brainbank 0.9.0 → 0.9.3

package/dist/chunk-6NM6WRDX.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/config.ts","../src/constants.ts","../src/db/sqlite-adapter.ts","../src/db/tracker.ts","../src/db/metadata.ts","../src/lib/write-lock.ts","../src/lib/math.ts","../src/lib/rerank.ts","../src/lib/rrf.ts","../src/lib/prune.ts","../src/search/bm25-boost.ts","../src/lib/logger.ts","../src/search/context-builder.ts","../src/search/keyword/composite-bm25-search.ts","../src/search/vector/composite-vector-search.ts","../src/providers/vector/hnsw-index.ts","../src/lib/fts.ts","../src/services/collection.ts","../src/services/kv-service.ts","../src/lib/languages.ts","../src/services/watch.ts","../src/services/webhook-server.ts","../src/brainbank.ts","../src/providers/vector/hnsw-loader.ts","../src/engine/index-api.ts","../src/engine/reembed.ts","../src/engine/search-api.ts","../src/services/plugin-registry.ts","../src/cli/utils.ts","../src/cli/factory/brain-context.ts","../src/cli/factory/builtin-registration.ts","../src/cli/factory/plugin-loader.ts","../src/cli/factory/config-loader.ts","../src/cli/factory/index.ts"],"sourcesContent":["import type { BrainBankConfig, ResolvedConfig } from './types.ts';\n\nimport * as path from 'node:path';\n\n\nexport const DEFAULTS: ResolvedConfig = {\n    repoPath: '.',\n    dbPath: '.brainbank/data/brainbank.db',\n    gitDepth: 500,\n    maxFileSize: 512_000,      // 500KB\n    maxDiffBytes: 8192,\n    hnswM: 16,\n    hnswEfConstruction: 200,\n    hnswEfSearch: 50,\n    embeddingDims: 384,\n    maxElements: 2_000_000,\n};\n\n\n/**\n * Merge partial config with defaults.\n * All fields become required.\n * Relative dbPath is resolved against repoPath.\n */\nexport function resolveConfig(partial: BrainBankConfig = {}): ResolvedConfig {\n    const repoPath = path.resolve(partial.repoPath ?? DEFAULTS.repoPath);\n    const rawDbPath = partial.dbPath ?? DEFAULTS.dbPath;\n    // Resolve relative dbPath against repoPath so DB lives alongside the repo\n    const dbPath = path.isAbsolute(rawDbPath) ? rawDbPath : path.join(repoPath, rawDbPath);\n\n    return {\n        repoPath,\n        dbPath,\n        gitDepth:          partial.gitDepth          ?? DEFAULTS.gitDepth,\n        maxFileSize:       partial.maxFileSize       ?? DEFAULTS.maxFileSize,\n        maxDiffBytes:      partial.maxDiffBytes      ?? DEFAULTS.maxDiffBytes,\n        hnswM:             partial.hnswM             ?? DEFAULTS.hnswM,\n        hnswEfConstruction: partial.hnswEfConstruction ?? DEFAULTS.hnswEfConstruction,\n        hnswEfSearch:      partial.hnswEfSearch      ?? DEFAULTS.hnswEfSearch,\n        embeddingDims:     partial.embeddingDims     ?? DEFAULTS.embeddingDims,\n        maxElements:       partial.maxElements       ?? DEFAULTS.maxElements,\n        embeddingProvider: partial.embeddingProvider,\n        reranker: partial.reranker,\n        pruner: partial.pruner,\n        expander: partial.expander,\n        webhookPort: partial.webhookPort,\n        contextFields: partial.contextFields,\n    };\n}\n\n","/**\n * BrainBank — Constants\n *\n * Core-only constants. Plugin names are NOT defined here — they belong\n * to their respective packages. Only keys owned by the core live here.\n */\n\nimport { createRequire } from 'node:module';\n\nconst require = createRequire(import.meta.url);\nconst pkg = require('../package.json') as { version: string };\n\n/** Package version from package.json. */\nexport const VERSION: string = pkg.version;\n\n/** HNSW index key for KV collections (core-owned). */\nexport const HNSW = {\n    KV: 'kv',\n} as const;\n\nexport type HnswKey = typeof HNSW[keyof typeof HNSW];\n","/**\n * BrainBank — SQLite Adapter\n *\n * Implements `DatabaseAdapter` using Node.js built-in `node:sqlite`.\n * Zero native addons — no ABI issues across Node versions.\n * Handles WAL mode, directory creation, schema init, and transactions.\n */\n\nimport type { DatabaseAdapter, AdapterCapabilities, PreparedStatement, ExecuteResult } from './adapter.ts';\nimport type { DatabaseSync as DatabaseSyncType, StatementSync as StatementSyncType } from 'node:sqlite';\n\nimport { DatabaseSync } from 'node:sqlite';\nimport * as fs from 'node:fs';\nimport * as path from 'node:path';\n\n\n// ── Schema ──────────────────────────────────────────────────────────\n\nexport const SCHEMA_VERSION = 9;\n\n/**\n * Create core tables and indices.\n * Safe to call multiple times — uses IF NOT EXISTS.\n * Domain tables are created by plugins via runPluginMigrations().\n */\nfunction createSchema(adapter: DatabaseAdapter): void {\n    adapter.exec(`\n        -- ── Schema versioning ──────────────────────────\n        CREATE TABLE IF NOT EXISTS schema_version (\n            version     INTEGER PRIMARY KEY,\n            applied_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n        INSERT OR IGNORE INTO schema_version (version) VALUES (${SCHEMA_VERSION});\n\n        -- ── Plugin Versions (migration tracking) ──────\n        CREATE TABLE IF NOT EXISTS plugin_versions (\n            plugin_name TEXT    PRIMARY KEY,\n            version     INTEGER NOT NULL,\n            applied_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        -- ── Dynamic Collections (KV Store) ───────────\n        CREATE TABLE IF NOT EXISTS kv_data (\n            id          INTEGER PRIMARY KEY AUTOINCREMENT,\n            collection  TEXT    NOT NULL,\n            content     TEXT    NOT NULL,\n            meta_json   TEXT    NOT NULL DEFAULT '{}',\n            tags_json   TEXT    NOT NULL DEFAULT '[]',\n            expires_at  INTEGER,\n            created_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        CREATE TABLE IF NOT EXISTS kv_vectors (\n            data_id   INTEGER PRIMARY KEY REFERENCES kv_data(id) ON DELETE CASCADE,\n            embedding BLOB    NOT NULL\n        );\n\n        CREATE VIRTUAL TABLE IF NOT EXISTS fts_kv USING fts5(\n            content,\n            collection,\n            content='kv_data',\n            content_rowid='id',\n            tokenize='porter unicode61'\n        );\n\n        CREATE TRIGGER IF NOT EXISTS trg_fts_kv_insert AFTER INSERT ON kv_data BEGIN\n            INSERT INTO fts_kv(rowid, content, collection)\n            VALUES (new.id, new.content, new.collection);\n        END;\n        CREATE TRIGGER IF NOT EXISTS trg_fts_kv_delete AFTER DELETE ON kv_data BEGIN\n            INSERT INTO fts_kv(fts_kv, rowid, content, collection)\n            VALUES ('delete', old.id, old.content, old.collection);\n        END;\n\n        CREATE INDEX IF NOT EXISTS idx_kv_collection ON kv_data(collection);\n        CREATE INDEX IF NOT EXISTS idx_kv_created    ON kv_data(created_at DESC);\n\n        -- ── Embedding Metadata ───────────────────────\n        CREATE TABLE IF NOT EXISTS embedding_meta (\n            key     TEXT PRIMARY KEY,\n            value   TEXT NOT NULL\n        );\n\n        -- ── Index State (cross-process coordination) ─\n        CREATE TABLE IF NOT EXISTS index_state (\n            name       TEXT    PRIMARY KEY,\n            version    INTEGER NOT NULL DEFAULT 0,\n            writer_pid INTEGER NOT NULL DEFAULT 0,\n            updated_at INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        -- ── Plugin Tracking (incremental indexing) ────\n        CREATE TABLE IF NOT EXISTS plugin_tracking (\n            plugin       TEXT NOT NULL,\n            key          TEXT NOT NULL,\n            content_hash TEXT NOT NULL,\n            indexed_at   INTEGER NOT NULL DEFAULT (unixepoch()),\n            PRIMARY KEY (plugin, key)\n        );\n    `);\n}\n\n/** Get the current schema version from the database. */\nexport function getSchemaVersion(adapter: DatabaseAdapter): number {\n    try {\n        const row = adapter.prepare('SELECT MAX(version) as v FROM schema_version').get() as { v: number } | undefined;\n        return row?.v ?? 0;\n    } catch {\n        return 0;\n    }\n}\n\n\n// ── Statement Wrapper ───────────────────────────────────────────────\n\n/** SQLite parameter type accepted by node:sqlite. */\ntype SqlParam = string | number | bigint | null | Uint8Array;\n\n/** Wraps a `node:sqlite` StatementSync into a `PreparedStatement<T>`. */\nfunction wrapStatement<T>(stmt: StatementSyncType): PreparedStatement<T> {\n    return {\n        get(...params: unknown[]): T | undefined {\n            return stmt.get(...(params as SqlParam[])) as T | undefined;\n        },\n        all(...params: unknown[]): T[] {\n            return stmt.all(...(params as SqlParam[])) as T[];\n        },\n        run(...params: unknown[]): ExecuteResult {\n            const info = stmt.run(...(params as SqlParam[]));\n            return {\n                lastInsertRowid: info.lastInsertRowid,\n                changes: Number(info.changes),\n            };\n        },\n        iterate(...params: unknown[]): IterableIterator<T> {\n            return stmt.iterate(...(params as SqlParam[])) as IterableIterator<T>;\n        },\n    };\n}\n\n\n// ── SQLiteAdapter ───────────────────────────────────────────────────\n\nexport class SQLiteAdapter implements DatabaseAdapter {\n    private _db: DatabaseSyncType;\n\n    readonly capabilities: AdapterCapabilities = {\n        fts: 'fts5',\n        upsert: 'or-replace',\n        json: true,\n        vectors: false,\n    };\n\n    constructor(dbPath: string) {\n        // Ensure parent directory exists\n        const dir = path.dirname(dbPath);\n        if (!fs.existsSync(dir)) {\n            fs.mkdirSync(dir, { recursive: true });\n        }\n\n        this._db = new DatabaseSync(dbPath);\n        this._db.exec('PRAGMA journal_mode = WAL');\n        this._db.exec('PRAGMA busy_timeout = 5000');\n        this._db.exec('PRAGMA synchronous = NORMAL');\n        this._db.exec('PRAGMA foreign_keys = ON');\n\n        // Initialize schema\n        createSchema(this);\n    }\n\n    /** Prepare a reusable statement. */\n    prepare<T = unknown>(sql: string): PreparedStatement<T> {\n        return wrapStatement<T>(this._db.prepare(sql));\n    }\n\n    /** Execute raw SQL (no results). */\n    exec(sql: string): void {\n        this._db.exec(sql);\n    }\n\n    /** Run a function inside a transaction. Auto-commits on success, auto-rollbacks on error. */\n    transaction<T>(fn: () => T): T {\n        this._db.exec('BEGIN');\n        try {\n            const result = fn();\n            this._db.exec('COMMIT');\n            return result;\n        } catch (err) {\n            this._db.exec('ROLLBACK');\n            throw err;\n        }\n    }\n\n    /** Run a prepared statement on multiple rows. Wraps in a single transaction. */\n    batch<T extends unknown[]>(sql: string, rows: T[]): void {\n        const stmt = this._db.prepare(sql);\n        this.transaction(() => {\n            for (const row of rows) {\n                stmt.run(...(row as SqlParam[]));\n            }\n        });\n    }\n\n    /** Close the database. */\n    close(): void {\n        this._db.close();\n    }\n\n    /**\n     * Access the underlying `node:sqlite` DatabaseSync instance.\n     *\n     * @deprecated Use `DatabaseAdapter` methods instead. This exists\n     * only for gradual migration of plugins that depend on driver internals.\n     */\n    raw<T = unknown>(): T {\n        return this._db as unknown as T;\n    }\n}\n","/**\n * BrainBank — Incremental Tracker\n *\n * Standardized helper for plugins to detect add/update/delete during indexing.\n * Uses a shared `plugin_tracking` table with per-plugin namespacing.\n *\n * Usage in a plugin:\n *   const tracker = ctx.createTracker();  // uses plugin name\n *   for (const file of files) {\n *       const hash = sha256(content);\n *       if (tracker.isUnchanged(file, hash)) { skipped++; continue; }\n *       indexFile(file, content);\n *       tracker.markIndexed(file, hash);\n *   }\n *   const orphans = tracker.findOrphans(new Set(files));\n *   for (const key of orphans) { removeData(key); tracker.remove(key); }\n */\n\nimport type { DatabaseAdapter } from './adapter.ts';\n\n/** Incremental index tracker — detects add/update/delete for plugin files. */\nexport interface IncrementalTracker {\n    /** Check if a key's content is unchanged. Returns true if the hash matches (skip indexing). */\n    isUnchanged(key: string, contentHash: string): boolean;\n\n    /** Mark a key as successfully indexed with the given hash. Call after indexing completes. */\n    markIndexed(key: string, contentHash: string): void;\n\n    /** Find tracked keys that are NOT in the current set. Returns keys to delete. */\n    findOrphans(currentKeys: Set<string>): string[];\n\n    /** Remove tracking for a key. Call after cleaning up the key's data. */\n    remove(key: string): void;\n\n    /** Remove all tracking entries for this plugin. */\n    clear(): void;\n}\n\n/** Create tracking table. Called during core schema init. */\nexport function createTrackingTable(db: DatabaseAdapter): void {\n    db.exec(`\n        CREATE TABLE IF NOT EXISTS plugin_tracking (\n            plugin       TEXT NOT NULL,\n            key          TEXT NOT NULL,\n            content_hash TEXT NOT NULL,\n            indexed_at   INTEGER NOT NULL DEFAULT (unixepoch()),\n            PRIMARY KEY (plugin, key)\n        );\n    `);\n}\n\n/** Create an IncrementalTracker scoped to a plugin name. */\nexport function createTracker(db: DatabaseAdapter, pluginName: string): IncrementalTracker {\n    return {\n        isUnchanged(key: string, contentHash: string): boolean {\n            const row = db.prepare(\n                'SELECT content_hash FROM plugin_tracking WHERE plugin = ? AND key = ?'\n            ).get(pluginName, key) as { content_hash: string } | undefined;\n            return row?.content_hash === contentHash;\n        },\n\n        markIndexed(key: string, contentHash: string): void {\n            db.prepare(`\n                INSERT INTO plugin_tracking (plugin, key, content_hash)\n                VALUES (?, ?, ?)\n                ON CONFLICT(plugin, key) DO UPDATE SET\n                    content_hash = excluded.content_hash,\n                    indexed_at = unixepoch()\n            `).run(pluginName, key, contentHash);\n        },\n\n        findOrphans(currentKeys: Set<string>): string[] {\n            const rows = db.prepare(\n                'SELECT key FROM plugin_tracking WHERE plugin = ?'\n            ).all(pluginName) as { key: string }[];\n            return rows.filter(r => !currentKeys.has(r.key)).map(r => r.key);\n        },\n\n        remove(key: string): void {\n            db.prepare(\n                'DELETE FROM plugin_tracking WHERE plugin = ? AND key = ?'\n            ).run(pluginName, key);\n        },\n\n        clear(): void {\n            db.prepare(\n                'DELETE FROM plugin_tracking WHERE plugin = ?'\n            ).run(pluginName);\n        },\n    };\n}\n","/**\n * BrainBank — Database Metadata\n *\n * Helpers for reading/writing metadata stored in core SQLite tables:\n *\n * - **Index State** — cross-process HNSW version tracking.\n *   Processes compare in-memory versions with DB to detect staleness\n *   and trigger hot-reload via `ensureFresh()`.\n *\n * - **Embedding Meta** — tracks which embedding provider is stored in\n *   the database. Detects dimension mismatches at startup and updates\n *   metadata after `reembed()`.\n */\n\nimport type { EmbeddingProvider } from '@/types.ts';\nimport type { DatabaseAdapter, EmbeddingMetaRow } from './adapter.ts';\n\nimport { providerKey } from '@/lib/provider-key.ts';\n\n\n// ── Index State ─────────────────────────────────────────────────────\n\n/** Row shape returned from index_state queries. */\ninterface IndexStateRow {\n    name: string;\n    version: number;\n    writer_pid: number;\n    updated_at: number;\n}\n\n/**\n * Increment the version for a given index name.\n * Sets writer_pid to current process PID.\n * Uses UPSERT so the row is created on first call.\n */\nexport function bumpVersion(db: DatabaseAdapter, name: string): number {\n    const row = db.prepare(`\n        INSERT INTO index_state (name, version, writer_pid, updated_at)\n        VALUES (?, 1, ?, unixepoch())\n        ON CONFLICT(name) DO UPDATE SET\n            version    = version + 1,\n            writer_pid = excluded.writer_pid,\n            updated_at = excluded.updated_at\n        RETURNING version\n    `).get(name, process.pid) as { version: number };\n    return row.version;\n}\n\n/**\n * Get all index versions as a Map.\n * Used by `ensureFresh()` to compare against in-memory versions.\n */\nexport function getVersions(db: DatabaseAdapter): Map<string, number> {\n    const rows = db.prepare('SELECT name, version FROM index_state').all() as IndexStateRow[];\n    const map = new Map<string, number>();\n    for (const row of rows) {\n        map.set(row.name, row.version);\n    }\n    return map;\n}\n\n/** Get the version of a single index. Returns 0 if not found. */\nexport function getVersion(db: DatabaseAdapter, name: string): number {\n    const row = db.prepare('SELECT version FROM index_state WHERE name = ?').get(name) as { version: number } | undefined;\n    return row?.version ?? 0;\n}\n\n\n// ── Embedding Meta ──────────────────────────────────────────────────\n\n/** Stored embedding metadata shape. */\nexport interface EmbeddingMeta {\n    provider: string;\n    dims: number;\n    /** Stable key for auto-resolving provider on startup (e.g. 'openai', 'local'). */\n    providerKey: string;\n}\n\n/** Get stored embedding metadata. Returns null if not set. */\nexport function getEmbeddingMeta(db: DatabaseAdapter): EmbeddingMeta | null {\n    try {\n        const provider = db.prepare(\n            \"SELECT value FROM embedding_meta WHERE key = 'provider'\"\n        ).get() as EmbeddingMetaRow | undefined;\n        const dims = db.prepare(\n            \"SELECT value FROM embedding_meta WHERE key = 'dims'\"\n        ).get() as EmbeddingMetaRow | undefined;\n        const key = db.prepare(\n            \"SELECT value FROM embedding_meta WHERE key = 'provider_key'\"\n        ).get() as EmbeddingMetaRow | undefined;\n\n        if (!provider || !dims) return null;\n        return {\n            provider: provider.value,\n            dims: Number(dims.value),\n            providerKey: key?.value ?? 'local',\n        };\n    } catch {\n        return null;\n    }\n}\n\n/** Store current provider info. */\nexport function setEmbeddingMeta(db: DatabaseAdapter, embedding: EmbeddingProvider): void {\n    const upsert = db.prepare(\n        'INSERT OR REPLACE INTO embedding_meta (key, value) VALUES (?, ?)'\n    );\n    upsert.run('provider', embedding.constructor?.name ?? 'unknown');\n    upsert.run('dims', String(embedding.dims));\n    upsert.run('provider_key', providerKey(embedding));\n    upsert.run('indexed_at', new Date().toISOString());\n}\n\n/** Check if the configured provider differs from what's stored. */\nexport function detectProviderMismatch(\n    db: DatabaseAdapter,\n    embedding: EmbeddingProvider,\n): { mismatch: boolean; stored: string; current: string } | null {\n    const meta = getEmbeddingMeta(db);\n    if (!meta) return null; // First time, no mismatch\n\n    const currentName = embedding.constructor?.name ?? 'unknown';\n    const mismatch = meta.dims !== embedding.dims || meta.provider !== currentName;\n\n    return {\n        mismatch,\n        stored: `${meta.provider}/${meta.dims}`,\n        current: `${currentName}/${embedding.dims}`,\n    };\n}\n","/**\n * BrainBank — Write Lock\n *\n * Advisory file lock for cross-process HNSW write exclusion.\n * Uses `O_CREAT | O_EXCL` for atomic lock creation — works on all OS.\n * Stale locks (dead PID) are detected and stolen automatically.\n */\n\nimport { openSync, closeSync, unlinkSync, readFileSync, writeFileSync, existsSync, mkdirSync, constants } from 'node:fs';\nimport { join } from 'node:path';\n\n/** Max wait time before giving up on acquiring a lock (ms). */\nconst MAX_WAIT_MS = 30_000;\n\n/** Initial retry delay (ms), doubled on each retry. */\nconst INITIAL_DELAY_MS = 50;\n\n/** Check if a process is alive by sending signal 0. */\nfunction isProcessAlive(pid: number): boolean {\n    if (isNaN(pid)) return false;\n    try {\n        process.kill(pid, 0);\n        return true;\n    } catch {\n        return false;\n    }\n}\n\n/** Resolve the lock file path. */\nfunction lockPath(lockDir: string, name: string): string {\n    return join(lockDir, `${name}.lock`);\n}\n\n/** Try to create the lock file atomically. Returns true on success. */\nfunction tryCreateLock(filePath: string): boolean {\n    try {\n        const fd = openSync(filePath, constants.O_CREAT | constants.O_EXCL | constants.O_WRONLY);\n        writeFileSync(fd, String(process.pid));\n        closeSync(fd);\n        return true;\n    } catch {\n        return false;\n    }\n}\n\n/**\n * Acquire an advisory lock. Blocks with exponential backoff if another\n * process holds the lock. Steals stale locks from dead processes.\n *\n * @throws After MAX_WAIT_MS if the lock cannot be acquired.\n */\nexport async function acquireLock(lockDir: string, name: string): Promise<void> {\n    if (!existsSync(lockDir)) {\n        mkdirSync(lockDir, { recursive: true });\n    }\n\n    const fp = lockPath(lockDir, name);\n    let delay = INITIAL_DELAY_MS;\n    let elapsed = 0;\n\n    while (true) {\n        if (tryCreateLock(fp)) return;\n\n        // Lock exists — check if holder is alive\n        try {\n            const content = readFileSync(fp, 'utf-8').trim();\n            const pid = parseInt(content, 10);\n            if (isNaN(pid) || !isProcessAlive(pid)) {\n                // Stale lock (dead or invalid PID) — steal it\n                try { unlinkSync(fp); } catch { /* race: another process stole it first */ }\n                if (tryCreateLock(fp)) return;\n            }\n        } catch {\n            // File gone between check and read — retry\n            if (tryCreateLock(fp)) return;\n        }\n\n        if (elapsed >= MAX_WAIT_MS) {\n            throw new Error(`BrainBank: Could not acquire write lock '${name}' after ${MAX_WAIT_MS}ms. Another process may be indexing.`);\n        }\n\n        await new Promise<void>(r => setTimeout(r, delay));\n        elapsed += delay;\n        delay = Math.min(delay * 2, 2000);\n    }\n}\n\n/** Release an advisory lock. Safe to call even if not held. */\nexport function releaseLock(lockDir: string, name: string): void {\n    try {\n        unlinkSync(lockPath(lockDir, name));\n    } catch {\n        // Already released or never acquired — safe to ignore\n    }\n}\n\n/**\n * Execute a function while holding an advisory lock.\n * Lock is always released, even on error.\n */\nexport async function withLock<T>(lockDir: string, name: string, fn: () => T | Promise<T>): Promise<T> {\n    await acquireLock(lockDir, name);\n    try {\n        return await fn();\n    } finally {\n        releaseLock(lockDir, name);\n    }\n}\n","/**\n * BrainBank — Math Utilities\n * \n * Pure vector math functions for similarity calculations.\n * No dependencies — works on Float32Array directly.\n */\n\n/**\n * Cosine similarity between two vectors.\n * Assumes vectors are already normalized (unit length).\n * Returns value between -1.0 and 1.0.\n */\nexport function cosineSimilarity(a: Float32Array, b: Float32Array): number {\n    if (a.length !== b.length) {\n        throw new Error(`Vector dimension mismatch: ${a.length} vs ${b.length}`);\n    }\n    if (a.length === 0) return 0;\n\n    let dot = 0;\n    for (let i = 0; i < a.length; i++) {\n        dot += a[i] * b[i];\n    }\n    return dot;\n}\n\n/**\n * Full cosine similarity (normalizes first).\n * Use this when vectors may not be pre-normalized.\n */\nexport function cosineSimilarityFull(a: Float32Array, b: Float32Array): number {\n    if (a.length !== b.length) {\n        throw new Error(`Vector dimension mismatch: ${a.length} vs ${b.length}`);\n    }\n    if (a.length === 0) return 0;\n\n    let dot = 0, normA = 0, normB = 0;\n    for (let i = 0; i < a.length; i++) {\n        dot += a[i] * b[i];\n        normA += a[i] * a[i];\n        normB += b[i] * b[i];\n    }\n    const denom = Math.sqrt(normA) * Math.sqrt(normB);\n    return denom === 0 ? 0 : dot / denom;\n}\n\n/**\n * L2-normalize a vector to unit length.\n * Returns a new Float32Array.\n */\nexport function normalize(vec: Float32Array): Float32Array {\n    let norm = 0;\n    for (let i = 0; i < vec.length; i++) {\n        norm += vec[i] * vec[i];\n    }\n    norm = Math.sqrt(norm);\n    if (norm === 0) return new Float32Array(vec.length);\n\n    const result = new Float32Array(vec.length);\n    for (let i = 0; i < vec.length; i++) {\n        result[i] = vec[i] / norm;\n    }\n    return result;\n}\n\n/**\n * Euclidean distance between two vectors.\n */\nexport function euclideanDistance(a: Float32Array, b: Float32Array): number {\n    if (a.length !== b.length) {\n        throw new Error(`Vector dimension mismatch: ${a.length} vs ${b.length}`);\n    }\n    let sum = 0;\n    for (let i = 0; i < a.length; i++) {\n        const d = a[i] - b[i];\n        sum += d * d;\n    }\n    return Math.sqrt(sum);\n}\n\n/**\n * Convert a Float32Array to a Buffer for SQLite storage.\n * Handles views with non-zero byteOffset (e.g. from batched embedding output).\n * Using Buffer.from(vec.buffer) directly is WRONG for views — it copies the entire parent buffer.\n */\nexport function vecToBuffer(vec: Float32Array): Buffer {\n    return Buffer.from(vec.buffer, vec.byteOffset, vec.byteLength);\n}\n","/**\n * BrainBank — Rerank\n * \n * Position-aware score blending between retrieval and reranker.\n * Pure function — no state.\n * \n * Top 1-3:  75% retrieval / 25% reranker (preserves exact matches)\n * Top 4-10: 60% retrieval / 40% reranker\n * Top 11+:  40% retrieval / 60% reranker (trust reranker more)\n */\n\nimport type { Reranker, SearchResult } from '@/types.ts';\n\n/** Re-rank results using position-aware blending. */\nexport async function rerank(\n    query: string,\n    results: SearchResult[],\n    reranker: Reranker,\n): Promise<SearchResult[]> {\n    const documents = results.map(r => r.content);\n    const scores = await reranker.rank(query, documents);\n\n    const blended = results.map((r, i) => {\n        const pos = i + 1;\n        const rrfWeight = pos <= 3 ? 0.75 : pos <= 10 ? 0.60 : 0.40;\n        return {\n            ...r,\n            score: rrfWeight * r.score + (1 - rrfWeight) * (scores[i] ?? 0),\n        };\n    });\n\n    return blended.sort((a, b) => b.score - a.score);\n}\n","/**\n * BrainBank — Reciprocal Rank Fusion (RRF)\n * \n * Combines results from multiple search systems (vector + BM25)\n * using the RRF algorithm: score = Σ 1/(k + rank_i)\n * \n * This is the same algorithm used by Elasticsearch, QMD, and most\n * production hybrid search systems. Simple but very effective.\n * \n * Reference: Cormack et al., \"Reciprocal Rank Fusion outperforms\n * Condorcet and individual Rank Learning Methods\" (2009)\n */\n\nimport type { SearchResult } from '@/types.ts';\n\n/**\n * Fuse ranked lists from different search systems into a single ranked list.\n * \n * @param resultSets - Arrays of SearchResult from different systems (e.g. vector, BM25)\n * @param k - Smoothing constant. Default: 60 (standard value). Higher = less emphasis on top ranks.\n * @param maxResults - Maximum results to return.\n */\nexport function reciprocalRankFusion(\n    resultSets: SearchResult[][],\n    k: number = 60,\n    maxResults: number = 15,\n): SearchResult[] {\n    // Build a map: unique key → { bestResult, rrfScore }\n    const fused = new Map<string, { result: SearchResult; rrfScore: number }>();\n\n    for (const results of resultSets) {\n        for (let rank = 0; rank < results.length; rank++) {\n            const r = results[rank];\n            const key = resultKey(r);\n            const rrfContribution = 1.0 / (k + rank + 1);\n\n            const existing = fused.get(key);\n            if (existing) {\n                existing.rrfScore += rrfContribution;\n                // Keep the result with the higher original score\n                if (r.score > existing.result.score) {\n                    existing.result = { ...r };\n                }\n            } else {\n                fused.set(key, {\n                    result: { ...r },\n                    rrfScore: rrfContribution,\n                });\n            }\n        }\n    }\n\n    // Sort by RRF score descending, normalize, and return\n    const sorted = Array.from(fused.values())\n        .sort((a, b) => b.rrfScore - a.rrfScore)\n        .slice(0, maxResults);\n\n    // Normalize RRF scores to 0..1 range.\n    // Note: A single result always normalizes to 1.0. This is correct for RRF —\n    // the score is relative to the result set, not absolute relevance.\n    // Use minScore filters sparingly with RRF.\n    const maxRRF = sorted[0]?.rrfScore ?? 1;\n    return sorted.map(entry => ({\n        ...entry.result,\n        score: entry.rrfScore / maxRRF,\n        metadata: {\n            ...entry.result.metadata,\n            rrfScore: entry.rrfScore,\n        },\n    }) as SearchResult);\n}\n\n/**\n * Generate a unique key for a search result to detect duplicates across systems.\n */\nfunction resultKey(r: SearchResult): string {\n    switch (r.type) {\n        case 'code':\n            return `code:${r.filePath}:${r.metadata.startLine}-${r.metadata.endLine}`;\n        case 'commit':\n            return `commit:${r.metadata.hash || r.metadata.shortHash}`;\n        case 'document':\n            return `document:${r.filePath ?? ''}:${r.metadata.collection ?? ''}:${r.metadata.seq ?? ''}:${r.content?.slice(0, 80)}`;\n        case 'collection':\n            return `collection:${r.metadata.id ?? r.content?.slice(0, 80)}`;\n    }\n}\n\n/**\n * Generic RRF that works on any type — no SearchResult required.\n *\n * @param lists - Ranked lists from different search systems.\n * @param keyFn - Returns a stable unique string per item.\n * @param scoreFn - Extracts the original score from an item.\n * @param k - Smoothing constant. Default: 60.\n * @param maxResults - Maximum results to return.\n */\nexport function fuseRankedLists<T>(\n    lists: T[][],\n    keyFn: (item: T) => string,\n    scoreFn: (item: T) => number,\n    k: number = 60,\n    maxResults: number = 15,\n): { item: T; score: number }[] {\n    const fused = new Map<string, { item: T; rrfScore: number; bestScore: number }>();\n\n    for (const list of lists) {\n        for (let rank = 0; rank < list.length; rank++) {\n            const item = list[rank];\n            const key = keyFn(item);\n            const contribution = 1.0 / (k + rank + 1);\n            const score = scoreFn(item);\n\n            const existing = fused.get(key);\n            if (existing) {\n                existing.rrfScore += contribution;\n                if (score > existing.bestScore) {\n                    existing.item = item;\n                    existing.bestScore = score;\n                }\n            } else {\n                fused.set(key, { item, rrfScore: contribution, bestScore: score });\n            }\n        }\n    }\n\n    const sorted = [...fused.values()]\n        .sort((a, b) => b.rrfScore - a.rrfScore)\n        .slice(0, maxResults);\n\n    const maxRRF = sorted[0]?.rrfScore ?? 1;\n    return sorted.map(e => ({ item: e.item, score: e.rrfScore / maxRRF }));\n}\n","/**\n * BrainBank — Prune Utility\n *\n * Bridges SearchResult[] → Pruner.prune() → filtered SearchResult[].\n * Converts results to lightweight PrunerItems with full content previews,\n * calls the pruner, and filters out dropped results.\n *\n * Content strategy: send the FULL chunk content to the pruner so it can\n * make informed decisions. A per-item character cap prevents cost blowups\n * on monster files — when truncated, the middle is kept (imports + core\n * logic) rather than just the top.\n */\n\nimport type { Pruner, PrunerItem, SearchResult } from '@/types.ts';\n\n/**\n * Max characters per item sent to the pruner.\n * ~8K chars ≈ 200-250 lines — enough for the model to understand\n * the file's purpose without blowing up token budgets.\n */\nconst MAX_PREVIEW_CHARS = 8_000;\n\n/** Run the pruner on search results. Returns results in the order the pruner chose. */\nexport async function pruneResults(\n    query: string,\n    results: SearchResult[],\n    pruner: Pruner,\n): Promise<SearchResult[]> {\n    if (results.length <= 1) return results;\n\n    // Map results to items with full content (capped per item)\n    const items: PrunerItem[] = results.map((r, i) => ({\n        id: i,\n        filePath: r.filePath ?? 'unknown',\n        preview: _buildPreview(r.content),\n        metadata: r.metadata as Record<string, unknown>,\n    }));\n\n    const keepIds = await pruner.prune(query, items);\n    const validIds = new Set(Array.from({ length: results.length }, (_, i) => i));\n\n    // Respect the pruner's ordering — map IDs to results in returned order\n    return keepIds\n        .filter(id => validIds.has(id))\n        .map(id => results[id]);\n}\n\n/**\n * Build a preview from full content.\n *\n * If the content fits within MAX_PREVIEW_CHARS, return it as-is.\n * For oversized content, keep the first half + last quarter with a\n * \"[... N lines omitted ...]\" marker — this preserves imports/types\n * at the top AND exports/key functions that often live at the bottom.\n */\nfunction _buildPreview(content: string): string {\n    if (content.length <= MAX_PREVIEW_CHARS) return content;\n\n    const lines = content.split('\\n');\n    const totalLines = lines.length;\n\n    // Keep ~60% from top, ~25% from bottom\n    const topCount = Math.floor(totalLines * 0.6);\n    const bottomCount = Math.floor(totalLines * 0.25);\n    const omitted = totalLines - topCount - bottomCount;\n\n    const topPart = lines.slice(0, topCount).join('\\n');\n    const bottomPart = lines.slice(totalLines - bottomCount).join('\\n');\n\n    return `${topPart}\\n\\n// [... ${omitted} lines omitted ...]\\n\\n${bottomPart}`;\n}\n","/**\n * BrainBank — BM25 Intersection Boost\n *\n * Pure functions for post-processing vector search results with BM25 keyword overlap.\n * Extracted from ContextBuilder for single-responsibility and testability.\n */\n\nimport type { SearchResult } from '@/types.ts';\nimport type { SearchStrategy } from './types.ts';\n\n/** BM25 boost factor applied to vector results that also match keywords. */\nexport const BM25_BOOST = 0.15;\n\n/**\n * Boost vector results that also appear in BM25 keyword results.\n * Does NOT add new results — only re-scores and re-sorts existing vector hits.\n * This promotes keyword-relevant files without introducing BM25-only noise.\n */\nexport async function boostWithBM25(\n    vectorResults: SearchResult[],\n    bm25: SearchStrategy,\n    query: string,\n    sources: Record<string, number>,\n): Promise<SearchResult[]> {\n    if (vectorResults.length === 0) return vectorResults;\n\n    const bm25Results = await bm25.search(query, { sources });\n    if (bm25Results.length === 0) return vectorResults;\n\n    // Build a set of BM25 hit keys for fast lookup\n    const bm25Keys = new Set<string>();\n    for (const r of bm25Results) {\n        bm25Keys.add(resultKey(r));\n    }\n\n    // Boost scores of vector results that also appear in BM25\n    const boosted = vectorResults.map(r => {\n        const k = resultKey(r);\n        if (bm25Keys.has(k)) {\n            return { ...r, score: r.score + BM25_BOOST };\n        }\n        return r;\n    });\n\n    // Re-sort by boosted score\n    boosted.sort((a, b) => b.score - a.score);\n    return boosted;\n}\n\n/** Filter results whose filePath starts with `prefix`. */\nexport function filterByPath(results: SearchResult[], prefix: string | undefined): SearchResult[] {\n    if (!prefix) return results;\n    return results.filter(r => r.filePath?.startsWith(prefix));\n}\n\n/** Exclude results whose filePath starts with any of the given prefixes. */\nexport function filterByIgnore(results: SearchResult[], ignorePaths: string[] | undefined): SearchResult[] {\n    if (!ignorePaths || ignorePaths.length === 0) return results;\n    return results.filter(r => !r.filePath || !ignorePaths.some(p => r.filePath!.startsWith(p)));\n}\n\n/** Generate a dedup key for a search result (file:startLine:endLine). */\nexport function resultKey(r: SearchResult): string {\n    const sl = 'startLine' in r.metadata ? r.metadata.startLine : '';\n    const el = 'endLine' in r.metadata ? r.metadata.endLine : '';\n    return `${r.filePath ?? ''}:${sl}:${el}`;\n}\n","/**\n * BrainBank — Query Debug Logger\n *\n * Appends structured, human-readable entries to /tmp/brainbank.log.\n * Covers all search operations: getContext, search, hybridSearch, searchBM25.\n * Truncates at 10 MB (keeps the newest half).\n *\n * Layer 0 — pure functions, no state.\n */\n\nimport * as fs from 'node:fs';\n\nconst LOG_PATH = '/tmp/brainbank.log';\nconst MAX_BYTES = 10 * 1024 * 1024; // 10 MB\n\n// ── Public Types ─────────────────────────────────────\n\nexport type QuerySource = 'cli' | 'mcp' | 'daemon' | 'api';\n\nexport interface QueryLogEntry {\n    source: QuerySource;\n    method: 'getContext' | 'search' | 'hybridSearch' | 'searchBM25';\n    query: string;\n    embedding: string;\n    pruner: string | null;\n    reranker: string | null;\n    options: Record<string, unknown>;\n    results: QueryLogResult[];\n    pruned?: QueryLogResult[];\n    durationMs: number;\n}\n\nexport interface QueryLogResult {\n    filePath: string;\n    score: number;\n    type: string;\n    name?: string;\n}\n\n// ── Public API ───────────────────────────────────────\n\n/** Append a query log entry to /tmp/brainbank.log. Never throws. */\nexport function logQuery(entry: QueryLogEntry): void {\n    try {\n        _truncateIfNeeded();\n        fs.appendFileSync(LOG_PATH, _formatEntry(entry));\n    } catch {\n        // Logging must never break the app\n    }\n}\n\n// ── Formatting ───────────────────────────────────────\n\nfunction _formatEntry(e: QueryLogEntry): string {\n    const divider = '═'.repeat(70);\n    const lines: string[] = [\n        '',\n        divider,\n        `[${new Date().toISOString()}] ${e.source.toUpperCase()} · ${e.method}`,\n        `Query: \"${e.query}\"`,\n        `Embedding: ${e.embedding} | Pruner: ${e.pruner ?? 'none'} | Reranker: ${e.reranker ?? 'none'}`,\n    ];\n\n    // Options (sources, path, etc.)\n    const opts = Object.entries(e.options).filter(([, v]) => v !== undefined);\n    if (opts.length > 0) {\n        const parts = opts.map(([k, v]) =>\n            `${k}: ${typeof v === 'object' ? JSON.stringify(v) : String(v)}`\n        );\n        lines.push(parts.join(' | '));\n    }\n\n    lines.push(`Duration: ${e.durationMs}ms`);\n    lines.push('');\n\n    // Results\n    const resultCount = e.results.length;\n    const prunedCount = e.pruned?.length ?? 0;\n    const header = prunedCount > 0\n        ? `Results (${resultCount + prunedCount} → ${resultCount} after pruning):`\n        : `Results (${resultCount}):`;\n    lines.push(header);\n\n    for (let i = 0; i < e.results.length; i++) {\n        const r = e.results[i];\n        const pct = Math.round(r.score * 100);\n        const name = r.name ? `[${r.name}]` : '';\n        lines.push(`  #${String(i + 1).padStart(2)}  ${String(pct).padStart(3)}% ${r.filePath.padEnd(45)} ${name}`);\n    }\n\n    // Pruned items\n    if (e.pruned && e.pruned.length > 0) {\n        lines.push('');\n        lines.push(`Pruned (${e.pruned.length} removed):`);\n        for (const r of e.pruned) {\n            const name = r.name ? `[${r.name}]` : '';\n            lines.push(`  ✗ ${r.filePath.padEnd(45)} ${name}`);\n        }\n    }\n\n    lines.push(divider);\n    lines.push('');\n\n    return lines.join('\\n');\n}\n\n// ── Truncation ───────────────────────────────────────\n\nfunction _truncateIfNeeded(): void {\n    try {\n        const stat = fs.statSync(LOG_PATH);\n        if (stat.size < MAX_BYTES) return;\n\n        // Keep the newest half\n        const content = fs.readFileSync(LOG_PATH, 'utf-8');\n        const half = Math.floor(content.length / 2);\n        // Find the next entry boundary after the midpoint\n        const nextEntry = content.indexOf('\\n═', half);\n        if (nextEntry > 0) {\n            fs.writeFileSync(LOG_PATH, '[truncated]\\n' + content.slice(nextEntry + 1));\n        }\n    } catch {\n        // File doesn't exist yet — fine\n    }\n}\n","/**\n * BrainBank — Context Builder\n *\n * Orchestrates the context-building pipeline:\n *   1. Vector search (primary)\n *   2. Path scoping (filter)\n *   3. LLM noise pruning (optional)\n *   4. Session dedup (filter)\n *   5. LLM context expansion (optional — expander field)\n *   6. Plugin formatters (output)\n *\n * All search post-processing lives in `bm25-boost.ts`.\n * Plugin-agnostic — discovers formatters from ContextFormatterPlugin.\n */\n\nimport type { ContextOptions, EmbeddingProvider, Expander, ExpanderManifestItem, Pruner, SearchResult } from '@/types.ts';\nimport type { SearchStrategy } from './types.ts';\nimport type { PluginRegistry } from '@/services/plugin-registry.ts';\n\nimport { isContextFormatterPlugin, isContextFieldPlugin, isExpandablePlugin, isSearchable } from '@/plugin.ts';\nimport { filterByPath, filterByIgnore } from './bm25-boost.ts';\nimport { pruneResults } from '@/lib/prune.ts';\nimport { logQuery } from '@/lib/logger.ts';\nimport type { QueryLogResult } from '@/lib/logger.ts';\nimport { providerKey } from '@/lib/provider-key.ts';\n\nexport class ContextBuilder {\n    constructor(\n        private _search: SearchStrategy | undefined,\n        private _registry: PluginRegistry,\n        private _pruner?: Pruner,\n        private _embedding?: EmbeddingProvider,\n        private _rerankerName?: string,\n        private _configFields: Record<string, unknown> = {},\n        private _expander?: Expander,\n    ) {}\n\n    /** Set config-level context field defaults (from config.json \"context\" section). */\n    set configFields(fields: Record<string, unknown>) {\n        this._configFields = fields;\n    }\n\n    /** Set the expander instance. */\n    set expander(expander: Expander | undefined) {\n        this._expander = expander;\n    }\n\n    /** Build a full context block for a task. Returns markdown for system prompt. */\n    async build(task: string, options: ContextOptions = {}): Promise<string> {\n        const t0 = Date.now();\n        const src = options.sources ?? {};\n        const { minScore = 0.25, useMMR = true, mmrLambda = 0.7 } = options;\n\n        // 1. Primary: vector search (includes per-repo BM25 fusion internally)\n        let results: SearchResult[] = this._search\n            ? await this._search.search(task, {\n                sources: src,\n                minScore, useMMR, mmrLambda,\n            })\n            : [];\n\n        // 2. Path scoping + ignore filtering\n        results = filterByPath(results, options.pathPrefix);\n        results = filterByIgnore(results, options.ignorePaths);\n\n        // 3. LLM noise pruning (optional — per-request override or construction-time)\n        const pruner = options.pruner ?? this._pruner;\n        const beforePrune = results;\n        if (pruner && results.length > 1) {\n            results = await pruneResults(task, results, pruner);\n        }\n\n        // 4. Exclude already-returned files (session dedup)\n        if (options.excludeFiles && options.excludeFiles.size > 0) {\n            results = results.filter(r => !r.filePath || !options.excludeFiles!.has(r.filePath));\n        }\n\n        // 5. LLM context expansion (optional — only when expander field is enabled)\n        const resolvedFields = this._resolveFields(options);\n        let expanderNote: string | undefined;\n        if (resolvedFields.expander === true && this._expander && results.length > 0) {\n            const expansion = await this._expand(task, results);\n            if (expansion.results.length > 0) {\n                results = [...results, ...expansion.results];\n            }\n            expanderNote = expansion.note;\n        }\n\n        // 6. Format output\n        const parts: string[] = [`# Context for: \"${task}\"\\n`];\n        this._appendFormatterResults(results, parts, options, resolvedFields);\n        await this._appendSearchableResults(task, src, minScore, parts);\n\n        // 7. Append expander note (last section)\n        if (expanderNote) {\n            parts.push(`\\n## Expansion Notes\\n\\n${expanderNote}\\n`);\n        }\n\n        // ── Log ──\n        const prunedResults = pruner\n            ? beforePrune.filter(r => !results.includes(r))\n            : [];\n        logQuery({\n            source: options.source ?? 'api',\n            method: 'getContext',\n            query: task,\n            embedding: this._embedding ? providerKey(this._embedding) : 'unknown',\n            pruner: pruner ? _prunerName(pruner) : null,\n            reranker: this._rerankerName ?? null,\n            options: {\n                sources: src,\n                pathPrefix: options.pathPrefix,\n                ignorePaths: options.ignorePaths,\n                minScore,\n                affectedFiles: options.affectedFiles,\n            },\n            results: results.map(_toLogResult),\n            pruned: prunedResults.length > 0 ? prunedResults.map(_toLogResult) : undefined,\n            durationMs: Date.now() - t0,\n        });\n\n        return parts.join('\\n');\n    }\n\n    /** Invoke ContextFormatterPlugins. Multi-repo: each plugin formats its own results. */\n    private _appendFormatterResults(\n        results: SearchResult[],\n        parts: string[],\n        options: ContextOptions,\n        resolvedFields?: Record<string, unknown>,\n    ): void {\n        const fields = resolvedFields ?? this._resolveFields(options);\n        const seenFormatters = new Set<string>();\n\n        for (const mod of this._registry.all) {\n            if (!isContextFormatterPlugin(mod)) continue;\n            const baseType = mod.name.split(':')[0];\n\n            // Multi-repo plugin (e.g. 'code:servicehub-frontend'):\n            // scope results to this repo and let each plugin format its own\n            const colonIdx = mod.name.indexOf(':');\n            if (colonIdx > 0) {\n                const repoPrefix = mod.name.slice(colonIdx + 1);\n                const scoped = results.filter(r =>\n                    r.filePath?.startsWith(repoPrefix + '/'),\n                );\n                if (scoped.length > 0) {\n                    mod.formatContext(scoped, parts, fields);\n                }\n                continue;\n            }\n\n            // Single-repo plugin: dedup by base type (old behavior)\n            if (seenFormatters.has(baseType)) continue;\n            seenFormatters.add(baseType);\n            mod.formatContext(results, parts, fields);\n        }\n    }\n\n    /**\n     * Resolve context fields: plugin defaults ← config.json ← per-query.\n     * Returns a flat Record with the final value for each field.\n     */\n    private _resolveFields(options: ContextOptions): Record<string, unknown> {\n        // 1. Collect plugin defaults\n        const defaults: Record<string, unknown> = {};\n        for (const mod of this._registry.all) {\n            if (isContextFieldPlugin(mod)) {\n                for (const field of mod.contextFields()) {\n                    defaults[field.name] = field.default;\n                }\n            }\n        }\n\n        // 2. Merge: defaults ← config ← per-query\n        return { ...defaults, ...this._configFields, ...(options.fields ?? {}) };\n    }\n\n    /**\n     * Run LLM expansion: build manifest of candidate chunks from files\n     * NOT already in search results, call expander, resolve selected IDs.\n     */\n    private async _expand(task: string, results: SearchResult[]): Promise<{ results: SearchResult[]; note?: string }> {\n        if (!this._expander) return { results: [] };\n\n        // Detect multi-repo prefix from results (e.g. 'servicehub-frontend')\n        // Results have prefixed filePaths like 'servicehub-frontend/src/...'\n        // but DB chunks have unprefixed paths like 'src/...'\n        const repoPrefix = this._detectRepoPrefix(results);\n\n        // Collect unique file paths already in results (strip repo prefix for DB match)\n        const excludeFilePaths = [...new Set(\n            results.filter(r => r.filePath).map(r => {\n                const fp = r.filePath as string;\n                return repoPrefix && fp.startsWith(repoPrefix + '/') ? fp.slice(repoPrefix.length + 1) : fp;\n            }),\n        )];\n\n        // Collect current chunk IDs (to exclude from manifest)\n        const excludeIds: number[] = [];\n        for (const r of results) {\n            const meta = r.metadata as Record<string, unknown> | undefined;\n            const id = meta?.id as number | undefined;\n            if (id !== undefined) excludeIds.push(id);\n        }\n\n        // Build manifest + resolve from the MATCHING ExpandablePlugin only\n        // In multi-repo, expand only from the plugin whose name matches the result set's repo\n        const manifest: ExpanderManifestItem[] = [];\n        let resolver: ((ids: number[]) => SearchResult[]) | undefined;\n        for (const mod of this._registry.all) {\n            if (!isExpandablePlugin(mod)) continue;\n\n            // In multi-repo, only expand from the plugin matching the result set's repo\n            // e.g. 'code:servicehub-frontend' matches repoPrefix 'servicehub-frontend'\n            const colonIdx = mod.name.indexOf(':');\n            const pluginRepo = colonIdx > 0 ? mod.name.slice(colonIdx + 1) : undefined;\n            if (repoPrefix && pluginRepo && pluginRepo !== repoPrefix) continue;\n\n            manifest.push(...mod.buildManifest(excludeFilePaths, excludeIds));\n            if (!resolver) {\n                const prefix = pluginRepo;\n                resolver = (ids: number[]) => {\n                    const chunks = mod.resolveChunks(ids);\n                    // Add repo prefix back to resolved chunk filePaths\n                    if (prefix) {\n                        for (const chunk of chunks) {\n                            if (chunk.filePath) chunk.filePath = `${prefix}/${chunk.filePath}`;\n                            const meta = chunk.metadata as Record<string, unknown>;\n                            if (typeof meta.filePath === 'string') {\n                                meta.filePath = `${prefix}/${meta.filePath}`;\n                            }\n                        }\n                    }\n                    return chunks;\n                };\n            }\n        }\n        if (manifest.length === 0 || !resolver) return { results: [] };\n\n        // Call expander\n        try {\n            const expandResult = await this._expander.expand(task, excludeIds, manifest);\n            if (expandResult.ids.length === 0) return { results: [], note: expandResult.note };\n            return { results: resolver(expandResult.ids), note: expandResult.note };\n        } catch {\n            // Fail-open: expansion errors are non-fatal\n            return { results: [] };\n        }\n    }\n\n    /** Detect the multi-repo prefix from existing results (e.g. 'servicehub-frontend'). */\n    private _detectRepoPrefix(results: SearchResult[]): string | undefined {\n        for (const r of results) {\n            if (!r.filePath) continue;\n            // Multi-repo filePaths look like 'servicehub-frontend/src/...'\n            // The repo prefix is the first path segment before 'src/'\n            const srcIdx = r.filePath.indexOf('/src/');\n            if (srcIdx > 0) return r.filePath.slice(0, srcIdx);\n        }\n        return undefined;\n    }\n\n    /** Collect results from SearchablePlugins that don't have their own formatter. */\n    private async _appendSearchableResults(\n        task: string,\n        sources: Record<string, number>,\n        minScore: number,\n        parts: string[],\n    ): Promise<void> {\n        for (const mod of this._registry.all) {\n            if (isContextFormatterPlugin(mod)) continue;\n            if (!isSearchable(mod)) continue;\n            const hits = await mod.search(task, { k: sources[mod.name.split(':')[0]] ?? 6, minScore });\n            if (hits.length > 0) {\n                parts.push(`## ${mod.name}\\n`);\n                for (const r of hits) {\n                    parts.push(`- [${Math.round(r.score * 100)}%] ${r.content.slice(0, 200)}`);\n                }\n                parts.push('');\n            }\n        }\n    }\n}\n\n// ── Helpers ──────────────────────────────────────────\n\nfunction _toLogResult(r: SearchResult): QueryLogResult {\n    const meta = r.metadata as Record<string, unknown> | undefined;\n    return {\n        filePath: r.filePath ?? 'unknown',\n        score: r.score,\n        type: r.type,\n        name: (meta?.name as string | undefined) ?? undefined,\n    };\n}\n\nfunction _prunerName(pruner: Pruner): string {\n    return pruner.constructor?.name ?? 'custom';\n}\n","/**\n * BrainBank — Composite BM25 Search Strategy\n *\n * Generic BM25 coordinator that discovers BM25SearchPlugin instances\n * from the registry and delegates per-source keyword search.\n */\n\nimport type { SearchResult } from '@/types.ts';\nimport type { SearchStrategy, SearchOptions } from '@/search/types.ts';\nimport type { PluginRegistry } from '@/services/plugin-registry.ts';\n\nimport { isBM25SearchPlugin } from '@/plugin.ts';\n\nconst DEFAULT_K = 8;\n\nexport class CompositeBM25Search implements SearchStrategy {\n    constructor(private _registry: PluginRegistry) {}\n\n    /**\n     * Run BM25 keyword search across all plugins that implement BM25SearchPlugin.\n     * Each plugin searches its own FTS5 tables.\n     */\n    async search(query: string, options: SearchOptions = {}): Promise<SearchResult[]> {\n        const src = options.sources ?? {};\n        const results: SearchResult[] = [];\n\n        for (const plugin of this._registry.all) {\n            if (!isBM25SearchPlugin(plugin)) continue;\n\n            const baseType = plugin.name.split(':')[0];\n            const k = src[baseType] ?? DEFAULT_K;\n            if (k <= 0) continue;\n\n            const hits = plugin.searchBM25(query, k);\n\n            // Multi-repo: prefix filePaths with sub-repo name (same as CompositeVectorSearch)\n            const colonIdx = plugin.name.indexOf(':');\n            if (colonIdx > 0) {\n                const subRepo = plugin.name.slice(colonIdx + 1);\n                for (const hit of hits) {\n                    if (hit.filePath) hit.filePath = `${subRepo}/${hit.filePath}`;\n                    const meta = hit.metadata as Record<string, unknown>;\n                    if (typeof meta.filePath === 'string') {\n                        meta.filePath = `${subRepo}/${meta.filePath}`;\n                    }\n                }\n            }\n\n            results.push(...hits);\n        }\n\n        return results.sort((a, b) => b.score - a.score);\n    }\n\n    /** Rebuild FTS5 indices across all BM25 plugins. */\n    rebuild(): void {\n        for (const plugin of this._registry.all) {\n            if (!isBM25SearchPlugin(plugin)) continue;\n            plugin.rebuildFTS?.();\n        }\n    }\n}\n","/**\n * BrainBank — Composite Vector Search\n *\n * Generic orchestrator for domain-specific vector searches.\n * Embeds the query once, delegates to registered DomainVectorSearch strategies.\n * Uses round-robin interleaving when multiple strategies exist to ensure\n * balanced representation across repos/domains.\n * Plugin-agnostic — strategies are discovered at wiring time.\n */\n\nimport type { EmbeddingProvider, SearchResult } from '@/types.ts';\nimport type { SearchStrategy, SearchOptions, DomainVectorSearch } from '@/search/types.ts';\n\nexport interface CompositeVectorConfig {\n    strategies: Map<string, DomainVectorSearch>;\n    embedding: EmbeddingProvider;\n    /** Default K values per strategy name. Strategies not listed default to 0. */\n    defaults?: Record<string, number>;\n}\n\nexport class CompositeVectorSearch implements SearchStrategy {\n    /** Default K when no source override is provided. */\n    private static readonly DEFAULT_K = 6;\n\n    constructor(private _c: CompositeVectorConfig) {}\n\n    /** Search across all registered domain strategies with score-based merge. */\n    async search(query: string, options: SearchOptions = {}): Promise<SearchResult[]> {\n        const src = options.sources ?? {};\n        const { minScore = 0.25, useMMR = true, mmrLambda = 0.7 } = options;\n\n        const queryVec = await this._c.embedding.embed(query);\n\n        // Each strategy gets full K for ranking quality, cap total after merge\n        const allResults: SearchResult[] = [];\n        let requestedK = 0;\n\n        for (const [name, strategy] of this._c.strategies) {\n            const baseName = name.split(':')[0];\n            const k = src[name] ?? src[baseName] ?? this._c.defaults?.[name] ?? CompositeVectorSearch.DEFAULT_K;\n            if (k <= 0) continue;\n            requestedK = Math.max(requestedK, k);\n            const hits = strategy.search(queryVec, k, minScore, useMMR, mmrLambda, query);\n\n            // Multi-repo: prefix filePaths with sub-repo name so path filtering works\n            // e.g. strategy 'code:servicehub-backend' → filePath 'servicehub-backend/src/app.ts'\n            const colonIdx = name.indexOf(':');\n            if (colonIdx > 0) {\n                const subRepo = name.slice(colonIdx + 1);\n                for (const hit of hits) {\n                    if (hit.filePath) hit.filePath = `${subRepo}/${hit.filePath}`;\n                    const meta = hit.metadata as Record<string, unknown>;\n                    if (typeof meta.filePath === 'string') {\n                        meta.filePath = `${subRepo}/${meta.filePath}`;\n                    }\n                }\n            }\n\n            allResults.push(...hits);\n        }\n\n        if (allResults.length === 0) return [];\n\n        // Sort by raw rrfScore (comparable across repos), cap to requested K\n        allResults.sort((a, b) => b.score - a.score);\n        const capped = allResults.slice(0, requestedK);\n\n        // Normalize scores 0-1 globally\n        const maxScore = capped[0].score;\n        if (maxScore > 0) {\n            for (const r of capped) r.score = r.score / maxScore;\n        }\n\n        return capped;\n    }\n}\n","/**\n * BrainBank — HNSW Vector Index\n * \n * Wraps hnswlib-node for O(log n) approximate nearest neighbor search.\n * M=16 connections, ef=200 construction, ef=50 search by default.\n * 150x faster than brute force at 1M vectors.\n *\n * Supports disk persistence: save(path) / tryLoad(path, count)\n * to skip costly vector-by-vector rebuild on startup.\n */\n\nimport type { VectorIndex, SearchHit } from '@/types.ts';\n\nimport { existsSync } from 'node:fs';\n\n/** Shape of the HNSW index from hnswlib-node. */\ninterface HnswlibIndex {\n    initIndex(maxElements: number, M: number, efConstruction: number): void;\n    setEf(ef: number): void;\n    addPoint(vector: number[], id: number): void;\n    markDelete(id: number): void;\n    searchKnn(vector: number[], k: number): { neighbors: number[]; distances: number[] };\n    writeIndexSync(path: string): void;\n    readIndexSync(path: string): void;\n    getCurrentCount(): number;\n    getIdsList(): number[];\n}\n\n/** Shape of the hnswlib-node module (supports default + named exports). */\ninterface HnswlibModule {\n    default?: { HierarchicalNSW: new (space: 'cosine' | 'l2' | 'ip', dims: number) => HnswlibIndex };\n    HierarchicalNSW?: new (space: 'cosine' | 'l2' | 'ip', dims: number) => HnswlibIndex;\n}\n\nexport class HNSWIndex implements VectorIndex {\n    private _index: HnswlibIndex | null = null;\n    private _lib: HnswlibModule | null = null;\n    private _ids = new Set<number>();\n\n    constructor(\n        private _dims: number,\n        private _maxElements: number = 2_000_000,\n        private _M: number = 16,\n        private _efConstruction: number = 200,\n        private _efSearch: number = 50,\n    ) {}\n\n    /**\n     * Initialize the HNSW index.\n     * Must be called before add/search.\n     */\n    async init(): Promise<this> {\n        this._lib = await import('hnswlib-node');\n        this._createIndex();\n        return this;\n    }\n\n    /**\n     * Reinitialize the index in-place, clearing all vectors.\n     * Required after reembed or full re-index to avoid duplicate IDs.\n     * init() must have been called first.\n     */\n    reinit(): void {\n        if (!this._lib) throw new Error('HNSW not initialized — call init() first');\n        this._createIndex();\n    }\n\n    private _createIndex(): void {\n        if (!this._lib) throw new Error('HNSW lib not loaded');\n        const HNSW = this._lib.default?.HierarchicalNSW ?? this._lib.HierarchicalNSW;\n        if (!HNSW) throw new Error('HierarchicalNSW not found in hnswlib-node module');\n        this._index = new HNSW('cosine', this._dims);\n        this._index.initIndex(this._maxElements, this._M, this._efConstruction);\n        this._index.setEf(this._efSearch);\n        this._ids = new Set();\n    }\n\n    /** Maximum capacity of this index. */\n    get maxElements(): number { return this._maxElements; }\n\n    /**\n     * Add a vector with an integer ID.\n     * The vector should be pre-normalized for cosine distance.\n     */\n    add(vector: Float32Array, id: number): void {\n        if (!this._index) throw new Error('HNSW index not initialized — call init() first');\n        if (this._ids.has(id)) return; // idempotent: skip duplicates\n        if (this._ids.size >= this._maxElements) {\n            throw new Error(\n                `HNSW index full (${this._maxElements} elements). ` +\n                `Increase maxElements in config or prune old data.`\n            );\n        }\n        this._index.addPoint(Array.from(vector), id);\n        this._ids.add(id);\n    }\n\n    /**\n     * Mark a vector as deleted so it no longer appears in searches.\n     * Uses hnswlib-node markDelete under the hood.\n     * Safe to call with an ID that doesn't exist.\n     */\n    remove(id: number): void {\n        if (!this._index || this._ids.size === 0) return;\n        if (!this._ids.has(id)) return;\n        try {\n            this._index.markDelete(id);\n            this._ids.delete(id);\n        } catch {\n            // ID not found — ignore silently\n        }\n    }\n\n    /**\n     * Search for the k nearest neighbors.\n     * Returns results sorted by score (highest first).\n     * Score is 1 - cosine_distance (1.0 = identical).\n     */\n    search(query: Float32Array, k: number): SearchHit[] {\n        if (!this._index || this._ids.size === 0) return [];\n\n        const actualK = Math.min(k, this._ids.size);\n        const result = this._index.searchKnn(Array.from(query), actualK);\n\n        return result.neighbors.map((id: number, i: number) => ({\n            id,\n            score: 1 - result.distances[i],\n        }));\n    }\n\n    /** Number of vectors in the index. */\n    get size(): number {\n        return this._ids.size;\n    }\n\n    /**\n     * Save the HNSW graph to disk.\n     * The file can be loaded later with tryLoad() to skip vector-by-vector insertion.\n     */\n    save(path: string): void {\n        if (!this._index || this._ids.size === 0) return;\n        this._index.writeIndexSync(path);\n    }\n\n    /**\n     * Try to load a previously saved HNSW index from disk.\n     * Returns true if loaded successfully, false if stale or missing.\n     * @param path File path to the saved index\n     * @param expectedCount Expected number of vectors (from SQLite) — used to detect staleness\n     */\n    tryLoad(path: string, expectedCount: number): boolean {\n        if (!this._index || !existsSync(path)) return false;\n\n        try {\n            this._index.readIndexSync(path);\n            const loadedCount = this._index.getCurrentCount();\n\n            // Stale: vector count in DB differs from saved index\n            if (loadedCount !== expectedCount) {\n                this.reinit();\n                return false;\n            }\n\n            // Rebuild _ids set from the loaded index\n            const ids = this._index.getIdsList();\n            this._ids = new Set(ids);\n            this._index.setEf(this._efSearch);\n            return true;\n        } catch {\n            this.reinit();\n            return false;\n        }\n    }\n}\n","/**\n * BrainBank — FTS Utilities\n * \n * Shared helpers for SQLite FTS5 query sanitization.\n */\n\n/**\n * Split camelCase, PascalCase, and snake_case into individual words.\n *   \"MagicLinkCallback\" → \"Magic Link Callback\"\n *   \"tenant_worker\"     → \"tenant worker\"\n */\nfunction splitCompound(word: string): string {\n    return word\n        .replace(/([a-z])([A-Z])/g, '$1 $2')   // camelCase → camel Case\n        .replace(/([A-Z]+)([A-Z][a-z])/g, '$1 $2') // HTMLParser → HTML Parser\n        .replace(/[_\\-./\\\\]/g, ' ')              // snake_case, kebab-case, paths\n        .trim();\n}\n\n/**\n * Sanitize a user query for FTS5 syntax.\n * Strips operators that would cause parse errors, splits compound words,\n * and converts words to implicit AND with exact-match quoting.\n */\nexport function sanitizeFTS(query: string): string {\n    const clean = query\n        .replace(/[{}[\\]()^~*:]/g, ' ')\n        .replace(/\\bAND\\b|\\bOR\\b|\\bNOT\\b|\\bNEAR\\b/gi, '')\n        .trim();\n\n    // Split compound words (camelCase, PascalCase, snake_case)\n    const expanded = clean.split(/\\s+/)\n        .map(w => splitCompound(w))\n        .join(' ');\n\n    const words = expanded.split(/\\s+/).filter(w => w.length > 1);\n    if (words.length === 0) return '';\n\n    return words.map(w => `\"${w}\"`).join(' ');\n}\n\n/**\n * Normalize BM25 score from SQLite (negative, lower = better)\n * to 0.0–1.0 (higher = better) for consistency with vector search.\n */\nexport function normalizeBM25(rawScore: number): number {\n    const abs = Math.abs(rawScore);\n    return 1.0 / (1.0 + Math.exp(-0.3 * (abs - 5)));\n}\n\n/**\n * Escape SQL LIKE wildcard characters (`%`, `_`, `\\`).\n * Use with `LIKE ? ESCAPE '\\'` in queries.\n */\nexport function escapeLike(s: string): string {\n    return s.replace(/[%_\\\\]/g, '\\\\$&');\n}\n","/**\n * BrainBank — Collection\n * \n * Universal key-value store with vector + BM25 hybrid search.\n * The foundation primitive — store anything, search semantically.\n * \n *   const errors = brain.collection('debug_errors');\n *   await errors.add('Fixed null check in api handler', { file: 'api.ts' });\n *   const hits = await errors.search('null pointer');\n */\n\nimport type { DatabaseAdapter, KvDataRow, CountRow } from '@/db/adapter.ts';\nimport type { HNSWIndex } from '@/providers/vector/hnsw-index.ts';\nimport type { EmbeddingProvider, Reranker, SearchResult } from '@/types.ts';\n\nimport { sanitizeFTS, normalizeBM25 } from '@/lib/fts.ts';\nimport { vecToBuffer } from '@/lib/math.ts';\nimport { rerank } from '@/lib/rerank.ts';\nimport { fuseRankedLists } from '@/lib/rrf.ts';\n\nexport interface CollectionItem {\n    id: number;\n    collection: string;\n    content: string;\n    metadata: Record<string, unknown>;\n    tags: string[];\n    createdAt: number;\n    expiresAt?: number;\n    score?: number;\n}\n\nexport interface CollectionSearchOptions {\n    /** Max results. Default: 5 */\n    k?: number;\n    /** Search mode. Default: 'hybrid' */\n    mode?: 'hybrid' | 'vector' | 'keyword';\n    /** Minimum score threshold. Default: 0.15 */\n    minScore?: number;\n    /** Filter by tags (item must have ALL specified tags). */\n    tags?: string[];\n}\n\nexport interface CollectionAddOptions {\n    /** Metadata key-value pairs. */\n    metadata?: Record<string, unknown>;\n    /** Tags for filtering. */\n    tags?: string[];\n    /** Time-to-live duration string (e.g. '7d', '24h', '30m'). */\n    ttl?: string;\n}\n\nexport class Collection {\n    constructor(\n        private _name: string,\n        private _db: DatabaseAdapter,\n        private _embedding: EmbeddingProvider,\n        private _hnsw: HNSWIndex,\n        private _vecs: Map<number, Float32Array>,\n        private _reranker?: Reranker,\n    ) {}\n\n    /** Collection name. */\n    get name(): string { return this._name; }\n\n    /** Add an item. Returns its ID. */\n    async add(content: string, options: CollectionAddOptions | Record<string, unknown> = {}): Promise<number> {\n        // Support both signatures: add(content, { metadata, tags, ttl }) and add(content, metadata)\n        const opts = 'tags' in options || 'ttl' in options || 'metadata' in options\n            ? options as CollectionAddOptions\n            : { metadata: options as Record<string, unknown> };\n\n        const metadata = opts.metadata ?? {};\n        const tags = opts.tags ?? [];\n        const expiresAt = opts.ttl ? Math.floor(Date.now() / 1000) + parseDuration(opts.ttl) : null;\n\n        // Embed FIRST — if this throws, no orphaned rows are left in kv_data\n        const vec = await this._embedding.embed(content);\n\n        const result = this._db.prepare(\n            'INSERT INTO kv_data (collection, content, meta_json, tags_json, expires_at) VALUES (?, ?, ?, ?, ?)'\n        ).run(this._name, content, JSON.stringify(metadata), JSON.stringify(tags), expiresAt);\n\n        const id = Number(result.lastInsertRowid);\n        this._db.prepare(\n            'INSERT INTO kv_vectors (data_id, embedding) VALUES (?, ?)'\n        ).run(id, vecToBuffer(vec));\n\n        this._hnsw.add(vec, id);\n        this._vecs.set(id, vec);\n\n        return id;\n    }\n\n    /** Update an item's content (re-embeds). Returns the new ID. */\n    async update(id: number, content: string, options?: CollectionAddOptions): Promise<number> {\n        const row = this._db.prepare(\n            'SELECT * FROM kv_data WHERE id = ? AND collection = ?'\n        ).get(id, this._name) as KvDataRow | undefined;\n\n        if (!row) throw new Error(`BrainBank: Item ${id} not found in collection '${this._name}'.`);\n\n        // Merge: keep original metadata/tags unless overridden\n        const metadata = options?.metadata ?? JSON.parse(row.meta_json || '{}');\n        const tags = options?.tags ?? JSON.parse(row.tags_json || '[]');\n        const ttl = options?.ttl;\n\n        this._removeById(id);\n        return this.add(content, { metadata, tags, ...(ttl ? { ttl } : {}) });\n    }\n\n    /** Add multiple items. Returns their IDs. */\n    async addMany(items: { content: string; metadata?: Record<string, unknown>; tags?: string[]; ttl?: string }[]): Promise<number[]> {\n        if (items.length === 0) return [];\n\n        // Batch embed all texts at once\n        const texts = items.map(i => i.content);\n        const vecs = await this._embedding.embedBatch(texts);\n\n        // Commit DB rows atomically. HNSW is updated ONLY after this succeeds.\n        // If the transaction throws, execution never reaches the HNSW loop below.\n        const ids: number[] = [];\n        const insertData = this._db.prepare(\n            'INSERT INTO kv_data (collection, content, meta_json, tags_json, expires_at) VALUES (?, ?, ?, ?, ?)'\n        );\n        const insertVec = this._db.prepare(\n            'INSERT INTO kv_vectors (data_id, embedding) VALUES (?, ?)'\n        );\n\n        this._db.transaction(() => {\n            for (let i = 0; i < items.length; i++) {\n                const item = items[i];\n                const expiresAt = item.ttl ? Math.floor(Date.now() / 1000) + parseDuration(item.ttl) : null;\n\n                const result = insertData.run(\n                    this._name,\n                    item.content,\n                    JSON.stringify(item.metadata ?? {}),\n                    JSON.stringify(item.tags ?? []),\n                    expiresAt,\n                );\n\n                const id = Number(result.lastInsertRowid);\n                insertVec.run(id, vecToBuffer(vecs[i]));\n                ids.push(id);\n            }\n        });\n\n        // HNSW + cache updated after successful commit — no orphan risk on rollback.\n        for (let i = 0; i < ids.length; i++) {\n            this._hnsw.add(vecs[i], ids[i]);\n            this._vecs.set(ids[i], vecs[i]);\n        }\n\n        return ids;\n    }\n\n    /** Search this collection. */\n    async search(query: string, options: CollectionSearchOptions = {}): Promise<CollectionItem[]> {\n        const { k = 5, mode = 'hybrid', minScore = 0.15, tags } = options;\n\n        // Auto-prune expired items before search\n        this._pruneExpired();\n\n        if (mode === 'keyword') return this._filterByTags(this._searchBM25(query, k, minScore), tags);\n        if (mode === 'vector') return this._filterByTags(await this._searchVector(query, k, minScore), tags);\n\n        // Hybrid: vector + BM25 → generic RRF (no SearchResult conversion)\n        const [vectorHits, bm25Hits] = await Promise.all([\n            this._searchVector(query, k, 0),\n            Promise.resolve(this._searchBM25(query, k, 0)),\n        ]);\n\n        const fused = fuseRankedLists(\n            [vectorHits, bm25Hits],\n            h => String(h.id),\n            h => h.score ?? 0,\n        );\n\n        const results: CollectionItem[] = fused\n            .map(({ item, score }) => ({ ...item, score }))\n            .filter(r => r.score >= minScore)\n            .slice(0, k);\n\n        // Apply re-ranking if available\n        if (this._reranker && results.length > 1) {\n            const asSearchResults: SearchResult[] = results.map(r => ({\n                type: 'collection' as const,\n                score: r.score ?? 0,\n                content: r.content,\n                metadata: { id: r.id },\n            }));\n            const reranked = await rerank(query, asSearchResults, this._reranker);\n            const rerankedById = new Map(\n                reranked.map(r => [r.type === 'collection' ? r.metadata.id : undefined, r.score]),\n            );\n            const blended = results.map(r => ({ ...r, score: rerankedById.get(r.id) ?? r.score ?? 0 }));\n            return this._filterByTags(\n                blended.sort((a, b) => (b.score ?? 0) - (a.score ?? 0)),\n                tags,\n            );\n        }\n\n        return this._filterByTags(results, tags);\n    }\n\n    /** Search and return results as SearchResult[] for use in hybrid search pipelines. */\n    async searchAsResults(query: string, k: number): Promise<SearchResult[]> {\n        const hits = await this.search(query, { k });\n        return hits.map(h => ({\n            type: 'collection' as const,\n            score: h.score ?? 0,\n            content: h.content,\n            metadata: { ...h.metadata, id: h.id, collection: this._name },\n        }));\n    }\n\n    /** List items (newest first). */\n    list(options: { limit?: number; offset?: number; tags?: string[] } = {}): CollectionItem[] {\n        const { limit = 20, offset = 0, tags } = options;\n\n        // Auto-prune expired items\n        this._pruneExpired();\n\n        const rows = this._db.prepare(\n            'SELECT * FROM kv_data WHERE collection = ? AND (expires_at IS NULL OR expires_at > ?) ORDER BY created_at DESC, id DESC LIMIT ? OFFSET ?'\n        ).all(this._name, Math.floor(Date.now() / 1000), limit, offset) as KvDataRow[];\n        return this._filterByTags(rows.map(r => this._rowToItem(r)), tags);\n    }\n\n    /** Count items in this collection. */\n    count(): number {\n        return (this._db.prepare(\n            'SELECT COUNT(*) as c FROM kv_data WHERE collection = ? AND (expires_at IS NULL OR expires_at > ?)'\n        ).get(this._name, Math.floor(Date.now() / 1000)) as CountRow).c;\n    }\n\n    /** Keep only the N most recent items, remove the rest. */\n    async trim(options: { keep: number }): Promise<{ removed: number }> {\n        const before = this.count();\n        if (before <= options.keep) return { removed: 0 };\n\n        // Get IDs to remove (oldest first, beyond the keep window)\n        const toRemove = this._db.prepare(`\n            SELECT id FROM kv_data \n            WHERE collection = ? \n            ORDER BY created_at DESC, id DESC \n            LIMIT -1 OFFSET ?\n        `).all(this._name, options.keep) as Pick<KvDataRow, 'id'>[];\n\n        for (const row of toRemove) {\n            this._removeById(row.id);\n        }\n\n        return { removed: toRemove.length };\n    }\n\n    /** Remove items older than a duration string (e.g. '30d', '12h'). */\n    async prune(options: { olderThan: string }): Promise<{ removed: number }> {\n        const seconds = parseDuration(options.olderThan);\n        const cutoff = Math.floor(Date.now() / 1000) - seconds;\n\n        const toRemove = this._db.prepare(\n            'SELECT id FROM kv_data WHERE collection = ? AND created_at < ?'\n        ).all(this._name, cutoff) as Pick<KvDataRow, 'id'>[];\n\n        for (const row of toRemove) {\n            this._removeById(row.id);\n        }\n\n        return { removed: toRemove.length };\n    }\n\n    /** Remove a specific item by ID. */\n    remove(id: number): void {\n        this._removeById(id);\n    }\n\n    /** Clear all items in this collection. */\n    clear(): void {\n        const rows = this._db.prepare(\n            'SELECT id FROM kv_data WHERE collection = ?'\n        ).all(this._name) as Pick<KvDataRow, 'id'>[];\n\n        for (const row of rows) {\n            this._removeById(row.id);\n        }\n    }\n\n\n    private _removeById(id: number): void {\n        // DB first — can fail (disk full, lock). If it throws, HNSW+cache stay consistent.\n        this._db.prepare('DELETE FROM kv_data WHERE id = ?').run(id);\n        // HNSW + cache after — these always succeed\n        this._hnsw.remove(id);\n        this._vecs.delete(id);\n    }\n\n    private async _searchVector(query: string, k: number, minScore: number): Promise<CollectionItem[]> {\n        if (this._hnsw.size === 0) return [];\n\n        const queryVec = await this._embedding.embed(query);\n        // Adaptive over-fetch: proportional to total/collection density, clamped [3, 50]\n        const searchK = this._adaptiveSearchK(k);\n        const hits = this._hnsw.search(queryVec, searchK);\n\n        const ids = hits.map(h => h.id);\n        if (ids.length === 0) return [];\n\n        const scoreMap = new Map(hits.map(h => [h.id, h.score]));\n        const placeholders = ids.map(() => '?').join(',');\n\n        const rows = this._db.prepare(\n            `SELECT * FROM kv_data WHERE id IN (${placeholders}) AND collection = ?`\n        ).all(...ids, this._name) as KvDataRow[];\n\n        return rows\n            .map(r => ({ ...this._rowToItem(r), score: scoreMap.get(r.id) ?? 0 }))\n            .filter(r => r.score >= minScore)\n            .sort((a, b) => (b.score ?? 0) - (a.score ?? 0))\n            .slice(0, k);\n    }\n\n    /** Compute adaptive over-fetch multiplier based on collection density in shared HNSW. */\n    private _adaptiveSearchK(k: number): number {\n        const totalSize = this._hnsw.size;\n        if (totalSize === 0) return 0;\n        const collectionCount = this.count();\n        if (collectionCount === 0) return Math.min(k * 3, totalSize);\n        const ratio = Math.ceil(totalSize / collectionCount);\n        const multiplier = Math.max(3, Math.min(ratio, 50));\n        return Math.min(k * multiplier, totalSize);\n    }\n\n    private _searchBM25(query: string, k: number, minScore: number): CollectionItem[] {\n        const ftsQuery = sanitizeFTS(query);\n        if (!ftsQuery) return [];\n\n        try {\n            const rows = this._db.prepare(`\n                SELECT d.*, bm25(fts_kv, 5.0, 1.0) AS score\n                FROM fts_kv f\n                JOIN kv_data d ON d.id = f.rowid\n                WHERE fts_kv MATCH ? AND d.collection = ?\n                ORDER BY score ASC\n                LIMIT ?\n            `).all(ftsQuery, this._name, k) as (KvDataRow & { score: number })[];\n\n            return rows\n                .map(r => ({\n                    ...this._rowToItem(r),\n                    score: normalizeBM25(r.score),\n                }))\n                .filter(r => (r.score ?? 0) >= minScore);\n        } catch {\n            return [];\n        }\n    }\n\n    private _rowToItem(r: KvDataRow): CollectionItem {\n        return {\n            id: r.id,\n            collection: r.collection,\n            content: r.content,\n            metadata: JSON.parse(r.meta_json || '{}') as Record<string, unknown>,\n            tags: JSON.parse(r.tags_json || '[]') as string[],\n            createdAt: r.created_at,\n            expiresAt: r.expires_at ?? undefined,\n        };\n    }\n\n    /** Filter results by tags (item must have ALL specified tags). */\n    private _filterByTags(items: CollectionItem[], tags?: string[]): CollectionItem[] {\n        if (!tags || tags.length === 0) return items;\n        return items.filter(item =>\n            tags.every(t => item.tags.includes(t))\n        );\n    }\n\n    /** Remove expired items (TTL). Called automatically on search/list. */\n    private _pruneExpired(): void {\n        const now = Math.floor(Date.now() / 1000);\n        const expired = this._db.prepare(\n            'SELECT id FROM kv_data WHERE collection = ? AND expires_at IS NOT NULL AND expires_at <= ?'\n        ).all(this._name, now) as Pick<KvDataRow, 'id'>[];\n\n        for (const row of expired) {\n            this._removeById(row.id);\n        }\n    }\n}\n\n/** Parse a duration string like '30d', '12h', '5m' to seconds. */\nfunction parseDuration(s: string): number {\n    const match = s.match(/^(\\d+)([dhms])$/);\n    if (!match) throw new Error(`Invalid duration: \"${s}\". Use format like '30d', '12h', '5m'.`);\n\n    const n = parseInt(match[1], 10);\n    switch (match[2]) {\n        case 'd': return n * 86400;\n        case 'h': return n * 3600;\n        case 'm': return n * 60;\n        case 's': return n;\n        default: return n;\n    }\n}\n","/**\n * BrainBank — KV Service\n *\n * Owns the shared HNSW index and vector cache for KV collections.\n * Provides collection creation, listing, and deletion.\n * Extracted from BrainBank to separate infrastructure from facade.\n */\n\nimport type { DatabaseAdapter } from '@/db/adapter.ts';\nimport type { HNSWIndex } from '@/providers/vector/hnsw-index.ts';\nimport type { EmbeddingProvider, Reranker } from '@/types.ts';\nimport { Collection } from './collection.ts';\n\nexport class KVService {\n    private _collections = new Map<string, Collection>();\n\n    constructor(\n        private _db: DatabaseAdapter,\n        private _embedding: EmbeddingProvider,\n        private _hnsw: HNSWIndex,\n        private _vecs: Map<number, Float32Array>,\n        private _reranker?: Reranker,\n    ) {}\n\n    /** Get or create a named collection. */\n    collection(name: string): Collection {\n        if (this._collections.has(name)) return this._collections.get(name)!;\n        const coll = new Collection(name, this._db, this._embedding, this._hnsw, this._vecs, this._reranker);\n        this._collections.set(name, coll);\n        return coll;\n    }\n\n    /** List all collection names that have data. */\n    listNames(): string[] {\n        return (this._db.prepare('SELECT DISTINCT collection FROM kv_data ORDER BY collection').all() as { collection: string }[])\n            .map(r => r.collection);\n    }\n\n    /** Delete a collection's data and evict from cache. Removes vectors from HNSW to prevent ghost entries. */\n    delete(name: string): void {\n        const ids = this._db.prepare(\n            'SELECT id FROM kv_data WHERE collection = ?'\n        ).all(name) as { id: number }[];\n\n        for (const { id } of ids) {\n            this._hnsw.remove(id);\n            this._vecs.delete(id);\n        }\n\n        this._db.prepare('DELETE FROM kv_data WHERE collection = ?').run(name);\n        this._collections.delete(name);\n    }\n\n    /** Access the shared HNSW index (used by reembed). */\n    get hnsw(): HNSWIndex     { return this._hnsw; }\n\n    /** Access the shared vector cache. @internal */\n    get vecs(): Map<number, Float32Array> { return this._vecs; }\n\n    /** Clear all cached collections and vectors. */\n    clear(): void {\n        this._collections.clear();\n        this._vecs.clear();\n    }\n}\n","/**\n * BrainBank — Language Registry\n * \n * Supported file extensions, language mappings, and ignore lists.\n * Controls which files get indexed and how they're chunked.\n */\n\n\nexport const SUPPORTED_EXTENSIONS: Record<string, string> = {\n    // TypeScript / JavaScript\n    '.ts': 'typescript',\n    '.tsx': 'typescript',\n    '.js': 'javascript',\n    '.jsx': 'javascript',\n    '.mjs': 'javascript',\n    '.cjs': 'javascript',\n\n    // Systems\n    '.go': 'go',\n    '.rs': 'rust',\n    '.cpp': 'cpp',\n    '.cc': 'cpp',\n    '.c': 'c',\n    '.h': 'c',\n    '.hpp': 'cpp',\n\n    // JVM\n    '.java': 'java',\n    '.kt': 'kotlin',\n    '.scala': 'scala',\n\n    // Scripting\n    '.py': 'python',\n    '.rb': 'ruby',\n    '.php': 'php',\n    '.lua': 'lua',\n    '.sh': 'bash',\n    '.bash': 'bash',\n    '.zsh': 'bash',\n\n    // Web\n    '.html': 'html',\n    '.css': 'css',\n    '.scss': 'scss',\n    '.less': 'less',\n    '.svelte': 'svelte',\n    '.vue': 'vue',\n\n    // Data / Config (JSON + YAML excluded — config/CI files cause search noise)\n    '.toml': 'toml',\n    '.xml': 'xml',\n    '.graphql': 'graphql',\n    '.gql': 'graphql',\n\n    // Database\n    '.sql': 'sql',\n    '.prisma': 'prisma',\n\n    // Other\n    '.swift': 'swift',\n    '.dart': 'dart',\n    '.r': 'r',\n    '.ex': 'elixir',\n    '.exs': 'elixir',\n    '.erl': 'erlang',\n    '.zig': 'zig',\n};\n\n\nexport const IGNORE_DIRS = new Set([\n    // Package managers\n    'node_modules',\n    'bower_components',\n    '.pnpm',\n\n    // Build output\n    'dist',\n    'build',\n    'out',\n    '.next',\n    '.nuxt',\n    '.output',\n    '.svelte-kit',\n\n    // Auto-generated code\n    'generated',\n    'sdk',\n    'openapi',\n\n    // Version control\n    '.git',\n    '.hg',\n    '.svn',\n\n    // IDE / Editor\n    '.idea',\n    '.vscode',\n\n    // Runtime / Cache\n    '__pycache__',\n    '.pytest_cache',\n    'venv',\n    '.venv',\n    '.env',\n    '.tox',\n\n    // Coverage / Test artifacts\n    'coverage',\n    '.nyc_output',\n    'htmlcov',\n\n    // Compiled\n    'target',     // Rust, Java\n    '.cargo',\n    'vendor',     // Go, PHP\n\n    // Database (auto-generated migrations, dumps, seeds)\n    'migrations',\n    'db_dumps',\n    'seeds',\n\n    // AI / Model cache\n    '.model-cache',\n    '.brainbank',\n\n    // OS\n    '.DS_Store',\n]);\n\n\nexport const IGNORE_FILES = new Set([\n    'package-lock.json',\n    'yarn.lock',\n    'pnpm-lock.yaml',\n    'bun.lockb',\n    'Cargo.lock',\n    'Gemfile.lock',\n    'poetry.lock',\n    'composer.lock',\n    'go.sum',\n]);\n\n\nimport path from 'node:path';\n\n/** Check if a file extension is supported for indexing. */\nexport function isSupported(filePath: string): boolean {\n    const ext = path.extname(filePath).toLowerCase();\n    return ext in SUPPORTED_EXTENSIONS;\n}\n\n/** Get the language name for a file. Returns undefined if not supported. */\nexport function getLanguage(filePath: string): string | undefined {\n    const ext = path.extname(filePath).toLowerCase();\n    return SUPPORTED_EXTENSIONS[ext];\n}\n\n/** Check if a directory name should be ignored. */\nexport function isIgnoredDir(dirName: string): boolean {\n    return IGNORE_DIRS.has(dirName);\n}\n\n/** Check if a filename should be ignored. */\nexport function isIgnoredFile(fileName: string): boolean {\n    return IGNORE_FILES.has(fileName);\n}\n\n/** Check if a relative path matches any of the given glob patterns. */\nexport function matchesGlob(relPath: string, patterns: string[]): boolean {\n    for (const pattern of patterns) {\n        const regex = pattern\n            .replace(/[.+^${}()|[\\]\\\\]/g, '\\\\$&')  // escape regex specials (not * ?)\n            .replace(/\\*\\*/g, '\\x00')               // placeholder for **\n            .replace(/\\*/g, '[^/]*')                 // * = anything except /\n            .replace(/\\?/g, '.')                     // ? = any single char\n            .replace(/\\x00/g, '.*');                 // ** = anything including /\n        if (new RegExp(`^${regex}$`).test(relPath)) return true;\n    }\n    return false;\n}\n","/**\n * BrainBank — Watcher\n *\n * Thin coordinator for plugin-driven watching. Each plugin CAN drive its own\n * watching via WatchablePlugin.watch(). For IndexablePlugins that don't\n * implement WatchablePlugin, the Watcher provides a single shared fs.watch\n * tree with fan-out routing so each plugin only receives relevant events.\n *\n * Responsibilities:\n *   1. Call `plugin.watch(onEvent)` for each WatchablePlugin\n *   2. For IndexablePlugins without watch(), share one recursive fs.watch tree\n *   3. Route events to the correct plugin based on sub-repo scope\n *   4. Dedup macOS double-fire events (change+rename per save)\n *   5. Apply per-plugin debounce from `plugin.watchConfig()`\n *   6. On event: call `plugin.indexItems([id])` or `plugin.index()` for re-indexing\n *   7. Call `handle.stop()` on `close()`\n *\n *   const watcher = brain.watch({ debounceMs: 2000 });\n *   watcher.close(); // stop watching\n */\n\nimport type { Plugin } from '@/plugin.ts';\nimport type { WatchEvent, WatchHandle } from '@/types.ts';\n\nimport * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport { isIndexable, isWatchable } from '@/plugin.ts';\nimport { isSupported, isIgnoredDir, matchesGlob } from '@/lib/languages.ts';\n\n/** Doc file extensions that the docs plugin indexes. */\nconst DOC_EXTENSIONS = new Set(['.md', '.mdx', '.txt', '.rst']);\n\n\nexport interface WatchOptions {\n    /** Default debounce for plugins that don't specify watchConfig. Default: 2000 */\n    debounceMs?: number;\n    /** Glob patterns to ignore (from config.json code.ignore). */\n    ignore?: string[];\n    /** Called when a source triggers re-indexing. */\n    onIndex?: (sourceId: string, pluginName: string) => void;\n    /** Called on errors. */\n    onError?: (error: Error) => void;\n}\n\n\n/** Pending event batch for a single plugin. */\ninterface PluginBatch {\n    plugin: Plugin;\n    handle: WatchHandle;\n    events: WatchEvent[];\n    timer: ReturnType<typeof setTimeout> | null;\n    flushing: boolean;\n}\n\n\n/** Plugin-driven watcher that coordinates re-indexing across all WatchablePlugins. */\nexport class Watcher {\n    private _active = true;\n    private _batches = new Map<string, PluginBatch>();\n    private _reindexFn: () => Promise<void>;\n    private _options: WatchOptions;\n    private _keepalive: ReturnType<typeof setInterval> | null = null;\n\n    constructor(\n        reindexFn: () => Promise<void>,\n        plugins: Plugin[],\n        options: WatchOptions = {},\n        repoPath?: string,\n    ) {\n        this._reindexFn = reindexFn;\n        this._options = options;\n        this._startWatching(plugins, repoPath);\n    }\n\n    /** Whether the watcher is active. */\n    get active(): boolean { return this._active; }\n\n    /** Stop all plugin watchers. */\n    async close(): Promise<void> {\n        this._active = false;\n\n        if (this._keepalive) {\n            clearInterval(this._keepalive);\n            this._keepalive = null;\n        }\n\n        for (const batch of this._batches.values()) {\n            if (batch.timer) clearTimeout(batch.timer);\n            try {\n                await batch.handle.stop();\n            } catch (err) {\n                this._options.onError?.(err instanceof Error ? err : new Error(String(err)));\n            }\n        }\n        this._batches.clear();\n    }\n\n\n    /** Start watching for each WatchablePlugin, with shared fs.watch fallback. */\n    private _startWatching(plugins: Plugin[], repoPath?: string): void {\n        let hasAnyWatcher = false;\n        const fallbackPlugins: Plugin[] = [];\n\n        for (const plugin of plugins) {\n            if (isWatchable(plugin)) {\n                // Plugin-driven watching\n                try {\n                    const handle = plugin.watch((event) => this._onEvent(plugin, event));\n\n                    this._batches.set(plugin.name, {\n                        plugin,\n                        handle,\n                        events: [],\n                        timer: null,\n                        flushing: false,\n                    });\n                    hasAnyWatcher = true;\n                } catch (err) {\n                    this._options.onError?.(err instanceof Error ? err : new Error(String(err)));\n                }\n            } else if (isIndexable(plugin) && repoPath) {\n                // Collect for shared fs.watch fallback\n                fallbackPlugins.push(plugin);\n            }\n        }\n\n        // Create a SINGLE shared fs.watch tree for all fallback plugins\n        if (fallbackPlugins.length > 0 && repoPath) {\n            const sharedHandle = this._startSharedFsWatch(fallbackPlugins, repoPath);\n            if (sharedHandle) {\n                // Register batches for each fallback plugin with the shared handle\n                for (const plugin of fallbackPlugins) {\n                    this._batches.set(plugin.name, {\n                        plugin,\n                        handle: sharedHandle,\n                        events: [],\n                        timer: null,\n                        flushing: false,\n                    });\n                }\n                hasAnyWatcher = true;\n            }\n        }\n\n        // Keep the Node event loop alive even if no native watchers are active\n        if (hasAnyWatcher) {\n            this._keepalive = setInterval(() => {}, 60_000);\n            this._keepalive.unref?.(); // allow graceful exit on SIGINT\n        }\n    }\n\n\n    /**\n     * Single shared recursive fs.watch that fans out events to multiple plugins.\n     * Each event is routed based on: sub-repo prefix (code:backend → servicehub-backend/),\n     * file extension (docs → .md only), and code support (code → isSupported).\n     */\n    private _startSharedFsWatch(plugins: Plugin[], repoPath: string): WatchHandle | null {\n        const watchers: fs.FSWatcher[] = [];\n        const ignorePatterns = this._options.ignore ?? [];\n\n        // Dedup: macOS fs.watch fires both 'change' + 'rename' for a single save.\n        const recentEvents = new Map<string, number>();\n        const DEDUP_MS = 100;\n\n        // Pre-compute routing info per plugin\n        const routes = plugins.map(plugin => {\n            const baseName = plugin.name.split(':')[0];\n            const subRepo = plugin.name.includes(':')\n                ? plugin.name.split(':').slice(1).join(':')\n                : null;\n            return { plugin, baseName, subRepo };\n        });\n\n        const watchDir = (dir: string): void => {\n            try {\n                const watcher = fs.watch(dir, { persistent: true }, (_eventType, filename) => {\n                    if (!filename || !this._active) return;\n                    const fullPath = path.join(dir, filename);\n                    const relPath = path.relative(repoPath, fullPath);\n                    const ext = path.extname(fullPath).toLowerCase();\n\n                    // Config ignore: skip files matching user-defined glob patterns\n                    if (ignorePatterns.length > 0 && matchesGlob(relPath, ignorePatterns)) return;\n\n                    // Dedup: skip if we already saw this file within DEDUP_MS\n                    const now = Date.now();\n                    const lastSeen = recentEvents.get(relPath);\n                    if (lastSeen && now - lastSeen < DEDUP_MS) return;\n                    recentEvents.set(relPath, now);\n\n                    const event: WatchEvent = {\n                        type: 'update',\n                        sourceId: relPath,\n                        sourceName: 'file',\n                    };\n\n                    // Fan out to matching plugins\n                    for (const { plugin, baseName, subRepo } of routes) {\n                        // Sub-repo routing: skip files outside this plugin's scope\n                        if (subRepo && !relPath.startsWith(subRepo + '/')) continue;\n\n                        // Extension-based routing\n                        if (baseName === 'docs') {\n                            // Docs plugin only cares about doc files\n                            if (!DOC_EXTENSIONS.has(ext)) continue;\n                        } else {\n                            // Code/git plugins only care about supported source files\n                            if (!isSupported(fullPath)) continue;\n                        }\n\n                        this._onEvent(plugin, event);\n                    }\n                });\n\n                watcher.on('error', (err) => {\n                    this._options.onError?.(err instanceof Error ? err : new Error(String(err)));\n                });\n\n                watchers.push(watcher);\n            } catch {\n                // Directory might not exist or be inaccessible — skip\n            }\n\n            // Recurse into subdirectories\n            try {\n                for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n                    if (!entry.isDirectory()) continue;\n                    if (isIgnoredDir(entry.name)) continue;\n                    if (entry.name.startsWith('.')) continue;\n                    // Skip directories matching config ignore patterns\n                    const dirRel = path.relative(repoPath, path.join(dir, entry.name));\n                    if (ignorePatterns.length > 0 && matchesGlob(dirRel + '/', ignorePatterns)) continue;\n                    watchDir(path.join(dir, entry.name));\n                }\n            } catch {\n                // Directory read failed — skip\n            }\n        };\n\n        watchDir(repoPath);\n\n        if (watchers.length === 0) return null;\n\n        // Periodically clean up stale dedup entries to prevent memory leak\n        const cleanupInterval = setInterval(() => {\n            const cutoff = Date.now() - 10_000;\n            for (const [key, ts] of recentEvents) {\n                if (ts < cutoff) recentEvents.delete(key);\n            }\n        }, 30_000);\n        cleanupInterval.unref?.();\n\n        let stopped = false;\n        return {\n            get active() { return !stopped; },\n            async stop() {\n                if (stopped) return;\n                stopped = true;\n                clearInterval(cleanupInterval);\n                for (const w of watchers) {\n                    try { w.close(); } catch { /* safe to ignore */ }\n                }\n                watchers.length = 0;\n            },\n        };\n    }\n\n\n    /** Handle an incoming event from a plugin. */\n    private _onEvent(plugin: Plugin, event: WatchEvent): void {\n        if (!this._active) return;\n\n        const batch = this._batches.get(plugin.name);\n        if (!batch) return;\n\n        batch.events.push(event);\n\n        // Resolve debounce: plugin config > global options > 2000ms default\n        const pluginDebounce = isWatchable(plugin)\n            ? plugin.watchConfig?.()?.debounceMs\n            : undefined;\n        const debounceMs = pluginDebounce ?? this._options.debounceMs ?? 2000;\n\n        // Check batch size limit\n        const batchSize = isWatchable(plugin)\n            ? plugin.watchConfig?.()?.batchSize\n            : undefined;\n\n        const shouldFlushNow = debounceMs === 0\n            || (batchSize !== undefined && batch.events.length >= batchSize);\n\n        if (shouldFlushNow) {\n            if (batch.timer) clearTimeout(batch.timer);\n            batch.timer = null;\n            void this._flush(batch);\n            return;\n        }\n\n        // Debounce: reset timer on each new event\n        if (batch.timer) clearTimeout(batch.timer);\n        batch.timer = setTimeout(() => void this._flush(batch), debounceMs);\n    }\n\n    /** Flush pending events for a plugin — trigger re-indexing. */\n    private async _flush(batch: PluginBatch): Promise<void> {\n        if (batch.flushing || batch.events.length === 0) return;\n        batch.flushing = true;\n\n        const { onIndex, onError } = this._options;\n\n        try {\n            const events = [...batch.events];\n            batch.events.length = 0;\n\n            const ids = events.map(e => e.sourceId);\n\n            // Try granular re-index first, fall back to full re-index\n            if (isIndexable(batch.plugin) && batch.plugin.indexItems) {\n                await batch.plugin.indexItems(ids);\n                for (const id of ids) {\n                    onIndex?.(id, batch.plugin.name);\n                }\n            } else if (isIndexable(batch.plugin)) {\n                await batch.plugin.index();\n                for (const id of ids) {\n                    onIndex?.(id, batch.plugin.name);\n                }\n            } else {\n                // Plugin is watchable but not indexable — use global re-index\n                await this._reindexFn();\n                for (const id of ids) {\n                    onIndex?.(id, batch.plugin.name);\n                }\n            }\n        } catch (err) {\n            onError?.(err instanceof Error ? err : new Error(String(err)));\n        } finally {\n            batch.flushing = false;\n\n            // If new events arrived during flush, schedule another flush\n            if (batch.events.length > 0 && this._active) {\n                const debounceMs = this._options.debounceMs ?? 2000;\n                batch.timer = setTimeout(() => void this._flush(batch), debounceMs);\n            }\n        }\n    }\n}\n","/**\n * BrainBank — Webhook Server\n *\n * Optional shared HTTP server for push-based watch plugins (e.g. Jira, GitHub).\n * Opt-in: only created when `new BrainBank({ webhookPort: 4242 })` is configured.\n *\n * Plugins register routes during `watch()`:\n *   ctx.webhookServer?.register('jira', '/jira/webhook', handler);\n *\n * Each plugin gets its own path namespace. Unregistering cleans up the route.\n */\n\nimport * as http from 'node:http';\n\n\n/** Handler for incoming webhook payloads. */\nexport type WebhookHandler = (body: unknown) => void;\n\ninterface Route {\n    pluginName: string;\n    path: string;\n    handler: WebhookHandler;\n}\n\n\n/** Shared HTTP server for push-based watch plugins. */\nexport class WebhookServer {\n    private _server: http.Server | null = null;\n    private _routes: Route[] = [];\n    private _listening = false;\n\n    /** Start listening on the specified port. */\n    listen(port: number): void {\n        if (this._listening) return;\n\n        this._server = http.createServer((req, res) => {\n            this._handleRequest(req, res);\n        });\n\n        this._server.listen(port);\n        this._listening = true;\n    }\n\n    /** Register a webhook route for a plugin. */\n    register(pluginName: string, path: string, handler: WebhookHandler): void {\n        // Normalize path to start with /\n        const normalizedPath = path.startsWith('/') ? path : `/${path}`;\n        this._routes.push({ pluginName, path: normalizedPath, handler });\n    }\n\n    /** Remove all routes for a plugin. */\n    unregister(pluginName: string): void {\n        this._routes = this._routes.filter(r => r.pluginName !== pluginName);\n    }\n\n    /** Stop the server and clear all routes. */\n    close(): void {\n        this._server?.close();\n        this._server = null;\n        this._routes = [];\n        this._listening = false;\n    }\n\n    /** Whether the server is currently listening. */\n    get active(): boolean {\n        return this._listening;\n    }\n\n    /** Route incoming POST requests to the matching handler. */\n    private _handleRequest(req: http.IncomingMessage, res: http.ServerResponse): void {\n        if (req.method !== 'POST') {\n            res.writeHead(405, { 'Content-Type': 'application/json' });\n            res.end(JSON.stringify({ error: 'Method not allowed' }));\n            return;\n        }\n\n        const route = this._routes.find(r => req.url === r.path);\n        if (!route) {\n            res.writeHead(404, { 'Content-Type': 'application/json' });\n            res.end(JSON.stringify({ error: 'Not found' }));\n            return;\n        }\n\n        const chunks: Buffer[] = [];\n        req.on('data', (chunk: Buffer) => chunks.push(chunk));\n        req.on('end', () => {\n            try {\n                const raw = Buffer.concat(chunks).toString('utf8');\n                const body = raw ? JSON.parse(raw) as unknown : {};\n                route.handler(body);\n                res.writeHead(200, { 'Content-Type': 'application/json' });\n                res.end(JSON.stringify({ ok: true }));\n            } catch {\n                // Malformed JSON — still acknowledge receipt\n                res.writeHead(400, { 'Content-Type': 'application/json' });\n                res.end(JSON.stringify({ error: 'Invalid JSON' }));\n            }\n        });\n    }\n}\n","/**\n * BrainBank — Main Orchestrator\n *\n * Thin facade that composes services:\n *   - **PluginRegistry** — registration + lookup\n *   - **SearchAPI** — all search + context logic\n *   - **runIndex** — code / git / docs indexing orchestration\n *\n * Initialization is inline — no indirection layers.\n * All heavy logic lives in those modules; BrainBank owns state,\n * guards (`_requireInit` / `initialize`), and public API shape.\n *\n * Multi-process coordination:\n *   - `ensureFresh()` detects stale HNSW indices via `index_state` table\n *   - Hot-reloads from disk when another process updated the index\n *   - Called implicitly before every search operation\n */\n\nimport type { ReembedResult, ReembedOptions } from './engine/reembed.ts';\nimport type { IndexDeps } from './engine/index-api.ts';\nimport type { Plugin, PluginContext } from './plugin.ts';\nimport type { SearchOptions } from './search/types.ts';\nimport type { WatchOptions } from './services/watch.ts';\nimport type {\n    BrainBankConfig, ResolvedConfig, EmbeddingProvider,\n    SearchResult, ICollection,\n    ContextOptions, StageProgressCallback,\n} from './types.ts';\n\nimport { EventEmitter } from 'node:events';\n\nimport * as path from 'node:path';\nimport { resolveConfig } from './config.ts';\nimport { HNSW } from './constants.ts';\nimport type { DatabaseAdapter } from './db/adapter.ts';\nimport { SQLiteAdapter } from './db/sqlite-adapter.ts';\nimport { createTracker } from './db/tracker.ts';\nimport { setEmbeddingMeta, getEmbeddingMeta, detectProviderMismatch, getVersions } from './db/metadata.ts';\nimport { runIndex } from './engine/index-api.ts';\nimport { reembedAll } from './engine/reembed.ts';\nimport { SearchAPI, createSearchAPI } from './engine/search-api.ts';\nimport { isReembeddable, isFileResolvable } from './plugin.ts';\n\nimport { resolveEmbedding } from './providers/embeddings/resolve.ts';\nimport { HNSWIndex } from './providers/vector/hnsw-index.ts';\nimport { hnswPath, countRows, saveAllHnsw, loadVectors, loadVecCache, reloadHnsw } from './providers/vector/hnsw-loader.ts';\nimport { KVService } from './services/kv-service.ts';\nimport { PluginRegistry } from './services/plugin-registry.ts';\nimport { Watcher } from './services/watch.ts';\nimport { WebhookServer } from './services/webhook-server.ts';\n\n\nexport class BrainBank extends EventEmitter {\n    private _config: ResolvedConfig;\n    private _db!: DatabaseAdapter;\n    private _embedding!: EmbeddingProvider;\n    private _registry = new PluginRegistry();\n    private _searchAPI?: SearchAPI;\n    private _indexDeps?: IndexDeps;\n    private _kvService?: KVService;\n    private _initialized = false;\n    private _initPromise: Promise<void> | null = null;\n    private _watcher?: Watcher;\n    private _webhookServer?: WebhookServer;\n    private _sharedHnsw = new Map<string, { hnsw: HNSWIndex; vecCache: Map<number, Float32Array> }>();\n    private _repoDBs = new Map<string, DatabaseAdapter>();\n    private _loadedVersions = new Map<string, number>();\n\n    constructor(config: BrainBankConfig = {}) {\n        super();\n        this._config = resolveConfig(config);\n    }\n\n    /** Whether the brainbank has been initialized. */\n    get isInitialized(): boolean {\n        return this._initialized;\n    }\n\n    /** The resolved configuration. */\n    get config(): Readonly<ResolvedConfig> {\n        return this._config;\n    }\n\n    /** All registered plugin names (insertion order). */\n    get plugins(): string[] {\n        return this._registry.names;\n    }\n\n    /**\n     * Register a plugin. Chainable.\n     *\n     * @example\n     * brain.use(code({ repoPath: '.' })).use(docs());\n     *\n     * @throws If called after `initialize()`.\n     */\n    use(plugin: Plugin): this {\n        if (this._initialized) {\n            throw new Error(\n                `BrainBank: Cannot add plugin '${plugin.name}' after initialization. ` +\n                `Call .use() before any operations.`,\n            );\n        }\n        this._registry.register(plugin);\n        return this;\n    }\n\n    /**\n     * Check if a plugin is loaded.\n     * Also matches type prefix (e.g. `'code'` matches `'code:frontend'`).\n     */\n    has(name: string): boolean {\n        return this._registry.has(name);\n    }\n\n    /** Get a plugin instance by name. Returns `undefined` if not loaded. */\n    plugin<T extends Plugin = Plugin>(name: string): T | undefined {\n        return this._registry.has(name) ? this._registry.get<T>(name) : undefined;\n    }\n\n    /**\n     * Initialize database, HNSW indices, and load existing vectors.\n     * Automatically called by `index` / `search` methods if not yet initialized.\n     * Concurrent calls are deduped via `_initPromise`.\n     *\n     * @param options.force - If `true`, skip vector load on dimension mismatch.\n     */\n    async initialize(options: { force?: boolean } = {}): Promise<void> {\n        if (this._initialized) return;\n        if (this._initPromise) return this._initPromise;\n\n        this._initPromise = this._runInitialize(options)\n            .then(() => { this._initPromise = null; })\n            .catch(err => {\n                this._cleanupAfterFailedInit();\n                throw err;\n            });\n\n        return this._initPromise;\n    }\n\n    /**\n     * Estimated memory footprint of loaded HNSW indices (bytes).\n     * Counts only vector data: `vectorCount × dims × 4`.\n     * Returns 0 if not initialized.\n     */\n    memoryHint(): number {\n        if (!this._initialized) return 0;\n        const dims = this._config.embeddingDims;\n        const bytesPerVector = dims * 4;\n\n        let total = 0;\n        if (this._kvService) total += this._kvService.hnsw.size * bytesPerVector;\n        for (const { hnsw } of this._sharedHnsw.values()) {\n            total += hnsw.size * bytesPerVector;\n        }\n        return total;\n    }\n\n    /** Close database and release all resources. Synchronous. */\n    close(): void {\n        void this._watcher?.close();\n        this._webhookServer?.close();\n        for (const plugin of this._registry.all) plugin.close?.();\n\n        const reranker = this._config.reranker as { close?: () => void } | undefined;\n        reranker?.close?.();\n\n        const pruner = this._config.pruner as { close?: () => void } | undefined;\n        pruner?.close?.();\n\n        this._embedding?.close().catch(() => { });\n        for (const db of this._repoDBs.values()) db.close();\n        this._repoDBs.clear();\n        this._db?.close();\n        this._initialized = false;\n        this._kvService?.clear();\n        this._sharedHnsw.clear();\n        this._loadedVersions.clear();\n        this._kvService = undefined;\n        this._searchAPI = undefined;\n        this._indexDeps = undefined;\n        this._webhookServer = undefined;\n        this._registry.clear();\n    }\n\n    /**\n     * Get or create a dynamic collection (universal KV primitive).\n     *\n     * @example\n     * const errors = brain.collection('debug_errors');\n     * await errors.add('Fixed null check', { file: 'api.ts' });\n     * const hits = await errors.search('null pointer');\n     *\n     * @throws If not initialized.\n     */\n    collection(name: string): ICollection {\n        if (!this._kvService) {\n            throw new Error('BrainBank: Collections not ready. Call await brain.initialize() first.');\n        }\n        return this._kvService.collection(name);\n    }\n\n    /** List all collection names that have data. */\n    listCollectionNames(): string[] {\n        this._requireInit('listCollectionNames');\n        return this._kvService!.listNames();\n    }\n\n    /** Delete a collection's data and evict from cache. */\n    deleteCollection(name: string): void {\n        this._requireInit('deleteCollection');\n        this._kvService!.delete(name);\n    }\n\n    /** Run indexing across selected modules. Auto-initializes. */\n    async index(options: {\n        modules?: string[];\n        forceReindex?: boolean;\n        onProgress?: StageProgressCallback;\n        pluginOptions?: Record<string, unknown>;\n    } = {}): Promise<Record<string, unknown>> {\n        await this.initialize();\n        return runIndex(this._indexDeps!, options);\n    }\n\n    /**\n     * Detect stale HNSW indices and hot-reload from disk.\n     * Called implicitly before every search operation.\n     * Cost: one SQLite SELECT (~5μs on WAL mode).\n     */\n    async ensureFresh(): Promise<void> {\n        if (!this._initialized) return;\n\n        const dbVersions = getVersions(this._db);\n        for (const [name, dbVersion] of dbVersions) {\n            const loaded = this._loadedVersions.get(name) ?? 0;\n            if (dbVersion <= loaded) continue;\n\n            this.emit('progress', `Hot-reload: ${name} version ${loaded} → ${dbVersion}`);\n            this._reloadIndex(name);\n            this._loadedVersions.set(name, dbVersion);\n        }\n    }\n\n    /**\n     * Semantic search across all loaded modules.\n     * Scope via `sources: { code: 10, git: 0 }`.\n     */\n    async search(query: string, options?: SearchOptions): Promise<SearchResult[]> {\n        await this.initialize();\n        await this.ensureFresh();\n        return this._searchAPI?.search(query, options) ?? [];\n    }\n\n    /**\n     * Hybrid search: vector + BM25 fused with Reciprocal Rank Fusion.\n     * Scope via `sources: { code: 10, git: 5, docs: 3, myNotes: 5 }`.\n     */\n    async hybridSearch(query: string, options?: SearchOptions): Promise<SearchResult[]> {\n        await this.initialize();\n        await this.ensureFresh();\n        return this._searchAPI?.hybridSearch(query, options) ?? [];\n    }\n\n    /** BM25 keyword search only (no embeddings needed). */\n    async searchBM25(query: string, options?: SearchOptions): Promise<SearchResult[]> {\n        await this.initialize();\n        await this.ensureFresh();\n        return this._searchAPI?.searchBM25(query, options) ?? [];\n    }\n\n    /** Build formatted context block for LLM system prompt injection. Auto-initializes. */\n    async getContext(task: string, options: ContextOptions = {}): Promise<string> {\n        await this.initialize();\n        await this.ensureFresh();\n        return this._searchAPI?.getContext(task, options) ?? '';\n    }\n\n    /**\n     * Resolve file paths, directories, and glob patterns to full SearchResults.\n     * Bypasses search entirely — reads directly from plugin indexes.\n     *\n     * @example\n     * const files = brain.resolveFiles(['src/auth/login.ts', 'src/graph/']);\n     */\n    resolveFiles(patterns: string[]): SearchResult[] {\n        this._requireInit('resolveFiles');\n        const results: SearchResult[] = [];\n        for (const mod of this._registry.all) {\n            if (!isFileResolvable(mod)) continue;\n            results.push(...mod.resolveFiles(patterns));\n        }\n        return results;\n    }\n\n    /** Rebuild FTS5 indices. */\n    rebuildFTS(): void {\n        this._requireInit('rebuildFTS');\n        this._searchAPI?.rebuildFTS();\n    }\n\n    /** Get statistics for all loaded plugins. */\n    stats(): Record<string, Record<string, number | string> | undefined> {\n        this._requireInit('stats');\n        const result: Record<string, Record<string, number | string> | undefined> = {};\n\n        for (const mod of this._registry.all) {\n            if (mod.stats) {\n                const baseType = mod.name.split(':')[0];\n                result[baseType] = mod.stats();\n            }\n        }\n\n        return result;\n    }\n\n\n    /** Start watching for changes and auto-re-index. */\n    watch(options: WatchOptions = {}): Watcher {\n        this._requireInit('watch');\n        void this._watcher?.close();\n        this._watcher = new Watcher(\n            async () => { await this.index(); },\n            this._registry.all,\n            options,\n            this._config.repoPath,\n        );\n        return this._watcher;\n    }\n\n    /**\n     * Re-embed all existing text with the current embedding provider.\n     * Use after switching providers (e.g. Local → OpenAI).\n     */\n    async reembed(options: ReembedOptions = {}): Promise<ReembedResult> {\n        await this.initialize();\n\n        const hnswMap = new Map<string, { hnsw: HNSWIndex; vecs: Map<number, Float32Array> }>();\n\n        if (this._kvService) {\n            hnswMap.set(HNSW.KV, { hnsw: this._kvService.hnsw, vecs: this._kvService.vecs });\n        }\n        for (const [type, shared] of this._sharedHnsw) {\n            hnswMap.set(type, { hnsw: shared.hnsw, vecs: shared.vecCache });\n        }\n\n\n        const result = await reembedAll(this._db, this._embedding, hnswMap, this._registry.all, options, {\n            dbPath: this._config.dbPath,\n            kvHnsw: this._kvService!.hnsw,\n            sharedHnsw: this._sharedHnsw,\n        });\n\n        this.emit('reembedded', result);\n        return result;\n    }\n\n    /**\n     * Linear 8-step initialization:\n     * 1. Open database\n     * 2. Resolve embedding provider\n     * 3. Check dimension mismatch\n     * 4. Create KV HNSW + KVService\n     * 5. Load KV vectors\n     * 6. Initialize plugins\n     * 7. Persist HNSW indices\n     * 8. Build SearchAPI + index deps\n     */\n    private async _runInitialize(options: { force?: boolean } = {}): Promise<void> {\n        if (this._initialized) return;\n\n        this._db = new SQLiteAdapter(this._config.dbPath);\n        this._embedding = await this._resolveEmbedding();\n\n        const mismatch = detectProviderMismatch(this._db, this._embedding);\n        if (mismatch?.mismatch && !options.force) {\n            this._db.close();\n            throw new Error(\n                `BrainBank: Embedding dimension mismatch (stored: ${mismatch.stored}, current: ${mismatch.current}). ` +\n                `Run brain.reembed() to re-index with the new provider, or switch back to the original provider.`,\n            );\n        }\n        setEmbeddingMeta(this._db, this._embedding);\n\n        const skipVectorLoad = !!(options.force && mismatch?.mismatch);\n        const dims = this._embedding.dims ?? this._config.embeddingDims;\n\n        const kvHnsw = new HNSWIndex(\n            dims,\n            this._config.maxElements ?? 500_000,\n            this._config.hnswM,\n            this._config.hnswEfConstruction,\n            this._config.hnswEfSearch,\n        );\n        await kvHnsw.init();\n\n        this._kvService = new KVService(this._db, this._embedding, kvHnsw, new Map(), this._config.reranker);\n\n        if (!skipVectorLoad) {\n            const kvIndexPath = hnswPath(this._config.dbPath, 'kv');\n            const kvCount = countRows(this._db, 'kv_vectors');\n            if (kvHnsw.tryLoad(kvIndexPath, kvCount)) {\n                loadVecCache(this._db, 'kv_vectors', 'data_id', this._kvService.vecs);\n            } else {\n                loadVectors(this._db, 'kv_vectors', 'data_id', kvHnsw, this._kvService.vecs);\n            }\n        }\n\n        const privateHnsw = new Map<string, HNSWIndex>();\n        for (const mod of this._registry.all) {\n            const pluginDb = this._getOrCreatePluginDb(mod.name);\n            // Propagate embedding meta to per-repo DBs\n            if (pluginDb !== this._db) {\n                setEmbeddingMeta(pluginDb, this._embedding);\n            }\n            const ctx = this._buildPluginContext(skipVectorLoad, privateHnsw, pluginDb, mod.name);\n            await mod.initialize(ctx);\n        }\n\n        // Start webhook server if configured (after plugins so they can register routes)\n        if (this._config.webhookPort) {\n            this._webhookServer = new WebhookServer();\n            this._webhookServer.listen(this._config.webhookPort);\n        }\n\n        await saveAllHnsw(this._config.dbPath, kvHnsw, this._sharedHnsw, privateHnsw);\n\n        this._searchAPI = createSearchAPI(\n            this._db, this._embedding, this._config,\n            this._registry, this._kvService, this._sharedHnsw,\n        );\n        this._indexDeps = {\n            db: this._db,\n            dbPath: this._config.dbPath,\n            sharedHnsw: this._sharedHnsw,\n            kvHnsw,\n            registry: this._registry,\n            emit: (e, d) => this.emit(e, d),\n        };\n\n        // Snapshot current versions for staleness detection\n        this._loadedVersions = getVersions(this._db);\n\n        this._initialized = true;\n        this.emit('initialized', { plugins: this.plugins });\n    }\n\n    /** Reset shared state after a failed `_runInitialize`. */\n    private _cleanupAfterFailedInit(): void {\n        for (const { hnsw } of this._sharedHnsw.values()) {\n            try { hnsw.reinit(); } catch (e) {\n                this.emit('warn', `HNSW reinit failed during cleanup: ${e}`);\n            }\n        }\n        this._kvService?.clear();\n        if (this._kvService) {\n            try { this._kvService.hnsw.reinit(); } catch (e) {\n                this.emit('warn', `KV HNSW reinit failed during cleanup: ${e}`);\n            }\n        }\n        try { this._db?.close(); } catch { /* DB already closed — safe to ignore */ }\n\n        this._db = undefined!;\n        this._kvService = undefined;\n        this._searchAPI = undefined;\n        this._indexDeps = undefined;\n        this._initPromise = null;\n    }\n\n    /** Resolve embedding: explicit config > stored DB key > local default. */\n    private async _resolveEmbedding(): Promise<EmbeddingProvider> {\n        if (this._config.embeddingProvider) return this._config.embeddingProvider;\n\n        const meta = getEmbeddingMeta(this._db);\n        if (meta?.providerKey && meta.providerKey !== 'local') {\n            this.emit('progress', `Embedding: auto-resolved '${meta.providerKey}' from DB`);\n            return resolveEmbedding(meta.providerKey);\n        }\n        return resolveEmbedding('local');\n    }\n\n    /**\n     * Get or create a per-repo SQLiteAdapter for namespaced plugins.\n     * Non-namespaced plugins use the root DB.\n     * DB path: `.brainbank/<repoName>.db` (e.g., `servicehub-backend.db`).\n     */\n    private _getOrCreatePluginDb(pluginName: string): DatabaseAdapter {\n        if (!pluginName.includes(':')) return this._db;\n\n        const repoName = pluginName.split(':').slice(1).join(':');\n        const existing = this._repoDBs.get(repoName);\n        if (existing) return existing;\n\n        const dir = path.dirname(this._config.dbPath);\n        const repoDbPath = path.join(dir, `${repoName}.db`);\n        const db = new SQLiteAdapter(repoDbPath);\n        this._repoDBs.set(repoName, db);\n        return db;\n    }\n\n    /** Build a per-plugin `PluginContext` with appropriate DB and HNSW scoping. */\n    private _buildPluginContext(\n        skipVectorLoad: boolean,\n        privateHnsw: Map<string, HNSWIndex>,\n        pluginDb: DatabaseAdapter,\n        pluginName: string,\n    ): PluginContext {\n        let autoId = 0;\n        const dbPath = this._config.dbPath;\n\n        return {\n            db: pluginDb,\n            embedding: this._embedding,\n            config: this._config,\n\n            createHnsw: async (maxElements?: number, dims?: number, name?: string) => {\n                const hnsw = await new HNSWIndex(\n                    dims ?? this._config.embeddingDims,\n                    maxElements ?? this._config.maxElements,\n                    this._config.hnswM,\n                    this._config.hnswEfConstruction,\n                    this._config.hnswEfSearch,\n                ).init();\n                privateHnsw.set(name ?? `private-${autoId++}`, hnsw);\n                return hnsw;\n            },\n\n            loadVectors: (table, idCol, hnsw, cache) => {\n                if (skipVectorLoad) return;\n                const indexName = table.replace('_vectors', '').replace('_chunks', '');\n                const indexPath = hnswPath(dbPath, `${indexName}-${pluginDb === this._db ? 'root' : 'repo'}`);\n                const rowCount = countRows(pluginDb, table);\n                if (hnsw.tryLoad(indexPath, rowCount)) {\n                    loadVecCache(pluginDb, table, idCol, cache);\n                } else {\n                    loadVectors(pluginDb, table, idCol, hnsw, cache);\n                }\n            },\n\n            getOrCreateSharedHnsw: async (type, maxElements, dims) => {\n                const existing = this._sharedHnsw.get(type);\n                if (existing) return { ...existing, isNew: false };\n\n                const hnsw = await new HNSWIndex(\n                    dims ?? this._config.embeddingDims,\n                    maxElements ?? this._config.maxElements,\n                    this._config.hnswM,\n                    this._config.hnswEfConstruction,\n                    this._config.hnswEfSearch,\n                ).init();\n\n                const vecCache = new Map<number, Float32Array>();\n                this._sharedHnsw.set(type, { hnsw, vecCache });\n                return { hnsw, vecCache, isNew: true };\n            },\n\n            collection: (name) => this._kvService!.collection(name),\n\n            createTracker: () => createTracker(pluginDb, pluginName),\n\n            webhookServer: this._webhookServer,\n        };\n    }\n\n    /**\n     * Reload a single HNSW index by name.\n     * Discovers the vector table via ReembeddablePlugin capability.\n     * KV is handled directly since it's core-owned.\n     *\n     * The `name` comes from `index_state` and equals the plugin's `mod.name`\n     * (e.g. `code:backend`, `git`, `docs`). This matches the key used in\n     * `getOrCreateSharedHnsw()` during initialization.\n     */\n    private _reloadIndex(name: string): void {\n        // KV HNSW — core-owned, known table\n        if (name === HNSW.KV && this._kvService) {\n            reloadHnsw({\n                dbPath: this._config.dbPath,\n                db: this._db,\n                name,\n                hnsw: this._kvService.hnsw,\n                vecCache: this._kvService.vecs,\n                vectorTable: 'kv_vectors',\n                idCol: 'data_id',\n            });\n            return;\n        }\n\n        // Shared HNSW — exact key match against the map\n        const shared = this._sharedHnsw.get(name);\n        if (!shared) return;\n\n        // Discover vector table from the plugin that owns this HNSW key.\n        // Match by plugin name (e.g. 'code:backend') or reembed name (e.g. 'code').\n        for (const mod of this._registry.all) {\n            if (!isReembeddable(mod)) continue;\n            if (mod.name !== name) continue;\n\n            const cfg = mod.reembedConfig();\n            reloadHnsw({\n                dbPath: this._config.dbPath,\n                db: this._db,\n                name,\n                hnsw: shared.hnsw,\n                vecCache: shared.vecCache,\n                vectorTable: cfg.vectorTable,\n                idCol: cfg.fkColumn,\n            });\n            return;\n        }\n    }\n\n    /** Guard: throw descriptive error if not initialized. */\n    private _requireInit(method: string): void {\n        if (!this._initialized) {\n            throw new Error(`BrainBank: Not initialized. Call await brain.initialize() before ${method}().`);\n        }\n    }\n}\n","/**\n * BrainBank — HNSW Loader\n *\n * Utilities for persisting and loading HNSW indexes to/from disk.\n * Used by BrainBank._runInitialize() and PluginContext.loadVectors().\n *\n * Includes cross-process write locking and hot-reload support\n * for multi-process coordination.\n */\n\nimport type { DatabaseAdapter, CountRow } from '@/db/adapter.ts';\nimport type { HNSWIndex } from './hnsw-index.ts';\n\nimport { dirname, join } from 'node:path';\nimport { withLock } from '@/lib/write-lock.ts';\n\n/** Derive the HNSW index file path from the DB path. */\nexport function hnswPath(dbPath: string, name: string): string {\n    return join(dirname(dbPath), `hnsw-${name}.index`);\n}\n\n/** Derive the lock directory from the DB path. */\nexport function lockDir(dbPath: string): string {\n    return dirname(dbPath);\n}\n\n/** Count rows in a vector table (fast, no data transfer). */\nexport function countRows(db: DatabaseAdapter, table: string): number {\n    const row = db.prepare(`SELECT COUNT(*) as c FROM ${table}`).get() as CountRow;\n    return row?.c ?? 0;\n}\n\n/**\n * Save all HNSW indexes to disk with cross-process file locking.\n * Prevents concurrent writes from corrupting `.index` files.\n */\nexport async function saveAllHnsw(\n    dbPath: string,\n    kvHnsw: HNSWIndex,\n    sharedHnsw: Map<string, { hnsw: HNSWIndex; vecCache: Map<number, Float32Array> }>,\n    privateHnsw: Map<string, HNSWIndex>,\n): Promise<boolean> {\n    try {\n        await withLock(lockDir(dbPath), 'hnsw', () => {\n            kvHnsw.save(hnswPath(dbPath, 'kv'));\n            for (const [name, { hnsw }] of sharedHnsw) {\n                hnsw.save(hnswPath(dbPath, name));\n            }\n            for (const [name, hnsw] of privateHnsw) {\n                hnsw.save(hnswPath(dbPath, name));\n            }\n        });\n        return true;\n    } catch {\n        // Non-fatal: next startup rebuilds from SQLite (slower).\n        return false;\n    }\n}\n\n/** Load vectors from SQLite into HNSW + cache. */\nexport function loadVectors(\n    db: DatabaseAdapter,\n    table: string,\n    idCol: string,\n    hnsw: HNSWIndex,\n    cache: Map<number, Float32Array>,\n): void {\n    const iter = db.prepare(`SELECT ${idCol}, embedding FROM ${table}`).iterate() as IterableIterator<{ embedding: Uint8Array; [key: string]: unknown }>;\n    for (const row of iter) {\n        const vec = new Float32Array(\n            row.embedding.buffer.slice(\n                row.embedding.byteOffset,\n                row.embedding.byteOffset + row.embedding.byteLength,\n            ),\n        );\n        hnsw.add(vec, row[idCol] as number);\n        cache.set(row[idCol] as number, vec);\n    }\n}\n\n/** Populate only the vecCache from SQLite (HNSW already loaded from file). */\nexport function loadVecCache(\n    db: DatabaseAdapter,\n    table: string,\n    idCol: string,\n    cache: Map<number, Float32Array>,\n): void {\n    const iter = db.prepare(`SELECT ${idCol}, embedding FROM ${table}`).iterate() as IterableIterator<{ embedding: Uint8Array; [key: string]: unknown }>;\n    for (const row of iter) {\n        const vec = new Float32Array(\n            row.embedding.buffer.slice(\n                row.embedding.byteOffset,\n                row.embedding.byteOffset + row.embedding.byteLength,\n            ),\n        );\n        cache.set(row[idCol] as number, vec);\n    }\n}\n\n/** Deps for reloading a single HNSW index from disk. */\ninterface ReloadDeps {\n    dbPath: string;\n    db: DatabaseAdapter;\n    name: string;\n    hnsw: HNSWIndex;\n    vecCache: Map<number, Float32Array>;\n    vectorTable: string;\n    idCol: string;\n}\n\n/**\n * Reload a single HNSW index from disk after detecting a stale version.\n * Reinitializes the in-memory HNSW, loads the saved index file, and\n * refreshes the vector cache from SQLite.\n */\nexport function reloadHnsw(deps: ReloadDeps): void {\n    const { dbPath, db, name, hnsw, vecCache, vectorTable, idCol } = deps;\n    const indexPath = hnswPath(dbPath, name);\n    const rowCount = countRows(db, vectorTable);\n\n    hnsw.reinit();\n    vecCache.clear();\n\n    if (hnsw.tryLoad(indexPath, rowCount)) {\n        loadVecCache(db, vectorTable, idCol, vecCache);\n    } else {\n        loadVectors(db, vectorTable, idCol, hnsw, vecCache);\n    }\n}\n","/**\n * BrainBank — Index API\n *\n * Orchestrates indexing across all registered plugins.\n * Plugin-agnostic — uses capability interfaces to discover what can be indexed.\n *\n * After each plugin finishes indexing, bumps the version in `index_state`\n * and saves HNSW indices to disk (with cross-process file locking).\n */\n\nimport type { DatabaseAdapter } from '@/db/adapter.ts';\nimport type { HNSWIndex } from '@/providers/vector/hnsw-index.ts';\nimport type { PluginRegistry } from '@/services/plugin-registry.ts';\nimport type { IndexResult, StageProgressCallback } from '@/types.ts';\n\nimport { bumpVersion } from '@/db/metadata.ts';\nimport { isIndexable } from '@/plugin.ts';\nimport { saveAllHnsw } from '@/providers/vector/hnsw-loader.ts';\n\n/** Deps injected by BrainBank at init time. */\nexport interface IndexDeps {\n    db: DatabaseAdapter;\n    dbPath: string;\n    sharedHnsw: Map<string, { hnsw: HNSWIndex; vecCache: Map<number, Float32Array> }>;\n    kvHnsw: HNSWIndex;\n    registry: PluginRegistry;\n    emit: (event: string, data: unknown) => void;\n}\n\n/** Merge two `IndexResult` values, accumulating counts. */\nfunction mergeResult(acc: IndexResult | undefined, r: IndexResult): IndexResult {\n    if (!acc) return { ...r };\n    return {\n        indexed: acc.indexed + r.indexed,\n        skipped: acc.skipped + r.skipped,\n        chunks: (acc.chunks ?? 0) + (r.chunks ?? 0),\n    };\n}\n\n/** Run indexing across all indexable plugins. Filter with `modules` (base types). */\nexport async function runIndex(deps: IndexDeps, options: {\n    modules?: string[];\n    forceReindex?: boolean;\n    onProgress?: StageProgressCallback;\n    /** Plugin-specific options forwarded to `IndexablePlugin.index()`. */\n    pluginOptions?: Record<string, unknown>;\n} = {}): Promise<Record<string, unknown>> {\n    const want = options.modules ? new Set(options.modules) : null;\n    const results: Record<string, unknown> = {};\n\n    for (const mod of deps.registry.all) {\n        const baseType = mod.name.split(':')[0];\n\n        if (want && !want.has(baseType)) continue;\n        if (!isIndexable(mod)) continue;\n\n        const label = mod.name;\n        options.onProgress?.(label, 'Starting...');\n\n        const r = await mod.index({\n            forceReindex: options.forceReindex,\n            onProgress: (msg: string, cur: number, total: number) =>\n                options.onProgress?.(label, `[${cur}/${total}] ${msg}`),\n            ...options.pluginOptions,\n        });\n\n        results[baseType] = mergeResult(results[baseType] as IndexResult | undefined, r);\n\n        // Bump version per plugin name (= HNSW key) so hot-reload resolves correctly.\n        // In multi-repo setups the HNSW key is the full name (e.g. 'code:backend'),\n        // not the base type ('code'). ensureFresh() matches against HNSW map keys.\n        bumpVersion(deps.db, mod.name);\n    }\n\n    // Save HNSW indices with file locking after all plugins complete\n    await saveAllHnsw(\n        deps.dbPath,\n        deps.kvHnsw,\n        deps.sharedHnsw,\n        new Map(),\n    );\n\n    deps.emit('indexed', results);\n    return results;\n}\n","/**\n * BrainBank — Re-embedding Engine\n * \n * Regenerates all vectors without re-indexing.\n * Reads existing text from SQLite, embeds with the current provider,\n * and replaces vector BLOBs. No file I/O, no git parsing, no re-chunking.\n * \n * Usage:\n *   const result = await brain.reembed({ onProgress });\n *   // → { code: 1200, git: 500, docs: 80, kv: 45, total: 1837 }\n */\n\nimport type { DatabaseAdapter, CountRow, VectorRow } from '@/db/adapter.ts';\nimport type { Plugin, ReembedTable } from '@/plugin.ts';\nimport type { HNSWIndex } from '@/providers/vector/hnsw-index.ts';\nimport type { EmbeddingProvider, ProgressCallback } from '@/types.ts';\n\nimport { setEmbeddingMeta } from '@/db/metadata.ts';\nimport { vecToBuffer } from '@/lib/math.ts';\nimport { isReembeddable } from '@/plugin.ts';\nimport { saveAllHnsw } from '@/providers/vector/hnsw-loader.ts';\n\n\nconst CORE_TABLES: ReembedTable[] = [\n    {\n        name: 'kv',\n        textTable: 'kv_data',\n        vectorTable: 'kv_vectors',\n        idColumn: 'id',\n        fkColumn: 'data_id',\n        textBuilder: (r) => String(r.content),\n    },\n];\n\n/** Collect reembed tables from plugins + core. Deduplicates by vectorTable for multi-repo. */\nfunction collectTables(plugins: Plugin[]): ReembedTable[] {\n    const byVectorTable = new Map<string, ReembedTable>();\n    for (const p of plugins) {\n        if (isReembeddable(p)) {\n            const config = p.reembedConfig();\n            byVectorTable.set(config.vectorTable, config);\n        }\n    }\n    for (const t of CORE_TABLES) {\n        byVectorTable.set(t.vectorTable, t);\n    }\n    return [...byVectorTable.values()];\n}\n\n\nexport interface ReembedResult {\n    /** Per-table vector counts. Keys are table names (e.g. 'code', 'git', 'docs', 'kv'). */\n    counts: Record<string, number>;\n    total: number;\n}\n\nexport interface ReembedOptions {\n    /** Progress callback: (tableName, current, total) */\n    onProgress?: ProgressCallback;\n    /** Batch size for embedBatch. Default: 50 */\n    batchSize?: number;\n}\n\n\n/**\n * Re-embed all existing text with the current embedding provider.\n * Does NOT re-parse files, git, or documents — only replaces vectors.\n */\nexport async function reembedAll(\n    db: DatabaseAdapter,\n    embedding: EmbeddingProvider,\n    hnswMap: Map<string, { hnsw: HNSWIndex; vecs: Map<number, Float32Array> }>,\n    plugins: Plugin[],\n    options: ReembedOptions = {},\n    persist?: {\n        dbPath: string;\n        kvHnsw: HNSWIndex;\n        sharedHnsw: Map<string, { hnsw: HNSWIndex; vecCache: Map<number, Float32Array> }>;\n    },\n): Promise<ReembedResult> {\n    const { batchSize = 50, onProgress } = options;\n    const tables = collectTables(plugins);\n    const counts: Record<string, number> = {};\n    let total = 0;\n\n    for (const table of tables) {\n        // Skip tables that don't exist (plugin not installed)\n        try {\n            const textExists = (db.prepare(\n                `SELECT COUNT(*) as c FROM sqlite_master WHERE type='table' AND name=?`\n            ).get(table.textTable) as CountRow).c;\n            const vecExists = (db.prepare(\n                `SELECT COUNT(*) as c FROM sqlite_master WHERE type='table' AND name=?`\n            ).get(table.vectorTable) as CountRow).c;\n            if (!textExists || !vecExists) continue;\n        } catch (e: unknown) {\n            if (e instanceof Error && e.message.includes('no such table')) continue;\n            throw e;\n        }\n\n        const count = await reembedTable(db, embedding, table, batchSize, onProgress);\n        counts[table.name] = count;\n        total += count;\n\n        // Rebuild HNSW if available\n        const entry = hnswMap.get(table.name);\n        if (entry && count > 0) {\n            await rebuildHnsw(db, table, entry.hnsw, entry.vecs);\n        }\n    }\n\n    // Persist provider metadata + HNSW indexes to disk\n    setEmbeddingMeta(db, embedding);\n    if (persist) {\n        saveAllHnsw(persist.dbPath, persist.kvHnsw, persist.sharedHnsw, new Map());\n    }\n\n    return {\n        counts,\n        total,\n    };\n}\n\n/**\n * Re-embed a single table. Returns count of vectors regenerated.\n * \n * Streams per-batch to avoid OOM on large tables — memory stays O(batchSize).\n * Tradeoff: if embedBatch fails mid-way, partial vectors exist. Reembed is\n * a destructive operation by design — re-run to completion if interrupted.\n */\nasync function reembedTable(\n    db: DatabaseAdapter,\n    embedding: EmbeddingProvider,\n    table: ReembedTable,\n    batchSize: number,\n    onProgress?: ProgressCallback,\n): Promise<number> {\n    const totalCount = (db.prepare(\n        `SELECT COUNT(*) as c FROM ${table.textTable}`\n    ).get() as CountRow).c;\n\n    if (totalCount === 0) return 0;\n\n    // Phase 1: Build new vectors in a temp table (safe — old data untouched)\n    const tempTable = `_reembed_${table.vectorTable}`;\n    db.exec(`DROP TABLE IF EXISTS ${tempTable}`);\n    db.exec(`CREATE TABLE ${tempTable} AS SELECT * FROM ${table.vectorTable} WHERE 0`);\n\n    const insertTemp = db.prepare(\n        `INSERT INTO ${tempTable} (${table.fkColumn}, embedding) VALUES (?, ?)`\n    );\n\n    let processed = 0;\n    try {\n        for (let offset = 0; offset < totalCount; offset += batchSize) {\n            const batch = db.prepare(\n                `SELECT * FROM ${table.textTable} LIMIT ? OFFSET ?`\n            ).all(batchSize, offset) as Record<string, unknown>[];\n            const texts = batch.map(r => table.textBuilder(r));\n            const vectors = await embedding.embedBatch(texts);\n\n            db.transaction(() => {\n                for (let j = 0; j < batch.length; j++) {\n                    insertTemp.run(batch[j][table.idColumn], vecToBuffer(vectors[j]));\n                }\n            });\n\n            processed += batch.length;\n            onProgress?.(table.name, processed, totalCount);\n        }\n\n        // Phase 2: Atomic swap — all or nothing\n        db.transaction(() => {\n            db.exec(`DELETE FROM ${table.vectorTable}`);\n            db.exec(`INSERT INTO ${table.vectorTable} SELECT * FROM ${tempTable}`);\n        });\n    } finally {\n        // Always clean up temp table — even if embedBatch fails mid-batch\n        db.exec(`DROP TABLE IF EXISTS ${tempTable}`);\n    }\n\n    return processed;\n}\n\n/** Rebuild HNSW index from vector table. */\nasync function rebuildHnsw(\n    db: DatabaseAdapter,\n    table: ReembedTable,\n    hnsw: HNSWIndex,\n    vecs: Map<number, Float32Array>,\n): Promise<void> {\n    // Wipe stale vectors before repopulating\n    vecs.clear();\n    hnsw.reinit();\n\n    const rows = db.prepare(\n        `SELECT ${table.fkColumn} as id, embedding FROM ${table.vectorTable}`\n    ).all() as VectorRow[];\n\n    for (const row of rows) {\n        const emb = row.embedding;\n        const vec = new Float32Array(emb.buffer.slice(emb.byteOffset, emb.byteOffset + emb.byteLength));\n        hnsw.add(vec, row.id);\n        vecs.set(row.id, vec);\n    }\n}\n","/**\n * BrainBank — Search API\n *\n * Thin orchestrator for all search operations.\n * Pipeline: collect → fuse (RRF) → rerank.\n *\n * Plugin-agnostic — discovers vector strategies and searchable plugins\n * via capability interfaces. No hardcoded plugin names.\n */\n\nimport type { DatabaseAdapter } from '@/db/adapter.ts';\nimport type { HNSWIndex } from '@/providers/vector/hnsw-index.ts';\nimport type { SearchStrategy, SearchOptions, DomainVectorSearch } from '@/search/types.ts';\nimport type { KVService } from '@/services/kv-service.ts';\nimport type { PluginRegistry } from '@/services/plugin-registry.ts';\nimport type { ResolvedConfig, EmbeddingProvider, SearchResult, ContextOptions } from '@/types.ts';\n\nimport { isVectorSearchPlugin, isSearchable, isCoEditPlugin, isContextFormatterPlugin } from '@/plugin.ts';\nimport { rerank } from '@/lib/rerank.ts';\nimport { reciprocalRankFusion } from '@/lib/rrf.ts';\nimport { ContextBuilder } from '@/search/context-builder.ts';\nimport { CompositeBM25Search } from '@/search/keyword/composite-bm25-search.ts';\nimport { CompositeVectorSearch } from '@/search/vector/composite-vector-search.ts';\nimport { logQuery } from '@/lib/logger.ts';\nimport type { QueryLogResult } from '@/lib/logger.ts';\nimport { providerKey } from '@/lib/provider-key.ts';\n\n/** Dependencies injected at construction time. */\nexport interface SearchAPIDeps {\n    search?:          SearchStrategy;\n    bm25?:            SearchStrategy;\n    registry:         PluginRegistry;\n    config:           ResolvedConfig;\n    kvService:        KVService;\n    contextBuilder?:  ContextBuilder;\n    embedding:        EmbeddingProvider;\n}\n\n/**\n * Build a fully-wired SearchAPI from registry state.\n * Discovers vector strategies from VectorSearchPlugin capability.\n * Always returns an instance — handles search-less setups internally.\n */\nexport function createSearchAPI(\n    _db: DatabaseAdapter,\n    embedding: EmbeddingProvider,\n    config: ResolvedConfig,\n    registry: PluginRegistry,\n    kvService: KVService,\n    sharedHnsw: Map<string, { hnsw: HNSWIndex; vecCache: Map<number, Float32Array> }>,\n): SearchAPI {\n    const strategies = new Map<string, DomainVectorSearch>();\n\n    for (const mod of registry.all) {\n        if (isVectorSearchPlugin(mod)) {\n            const vs = mod.createVectorSearch();\n            if (vs) {\n                // Use full plugin name (e.g. code:servicehub-backend)\n                // so each repo gets its own vector search strategy\n                strategies.set(mod.name, vs);\n            }\n        }\n    }\n\n    const search = strategies.size > 0\n        ? new CompositeVectorSearch({\n            strategies,\n            embedding,\n        })\n        : undefined;\n\n    const bm25 = new CompositeBM25Search(registry);\n\n    const rerankerName = config.reranker ? (config.reranker.constructor?.name ?? 'custom') : undefined;\n    const contextBuilder = new ContextBuilder(search, registry, config.pruner, embedding, rerankerName, config.contextFields ?? {}, config.expander);\n\n    return new SearchAPI({\n        search, bm25, registry, config,\n        kvService, contextBuilder, embedding,\n    });\n}\n\n\nexport class SearchAPI {\n    constructor(private _d: SearchAPIDeps) {}\n\n    /** Build formatted context block for LLM injection. */\n    async getContext(task: string, options: ContextOptions = {}): Promise<string> {\n        if (!this._d.contextBuilder) return '';\n        return this._d.contextBuilder.build(task, options);\n    }\n\n    /** Semantic search across all loaded modules. */\n    async search(query: string, options?: SearchOptions): Promise<SearchResult[]> {\n        const t0 = Date.now();\n        const lists: SearchResult[][] = [];\n\n        if (this._d.search) {\n            lists.push(await this._d.search.search(query, options));\n        }\n\n        lists.push(...await this._collectSearchablePlugins(query, options));\n\n        let results: SearchResult[];\n        if (lists.length === 0) results = [];\n        else if (lists.length === 1) results = lists[0];\n        else results = reciprocalRankFusion(lists);\n\n        this._logSearch('search', query, options, results, Date.now() - t0);\n        return results;\n    }\n\n    /** Hybrid search: vector + BM25 → RRF. */\n    async hybridSearch(query: string, options?: SearchOptions): Promise<SearchResult[]> {\n        const t0 = Date.now();\n        const src = options?.sources ?? {};\n        const lists: SearchResult[][] = [];\n\n        if (this._d.search) {\n            const [vec, kw] = await Promise.all([\n                this._d.search.search(query, options),\n                Promise.resolve(this._d.bm25?.search(query, options) ?? []),\n            ]);\n            lists.push(vec, kw);\n        }\n\n        lists.push(...await this._collectSearchablePlugins(query, options));\n        lists.push(...await this._collectKvCollections(query, src));\n\n        let results: SearchResult[];\n        if (lists.length === 0) results = [];\n        else {\n            const fused = reciprocalRankFusion(lists);\n            if (this._d.config.reranker && fused.length > 1) {\n                results = await rerank(query, fused, this._d.config.reranker);\n            } else {\n                results = fused;\n            }\n        }\n\n        this._logSearch('hybridSearch', query, options, results, Date.now() - t0);\n        return results;\n    }\n\n    /** BM25 keyword search only. */\n    async searchBM25(query: string, options?: SearchOptions): Promise<SearchResult[]> {\n        const t0 = Date.now();\n        const results = await this._d.bm25?.search(query, options) ?? [];\n        this._logSearch('searchBM25', query, options, results, Date.now() - t0);\n        return results;\n    }\n\n    /** Rebuild FTS5 indices. */\n    rebuildFTS(): void {\n        this._d.bm25?.rebuild?.();\n    }\n\n    /** Collect results from all SearchablePlugins (docs, custom). */\n    private async _collectSearchablePlugins(\n        query: string, options?: SearchOptions,\n    ): Promise<SearchResult[][]> {\n        const lists: SearchResult[][] = [];\n        for (const mod of this._d.registry.all) {\n            if (!isSearchable(mod)) continue;\n            // Skip plugins that already participate via VectorSearchPlugin\n            if (isVectorSearchPlugin(mod)) continue;\n            const hits = await mod.search(query, options ? { ...options } : undefined);\n            if (hits.length > 0) lists.push(hits);\n        }\n        return lists;\n    }\n\n    /** Collect results from KV collections named in sources. */\n    private async _collectKvCollections(\n        query: string, sources: Record<string, number>,\n    ): Promise<SearchResult[][]> {\n        const pluginNames = new Set(this._d.registry.names.map(n => n.split(':')[0]));\n        const lists: SearchResult[][] = [];\n        for (const [name, k] of Object.entries(sources)) {\n            if (pluginNames.has(name)) continue;\n            const hits = await this._d.kvService.collection(name).searchAsResults(query, k);\n            if (hits.length > 0) lists.push(hits);\n        }\n        return lists;\n    }\n\n    /** Log a search/hybridSearch/searchBM25 call. */\n    private _logSearch(\n        method: 'search' | 'hybridSearch' | 'searchBM25',\n        query: string,\n        options: SearchOptions | undefined,\n        results: SearchResult[],\n        durationMs: number,\n    ): void {\n        logQuery({\n            source: options?.source ?? 'api',\n            method,\n            query,\n            embedding: providerKey(this._d.embedding),\n            pruner: null,\n            reranker: this._d.config.reranker ? (this._d.config.reranker.constructor?.name ?? 'custom') : null,\n            options: {\n                sources: options?.sources,\n                minScore: options?.minScore,\n            },\n            results: results.map(_toLogResult),\n            durationMs,\n        });\n    }\n}\n\n// ── Helpers ──────────────────────────────────────────\n\nfunction _toLogResult(r: SearchResult): QueryLogResult {\n    const meta = r.metadata as Record<string, unknown> | undefined;\n    return {\n        filePath: r.filePath ?? 'unknown',\n        score: r.score,\n        type: r.type,\n        name: (meta?.name as string | undefined) ?? undefined,\n    };\n}\n","/**\n * BrainBank — Plugin Registry\n *\n * Manages registration and lookup of plugins.\n * Extracted from BrainBank so the facade stays focused on orchestration.\n *\n * Responsibilities:\n *   - Store plugins by name\n *   - Type-prefix matching  ('code' finds 'code:frontend', 'code:backend')\n *   - Alias resolution      (currently none; add here if needed)\n *   - Consistent error messages on missing plugins\n */\n\nimport type { Plugin } from '@/plugin.ts';\n\n/** Shorthand aliases that map public names to canonical plugin names. */\nconst ALIASES: Readonly<Record<string, string>> = {\n};\n\nexport class PluginRegistry {\n    private _map = new Map<string, Plugin>();\n\n\n    /** Store a plugin. Duplicate names silently overwrite. */\n    register(plugin: Plugin): void {\n        this._map.set(plugin.name, plugin);\n    }\n\n\n    /**\n     * Check whether a plugin is registered.\n     * Supports type-prefix matching: `has('code')` returns true if\n     * 'code', 'code:frontend', or 'code:backend' is registered.\n     */\n    has(name: string): boolean {\n        if (this._map.has(name)) return true;\n        for (const key of this._map.keys()) {\n            if (key.startsWith(name + ':')) return true;\n        }\n        return false;\n    }\n\n    /**\n     * Get a plugin by name.  Throws a descriptive error if not found.\n     *\n     * Resolution order:\n     *   1. Alias map   (currently empty)\n     *   2. Exact match\n     *   3. First type-prefix match  ('code' → 'code:frontend')\n     */\n    get<T extends Plugin = Plugin>(name: string): T {\n        const resolved = ALIASES[name] ?? name;\n\n        const exact = this._map.get(resolved);\n        if (exact) return exact as T;\n\n        const prefixed = this.firstByType(name);\n        if (prefixed) return prefixed as T;\n\n        throw new Error(\n            `BrainBank: Plugin '${name}' is not loaded. ` +\n            `Add .use(${name}()) to your BrainBank instance.`,\n        );\n    }\n\n    /**\n     * Return every plugin whose name equals `type` or starts with `type + ':'`.\n     * Example: allByType('code') → [code, code:frontend, code:backend]\n     */\n    allByType(type: string): Plugin[] {\n        return [...this._map.values()].filter(\n            m => m.name === type || m.name.startsWith(type + ':'),\n        );\n    }\n\n    /** Return the first plugin that matches the type prefix, or undefined. */\n    firstByType(type: string): Plugin | undefined {\n        for (const m of this._map.values()) {\n            if (m.name === type || m.name.startsWith(type + ':')) return m;\n        }\n        return undefined;\n    }\n\n\n    /** All registered plugin names (insertion order). */\n    get names(): string[] {\n        return [...this._map.keys()];\n    }\n\n    /** All registered plugin instances (insertion order). */\n    get all(): Plugin[] {\n        return [...this._map.values()];\n    }\n\n    /**\n     * Underlying Map.\n     * Prefer `all`, `allByType`, or `firstByType` everywhere else.\n     */\n    get raw(): Map<string, Plugin> {\n        return this._map;\n    }\n\n\n    /** Remove all registered plugins. Called by BrainBank.close(). */\n    clear(): void {\n        this._map.clear();\n    }\n}\n\n","/**\n * BrainBank CLI — Shared Utilities\n *\n * Colors, argument parsing, result formatting, and plugin discovery.\n */\n\nimport type { BrainBank } from '@/brainbank.ts';\nimport type { DocsPlugin } from '@/plugin.ts';\nimport type { SearchResult } from '@/types.ts';\n\nimport { isDocsPlugin } from '@/plugin.ts';\n\nexport const c = {\n    green:   (s: string) => `\\x1b[32m${s}\\x1b[0m`,\n    red:     (s: string) => `\\x1b[31m${s}\\x1b[0m`,\n    yellow:  (s: string) => `\\x1b[33m${s}\\x1b[0m`,\n    cyan:    (s: string) => `\\x1b[36m${s}\\x1b[0m`,\n    dim:     (s: string) => `\\x1b[2m${s}\\x1b[0m`,\n    bold:    (s: string) => `\\x1b[1m${s}\\x1b[0m`,\n    magenta: (s: string) => `\\x1b[35m${s}\\x1b[0m`,\n};\n\n\n/** Raw argv, sliced past the Node binary and script path. */\nexport const args = process.argv.slice(2);\n\nexport function getFlag(name: string): string | undefined {\n    const idx = args.indexOf(`--${name}`);\n    return idx >= 0 ? args[idx + 1] : undefined;\n}\n\n/** Collect all values for a repeated flag (--ignore a --ignore b) or comma-separated (--ignore a,b). */\nexport function getFlagAll(name: string): string[] {\n    const values: string[] = [];\n    const flag = `--${name}`;\n    for (let i = 0; i < args.length; i++) {\n        if (args[i] === flag && args[i + 1] && !args[i + 1].startsWith('--')) {\n            for (const v of args[i + 1].split(',')) {\n                const trimmed = v.trim();\n                if (trimmed) values.push(trimmed);\n            }\n            i++;\n        }\n    }\n    return values;\n}\n\nexport function hasFlag(name: string): boolean {\n    return args.includes(`--${name}`);\n}\n\n/** Known flags that take a value (--flag <value>). */\nconst VALUE_FLAGS = new Set([\n    'repo', 'depth', 'collection', 'pattern', 'context', 'name',\n    'keep', 'reranker', 'pruner', 'only', 'docs', 'path',\n    'ignore', 'meta', 'k', 'mode', 'limit',\n]);\n\n/**\n * Strip all --flags AND their values from an argv slice.\n * Returns only positional arguments.\n *\n * Handles:\n *   - Known VALUE_FLAGS: --repo /path → skip both\n *   - Dynamic source flags: --code 10 → skip both (any --name <number>)\n *   - Boolean flags: --force, --yes → skip flag only\n *\n *   stripFlags(['ksearch', 'auth', '--repo', '/path', '--code', '10'])\n *   → ['ksearch', 'auth']\n */\nexport function stripFlags(argv: string[]): string[] {\n    const result: string[] = [];\n    for (let i = 0; i < argv.length; i++) {\n        if (argv[i].startsWith('--')) {\n            const name = argv[i].slice(2);\n            const next = argv[i + 1];\n            // Known value flag or dynamic numeric value → skip both\n            if (next !== undefined && !next.startsWith('--')) {\n                if (VALUE_FLAGS.has(name) || /^\\d+$/.test(next)) {\n                    i++; // skip the value\n                }\n            }\n            continue;\n        }\n        result.push(argv[i]);\n    }\n    return result;\n}\n\n\nexport function printResults(results: SearchResult[], minScore = 0.70): void {\n    const filtered = results.filter(r => r.score >= minScore).slice(0, 20);\n\n    if (filtered.length === 0) {\n        console.log(c.yellow(`  No results above ${Math.round(minScore * 100)}% score.`));\n        return;\n    }\n\n    for (const r of filtered) {\n        const score = Math.round(r.score * 100);\n\n        if (r.type === 'code') {\n            const m = r.metadata;\n            console.log(\n                `${c.green(`[CODE ${score}%]`)} ${c.bold(r.filePath!)} — ` +\n                `${m.name || m.chunkType} ${c.dim(`L${m.startLine}-${m.endLine}`)}`,\n            );\n            console.log(c.dim(r.content.split('\\n').slice(0, 5).join('\\n')));\n            console.log('');\n        } else if (r.type === 'commit') {\n            const m = r.metadata;\n            console.log(\n                `${c.cyan(`[COMMIT ${score}%]`)} ${c.bold(m.shortHash)} ` +\n                `${r.content} ${c.dim(`(${m.author})`)}`,\n            );\n            if (m.files?.length) console.log(c.dim(`  Files: ${m.files.slice(0, 4).join(', ')}`));\n            console.log('');\n        } else if (r.type === 'document') {\n            const ctx = r.context ? ` — ${c.dim(r.context)}` : '';\n            console.log(\n                `${c.magenta(`[DOC ${score}%]`)} ${c.bold(r.filePath!)} ` +\n                `[${r.metadata.collection}]${ctx}`,\n            );\n            console.log(c.dim(r.content.split('\\n').slice(0, 4).join('\\n')));\n            console.log('');\n        }\n    }\n}\n\n/** Discover the first plugin that implements DocsPlugin by capability. */\nexport function findDocsPlugin(brain: BrainBank): DocsPlugin | undefined {\n    for (const name of brain.plugins) {\n        const p = brain.plugin(name);\n        if (p && isDocsPlugin(p)) return p;\n    }\n    return undefined;\n}\n","/**\n * BrainBank — Brain Context\n *\n * Portable input for `createBrain()`. Decouples the factory from\n * `process.argv` / `process.env` so it can be called from the CLI,\n * MCP server, tests, or any programmatic consumer.\n */\n\nimport { getFlag } from '../utils.ts';\n\n/** Everything the factory needs to build a BrainBank instance. */\nexport interface BrainContext {\n    /** Repository root path. */\n    repoPath: string;\n    /** Environment variable overrides. Falls back to `process.env`. */\n    env?: Record<string, string | undefined>;\n    /** CLI flag overrides (e.g. `{ ignore: 'dist,vendor' }`). */\n    flags?: Record<string, string | undefined>;\n}\n\n/** Build a `BrainContext` from CLI argv + process.env. */\nexport function contextFromCLI(repoPath?: string): BrainContext {\n    return {\n        repoPath: repoPath ?? getFlag('repo') ?? '.',\n        env: process.env as Record<string, string | undefined>,\n        flags: {\n            ignore: getFlag('ignore'),\n            reranker: getFlag('reranker'),\n            pruner: getFlag('pruner'),\n            embedding: getFlag('embedding'),\n        },\n    };\n}\n\n/** Read a flag from context, falling back to process.env equivalent. */\nexport function ctxFlag(ctx: BrainContext, name: string): string | undefined {\n    return ctx.flags?.[name];\n}\n\n/** Read an env var from context, falling back to process.env. */\nexport function ctxEnv(ctx: BrainContext, name: string): string | undefined {\n    return ctx.env?.[name] ?? process.env[name];\n}\n","/**\n * BrainBank CLI — Plugin Registration\n *\n * Generic plugin registration with multi-repo detection\n * and per-plugin config resolution. No hardcoded plugin names.\n */\n\nimport type { BrainBank } from '@/brainbank.ts';\nimport type { DocumentCollection } from '@/types.ts';\nimport type { ProjectConfig } from './config-loader.ts';\n\nimport * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport { c } from '../utils.ts';\nimport { loadPlugin, isMultiRepoCapable, resolveEmbeddingKey } from './plugin-loader.ts';\n\n/** Read a nested property from a generic config section. */\nfunction pluginCfg(config: ProjectConfig | null, pluginName: string): Record<string, unknown> {\n    const section = config?.[pluginName];\n    if (section && typeof section === 'object' && !Array.isArray(section)) {\n        return section as Record<string, unknown>;\n    }\n    return {};\n}\n\n/** Detect subdirectories that have their own .git repo. Respects optional `repos` whitelist. */\nfunction detectGitSubdirs(parentPath: string, repos?: string[]): { name: string; path: string }[] {\n    try {\n        const entries = fs.readdirSync(parentPath, { withFileTypes: true });\n        let subdirs = entries\n            .filter(e => {\n                if (e.name.startsWith('.') || e.name.startsWith('node_modules')) return false;\n                // Follow symlinks: isDirectory() is false for symlinks, so check via statSync\n                const isDir = e.isDirectory() || (e.isSymbolicLink() && fs.statSync(path.join(parentPath, e.name)).isDirectory());\n                return isDir && fs.existsSync(path.join(parentPath, e.name, '.git'));\n            })\n            .map(e => ({ name: e.name, path: path.join(parentPath, e.name) }));\n\n        if (repos && repos.length > 0) {\n            const allowed = new Set(repos);\n            subdirs = subdirs.filter(s => allowed.has(s.name));\n        }\n\n        return subdirs;\n    } catch { return []; }\n}\n\n/** Register plugins with multi-repo detection and per-plugin config. */\nexport async function registerBuiltins(\n    brain: BrainBank, rp: string, pluginNames: string[],\n    config: ProjectConfig | null, ignorePatterns: string[] = [],\n): Promise<void> {\n    const resolvedRp = path.resolve(rp);\n    const hasRootGit = fs.existsSync(path.join(resolvedRp, '.git'));\n    const configRepos = config?.repos as string[] | undefined;\n    const gitSubdirs = !hasRootGit ? detectGitSubdirs(resolvedRp, configRepos) : [];\n\n    for (const name of pluginNames) {\n        const factory = await loadPlugin(name);\n        if (!factory) {\n            console.error(c.yellow(`  ⚠ @brainbank/${name} not installed — skipping ${name} indexing`));\n            console.error(c.dim(`    Install: npm i -g @brainbank/${name}`));\n            continue;\n        }\n\n        const cfg = pluginCfg(config, name);\n\n        // Resolve per-plugin embedding if configured\n        const embKey = cfg.embedding as string | undefined;\n        const embeddingProvider = embKey ? await resolveEmbeddingKey(embKey) : undefined;\n\n        // Multi-repo: create one plugin instance per git subdir\n        if (gitSubdirs.length > 0 && isMultiRepoCapable(name)) {\n            console.error(c.cyan(`  Multi-repo: found ${gitSubdirs.length} git repos: ${gitSubdirs.map(d => d.name).join(', ')}`));\n            for (const sub of gitSubdirs) {\n                const mergedIgnore = [...(cfg.ignore as string[] ?? []), ...ignorePatterns];\n                brain.use(factory({\n                    ...cfg,\n                    repoPath: sub.path,\n                    name: `${name}:${sub.name}`,\n                    embeddingProvider,\n                    ignore: mergedIgnore.length > 0 ? mergedIgnore : undefined,\n                }));\n            }\n        } else {\n            // Single repo: merge ignore patterns for plugins that support them\n            const configIgnore = cfg.ignore as string[] | undefined ?? [];\n            const mergedIgnore = [...configIgnore, ...ignorePatterns];\n\n            brain.use(factory({\n                ...cfg,\n                repoPath: rp,\n                embeddingProvider,\n                ignore: mergedIgnore.length > 0 ? mergedIgnore : undefined,\n            }));\n        }\n    }\n}\n\n/** Register doc collections from config. Call after brain.initialize(). */\nexport async function registerConfigCollections(brain: BrainBank, rp: string, config: ProjectConfig | null): Promise<void> {\n    const docsCfg = pluginCfg(config, 'docs');\n    const collections = docsCfg.collections as DocumentCollection[] | undefined;\n    if (!collections?.length) return;\n\n    const { isDocsPlugin } = await import('@/plugin.ts');\n    const rawPlugin = brain.plugin('docs');\n    if (!rawPlugin || !isDocsPlugin(rawPlugin)) return;\n\n    const repoPath = path.resolve(rp);\n    for (const coll of collections) {\n        const absPath = path.resolve(repoPath, coll.path);\n        try {\n            await rawPlugin.addCollection({\n                name: coll.name, path: absPath,\n                pattern: coll.pattern ?? '**/*.md', ignore: coll.ignore, context: coll.context,\n            });\n        } catch (e: unknown) {\n            if (!(e instanceof Error && e.message.includes('already'))) throw e;\n            // Collection already registered — skip\n        }\n    }\n}\n","/**\n * BrainBank CLI — Plugin Loader\n *\n * Generic plugin loader registry with dynamic @brainbank/* package loading\n * and auto-discovery of user plugins from .brainbank/plugins/.\n */\n\nimport type { Plugin } from '@/plugin.ts';\nimport type { EmbeddingProvider } from '@/types.ts';\nimport type { ProjectConfig } from './config-loader.ts';\n\nimport * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport { c } from '../utils.ts';\n\n/** Plugin factory — accepts config, returns Plugin. */\ntype PluginFactory = (opts: Record<string, unknown>) => Plugin;\n\n/** Loader function: dynamically imports a package and returns its factory. */\ntype PluginLoaderFn = () => Promise<PluginFactory | null>;\n\n/** Built-in plugin loader registry. Extensible at runtime. */\nconst PLUGIN_LOADERS = new Map<string, PluginLoaderFn>([\n    ['code', async () => { try { return (await import('@brainbank/code')).code as PluginFactory; } catch { return null; } }],\n    ['git', async () => { try { return (await import('@brainbank/git')).git as PluginFactory; } catch { return null; } }],\n    ['docs', async () => { try { return (await import('@brainbank/docs')).docs as PluginFactory; } catch { return null; } }],\n]);\n\n/** Plugins that support multi-repo mode (one instance per git subdir). */\nconst MULTI_REPO_PLUGINS = new Set(['code', 'git']);\n\n/** Load a plugin factory by name. Returns null if not installed. */\nexport async function loadPlugin(name: string): Promise<PluginFactory | null> {\n    const loader = PLUGIN_LOADERS.get(name);\n    if (!loader) return null;\n    return loader();\n}\n\n/** Register a custom plugin loader. */\nexport function registerPluginLoader(name: string, loader: PluginLoaderFn): void {\n    PLUGIN_LOADERS.set(name, loader);\n}\n\n/** Check if a plugin supports multi-repo mode. */\nexport function isMultiRepoCapable(name: string): boolean {\n    return MULTI_REPO_PLUGINS.has(name);\n}\n\nconst INDEXER_EXTENSIONS = ['.ts', '.js', '.mjs'];\nconst NOT_LOADED = Symbol('not-loaded');\nlet _folderPluginsCache: Plugin[] | typeof NOT_LOADED = NOT_LOADED;\n\n/** Auto-discover plugins from .brainbank/plugins/ folder. */\nexport async function discoverFolderPlugins(repoPath: string): Promise<Plugin[]> {\n    if (_folderPluginsCache !== NOT_LOADED) return _folderPluginsCache;\n\n    const pluginsDir = path.resolve(repoPath, '.brainbank', 'plugins');\n\n    if (!fs.existsSync(pluginsDir)) {\n        _folderPluginsCache = [];\n        return [];\n    }\n\n    const files = fs.readdirSync(pluginsDir)\n        .filter(f => INDEXER_EXTENSIONS.some(ext => f.endsWith(ext)))\n        .sort();\n\n    const plugins: Plugin[] = [];\n\n    for (const file of files) {\n        const filePath = path.join(pluginsDir, file);\n        try {\n            const mod = await import(filePath);\n            const plugin = mod.default ?? mod;\n\n            if (plugin && typeof plugin === 'object' && plugin.name) {\n                plugins.push(plugin as Plugin);\n            } else {\n                console.error(c.yellow(`⚠ ${file}: must export a default Plugin with a 'name' property, skipping`));\n            }\n        } catch (err: unknown) {\n            const message = err instanceof Error ? err.message : String(err);\n            console.error(c.red(`Error loading plugin ${file}: ${message}`));\n        }\n    }\n\n    _folderPluginsCache = plugins;\n    return plugins;\n}\n\n/** Reset folder plugins cache. Useful for tests. */\nexport function resetPluginCache(): void {\n    _folderPluginsCache = NOT_LOADED;\n}\n\n/** Resolve an embedding key string to an EmbeddingProvider instance. */\nexport async function resolveEmbeddingKey(key: string): Promise<EmbeddingProvider> {\n    const { resolveEmbedding } = await import('@/providers/embeddings/resolve.ts');\n    return resolveEmbedding(key);\n}\n\n/** Configure reranker and global embedding provider on brainOpts. */\nexport async function setupProviders(\n    brainOpts: Record<string, unknown>,\n    config: ProjectConfig | null,\n    flags?: Record<string, string | undefined>,\n    env?: Record<string, string | undefined>,\n): Promise<void> {\n    // Resolve API keys: config.keys > env vars\n    const keys = config?.keys ?? {};\n    const anthropicKey = keys.anthropic || process.env.ANTHROPIC_API_KEY;\n    const perplexityKey = keys.perplexity || process.env.PERPLEXITY_API_KEY;\n    const openaiKey = keys.openai || process.env.OPENAI_API_KEY;\n\n    // Inject resolved keys into process.env so downstream providers auto-detect them\n    if (anthropicKey) process.env.ANTHROPIC_API_KEY = anthropicKey;\n    if (perplexityKey) process.env.PERPLEXITY_API_KEY = perplexityKey;\n    if (openaiKey) process.env.OPENAI_API_KEY = openaiKey;\n\n    const rerankerFlag = flags?.reranker ?? (config?.reranker as string | undefined);\n    if (rerankerFlag === 'qwen3') {\n        const { Qwen3Reranker } = await import('@/providers/rerankers/qwen3-reranker.ts');\n        brainOpts.reranker = new Qwen3Reranker();\n    }\n\n    const prunerFlag = flags?.pruner ?? (config?.pruner as string | undefined);\n    if (prunerFlag === 'haiku') {\n        const { HaikuPruner } = await import('@/providers/pruners/haiku-pruner.ts');\n        brainOpts.pruner = new HaikuPruner({ apiKey: anthropicKey });\n    }\n\n    // Expander: explicit opt-in only (config.json `expander: \"haiku\"` or --expander flag)\n    const expanderFlag = flags?.expander ?? (config?.expander as string | undefined);\n    if (expanderFlag === 'haiku') {\n        try {\n            const { HaikuExpander } = await import('@/providers/pruners/haiku-expander.ts');\n            brainOpts.expander = new HaikuExpander({ apiKey: anthropicKey });\n        } catch {\n            // Fail-open: if API key missing, skip expander silently\n        }\n    }\n\n    const embFlag = flags?.embedding\n        ?? (config?.embedding as string | undefined)\n        ?? env?.BRAINBANK_EMBEDDING\n        ?? process.env.BRAINBANK_EMBEDDING;\n    if (embFlag) {\n        const provider = await resolveEmbeddingKey(embFlag);\n        brainOpts.embeddingProvider = provider;\n        brainOpts.embeddingDims = provider.dims;\n    }\n\n    // Context field defaults from config.json \"context\" section\n    if (config?.context) {\n        brainOpts.contextFields = config.context;\n    }\n}\n","/**\n * BrainBank CLI — Config Loader\n *\n * Loads .brainbank/config.json (or .ts/.js/.mjs fallback).\n * Config priority: CLI flags > config file > defaults.\n */\n\nimport type { Plugin } from '@/plugin.ts';\nimport type { BrainBankConfig, DocumentCollection } from '@/types.ts';\n\nimport * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport { c } from '../utils.ts';\n\n/** Full .brainbank/config.json schema. */\nexport interface ProjectConfig {\n    plugins?: string[];\n    embedding?: string;\n    reranker?: string;\n    pruner?: string;\n    maxFileSize?: number;\n    indexers?: Plugin[];\n    brainbank?: Partial<BrainBankConfig>;\n    /** Optional API keys — override env vars. Kept out of version control. */\n    keys?: {\n        anthropic?: string;\n        perplexity?: string;\n        openai?: string;\n    };\n    /** Context field defaults (e.g. { lines: true, callTree: true, symbols: false }). */\n    context?: Record<string, unknown>;\n    /** Per-plugin config sections (e.g. code, git, docs). */\n    [pluginName: string]: unknown;\n}\n\nconst CONFIG_NAMES = ['config.json', 'config.ts', 'config.js', 'config.mjs'];\nconst NOT_LOADED = Symbol('not-loaded');\nlet _configCache: ProjectConfig | null | typeof NOT_LOADED = NOT_LOADED;\n\n/** Load .brainbank/config.json (or .ts fallback) if present. */\nexport async function loadConfig(repoPath: string): Promise<ProjectConfig | null> {\n    if (_configCache !== NOT_LOADED) return _configCache;\n\n    const brainbankDir = path.resolve(repoPath, '.brainbank');\n\n    for (const name of CONFIG_NAMES) {\n        const configPath = path.join(brainbankDir, name);\n        if (!fs.existsSync(configPath)) continue;\n\n        try {\n            if (name === 'config.json') {\n                const raw = fs.readFileSync(configPath, 'utf-8');\n                _configCache = JSON.parse(raw) as ProjectConfig;\n            } else {\n                const mod = await import(configPath);\n                _configCache = (mod.default ?? mod) as ProjectConfig;\n            }\n            return _configCache;\n        } catch (err: unknown) {\n            const message = err instanceof Error ? err.message : String(err);\n            console.error(c.red(`Error loading .brainbank/${name}: ${message}`));\n            process.exit(1);\n        }\n    }\n\n    _configCache = null;\n    return null;\n}\n\n/** Get the loaded config (for use by commands). */\nexport async function getConfig(repoPath?: string): Promise<ProjectConfig | null> {\n    return loadConfig(repoPath ?? '.');\n}\n\n/** Reset config cache. 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Useful for tests. */\nexport function resetFactoryCache(): void {\n    resetConfigCache();\n    resetPluginCache();\n}\n\n/**\n * Create a BrainBank with built-in + discovered + config plugins.\n *\n * Accepts either a `BrainContext` (for programmatic use) or an optional\n * `repoPath` string (for CLI backward compat — builds context from argv).\n */\nexport async function createBrain(contextOrRepo?: BrainContext | string): Promise<BrainBank> {\n    const ctx: BrainContext = typeof contextOrRepo === 'string'\n        ? contextFromCLI(contextOrRepo)\n        : contextOrRepo ?? contextFromCLI();\n\n    const rp = ctx.repoPath;\n    const config = await loadConfig(rp);\n    const folderPlugins = await discoverFolderPlugins(rp);\n\n    const brainOpts: Partial<BrainBankConfig> & Record<string, unknown> = { repoPath: rp, ...(config?.brainbank ?? {}) };\n    if (config?.maxFileSize) brainOpts.maxFileSize = config.maxFileSize as number;\n    await setupProviders(brainOpts, config, ctx.flags, ctx.env);\n\n    const brain = new BrainBank(brainOpts);\n    const builtins = config?.plugins ?? ['code', 'git', 'docs'];\n\n    // Merge ignore patterns from context flags\n    const ignoreFlag = ctxFlag(ctx, 'ignore');\n    const ignorePatterns = ignoreFlag ? ignoreFlag.split(',').map(s => s.trim()) : [];\n\n    await registerBuiltins(brain, rp, builtins, config, ignorePatterns);\n\n    for (const plugin of folderPlugins) brain.use(plugin);\n\n    if (config?.indexers) {\n        for (const plugin of config.indexers as Plugin[]) brain.use(plugin);\n    }\n\n    return 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