brainllm 12.4.1 → 12.5.0

package/skills/brainllm/references/domains.md

@@ -1,66 +1,50 @@
 # Domain Knowledge Lifecycle
 
-Domain knowledge is **gated and current-state**. Read this before creating a domain, adding a sub-category note, or refreshing existing domain content — then pick the one protocol that matches what's actually happening. Never skip the sources gate where one applies, and never manufacture knowledge.
+Read this before creating a domain, adding a sub-category note, or refreshing domain content, then follow the one protocol that matches. Never skip the sources gate and never manufacture knowledge.
 
-**The markers:** ❇️ = discovered/credible, not yet used. ✅ = used. Markers appear on each source entry as **just the emoji** — marker dates live in the Sources note's **Revision** table, never inline in the list.
+## The shape of a domain
 
-**Dates are server policy.** Every Sources and information note carries a `Last updated` line that the server bumps on every content write — you never hand-maintain it. (V8's "one manual date" exception is gone.)
+A domain is **one Sources note plus one information note per sub-category**, each a maintained document revised in place.
 
-**Siblings set the pattern.** This is where the consistency rule bites hardest, because domain notes are the most numerous and the most repeated kind in the brain: every Sources note reads like the other Sources notes, every information note like its peers in the same domain and in every other domain. Read one before writing another — the canonical structure below gives you the skeleton, the sibling gives you the conventions it can't encode (heading depth, table shape, how much prose a sub-category warrants). And keep headings minimal: a domain note earns its structure from the source list and the Revision table, not from splitting three paragraphs across four h3s. If a pattern genuinely needs improving, improve it across every domain — one better-shaped note among twenty is drift, and the next writer has to guess which shape is canonical.
+| Note | Holds |
+|---|---|
+| **Sources** | every source, marked ❇️ discovered / ✅ used, grouped under h3s; a **Revision** table (Source · Marker · Date) |
+| **Current State** | the domain's **measured state** — what is live, built, deployed, counted — latest value only, with the date it was measured. The only information note that holds state |
+| any other information note | **timeless knowledge**: how the thing works, its rules, its architecture, its constraints. No state, versions, dates, incidents or decision history |
+| a `#mandate` note (optional) | a standing brief a session must follow (e.g. a founder brief) — `remember(..., mandate=true)` |
 
-## The canonical Sources note
+**History and decisions never live in a domain.** "What run N found" and "what Miiso decided on a date" go to the venture's thread entries; the domain holds the resulting truth. If you are about to write a date into a non-Current-State note, it belongs in Current State (a measurement) or in a thread entry (an event).
 
-**Domains are born complete** — creating a domain (any `remember(domain=…)` call that resolves a new name) creates the book AND its canonical Sources note. Its structure, top to bottom (serve it anytime with `template(kind="sources")`):
+Markers are just the emoji on each source; their dates live only in the Revision table. `Last updated` lines are server-maintained. Titles are ≤ 4 words with no dates or run numbers; a sub-category that needs more words is two sub-categories. Read a sibling before writing and match it; improve a pattern across every domain or not at all.
 
-1. Server header (`sources · domain: <name>`)
-2. `Last updated - <date>` (h4) — server-maintained
-3. **Sources** (h2) — the ❇️/✅ legend line, then the full, complete source list: **every** source (URL, doc, file, dataset, …) listed and marked individually with just its emoji; related sources grouped under h3 subheadings
-4. **Revision** (h2) — a `Source | Marker | Date` table recording each source's current marker and the date it earned it
+## The Sources note
 
-`remember(kind="sources", domain=…)` **merges into the Sources section** — the note is a maintained clean document, never a stack of dated addendum blocks. Pass `revision=[{source, marker, date?}]` on the same call to upsert Revision-table rows by source name — re-verifying a source replaces its existing row in place, it never grows a new one. Fall back to `revise(find=…)` surgery only for something the upsert can't express (e.g. renaming a source's row key).
+Creating a domain creates the book and its Sources note together. `remember(kind="sources", domain=…)` merges into the Sources section; pass `revision=[{source, marker, date?}]` to upsert Revision rows by source name (the name must match the list exactly).
 
-## 1. Creating a new domain (the domain doesn't exist yet)
+## 1. Creating a domain
 
 1. Propose the title.
-2. Create the domain via any domain-scoped `remember()` — the book and its canonical Sources note are created together (the receipt carries `domainId`).
-3. Run an info-query sources-discovery pass and record every candidate in the Sources note, each marked ❇️, grouped with its related sources.
-4. Propose/obtain the learning scope from the user (which sources, how deep).
-5. Read the approved sources and create the appropriate sub-category `information` note(s).
-6. Flip the used entries' markers to ✅ and record the date in the Revision table.
-7. `connect()` and wire relations (or pass `connect=` on the `remember()` calls).
+2. Any domain-scoped `remember()` creates the book and its Sources note.
+3. Discover sources and record each as ❇️, grouped.
+4. Agree the learning scope with the user.
+5. Read the approved sources; write the information notes, starting with **Current State**.
+6. Flip used sources to ✅ with their Revision dates.
+7. Wire relations (`connect=` on the `remember` calls).
 
-If all source candidates are rejected in step 4, **no information note is created** — an unsourced domain note corrupts the brain.
+If every source is rejected, create no information note — an unsourced note corrupts the brain.
 
-## 2. Adding a sub-category note to an existing domain
+## 2. Adding a sub-category
 
-Use when the Sources note already covers the relevant source — no new discovery needed. This path extends an already-sourced domain with another sub-category; it is not for introducing new claims.
+For a source the Sources note already covers: `remember(kind="information", domain, title, body, mustCreate=true)`, then wire it.
 
-1. Propose the title.
-2. Create the `information` note directly (`remember(kind="information", domain=…, title=…)`).
-3. `connect()` and wire relations.
-
-## 3. Maintaining domain knowledge (periodic refresh)
+## 3. Refreshing a domain
 
-1. Read the Sources note for any ❇️ discovered-but-unused entries → read those sources and create/update the appropriate sub-category `information` note(s).
-2. Check the Revision table for ✅ entries last used more than a month ago → verify those sources are still available/credible; update Sources if not.
-3. Skim the domain (`domain(name)`) for its sub-category notes → spot-check each against its source for continued correctness — if correct, stop; if not, re-read the source and update the note.
-4. Flip markers to ✅ and record dates in the Revision table.
-5. `connect()` and wire relations.
+1. Read ❇️ sources not yet used; fold what they teach into the right notes.
+2. Re-check ✅ sources older than a month; update Sources if they moved.
+3. Re-measure **Current State** against live sources; replace values in place, then run `consistency()` on anything recorded twice.
+4. Spot-check each other note for correctness and for state or history that has crept in (`maintain(deep)` flags dated prose).
+5. Update markers and Revision dates; wire relations.
 
 ## Renames
 
-Retitling a domain book (`revise(bookId, title=…)`) **cascades automatically**: the book's `#domain` slug and every child's are updated server-side, so `domain()` gathering never breaks on a stale slug. Hyphenated slugs (`wall-e`, `framer-templates`) resolve correctly.
-
-## The shape of a domain's surface
-
-A domain's Knowledge surface is exactly: **one maintained Sources note, plus a small set of consolidated, current-state information notes — one per sub-category, never one per day.** It holds what's true now, not a changelog of what was true on each date it was checked.
-
-Chronological, run-by-run history belongs in Memory/Threads — a thread is the right place for "here's what Run N found"; a domain information note is the right place for "here's what's actually true about this sub-category," kept current by revision, not accumulation. If you find yourself naming a new information note after today's date or a run number, stop — that finding either updates an existing note (revise it) or doesn't belong in Domains at all.
-
-The title rule is the same here as everywhere: **four words maximum**, no dates, no run numbers. Sub-category titles are where it's most often stretched, and a title that won't fit is telling you something — a sub-category needing eight words to name is usually two sub-categories, so split the content rather than the title. Merge behaviour follows from the same place: Sources and information notes are maintained current-state documents, so new findings fold into the relevant section (`section=`, `find=`) and never arrive as a dated addendum block.
-
-## Standing briefs vs current-state facts — the mandate marker
-
-A domain holds two things that read alike and behave differently: a **standing brief** (instructions a future session must follow — the operating mandate of a venture) and a **current-state fact** (what's true right now). Both are `kind="information"`, and until now telling them apart meant reading each note's prose. A scoped autonomous session that needs "the thing I must obey" should not have to skim every sub-category note to find it.
-
-Mark a brief with `remember(kind="information", domain=…, title=…, body=…, mandate=true)` — it adds a `#mandate` flag, surfaced as `mandate: true` in `domain()` group rows and in `knowledge_recall` stubs. A session looking for its brief reads the domain and the mandate-flagged note is the one carrying instructions rather than facts. `label(noteId, "mandate")` / `label(noteId, "mandate", remove=true)` sets or clears the marker on an existing note. One note per mandate, titled by the brief it is ("Founder Brief", "Operating Mandate") — the four-word rule still applies.
+Retitling a domain book cascades its `#domain` slug to every child automatically.

package/skills/brainllm/references/taxonomy.md

@@ -36,7 +36,8 @@ Written by the server — you never set `#noteType`, `#status`, `#created`, `#up
 
 | Label | Values | Purpose |
 |---|---|---|
-| `#noteType` | `biography` `goals` `preferences` `responsibilities` `protocols` `selfcorrection` `diary` `session` `thread` `threadEntry` `user` `domain` `information` `sources` `claim` `log` | Kind — exactly one per note, set at creation and immutable once present; a missing kind may be repaired explicitly. `threadEntry` is never created directly — only as a thread's day-child; `claim` is managed by `claim()` |
+| `#noteType` | `biography` `goals` `preferences` `responsibilities` `protocols` `selfcorrection` `diary` `session` `thread` `threadEntry` `user` `domain` `information` `sources` `claim` `log` | Kind — exactly one per note, set at creation and immutable once present; a missing kind may be repaired explicitly. `threadEntry` is a dated thread's day-child (created by appending) or a collection thread's titled entry (`remember(kind="threadEntry", thread=)`); `claim` is managed by `claim()` |
+| `#threadShape` | `collection` | On a thread book: children are titled, maintained entries rather than dated days. Absent = dated |
 | `#status` | `active` `dormant` `resolved` `superseded` `eternal` | Lifecycle state — threads age; `resolve()` sets terminal. `eternal` = lifecycle-exempt, never aged by the sweep — for user-curated permanent threads |
 | `#created` | ISO date | Set at creation (the user's local day) |
 | `#updated` | ISO date | Updated on every write |
@@ -47,6 +48,6 @@ Written by the server — you never set `#noteType`, `#status`, `#created`, `#up
 | `#mandate` | (flag) | Information notes only — marks a **standing brief** (instructions a future session must follow) as distinct from current-state fact. Set via `remember(…, mandate=true)` or `label(id, "mandate")`; surfaced in `domain()` and `knowledge_recall`. See `references/domains.md` |
 | `#reviewed` | content blob id | Set by `maintain(ack=[…])` — this note's current content was reviewed and its maintenance findings accepted. Suppresses them until the body actually changes, then all of them return |
 | `#brainLlmRoot` | (flag) | Marks the brain root — used by auto-discovery |
-| `#iconClass` | `bx …` | Display icon — set via `icon=` on `remember`/`revise`/`diary`/`close` (class or bare name, normalized) |
+| `#iconClass` | `bx …` | Display icon — required on every note except logs. Kind default at creation (entries inherit their thread's), sweep backfills; choose one with `icon=` on `remember`/`revise`/`diary`/`close` |
 
 **Searching by label:** `recall()` accepts `kinds=[]`, `domain=`, `includeArchived=`. Raw queries via `search_notes()`: `#status=active`, `#noteType=thread`, `#topic=infra`, `#archived` (presence), `note.dateModified < 'YYYY-MM-DD'`. Combine with `AND`/`OR` (space = AND).

package/skills/brainllm/references/troubleshooting.md

@@ -28,14 +28,14 @@
 |---|---|
 | BrainLLM tools time out or return connection errors | The backend is unreachable, not the tool — every ETAPI call is bounded at 30 s with one retry on idempotent reads, so a hang surfaces as a failed tool call rather than a stuck session. Check the instance `TRILIUM_BASE_URL` names: a hosted deploy should answer at its own URL, a local desktop install needs the Trilium app running. Then retry. |
 | `start` → `uninitialized` | `bootstrap` |
-| Deep maintenance flags the same items every session | Act on them — `connect()` orphans, `revise()`/`resolve()` stale notes — or `maintain(ack=[…])` the ones that are correct as they stand. Don't just keep ignoring them: a list you skim is a list where the item that *did* change gets missed |
+| Deep maintenance flags the same items every session | Act on them, or `maintain(ack=[…])` the ones you reviewed and found correct |
 | `revise(find=)` returns `replaced: 0` | Read the hint — it names the cause. Escaped search string (`&lt;h3&gt;` against stored real tags): pass the tag literally. Spans a block boundary (`</h3>` then `<ol>`): anchor inside one element, or use `section=` with `mode="before"/"after"`. Otherwise it was already replaced, or the text genuinely differs — check with `inspect(noteId, find="<shorter substring>")` |
 | `revise(section=)` returns `matched: false` | No heading matched, so a NEW section was written — at the note's own level, with the note's real headings in `available[]`. Re-target from that list; `outline(noteId)` gives the same tree plus levels and occurrence indices before you write |
 | Two sections legitimately share a heading | `revise(section=…, occurrence=2)`. Repeating a closing heading under every category is the consistency rule working, not drift — `occurrence=` is how you reach the second one without rewriting the whole section |
-| Note body looks like literal `&lt;p&gt;` text in Trilium | It was written entity-encoded before the decode existed. New writes are fixed; repairing an existing note is a deliberate `revise(mode="replace")` with decoded content — nothing decodes it for you as a side effect |
+| Note body shows literal `&lt;p&gt;` text in Trilium | Entity-corrupted: `maintain(repair=[noteId])` unwinds one level in place |
 | Unsure whether a note is still structurally sound after several edits | `outline(noteId)` — duplicate headings, unbalanced tags and size in one call, no body read. `maintain(deep=true)` runs the same check across the brain |
 | `recall` returns odd results | It already filters untyped notes; if it persists, `maintain(deep=true)` then retry |
-| Deep maintenance flags something you have never seen before | V10 added hygiene passes: `entity-corrupted`, `dated title`, `long title`, `stub`, `revision bloat`, `consolidate`, `unverified sources`. Each names its own fix in the flag text — read it rather than guessing. |
+| Deep maintenance flags something unfamiliar | Every finding names its own fix in the flag text — read it rather than guessing |
 | A session was interrupted and you are resuming it | The pre-close gate is durable (a `#gate` label on today's session note), so steps you already ran still count. Re-run only what `close()` says is missing. |
 | `start()` did not give you the singleton content you expected | By design — singletons arrive as section headings. Pull one with `master(which)`/`llm(which)`, or re-run `start(depth="full")` if the session genuinely needs the whole self-model. |
 | A keyword search should have matched and did not | Try `recall(query, fuzzy=true)` for typo tolerance, or `recall(regex="…")` when the question is structural (a pattern in the stored HTML) rather than lexical. |
@@ -46,3 +46,5 @@
 | Config IDs stale after restructuring in Trilium | `bootstrap` re-discovers and rewrites `brainllm.json` |
 | `bootstrap` created a duplicate brain tree | Caused by a transient network/auth error during the existence check — the old catch-all fell through to fresh create. Fixed: only a confirmed 404 (root deleted) now triggers a new tree. To recover: identify the newer duplicate by `dateCreated`, then `forget(rootId, hard=true)` its entire subtree or delete it directly in Trilium. |
 | Hosted deploy: `ENOENT` on startup / auto-discovery fails with a file-path error | `BRAINLLM_CONFIG` is set to a directory path instead of a file path (e.g. `/home/node/trilium-data` instead of `/vol/brainllm.json`). Mount a persistent volume on the BrainLLM MCP service (not the Trilium service) and set `BRAINLLM_CONFIG` to a file path inside it, or remove `BRAINLLM_CONFIG` entirely to rely on auto-discovery each startup. |
+| `revise`/`remember` on a thread returns `collection_thread` | It is a collection thread: add entries with `remember(kind="threadEntry", thread=, title=)`, edit them with `revise(<entry id>)` |
+| `content is not standard RFC 4648 base64` on a text note | Fixed in V12.5: a blank MIME type is now text. On an older server, rewrite the note with `update_note_content(mime="text/html", encoding="text")` |