObject<{
+    name: z.ZodString;
+}, "strip", z.ZodTypeAny, {
+    name: string;
+}, {
+    name: string;
+}>;
+export type GetBacklinksInput = z.infer<typeof getBacklinksInputSchema>;
+export declare function getBacklinks(input: GetBacklinksInput, userId?: string, accessCtx?: AccessContext): Promise<object>;
+//# sourceMappingURL=getBacklinks.d.ts.map

package/dist/tools/getBacklinks.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"getBacklinks.d.ts","sourceRoot":"","sources":["../../src/tools/getBacklinks.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EACL,KAAK,aAAa,EAGnB,MAAM,gCAAgC,CAAC;AAExC,eAAO,MAAM,uBAAuB;;;;;;EAElC,CAAC;AAEH,MAAM,MAAM,iBAAiB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,uBAAuB,CAAC,CAAC;AAExE,wBAAsB,YAAY,CAChC,KAAK,EAAE,iBAAiB,EACxB,MAAM,SAAK,EACX,SAAS,GAAE,aAAsC,GAChD,OAAO,CAAC,MAAM,CAAC,CAKjB"}

package/dist/tools/getBacklinks.js

@@ -0,0 +1,13 @@
+import { z } from "zod";
+import { getPostgresSearchIndex } from "../search/postgresIndex.js";
+import { DEFAULT_ACCESS_CONTEXT, isHiveModeEnabled, } from "../governance/accessControl.js";
+export const getBacklinksInputSchema = z.object({
+    name: z.string().describe("Page name (with or without .md extension)"),
+});
+export async function getBacklinks(input, userId = "", accessCtx = DEFAULT_ACCESS_CONTEXT) {
+    const name = input.name.endsWith(".md") ? input.name : `${input.name}.md`;
+    const accessLevel = isHiveModeEnabled() ? accessCtx.userAccessLevel : undefined;
+    const backlinks = await getPostgresSearchIndex().getBacklinks(name, userId, accessLevel);
+    return { name, backlinks };
+}
+//# sourceMappingURL=getBacklinks.js.map

package/dist/tools/getBacklinks.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"getBacklinks.js","sourceRoot":"","sources":["../../src/tools/getBacklinks.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,sBAAsB,EAAE,MAAM,4BAA4B,CAAC;AACpE,OAAO,EAEL,sBAAsB,EACtB,iBAAiB,GAClB,MAAM,gCAAgC,CAAC;AAExC,MAAM,CAAC,MAAM,uBAAuB,GAAG,CAAC,CAAC,MAAM,CAAC;IAC9C,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,2CAA2C,CAAC;CACvE,CAAC,CAAC;AAIH,MAAM,CAAC,KAAK,UAAU,YAAY,CAChC,KAAwB,EACxB,MAAM,GAAG,EAAE,EACX,YAA2B,sBAAsB;IAEjD,MAAM,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,IAAI,KAAK,CAAC;IAC1E,MAAM,WAAW,GAAG,iBAAiB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC,CAAC,SAAS,CAAC;IAChF,MAAM,SAAS,GAAG,MAAM,sBAAsB,EAAE,CAAC,YAAY,CAAC,IAAI,EAAE,MAAM,EAAE,WAAW,CAAC,CAAC;IACzF,OAAO,EAAE,IAAI,EAAE,SAAS,EAAE,CAAC;AAC7B,CAAC"}

package/dist/tools/getRelated.d.ts

@@ -0,0 +1,12 @@
+import { z } from "zod";
+import { type AccessContext } from "../governance/accessControl.js";
+export declare const getRelatedInputSchema: z.ZodObject<{
+    name: z.ZodString;
+}, "strip", z.ZodTypeAny, {
+    name: string;
+}, {
+    name: string;
+}>;
+export type GetRelatedInput = z.infer<typeof getRelatedInputSchema>;
+export declare function getRelated(input: GetRelatedInput, userId?: string, accessCtx?: AccessContext): Promise<object>;
+//# sourceMappingURL=getRelated.d.ts.map

package/dist/tools/getRelated.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"getRelated.d.ts","sourceRoot":"","sources":["../../src/tools/getRelated.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EACL,KAAK,aAAa,EAGnB,MAAM,gCAAgC,CAAC;AAExC,eAAO,MAAM,qBAAqB;;;;;;EAEhC,CAAC;AAEH,MAAM,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,qBAAqB,CAAC,CAAC;AAEpE,wBAAsB,UAAU,CAC9B,KAAK,EAAE,eAAe,EACtB,MAAM,SAAK,EACX,SAAS,GAAE,aAAsC,GAChD,OAAO,CAAC,MAAM,CAAC,CAKjB"}

package/dist/tools/getRelated.js

@@ -0,0 +1,13 @@
+import { z } from "zod";
+import { getPostgresSearchIndex } from "../search/postgresIndex.js";
+import { DEFAULT_ACCESS_CONTEXT, isHiveModeEnabled, } from "../governance/accessControl.js";
+export const getRelatedInputSchema = z.object({
+    name: z.string().describe("Page name (with or without .md extension)"),
+});
+export async function getRelated(input, userId = "", accessCtx = DEFAULT_ACCESS_CONTEXT) {
+    const name = input.name.endsWith(".md") ? input.name : `${input.name}.md`;
+    const accessLevel = isHiveModeEnabled() ? accessCtx.userAccessLevel : undefined;
+    const related = await getPostgresSearchIndex().getRelatedPages(name, userId, accessLevel);
+    return { name, related };
+}
+//# sourceMappingURL=getRelated.js.map

package/dist/tools/getRelated.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"getRelated.js","sourceRoot":"","sources":["../../src/tools/getRelated.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,sBAAsB,EAAE,MAAM,4BAA4B,CAAC;AACpE,OAAO,EAEL,sBAAsB,EACtB,iBAAiB,GAClB,MAAM,gCAAgC,CAAC;AAExC,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAC,MAAM,CAAC;IAC5C,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,2CAA2C,CAAC;CACvE,CAAC,CAAC;AAIH,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,KAAsB,EACtB,MAAM,GAAG,EAAE,EACX,YAA2B,sBAAsB;IAEjD,MAAM,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,IAAI,KAAK,CAAC;IAC1E,MAAM,WAAW,GAAG,iBAAiB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC,CAAC,SAAS,CAAC;IAChF,MAAM,OAAO,GAAG,MAAM,sBAAsB,EAAE,CAAC,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,WAAW,CAAC,CAAC;IAC1F,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;AAC3B,CAAC"}

package/dist/tools/healthCheck.d.ts

@@ -0,0 +1,5 @@
+import { z } from "zod";
+import type { StorageClient } from "../storage/client.js";
+export declare const healthCheckInputSchema: z.ZodObject<{}, "strip", z.ZodTypeAny, {}, {}>;
+export declare function healthCheck(client: StorageClient, userId?: string): Promise<object>;
+//# sourceMappingURL=healthCheck.d.ts.map

package/dist/tools/healthCheck.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"healthCheck.d.ts","sourceRoot":"","sources":["../../src/tools/healthCheck.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAG1D,eAAO,MAAM,sBAAsB,gDAAe,CAAC;AA2CnD,wBAAsB,WAAW,CAAC,MAAM,EAAE,aAAa,EAAE,MAAM,SAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CA0IrF"}

package/dist/tools/healthCheck.js

@@ -0,0 +1,167 @@
+import { z } from "zod";
+import { getPostgresSearchIndex } from "../search/postgresIndex.js";
+export const healthCheckInputSchema = z.object({});
+function isUncommitted(committedAt) {
+    return committedAt === "—" || committedAt === "-" || !committedAt;
+}
+function parseSessionLog(content) {
+    const entries = [];
+    const lines = content.split("\n");
+    // Find the header separator line (starts with |---) to locate table rows
+    let dataStart = -1;
+    for (let i = 0; i < lines.length; i++) {
+        if (lines[i].trimStart().startsWith("|---") || lines[i].trimStart().startsWith("| ---")) {
+            dataStart = i + 1;
+            break;
+        }
+    }
+    if (dataStart === -1)
+        return entries;
+    for (let i = dataStart; i < lines.length; i++) {
+        const line = lines[i].trim();
+        if (!line.startsWith("|"))
+            continue;
+        const cells = line.split("|").map((c) => c.trim()).filter((_, idx, arr) => idx > 0 && idx < arr.length - 1);
+        if (cells.length < 5)
+            continue;
+        entries.push({
+            session_id: cells[0],
+            started_at: cells[1],
+            committed_at: cells[2],
+            agent: cells[3],
+            tags_pulled: cells[4],
+        });
+    }
+    return entries;
+}
+export async function healthCheck(client, userId = "") {
+    const startMs = Date.now();
+    const requiredFolders = [
+        "instructions",
+        "canonical",
+        "data",
+        "decisions",
+        "history",
+        "projects",
+    ];
+    const requiredSeedPages = [
+        "instructions/brain-routing.md",
+        "decisions/readme.md",
+        "history/readme.md",
+    ];
+    // Run storage check and Postgres checks in parallel to reduce latency
+    const pgIndex = getPostgresSearchIndex();
+    // Round-trip instrumentation (GH #412). Server-side latency to Supabase is
+    // the dominant cost of every authenticated request — the SQL itself runs in
+    // ~1ms per pg_stat_statements, so anything above that is network, TLS and
+    // PostgREST overhead. Measuring it here makes that visible directly instead
+    // of having to infer it by differencing endpoint timings from outside.
+    const timed = async (fn) => {
+        const t0 = Date.now();
+        const value = await fn();
+        return [value, Date.now() - t0];
+    };
+    const [[storageResult, storageMs], [pgPing, indexMs], taxonomyResult] = await Promise.all([
+        timed(() => client.verifyAccess().then(() => ({ ok: true })).catch((err) => ({
+            ok: false,
+            error: err instanceof Error ? err.message : String(err),
+        }))),
+        timed(() => pgIndex.ping(userId)),
+        userId ? pgIndex.checkTaxonomy(userId, requiredSeedPages, requiredFolders).catch(() => null) : Promise.resolve(null),
+    ]);
+    const storageStatus = storageResult.ok ? "ok" : "error";
+    const storageError = storageResult.ok ? undefined : storageResult.error;
+    let missingSeedPages = [];
+    let missingFolders = [];
+    if (!userId) {
+        // No user context (api-key / connector-key mode): taxonomy is user-scoped and
+        // cannot be verified against the global drive. Skip the check — not degraded.
+    }
+    else if (pgPing.ok && taxonomyResult) {
+        // Targeted point lookups (exact name / folder prefix) instead of diffing against
+        // a bulk listPages() fetch — correct regardless of wiki size (GH #358: a bulk
+        // fetch ordered by modified.desc silently drops old seed pages past PostgREST's
+        // default row cap on large wikis, causing false "missing" reports).
+        missingSeedPages = taxonomyResult.missingSeedPages;
+        missingFolders = taxonomyResult.missingFolders;
+    }
+    else {
+        // Postgres not configured or unavailable — fall back to a storage listing.
+        try {
+            const fileEntries = await client.listFiles();
+            const pageNames = new Set(fileEntries.map((e) => e.name));
+            missingSeedPages = requiredSeedPages.filter((name) => !pageNames.has(name));
+            const presentFolders = new Set([...pageNames]
+                .filter((n) => n.includes("/"))
+                .map((n) => n.split("/")[0]));
+            missingFolders = requiredFolders.filter((folder) => !presentFolders.has(folder));
+        }
+        catch {
+            // If listing also fails, leave both arrays empty (storage error is already surfaced above).
+        }
+    }
+    // Session log dirty detection
+    let sessionsStatus = "no_log";
+    let unpushedCount = 0;
+    let sessionsWarning;
+    try {
+        const sessionLogFile = await client.readFile("sync/session-log.md");
+        const entries = parseSessionLog(sessionLogFile.content);
+        unpushedCount = entries.filter((e) => isUncommitted(e.committed_at)).length;
+        if (unpushedCount > 0) {
+            sessionsStatus = "dirty";
+            sessionsWarning = `${unpushedCount} session${unpushedCount === 1 ? " was" : "s were"} started but never pushed. Check previous chat before continuing.`;
+        }
+        else {
+            sessionsStatus = "ok";
+        }
+    }
+    catch {
+        // No session log yet — not an error condition
+        sessionsStatus = "no_log";
+    }
+    return {
+        status: storageStatus === "ok" ? "healthy" : "degraded",
+        subject: userId || undefined,
+        storage: {
+            type: "local",
+            status: storageStatus,
+            location: client.getStorageLocation(),
+            // One Storage round trip, server-side — compare against index.pingMs.
+            verifyMs: storageMs,
+            ...(storageError ? { error: storageError } : {}),
+        },
+        backup: {
+            enabled: process.env.DRIVE_BACKUP_ENABLED === "true",
+        },
+        taxonomy: {
+            requiredFolders,
+            missingFolders,
+            requiredSeedPages,
+            missingSeedPages,
+            status: missingFolders.length === 0 && missingSeedPages.length === 0
+                ? "ok"
+                : "degraded",
+        },
+        index: {
+            backend: "postgres",
+            configured: pgIndex.isConfigured(),
+            status: pgPing.ok ? "ok" : "degraded",
+            // One PostgREST round trip (HEAD + count=exact), server-side. The query
+            // itself executes in ~1ms, so this figure is almost entirely network,
+            // TLS and PostgREST overhead — the dominant cost of every authenticated
+            // request (GH #412).
+            pingMs: indexMs,
+            ...(pgPing.rowCount !== undefined ? { rowCount: pgPing.rowCount } : {}),
+            ...(pgPing.error ? { error: pgPing.error } : {}),
+        },
+        sessions: {
+            status: sessionsStatus,
+            ...(sessionsStatus === "dirty" ? { unpushedCount, warning: sessionsWarning } : {}),
+        },
+        uptimeMs: process.uptime() * 1000,
+        responseTimeMs: Date.now() - startMs,
+        timestamp: new Date().toISOString(),
+    };
+}
+//# sourceMappingURL=healthCheck.js.map

package/dist/tools/healthCheck.js.map

@@ -0,0 +1 @@
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package/dist/tools/importBrainSource.d.ts

@@ -0,0 +1,36 @@
+import { z } from "zod";
+import type { StorageClient } from "../storage/client.js";
+export declare const importBrainSourceInputSchema: z.ZodObject<{
+    sourceRoot: z.ZodString;
+    execute: z.ZodDefault<z.ZodBoolean>;
+    maxFiles: z.ZodDefault<z.ZodNumber>;
+    skipRawCatalogs: z.ZodDefault<z.ZodBoolean>;
+    excludeDirs: z.ZodDefault<z.ZodArray<z.ZodString, "many">>;
+    chunkSize: z.ZodDefault<z.ZodNumber>;
+    runLabel: z.ZodOptional<z.ZodString>;
+    logTiming: z.ZodDefault<z.ZodBoolean>;
+    previewLimit: z.ZodDefault<z.ZodNumber>;
+}, "strip", z.ZodTypeAny, {
+    logTiming: boolean;
+    sourceRoot: string;
+    execute: boolean;
+    maxFiles: number;
+    skipRawCatalogs: boolean;
+    excludeDirs: string[];
+    chunkSize: number;
+    previewLimit: number;
+    runLabel?: string | undefined;
+}, {
+    sourceRoot: string;
+    runLabel?: string | undefined;
+    logTiming?: boolean | undefined;
+    execute?: boolean | undefined;
+    maxFiles?: number | undefined;
+    skipRawCatalogs?: boolean | undefined;
+    excludeDirs?: string[] | undefined;
+    chunkSize?: number | undefined;
+    previewLimit?: number | undefined;
+}>;
+export type ImportBrainSourceInput = z.infer<typeof importBrainSourceInputSchema>;
+export declare function importBrainSource(drive: StorageClient, input: ImportBrainSourceInput, userId?: string): Promise<object>;
+//# sourceMappingURL=importBrainSource.d.ts.map

package/dist/tools/importBrainSource.d.ts.map

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