brainbank 0.2.0 → 0.2.2

package/dist/chunk-ZJ5LLMGM.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/config/defaults.ts","../src/app/collection.ts","../src/providers/vector/hnsw.ts","../src/providers/embeddings/local.ts","../src/search/vector/mmr.ts","../src/search/vector/multi-index.ts","../src/search/keyword/bm25.ts","../src/app/context-builder.ts","../src/app/brainbank.ts","../src/app/registry.ts","../src/db/database.ts","../src/db/schema.ts","../src/services/reembed.ts","../src/app/initializer.ts","../src/app/search-api.ts","../src/app/index-api.ts","../src/services/watch.ts"],"sourcesContent":["import type { BrainBankConfig, ResolvedConfig } from '../types.ts';\nimport * as path from 'node:path';\n\n// ── Defaults ────────────────────────────────────────\n\nexport const DEFAULTS: ResolvedConfig = {\n    repoPath: '.',\n    dbPath: '.brainbank/brainbank.db',\n    gitDepth: 500,\n    maxFileSize: 512_000,      // 500KB\n    maxDiffBytes: 8192,\n    hnswM: 16,\n    hnswEfConstruction: 200,\n    hnswEfSearch: 50,\n    embeddingDims: 384,\n    maxElements: 2_000_000,\n};\n\n// ── Resolver ────────────────────────────────────────\n\n/**\n * Merge partial config with defaults.\n * All fields become required.\n * Relative dbPath is resolved against repoPath.\n */\nexport function resolveConfig(partial: BrainBankConfig = {}): ResolvedConfig {\n    const repoPath = path.resolve(partial.repoPath ?? DEFAULTS.repoPath);\n    const rawDbPath = partial.dbPath ?? DEFAULTS.dbPath;\n    // Resolve relative dbPath against repoPath so DB lives alongside the repo\n    const dbPath = path.isAbsolute(rawDbPath) ? rawDbPath : path.join(repoPath, rawDbPath);\n\n    return {\n        repoPath,\n        dbPath,\n        gitDepth:          partial.gitDepth          ?? DEFAULTS.gitDepth,\n        maxFileSize:       partial.maxFileSize       ?? DEFAULTS.maxFileSize,\n        maxDiffBytes:      partial.maxDiffBytes      ?? DEFAULTS.maxDiffBytes,\n        hnswM:             partial.hnswM             ?? DEFAULTS.hnswM,\n        hnswEfConstruction: partial.hnswEfConstruction ?? DEFAULTS.hnswEfConstruction,\n        hnswEfSearch:      partial.hnswEfSearch      ?? DEFAULTS.hnswEfSearch,\n        embeddingDims:     partial.embeddingDims     ?? DEFAULTS.embeddingDims,\n        maxElements:       partial.maxElements       ?? DEFAULTS.maxElements,\n        embeddingProvider: partial.embeddingProvider,\n        reranker: partial.reranker,\n    };\n}\n\n","/**\n * BrainBank — Collection\n * \n * Universal key-value store with vector + BM25 hybrid search.\n * The foundation primitive — store anything, search semantically.\n * \n *   const errors = brain.collection('debug_errors');\n *   await errors.add('Fixed null check in api handler', { file: 'api.ts' });\n *   const hits = await errors.search('null pointer');\n */\n\nimport type { Database } from '../db/database.ts';\nimport type { EmbeddingProvider, Reranker } from '../types.ts';\nimport type { HNSWIndex } from '../providers/vector/hnsw.ts';\nimport { reciprocalRankFusion } from '../search/rrf.ts';\nimport { sanitizeFTS, normalizeBM25 } from '../search/keyword/utils.ts';\n\nexport interface CollectionItem {\n    id: number;\n    collection: string;\n    content: string;\n    metadata: Record<string, any>;\n    tags: string[];\n    createdAt: number;\n    expiresAt?: number;\n    score?: number;\n}\n\nexport interface CollectionSearchOptions {\n    /** Max results. Default: 5 */\n    k?: number;\n    /** Search mode. Default: 'hybrid' */\n    mode?: 'hybrid' | 'vector' | 'keyword';\n    /** Minimum score threshold. Default: 0.15 */\n    minScore?: number;\n    /** Filter by tags (item must have ALL specified tags). */\n    tags?: string[];\n}\n\nexport interface CollectionAddOptions {\n    /** Metadata key-value pairs. */\n    metadata?: Record<string, any>;\n    /** Tags for filtering. */\n    tags?: string[];\n    /** Time-to-live duration string (e.g. '7d', '24h', '30m'). */\n    ttl?: string;\n}\n\nexport class Collection {\n    constructor(\n        private _name: string,\n        private _db: Database,\n        private _embedding: EmbeddingProvider,\n        private _hnsw: HNSWIndex,\n        private _vecs: Map<number, Float32Array>,\n        private _reranker?: Reranker,\n    ) {}\n\n    /** Collection name. */\n    get name(): string { return this._name; }\n\n    /** Add an item. Returns its ID. */\n    async add(content: string, options: CollectionAddOptions | Record<string, any> = {}): Promise<number> {\n        // Support both signatures: add(content, { metadata, tags, ttl }) and add(content, metadata)\n        const opts = 'tags' in options || 'ttl' in options || 'metadata' in options\n            ? options as CollectionAddOptions\n            : { metadata: options as Record<string, any> };\n\n        const metadata = opts.metadata ?? {};\n        const tags = opts.tags ?? [];\n        const expiresAt = opts.ttl ? Math.floor(Date.now() / 1000) + parseDuration(opts.ttl) : null;\n\n        // Embed FIRST — if this throws, no orphaned rows are left in kv_data\n        const vec = await this._embedding.embed(content);\n\n        const result = this._db.prepare(\n            'INSERT INTO kv_data (collection, content, meta_json, tags_json, expires_at) VALUES (?, ?, ?, ?, ?)'\n        ).run(this._name, content, JSON.stringify(metadata), JSON.stringify(tags), expiresAt);\n\n        const id = Number(result.lastInsertRowid);\n        this._db.prepare(\n            'INSERT INTO kv_vectors (data_id, embedding) VALUES (?, ?)'\n        ).run(id, Buffer.from(vec.buffer));\n\n        this._hnsw.add(vec, id);\n        this._vecs.set(id, vec);\n\n        return id;\n    }\n\n    /** Add multiple items. Returns their IDs. */\n    async addMany(items: { content: string; metadata?: Record<string, any>; tags?: string[]; ttl?: string }[]): Promise<number[]> {\n        if (items.length === 0) return [];\n\n        // Batch embed all texts at once\n        const texts = items.map(i => i.content);\n        const vecs = await this._embedding.embedBatch(texts);\n\n        // Commit DB rows atomically. HNSW is updated ONLY after this succeeds.\n        // If the transaction throws, execution never reaches the HNSW loop below.\n        const ids: number[] = [];\n        const insertData = this._db.prepare(\n            'INSERT INTO kv_data (collection, content, meta_json, tags_json, expires_at) VALUES (?, ?, ?, ?, ?)'\n        );\n        const insertVec = this._db.prepare(\n            'INSERT INTO kv_vectors (data_id, embedding) VALUES (?, ?)'\n        );\n\n        this._db.transaction(() => {\n            for (let i = 0; i < items.length; i++) {\n                const item = items[i];\n                const expiresAt = item.ttl ? Math.floor(Date.now() / 1000) + parseDuration(item.ttl) : null;\n\n                const result = insertData.run(\n                    this._name,\n                    item.content,\n                    JSON.stringify(item.metadata ?? {}),\n                    JSON.stringify(item.tags ?? []),\n                    expiresAt,\n                );\n\n                const id = Number(result.lastInsertRowid);\n                insertVec.run(id, Buffer.from(vecs[i].buffer));\n                ids.push(id);\n            }\n        });\n\n        // HNSW + cache updated after successful commit — no orphan risk on rollback.\n        for (let i = 0; i < ids.length; i++) {\n            this._hnsw.add(vecs[i], ids[i]);\n            this._vecs.set(ids[i], vecs[i]);\n        }\n\n        return ids;\n    }\n\n    /** Search this collection. */\n    async search(query: string, options: CollectionSearchOptions = {}): Promise<CollectionItem[]> {\n        const { k = 5, mode = 'hybrid', minScore = 0.15, tags } = options;\n\n        // Auto-prune expired items before search\n        this._pruneExpired();\n\n        if (mode === 'keyword') return this._filterByTags(this._searchBM25(query, k, minScore), tags);\n        if (mode === 'vector') return this._filterByTags(await this._searchVector(query, k, minScore), tags);\n\n        // Hybrid: vector + BM25 → RRF\n        const [vectorHits, bm25Hits] = await Promise.all([\n            this._searchVector(query, k, 0),\n            Promise.resolve(this._searchBM25(query, k, 0)),\n        ]);\n\n        const fused = reciprocalRankFusion([\n            vectorHits.map(h => ({ type: 'document' as const, score: h.score ?? 0, content: h.content, metadata: { id: h.id } as any })),\n            bm25Hits.map(h => ({ type: 'document' as const, score: h.score ?? 0, content: h.content, metadata: { id: h.id } as any })),\n        ]);\n\n        const allById = new Map<number, CollectionItem>();\n        for (const h of [...vectorHits, ...bm25Hits]) allById.set(h.id, h);\n\n        const results: CollectionItem[] = [];\n        for (const r of fused) {\n            const item = allById.get((r.metadata as any).id);\n            if (!item) continue;\n            const scored = { ...item, score: r.score };\n            if (scored.score >= minScore) results.push(scored);\n            if (results.length >= k) break;\n        }\n\n        // Apply re-ranking if available\n        if (this._reranker && results.length > 1) {\n            const documents = results.map(r => r.content);\n            const scores = await this._reranker.rank(query, documents);\n            const blended = results.map((r, i) => ({\n                ...r,\n                score: 0.6 * (r.score ?? 0) + 0.4 * (scores[i] ?? 0),\n            }));\n            return this._filterByTags(\n                blended.sort((a, b) => (b.score ?? 0) - (a.score ?? 0)),\n                tags,\n            );\n        }\n\n        return this._filterByTags(results, tags);\n    }\n\n    /** List items (newest first). */\n    list(options: { limit?: number; offset?: number; tags?: string[] } = {}): CollectionItem[] {\n        const { limit = 20, offset = 0, tags } = options;\n\n        // Auto-prune expired items\n        this._pruneExpired();\n\n        const rows = this._db.prepare(\n            'SELECT * FROM kv_data WHERE collection = ? AND (expires_at IS NULL OR expires_at > ?) ORDER BY created_at DESC, id DESC LIMIT ? OFFSET ?'\n        ).all(this._name, Math.floor(Date.now() / 1000), limit, offset) as any[];\n        return this._filterByTags(rows.map(r => this._rowToItem(r)), tags);\n    }\n\n    /** Count items in this collection. */\n    count(): number {\n        return (this._db.prepare(\n            'SELECT COUNT(*) as c FROM kv_data WHERE collection = ? AND (expires_at IS NULL OR expires_at > ?)'\n        ).get(this._name, Math.floor(Date.now() / 1000)) as any).c;\n    }\n\n    /** Keep only the N most recent items, remove the rest. */\n    async trim(options: { keep: number }): Promise<{ removed: number }> {\n        const before = this.count();\n        if (before <= options.keep) return { removed: 0 };\n\n        // Get IDs to remove (oldest first, beyond the keep window)\n        const toRemove = this._db.prepare(`\n            SELECT id FROM kv_data \n            WHERE collection = ? \n            ORDER BY created_at DESC, id DESC \n            LIMIT -1 OFFSET ?\n        `).all(this._name, options.keep) as any[];\n\n        for (const row of toRemove) {\n            this._removeById(row.id);\n        }\n\n        return { removed: toRemove.length };\n    }\n\n    /** Remove items older than a duration string (e.g. '30d', '12h'). */\n    async prune(options: { olderThan: string }): Promise<{ removed: number }> {\n        const seconds = parseDuration(options.olderThan);\n        const cutoff = Math.floor(Date.now() / 1000) - seconds;\n\n        const toRemove = this._db.prepare(\n            'SELECT id FROM kv_data WHERE collection = ? AND created_at < ?'\n        ).all(this._name, cutoff) as any[];\n\n        for (const row of toRemove) {\n            this._removeById(row.id);\n        }\n\n        return { removed: toRemove.length };\n    }\n\n    /** Remove a specific item by ID. */\n    remove(id: number): void {\n        this._removeById(id);\n    }\n\n    /** Clear all items in this collection. */\n    clear(): void {\n        const rows = this._db.prepare(\n            'SELECT id FROM kv_data WHERE collection = ?'\n        ).all(this._name) as any[];\n\n        for (const row of rows) {\n            this._removeById(row.id);\n        }\n    }\n\n    // ── Private ──────────────────────────────────────\n\n    private _removeById(id: number): void {\n        // Remove from vector cache\n        this._vecs.delete(id);\n        // Mark as deleted in HNSW (prevents ghost entries in search)\n        this._hnsw.remove(id);\n        // Remove from DB (cascades to kv_vectors, FTS trigger handles fts_kv)\n        this._db.prepare('DELETE FROM kv_data WHERE id = ?').run(id);\n    }\n\n    private async _searchVector(query: string, k: number, minScore: number): Promise<CollectionItem[]> {\n        if (this._hnsw.size === 0) return [];\n\n        const queryVec = await this._embedding.embed(query);\n        // Scale search by HNSW-to-collection ratio to ensure enough candidates\n        // when many collections share the same HNSW index\n        const now = Math.floor(Date.now() / 1000);\n        const collectionCount = (this._db.prepare(\n            'SELECT COUNT(*) as c FROM kv_data WHERE collection = ? AND (expires_at IS NULL OR expires_at > ?)'\n        ).get(this._name, now) as any)?.c ?? 0;\n        const ratio = collectionCount > 0 ? Math.max(3, Math.min(50, Math.ceil(this._hnsw.size / collectionCount))) : 3;\n        const searchK = Math.min(k * ratio, this._hnsw.size);\n        const hits = this._hnsw.search(queryVec, searchK);\n\n        const ids = hits.map(h => h.id);\n        if (ids.length === 0) return [];\n\n        const scoreMap = new Map(hits.map(h => [h.id, h.score]));\n        const placeholders = ids.map(() => '?').join(',');\n\n        const rows = this._db.prepare(\n            `SELECT * FROM kv_data WHERE id IN (${placeholders}) AND collection = ?`\n        ).all(...ids, this._name) as any[];\n\n        return rows\n            .map(r => ({ ...this._rowToItem(r), score: scoreMap.get(r.id) ?? 0 }))\n            .filter(r => r.score >= minScore)\n            .sort((a, b) => (b.score ?? 0) - (a.score ?? 0))\n            .slice(0, k);\n    }\n\n    private _searchBM25(query: string, k: number, minScore: number): CollectionItem[] {\n        const ftsQuery = sanitizeFTS(query);\n        if (!ftsQuery) return [];\n\n        try {\n            const rows = this._db.prepare(`\n                SELECT d.*, bm25(fts_kv, 5.0, 1.0) AS score\n                FROM fts_kv f\n                JOIN kv_data d ON d.id = f.rowid\n                WHERE fts_kv MATCH ? AND d.collection = ?\n                ORDER BY score ASC\n                LIMIT ?\n            `).all(ftsQuery, this._name, k) as any[];\n\n            return rows\n                .map(r => ({\n                    ...this._rowToItem(r),\n                    score: normalizeBM25(r.score),\n                }))\n                .filter(r => (r.score ?? 0) >= minScore);\n        } catch {\n            return [];\n        }\n    }\n\n    private _rowToItem(r: any): CollectionItem {\n        return {\n            id: r.id,\n            collection: r.collection,\n            content: r.content,\n            metadata: JSON.parse(r.meta_json || '{}'),\n            tags: JSON.parse(r.tags_json || '[]'),\n            createdAt: r.created_at,\n            expiresAt: r.expires_at ?? undefined,\n        };\n    }\n\n    /** Filter results by tags (item must have ALL specified tags). */\n    private _filterByTags(items: CollectionItem[], tags?: string[]): CollectionItem[] {\n        if (!tags || tags.length === 0) return items;\n        return items.filter(item =>\n            tags.every(t => item.tags.includes(t))\n        );\n    }\n\n    /** Remove expired items (TTL). Called automatically on search/list. */\n    private _pruneExpired(): void {\n        const now = Math.floor(Date.now() / 1000);\n        const expired = this._db.prepare(\n            'SELECT id FROM kv_data WHERE collection = ? AND expires_at IS NOT NULL AND expires_at <= ?'\n        ).all(this._name, now) as any[];\n\n        for (const row of expired) {\n            this._removeById(row.id);\n        }\n    }\n}\n\n/** Parse a duration string like '30d', '12h', '5m' to seconds. */\nfunction parseDuration(s: string): number {\n    const match = s.match(/^(\\d+)([dhms])$/);\n    if (!match) throw new Error(`Invalid duration: \"${s}\". Use format like '30d', '12h', '5m'.`);\n\n    const n = parseInt(match[1], 10);\n    switch (match[2]) {\n        case 'd': return n * 86400;\n        case 'h': return n * 3600;\n        case 'm': return n * 60;\n        case 's': return n;\n        default: return n;\n    }\n}\n","/**\n * BrainBank — HNSW Vector Index\n * \n * Wraps hnswlib-node for O(log n) approximate nearest neighbor search.\n * M=16 connections, ef=200 construction, ef=50 search by default.\n * 150x faster than brute force at 1M vectors.\n */\n\nimport type { VectorIndex, SearchHit } from '../../types.ts';\n\nexport class HNSWIndex implements VectorIndex {\n    private _index: any = null;\n    private _lib: any = null;\n    private _ids = new Set<number>();\n\n    constructor(\n        private _dims: number,\n        private _maxElements: number = 2_000_000,\n        private _M: number = 16,\n        private _efConstruction: number = 200,\n        private _efSearch: number = 50,\n    ) {}\n\n    /**\n     * Initialize the HNSW index.\n     * Must be called before add/search.\n     */\n    async init(): Promise<this> {\n        this._lib = await import('hnswlib-node');\n        this._createIndex();\n        return this;\n    }\n\n    /**\n     * Reinitialize the index in-place, clearing all vectors.\n     * Required after reembed or full re-index to avoid duplicate IDs.\n     * init() must have been called first.\n     */\n    reinit(): void {\n        if (!this._lib) throw new Error('HNSW not initialized — call init() first');\n        this._createIndex();\n    }\n\n    private _createIndex(): void {\n        const HNSW = this._lib.default?.HierarchicalNSW ?? this._lib.HierarchicalNSW;\n        this._index = new HNSW('cosine', this._dims);\n        this._index.initIndex(this._maxElements, this._M, this._efConstruction);\n        this._index.setEf(this._efSearch);\n        this._ids = new Set();\n    }\n\n    /** Maximum capacity of this index. */\n    get maxElements(): number { return this._maxElements; }\n\n    /**\n     * Add a vector with an integer ID.\n     * The vector should be pre-normalized for cosine distance.\n     */\n    add(vector: Float32Array, id: number): void {\n        if (!this._index) throw new Error('HNSW index not initialized — call init() first');\n        if (this._ids.has(id)) return; // idempotent: skip duplicates\n        if (this._ids.size >= this._maxElements) {\n            throw new Error(\n                `HNSW index full (${this._maxElements} elements). ` +\n                `Increase maxElements in config or prune old data.`\n            );\n        }\n        this._index.addPoint(Array.from(vector), id);\n        this._ids.add(id);\n    }\n\n    /**\n     * Mark a vector as deleted so it no longer appears in searches.\n     * Uses hnswlib-node markDelete under the hood.\n     * Safe to call with an ID that doesn't exist.\n     */\n    remove(id: number): void {\n        if (!this._index || this._ids.size === 0) return;\n        if (!this._ids.has(id)) return;\n        try {\n            this._index.markDelete(id);\n            this._ids.delete(id);\n        } catch {\n            // ID not found — ignore silently\n        }\n    }\n\n    /**\n     * Search for the k nearest neighbors.\n     * Returns results sorted by score (highest first).\n     * Score is 1 - cosine_distance (1.0 = identical).\n     */\n    search(query: Float32Array, k: number): SearchHit[] {\n        if (!this._index || this._ids.size === 0) return [];\n\n        const actualK = Math.min(k, this._ids.size);\n        const result = this._index.searchKnn(Array.from(query), actualK);\n\n        return result.neighbors.map((id: number, i: number) => ({\n            id,\n            score: 1 - result.distances[i],\n        }));\n    }\n\n    /** Number of vectors in the index. */\n    get size(): number {\n        return this._ids.size;\n    }\n}\n","/**\n * BrainBank — Local Embedding Provider\n * \n * Uses @xenova/transformers with all-MiniLM-L6-v2 (384 dims, WASM).\n * Downloads ~23MB on first use, cached locally.\n * No external API calls — runs entirely in-process.\n */\n\nimport type { EmbeddingProvider } from '../../types.ts';\n\nexport class LocalEmbedding implements EmbeddingProvider {\n    readonly dims: number = 384;\n\n    private _pipeline: any = null;\n    private _modelName: string;\n    private _cacheDir: string;\n\n    constructor(options: { model?: string; cacheDir?: string } = {}) {\n        this._modelName = options.model ?? 'Xenova/all-MiniLM-L6-v2';\n        this._cacheDir = options.cacheDir ?? '.model-cache';\n    }\n\n    private _pipelinePromise: Promise<any> | null = null;\n\n    /**\n     * Lazy-load the transformer pipeline.\n     * Singleton — created once and reused.\n     * Promise-deduped to prevent concurrent downloads.\n     */\n    private async _getPipeline(): Promise<any> {\n        if (this._pipeline) return this._pipeline;\n        if (this._pipelinePromise) return this._pipelinePromise;\n\n        this._pipelinePromise = (async () => {\n            const { pipeline, env } = await import('@xenova/transformers' as any);\n            env.cacheDir = this._cacheDir;\n            env.allowLocalModels = true;\n\n            this._pipeline = await pipeline('feature-extraction', this._modelName, {\n                quantized: true,\n            });\n\n            return this._pipeline;\n        })();\n\n        try {\n            return await this._pipelinePromise;\n        } finally {\n            this._pipelinePromise = null;\n        }\n    }\n\n    /**\n     * Embed a single text string.\n     * Returns a normalized Float32Array of length 384.\n     */\n    async embed(text: string): Promise<Float32Array> {\n        const pipe = await this._getPipeline();\n        const output = await pipe(text, { pooling: 'mean', normalize: true });\n        return output.data as Float32Array;\n    }\n\n    /**\n     * Embed multiple texts.\n     * Processes sequentially to avoid OOM on large batches.\n     */\n    async embedBatch(texts: string[]): Promise<Float32Array[]> {\n        const results: Float32Array[] = [];\n        for (const text of texts) {\n            results.push(await this.embed(text));\n        }\n        return results;\n    }\n\n    async close(): Promise<void> {\n        this._pipeline = null;\n    }\n}\n","/**\n * BrainBank — Maximum Marginal Relevance (MMR)\n * \n * Diversifies vector search results to avoid returning redundant items.\n * λ=1.0 → pure relevance, λ=0.0 → pure diversity.\n * Default λ=0.7 balances both.\n */\n\nimport type { VectorIndex, SearchHit } from '../../types.ts';\nimport { cosineSimilarity } from '../../lib/math.ts';\n\n/**\n * Search with Maximum Marginal Relevance for diversified results.\n * \n * Algorithm:\n *   1. Get 3x candidates from HNSW\n *   2. Greedily select items that maximize: λ * relevance - (1-λ) * max_sim_to_selected\n */\nexport function searchMMR(\n    index: VectorIndex,\n    query: Float32Array,\n    vectorCache: Map<number, Float32Array>,\n    k: number,\n    lambda: number = 0.7,\n): SearchHit[] {\n    // Get more candidates than needed\n    const candidates = index.search(query, k * 3);\n    if (candidates.length <= k) return candidates;\n\n    const selected: SearchHit[] = [];\n    const remaining = [...candidates];\n\n    while (selected.length < k && remaining.length > 0) {\n        let bestScore = -Infinity;\n        let bestIdx = 0;\n\n        for (let i = 0; i < remaining.length; i++) {\n            const relevance = remaining[i].score;\n\n            // Max similarity to any already-selected item\n            let maxSim = 0;\n            for (const sel of selected) {\n                const candidateVec = vectorCache.get(remaining[i].id);\n                const selectedVec = vectorCache.get(sel.id);\n                if (candidateVec && selectedVec) {\n                    maxSim = Math.max(maxSim, cosineSimilarity(candidateVec, selectedVec));\n                }\n            }\n\n            // MMR score: balance relevance vs diversity\n            const mmrScore = lambda * relevance - (1 - lambda) * maxSim;\n\n            if (mmrScore > bestScore) {\n                bestScore = mmrScore;\n                bestIdx = i;\n            }\n        }\n\n        selected.push(remaining[bestIdx]);\n        remaining.splice(bestIdx, 1);\n    }\n\n    return selected;\n}\n","/**\n * BrainBank — Multi-Index Search\n * \n * Searches across all three indices (code, git, memory patterns)\n * and returns typed results sorted by relevance.\n */\n\nimport type { Database } from '../../db/database.ts';\nimport type { EmbeddingProvider, Reranker, SearchResult } from '../../types.ts';\nimport type { HNSWIndex } from '../../providers/vector/hnsw.ts';\nimport { searchMMR } from './mmr.ts';\n\nexport interface SearchConfig {\n    db: Database;\n    codeHnsw?: HNSWIndex;\n    gitHnsw?: HNSWIndex;\n    patternHnsw?: HNSWIndex;\n    codeVecs: Map<number, Float32Array>;\n    gitVecs: Map<number, Float32Array>;\n    patternVecs: Map<number, Float32Array>;\n    embedding: EmbeddingProvider;\n    reranker?: Reranker;\n}\n\nexport interface SearchOptions {\n    /** Max code results. Default: 6 */\n    codeK?: number;\n    /** Max git results. Default: 5 */\n    gitK?: number;\n    /** Max pattern results. Default: 4 */\n    patternK?: number;\n    /** Minimum similarity score. Default: 0.25 */\n    minScore?: number;\n    /** Use MMR for diversity. Default: true */\n    useMMR?: boolean;\n    /** MMR lambda. Default: 0.7 */\n    mmrLambda?: number;\n}\n\nexport class MultiIndexSearch {\n    private _config: SearchConfig;\n\n    constructor(config: SearchConfig) {\n        this._config = config;\n    }\n\n    /**\n     * Search across all indices.\n     * Returns combined results sorted by score.\n     */\n    async search(query: string, options: SearchOptions = {}): Promise<SearchResult[]> {\n        const {\n            codeK = 6,\n            gitK = 5,\n            patternK = 4,\n            minScore = 0.25,\n            useMMR = true,\n            mmrLambda = 0.7,\n        } = options;\n\n        const queryVec = await this._config.embedding.embed(query);\n        const results: SearchResult[] = [];\n\n        // ── Code search ────────────────────────────\n        if (this._config.codeHnsw && this._config.codeHnsw.size > 0) {\n            const hits = useMMR\n                ? searchMMR(this._config.codeHnsw, queryVec, this._config.codeVecs, codeK, mmrLambda)\n                : this._config.codeHnsw.search(queryVec, codeK);\n\n            if (hits.length > 0) {\n                const ids = hits.map(h => h.id);\n                const scoreMap = new Map(hits.map(h => [h.id, h.score]));\n                const placeholders = ids.map(() => '?').join(',');\n\n                const rows = this._config.db.prepare(\n                    `SELECT * FROM code_chunks WHERE id IN (${placeholders})`\n                ).all(...ids) as any[];\n\n                for (const r of rows) {\n                    const score = scoreMap.get(r.id) ?? 0;\n                    if (score >= minScore) {\n                        results.push({\n                            type: 'code',\n                            score,\n                            filePath: r.file_path,\n                            content: r.content,\n                            metadata: {\n                                chunkType: r.chunk_type,\n                                name: r.name,\n                                startLine: r.start_line,\n                                endLine: r.end_line,\n                                language: r.language,\n                            },\n                        });\n                    }\n                }\n            }\n        }\n\n        // ── Git search ─────────────────────────────\n        if (this._config.gitHnsw && this._config.gitHnsw.size > 0) {\n            const hits = this._config.gitHnsw.search(queryVec, gitK * 2);\n\n            if (hits.length > 0) {\n                const ids = hits.map(h => h.id);\n                const scoreMap = new Map(hits.map(h => [h.id, h.score]));\n                const placeholders = ids.map(() => '?').join(',');\n\n                const rows = this._config.db.prepare(\n                    `SELECT * FROM git_commits WHERE id IN (${placeholders}) AND is_merge = 0`\n                ).all(...ids) as any[];\n\n                for (const r of rows) {\n                    const score = scoreMap.get(r.id) ?? 0;\n                    if (score >= minScore) {\n                        results.push({\n                            type: 'commit',\n                            score,\n                            content: r.message,\n                            metadata: {\n                                hash: r.hash,\n                                shortHash: r.short_hash,\n                                author: r.author,\n                                date: r.date,\n                                files: JSON.parse(r.files_json ?? '[]'),\n                                additions: r.additions,\n                                deletions: r.deletions,\n                                diff: r.diff,\n                            },\n                        });\n                    }\n                }\n            }\n        }\n\n        // ── Pattern search ──────────────────────────\n        if (this._config.patternHnsw && this._config.patternHnsw.size > 0) {\n            const hits = useMMR\n                ? searchMMR(this._config.patternHnsw, queryVec, this._config.patternVecs, patternK, mmrLambda)\n                : this._config.patternHnsw.search(queryVec, patternK);\n\n            if (hits.length > 0) {\n                const ids = hits.map(h => h.id);\n                const scoreMap = new Map(hits.map(h => [h.id, h.score]));\n                const placeholders = ids.map(() => '?').join(',');\n\n                const rows = this._config.db.prepare(\n                    `SELECT * FROM memory_patterns WHERE id IN (${placeholders}) AND success_rate >= 0.5`\n                ).all(...ids) as any[];\n\n                for (const r of rows) {\n                    const score = scoreMap.get(r.id) ?? 0;\n                    if (score >= minScore) {\n                        results.push({\n                            type: 'pattern',\n                            score,\n                            content: r.approach,\n                            metadata: {\n                                taskType: r.task_type,\n                                task: r.task,\n                                outcome: r.outcome,\n                                successRate: r.success_rate,\n                                critique: r.critique,\n                            },\n                        });\n                    }\n                }\n            }\n        }\n\n        // Sort by score descending\n        results.sort((a, b) => b.score - a.score);\n\n        // Apply re-ranking if available\n        if (this._config.reranker && results.length > 1) {\n            return this._rerank(query, results);\n        }\n\n        return results;\n    }\n\n    /**\n     * Re-rank results using position-aware blending.\n     * \n     * Top 1-3:  75% retrieval / 25% reranker (preserves exact matches)\n     * Top 4-10: 60% retrieval / 40% reranker\n     * Top 11+:  40% retrieval / 60% reranker (trust reranker more)\n     */\n    private async _rerank(query: string, results: SearchResult[]): Promise<SearchResult[]> {\n        const reranker = this._config.reranker!;\n        const documents = results.map(r => r.content);\n        const scores = await reranker.rank(query, documents);\n\n        const blended = results.map((r, i) => {\n            const pos = i + 1;\n            const rrfWeight = pos <= 3 ? 0.75 : pos <= 10 ? 0.60 : 0.40;\n            return {\n                ...r,\n                score: rrfWeight * r.score + (1 - rrfWeight) * (scores[i] ?? 0),\n            };\n        });\n\n        return blended.sort((a, b) => b.score - a.score);\n    }\n}\n","/**\n * BrainBank — BM25 Full-Text Search\n * \n * Keyword search via SQLite FTS5 with BM25 ranking.\n * Searches across code chunks, git commits, and memory patterns.\n * Uses Porter stemming + unicode61 tokenizer.\n */\n\nimport type { Database } from '../../db/database.ts';\nimport type { SearchResult } from '../../types.ts';\nimport { sanitizeFTS, normalizeBM25 } from './utils.ts';\n\nexport interface BM25Options {\n    /** Max code results. Default: 8 */\n    codeK?: number;\n    /** Max git results. Default: 5 */\n    gitK?: number;\n    /** Max pattern results. Default: 4 */\n    patternK?: number;\n}\n\nexport class BM25Search {\n    constructor(private _db: Database) {}\n\n    /**\n     * Full-text keyword search across all FTS5 indices.\n     * Uses BM25 scoring — lower scores = better matches.\n     * Query syntax: simple words, OR, NOT, \"exact phrases\", prefix*\n     */\n    search(query: string, options: BM25Options = {}): SearchResult[] {\n        const { codeK = 8, gitK = 5, patternK = 4 } = options;\n        const results: SearchResult[] = [];\n\n        const ftsQuery = sanitizeFTS(query);\n        if (!ftsQuery) return [];\n\n        // ── Code search ────────────────────────────\n        const seenIds = new Set<number>();\n        if (codeK > 0) {\n            try {\n                const rows = this._db.prepare(`\n                    SELECT c.id, c.file_path, c.chunk_type, c.name, c.start_line, c.end_line,\n                           c.content, c.language, bm25(fts_code, 5.0, 3.0, 1.0) AS score\n                    FROM fts_code f\n                    JOIN code_chunks c ON c.id = f.rowid\n                    WHERE fts_code MATCH ?\n                    ORDER BY score ASC\n                    LIMIT ?\n                `).all(ftsQuery, codeK) as any[];\n\n                for (const r of rows) {\n                    seenIds.add(r.id);\n                    results.push({\n                        type: 'code',\n                        score: normalizeBM25(r.score),\n                        filePath: r.file_path,\n                        content: r.content,\n                        metadata: {\n                            chunkType: r.chunk_type,\n                            name: r.name,\n                            startLine: r.start_line,\n                            endLine: r.end_line,\n                            language: r.language,\n                            searchType: 'bm25',\n                        },\n                    });\n                }\n            } catch {}\n\n            // ── File-path fallback: match filenames via LIKE ──\n            try {\n                const words = query.replace(/[^a-zA-Z0-9]/g, ' ').split(/\\s+/).filter(w => w.length > 2);\n                for (const word of words.slice(0, 3)) {\n                    const pathRows = this._db.prepare(`\n                        SELECT id, file_path, chunk_type, name, start_line, end_line, content, language\n                        FROM code_chunks\n                        WHERE file_path LIKE ? AND chunk_type = 'file'\n                        LIMIT 3\n                    `).all(`%${word}%`) as any[];\n\n                    for (const r of pathRows) {\n                        if (seenIds.has(r.id)) continue;\n                        seenIds.add(r.id);\n                        results.push({\n                            type: 'code',\n                            score: 0.6,\n                            filePath: r.file_path,\n                            content: r.content,\n                            metadata: {\n                                chunkType: r.chunk_type,\n                                name: r.name,\n                                startLine: r.start_line,\n                                endLine: r.end_line,\n                                language: r.language,\n                                searchType: 'bm25-path',\n                            },\n                        });\n                    }\n                }\n            } catch {}\n        }\n\n        // ── Git search ─────────────────────────────\n        if (gitK > 0) {\n            try {\n                const rows = this._db.prepare(`\n                    SELECT c.id, c.hash, c.short_hash, c.message, c.author, c.date,\n                           c.files_json, c.diff, c.additions, c.deletions,\n                           bm25(fts_commits, 5.0, 2.0, 1.0) AS score\n                    FROM fts_commits f\n                    JOIN git_commits c ON c.id = f.rowid\n                    WHERE fts_commits MATCH ? AND c.is_merge = 0\n                    ORDER BY score ASC\n                    LIMIT ?\n                `).all(ftsQuery, gitK) as any[];\n\n                for (const r of rows) {\n                    results.push({\n                        type: 'commit',\n                        score: normalizeBM25(r.score),\n                        content: r.message,\n                        metadata: {\n                            hash: r.hash,\n                            shortHash: r.short_hash,\n                            author: r.author,\n                            date: r.date,\n                            files: JSON.parse(r.files_json ?? '[]'),\n                            additions: r.additions,\n                            deletions: r.deletions,\n                            diff: r.diff,\n                            searchType: 'bm25',\n                        },\n                    });\n                }\n            } catch {}\n        }\n\n        // ── Pattern search ──────────────────────────\n        if (patternK > 0) {\n            try {\n                const rows = this._db.prepare(`\n                    SELECT p.id, p.task_type, p.task, p.approach, p.outcome,\n                           p.success_rate, p.critique,\n                           bm25(fts_patterns, 3.0, 5.0, 5.0, 1.0) AS score\n                    FROM fts_patterns f\n                    JOIN memory_patterns p ON p.id = f.rowid\n                    WHERE fts_patterns MATCH ? AND p.success_rate >= 0.5\n                    ORDER BY score ASC\n                    LIMIT ?\n                `).all(ftsQuery, patternK) as any[];\n\n                for (const r of rows) {\n                    results.push({\n                        type: 'pattern',\n                        score: normalizeBM25(r.score),\n                        content: r.approach,\n                        metadata: {\n                            taskType: r.task_type,\n                            task: r.task,\n                            outcome: r.outcome,\n                            successRate: r.success_rate,\n                            critique: r.critique,\n                            searchType: 'bm25',\n                        },\n                    });\n                }\n            } catch {}\n        }\n\n        return results.sort((a, b) => b.score - a.score);\n    }\n\n    /**\n     * Rebuild the FTS index from scratch.\n     * Call this after bulk imports or if FTS gets out of sync.\n     */\n    rebuild(): void {\n        try {\n            this._db.prepare(\"INSERT INTO fts_code(fts_code) VALUES('rebuild')\").run();\n            this._db.prepare(\"INSERT INTO fts_commits(fts_commits) VALUES('rebuild')\").run();\n            this._db.prepare(\"INSERT INTO fts_patterns(fts_patterns) VALUES('rebuild')\").run();\n        } catch {}\n    }\n\n}\n","/**\n * BrainBank — Context Builder\n * \n * Builds a formatted markdown context block from search results.\n * Ready for injection into an LLM system prompt.\n * Groups code by file, includes git history and learned patterns.\n */\n\nimport type { SearchResult, CoEditSuggestion, ContextOptions } from '../types.ts';\nimport type { MultiIndexSearch } from '../search/vector/multi-index.ts';\nimport type { CoEditAnalyzer } from '../indexers/git/co-edit-analyzer.ts';\n\nexport class ContextBuilder {\n    constructor(\n        private _search: MultiIndexSearch,\n        private _coEdits?: CoEditAnalyzer,\n    ) {}\n\n    /**\n     * Build a full context block for a task.\n     * Returns clean markdown ready for system prompt injection.\n     */\n    async build(task: string, options: ContextOptions = {}): Promise<string> {\n        const {\n            codeResults = 6,\n            gitResults = 5,\n            patternResults = 4,\n            affectedFiles = [],\n            minScore = 0.25,\n            useMMR = true,\n            mmrLambda = 0.7,\n        } = options;\n\n        // Run unified search\n        const results = await this._search.search(task, {\n            codeK: codeResults,\n            gitK: gitResults,\n            patternK: patternResults,\n            minScore,\n            useMMR,\n            mmrLambda,\n        });\n\n        const parts: string[] = [`# Context for: \"${task}\"\\n`];\n\n        // ── Code Results ────────────────────────────\n        const codeHits = results.filter(r => r.type === 'code').slice(0, codeResults);\n        if (codeHits.length > 0) {\n            parts.push('## Relevant Code\\n');\n\n            // Group by file\n            const byFile = new Map<string, typeof codeHits>();\n            for (const r of codeHits) {\n                const key = r.filePath ?? 'unknown';\n                if (!byFile.has(key)) byFile.set(key, []);\n                byFile.get(key)!.push(r);\n            }\n\n            for (const [file, chunks] of byFile) {\n                parts.push(`### ${file}`);\n                for (const c of chunks) {\n                    const m = c.metadata;\n                    const label = m.name\n                        ? `${m.chunkType} \\`${m.name}\\` (L${m.startLine}-${m.endLine})`\n                        : `L${m.startLine}-${m.endLine}`;\n                    parts.push(`**${label}** — ${Math.round(c.score * 100)}% match`);\n                    parts.push('```' + (m.language || ''));\n                    parts.push(c.content);\n                    parts.push('```\\n');\n                }\n            }\n        }\n\n        // ── Git Results ─────────────────────────────\n        const gitHits = results.filter(r => r.type === 'commit').slice(0, gitResults);\n        if (gitHits.length > 0) {\n            parts.push('## Related Git History\\n');\n            for (const c of gitHits) {\n                const m = c.metadata;\n                const score = Math.round(c.score * 100);\n                const files = (m.files ?? []).slice(0, 4).join(', ');\n                parts.push(`**[${m.shortHash}]** ${c.content} *(${m.author}, ${m.date?.slice(0, 10)}, ${score}%)*`);\n                if (files) parts.push(`  Files: ${files}`);\n                if (m.diff) {\n                    const snippet = m.diff\n                        .split('\\n')\n                        .filter((l: string) => l.startsWith('+') || l.startsWith('-') || l.startsWith('@@'))\n                        .slice(0, 10)\n                        .join('\\n');\n                    if (snippet) {\n                        parts.push('```diff');\n                        parts.push(snippet);\n                        parts.push('```');\n                    }\n                }\n                parts.push('');\n            }\n        }\n\n        // ── Co-Edits ────────────────────────────────\n        if (affectedFiles.length > 0 && this._coEdits) {\n            const coEditLines: string[] = [];\n            for (const file of affectedFiles.slice(0, 3)) {\n                const suggestions = this._coEdits.suggest(file, 4);\n                if (suggestions.length > 0) {\n                    coEditLines.push(\n                        `- **${file}** → also tends to change: ${suggestions.map(s => `${s.file} (${s.count}x)`).join(', ')}`\n                    );\n                }\n            }\n            if (coEditLines.length > 0) {\n                parts.push('## Co-Edit Patterns\\n');\n                parts.push(...coEditLines);\n                parts.push('');\n            }\n        }\n\n        // ── Memory Results ──────────────────────────\n        const memHits = results.filter(r => r.type === 'pattern').slice(0, patternResults);\n        if (memHits.length > 0) {\n            parts.push('## Learned Patterns\\n');\n            for (const p of memHits) {\n                const m = p.metadata;\n                const score = Math.round(p.score * 100);\n                const success = Math.round((m.successRate ?? 0) * 100);\n                parts.push(`**${m.taskType}** — ${success}% success, ${score}% match`);\n                parts.push(`Task: ${m.task}`);\n                parts.push(`Approach: ${p.content}`);\n                if (m.critique) parts.push(`Lesson: ${m.critique}`);\n                parts.push('');\n            }\n        }\n\n        return parts.join('\\n');\n    }\n}\n","/**\n * BrainBank — Main Orchestrator\n *\n * Thin facade that composes four services:\n *   IndexerRegistry  — registration + lookup\n *   Initializer      — two-phase startup (earlyInit / lateInit)\n *   SearchAPI        — all search + context logic\n *   IndexAPI         — code / git / docs indexing orchestration\n *\n * All heavy logic lives in those modules; BrainBank owns state,\n * guards (requireInit / initialize()), and public API shape.\n */\n\nimport { EventEmitter } from 'node:events';\nimport { resolveConfig } from '../config/defaults.ts';\nimport { Database } from '../db/database.ts';\nimport { HNSWIndex } from '../providers/vector/hnsw.ts';\nimport { Collection } from './collection.ts';\nimport { IndexerRegistry } from './registry.ts';\nimport { earlyInit, lateInit } from './initializer.ts';\nimport { SearchAPI } from './search-api.ts';\nimport { IndexAPI } from './index-api.ts';\nimport { reembedAll } from '../services/reembed.ts';\nimport { createWatcher, type WatchOptions, type Watcher } from '../services/watch.ts';\nimport type { ReembedResult, ReembedOptions } from '../services/reembed.ts';\nimport type { Indexer } from '../indexers/base.ts';\nimport type {\n    BrainBankConfig, ResolvedConfig, EmbeddingProvider,\n    IndexResult, IndexStats, SearchResult,\n    ContextOptions, CoEditSuggestion, ProgressCallback, StageProgressCallback,\n    DocumentCollection,\n} from '../types.ts';\n\nexport class BrainBank extends EventEmitter {\n    // ── State ───────────────────────────────────────\n    private _config: ResolvedConfig;\n    private _db!: Database;\n    private _embedding!: EmbeddingProvider;\n    private _registry   = new IndexerRegistry();\n    private _searchAPI?: SearchAPI;\n    private _indexAPI?:  IndexAPI;\n    private _initialized  = false;\n    private _initPromise: Promise<void> | null = null;\n    private _watcher?: Watcher;\n\n    // Collections (KV store)\n    private _collections = new Map<string, Collection>();\n    private _kvHnsw?: HNSWIndex;\n    private _kvVecs   = new Map<number, Float32Array>();\n\n    // Shared HNSW pool — code:frontend + code:backend share one index\n    private _sharedHnsw = new Map<string, { hnsw: HNSWIndex; vecCache: Map<number, Float32Array> }>();\n\n    constructor(config: BrainBankConfig = {}) {\n        super();\n        this._config = resolveConfig(config);\n    }\n\n    // ── Indexer registration ─────────────────────────\n\n    /**\n     * Register an indexer. Chainable.\n     *\n     *   brain.use(code({ repoPath: '.' })).use(docs());\n     */\n    use(indexer: Indexer): this {\n        if (this._initialized)\n            throw new Error(`BrainBank: Cannot add indexer '${indexer.name}' after initialization. Call .use() before any operations.`);\n        this._registry.register(indexer);\n        return this;\n    }\n\n    /** Get the list of registered indexer names. */\n    get indexers(): string[]                   { return this._registry.names; }\n\n    /** Check if an indexer is loaded. Also matches type prefix (e.g. 'code' matches 'code:frontend'). */\n    has(name: string): boolean                 { return this._registry.has(name); }\n\n    /** Get an indexer instance. Throws if not loaded. */\n    indexer<T extends Indexer = Indexer>(n: string): T { return this._registry.get<T>(n); }\n\n    // ── Initialization ───────────────────────────────\n\n    /**\n     * Initialize database, HNSW indices, and load existing vectors.\n     * Only initializes registered modules.\n     * Automatically called by index/search methods if not yet initialized.\n     */\n    async initialize(): Promise<void> {\n        if (this._initialized) return;\n        if (this._initPromise) return this._initPromise;\n\n        this._initPromise = this._runInitialize()\n            .catch(err => {\n                // Reset shared state so a retry starts clean\n                for (const { hnsw } of this._sharedHnsw.values()) try { hnsw.reinit(); } catch {}\n                this._kvVecs.clear();\n                if (this._kvHnsw) try { this._kvHnsw.reinit(); } catch {}\n                try { this._db?.close(); } catch {}\n                this._db        = undefined as any;\n                this._kvHnsw    = undefined as any;\n                this._searchAPI = undefined;\n                this._indexAPI  = undefined;\n                throw err;\n            })\n            .finally(() => { this._initPromise = null; });\n\n        return this._initPromise;\n    }\n\n    private async _runInitialize(): Promise<void> {\n        if (this._initialized) return;\n\n        // Phase 1: set this._kvHnsw BEFORE phase 2 so collection() works\n        // when indexers call ctx.collection() during their initialize()\n        const early = await earlyInit(this._config, (e, d) => this.emit(e, d));\n        this._db        = early.db;\n        this._embedding = early.embedding;\n        this._kvHnsw    = early.kvHnsw;\n\n        // Phase 2: load vectors, run indexers, build search services\n        const late = await lateInit(\n            early,\n            this._config,\n            this._registry,\n            this._sharedHnsw,\n            this._kvVecs,\n            (name) => this.collection(name),\n        );\n\n        this._searchAPI = new SearchAPI({\n            ...late,\n            registry:   this._registry,\n            config:     this._config,\n            searchDocs: (q, o) => this.searchDocs(q, o),\n            collection: (n)    => this.collection(n),\n        });\n\n        this._indexAPI = new IndexAPI({\n            registry: this._registry,\n            gitDepth: this._config.gitDepth,\n            emit:     (e, d) => this.emit(e, d),\n        });\n\n        this._initialized = true;\n        this.emit('initialized', { indexers: this.indexers });\n    }\n\n    // ── Collections (KV) ────────────────────────────\n\n    /**\n     * Get or create a dynamic collection.\n     * Collections are the universal data primitive — store anything, search semantically.\n     *\n     *   const errors = brain.collection('debug_errors');\n     *   await errors.add('Fixed null check', { file: 'api.ts' });\n     *   const hits = await errors.search('null pointer');\n     */\n    collection(name: string): Collection {\n        if (this._collections.has(name)) return this._collections.get(name)!;\n        if (!this._kvHnsw)\n            throw new Error('BrainBank: Collections not ready. Call await brain.initialize() first.');\n        const coll = new Collection(name, this._db, this._embedding, this._kvHnsw, this._kvVecs, this._config.reranker);\n        this._collections.set(name, coll);\n        return coll;\n    }\n\n    /** List all collection names that have data. */\n    listCollectionNames(): string[] {\n        this._requireInit('listCollectionNames');\n        return (this._db.prepare('SELECT DISTINCT collection FROM kv_data ORDER BY collection').all() as any[])\n            .map(r => r.collection);\n    }\n\n    // ── Indexing (delegated to IndexAPI) ─────────────\n\n    async index(options: {\n        modules?: ('code' | 'git' | 'docs')[];\n        gitDepth?: number; forceReindex?: boolean; onProgress?: StageProgressCallback;\n    } = {}): Promise<{ code?: IndexResult; git?: IndexResult; docs?: Record<string, { indexed: number; skipped: number; chunks: number }> }> {\n        await this.initialize();\n        return this._indexAPI!.index(options);\n    }\n\n    /** Index only code files (all repos in multi-repo mode). */\n    async indexCode(options: { forceReindex?: boolean; onProgress?: ProgressCallback } = {}): Promise<IndexResult> {\n        await this.initialize();\n        return this._indexAPI!.indexCode(options);\n    }\n\n    /** Index only git history (all repos in multi-repo mode). */\n    async indexGit(options: { depth?: number; onProgress?: ProgressCallback } = {}): Promise<IndexResult> {\n        await this.initialize();\n        return this._indexAPI!.indexGit(options);\n    }\n\n    // ── Document collections ─────────────────────────\n\n    /** Register a document collection. */\n    async addCollection(collection: DocumentCollection): Promise<void> {\n        await this.initialize();\n        this.indexer('docs').addCollection!(collection);\n    }\n\n    /** Remove a collection and all its indexed data. */\n    async removeCollection(name: string): Promise<void> {\n        await this.initialize();\n        this.indexer('docs').removeCollection!(name);\n    }\n\n    /** List all registered collections. */\n    listCollections(): DocumentCollection[] {\n        this._requireInit('listCollections');\n        return this.indexer('docs').listCollections!();\n    }\n\n    /** Index all (or specific) document collections. */\n    async indexDocs(options: {\n        collections?: string[];\n        onProgress?: (collection: string, file: string, current: number, total: number) => void;\n    } = {}): Promise<Record<string, { indexed: number; skipped: number; chunks: number }>> {\n        await this.initialize();\n        const results = await this.indexer('docs').indexCollections!(options);\n        this.emit('docsIndexed', results);\n        return results;\n    }\n\n    /** Search documents only. */\n    async searchDocs(query: string, options?: { collection?: string; k?: number; minScore?: number }): Promise<SearchResult[]> {\n        await this.initialize();\n        return this.indexer('docs').search!(query, options);\n    }\n\n    // ── Context metadata ─────────────────────────────\n\n    /** Add context description for a collection path. */\n    addContext(collection: string, path: string, context: string): void {\n        this.indexer('docs').addContext!(collection, path, context);\n    }\n\n    /** Remove context for a collection path. */\n    removeContext(collection: string, path: string): void {\n        this.indexer('docs').removeContext!(collection, path);\n    }\n\n    /** List all context entries. */\n    listContexts(): { collection: string; path: string; context: string }[] {\n        return this.indexer('docs').listContexts!();\n    }\n\n    // ── Search (delegated to SearchAPI) ─────────────\n\n    /**\n     * Get formatted context for a task.\n     * Returns markdown ready for system prompt injection.\n     */\n    async getContext(task: string, options: ContextOptions = {}): Promise<string> {\n        await this.initialize();\n        return this._searchAPI!.getContext(task, options);\n    }\n\n    /** Semantic search across all loaded modules. */\n    async search(query: string, options?: {\n        codeK?: number; gitK?: number; patternK?: number;\n        minScore?: number; useMMR?: boolean;\n    }): Promise<SearchResult[]> {\n        await this.initialize();\n        return this._searchAPI!.search(query, options);\n    }\n\n    /** Semantic search over code only. */\n    async searchCode(query: string, k = 8): Promise<SearchResult[]> {\n        await this.initialize();\n        return this._searchAPI!.searchCode(query, k);\n    }\n\n    /** Semantic search over commits only. */\n    async searchCommits(query: string, k = 8): Promise<SearchResult[]> {\n        await this.initialize();\n        return this._searchAPI!.searchCommits(query, k);\n    }\n\n    /**\n     * Hybrid search: vector + BM25 fused with Reciprocal Rank Fusion.\n     * Best quality — catches both exact keyword matches and conceptual similarities.\n     */\n    async hybridSearch(query: string, options?: {\n        codeK?: number; gitK?: number; patternK?: number;\n        minScore?: number; useMMR?: boolean;\n        collections?: Record<string, number>;\n    }): Promise<SearchResult[]> {\n        await this.initialize();\n        return this._searchAPI!.hybridSearch(query, options);\n    }\n\n    /** BM25 keyword search only (no embeddings needed). */\n    searchBM25(query: string, options?: { codeK?: number; gitK?: number; patternK?: number }): SearchResult[] {\n        this._requireInit('searchBM25');\n        return this._searchAPI!.searchBM25(query, options);\n    }\n\n    /** Rebuild FTS5 indices. */\n    rebuildFTS(): void {\n        this._requireInit('rebuildFTS');\n        this._searchAPI!.rebuildFTS();\n    }\n\n    // ── Queries ──────────────────────────────────────\n\n    /** Get git history for a specific file. */\n    async fileHistory(filePath: string, limit = 20): Promise<any[]> {\n        this.indexer('git'); // throws if not loaded\n        await this.initialize();\n        return this._db.prepare(`\n            SELECT c.short_hash, c.message, c.author, c.date, c.additions, c.deletions\n            FROM git_commits c\n            INNER JOIN commit_files cf ON c.id = cf.commit_id\n            WHERE cf.file_path LIKE ? AND c.is_merge = 0\n            ORDER BY c.timestamp DESC LIMIT ?\n        `).all(`%${filePath}%`, limit) as any[];\n    }\n\n    /** Get co-edit suggestions for a file. */\n    coEdits(filePath: string, limit = 5): CoEditSuggestion[] {\n        this._requireInit('coEdits');\n        return (this.indexer('git') as any).suggestCoEdits(filePath, limit);\n    }\n\n    // ── Stats ────────────────────────────────────────\n\n    /** Get statistics for all loaded modules. */\n    stats(): IndexStats {\n        this._requireInit('stats');\n        const result: IndexStats = {};\n\n        if (this.has('code')) {\n            const sh = this._sharedHnsw.get('code');\n            result.code = {\n                files:    (this._db.prepare('SELECT COUNT(DISTINCT file_path) as c FROM code_chunks').get() as any).c,\n                chunks:   (this._db.prepare('SELECT COUNT(*) as c FROM code_chunks').get() as any).c,\n                hnswSize: sh?.hnsw.size ?? 0,\n            };\n        }\n\n        if (this.has('git')) {\n            const sh = this._sharedHnsw.get('git');\n            result.git = {\n                commits:      (this._db.prepare('SELECT COUNT(*) as c FROM git_commits').get() as any).c,\n                filesTracked: (this._db.prepare('SELECT COUNT(DISTINCT file_path) as c FROM commit_files').get() as any).c,\n                coEdits:      (this._db.prepare('SELECT COUNT(*) as c FROM co_edits').get() as any).c,\n                hnswSize:     sh?.hnsw.size ?? 0,\n            };\n        }\n\n        if (this.has('docs')) {\n            result.documents = (this.indexer('docs') as any).stats();\n        }\n\n        return result;\n    }\n\n    // ── Watch ────────────────────────────────────────\n\n    /**\n     * Start watching for file changes and auto-re-index.\n     * Works with built-in and custom indexers.\n     */\n    watch(options: WatchOptions = {}): Watcher {\n        this._requireInit('watch');\n        this._watcher?.close();\n        this._watcher = createWatcher(\n            async () => { await this.index(); },\n            this._registry.raw,\n            this._config.repoPath,\n            options,\n        );\n        return this._watcher;\n    }\n\n    // ── Re-embed ─────────────────────────────────────\n\n    /**\n     * Re-embed all existing text with the current embedding provider.\n     * Use this when switching providers (e.g. Local → OpenAI).\n     */\n    async reembed(options: ReembedOptions = {}): Promise<ReembedResult> {\n        this._requireInit('reembed');\n\n        const hnswMap = new Map<string, { hnsw: HNSWIndex; vecs: Map<number, Float32Array> }>();\n\n        if (this._kvHnsw) hnswMap.set('kv', { hnsw: this._kvHnsw, vecs: this._kvVecs });\n\n        for (const [type, shared] of this._sharedHnsw) {\n            hnswMap.set(type, { hnsw: shared.hnsw, vecs: shared.vecCache });\n        }\n\n        for (const type of ['memory', 'notes', 'docs'] as const) {\n            const mod = this._registry.firstByType(type) as any;\n            if (mod?.hnsw) hnswMap.set(type, { hnsw: mod.hnsw, vecs: mod.vecCache });\n        }\n\n        const result = await reembedAll(this._db, this._embedding, hnswMap, options);\n        this.emit('reembedded', result);\n        return result;\n    }\n\n    // ── Lifecycle ────────────────────────────────────\n\n    /** Close database and release resources. */\n    close(): void {\n        this._watcher?.close();\n        for (const indexer of this._registry.all) indexer.close?.();\n        this._db?.close();\n        this._initialized = false;\n        this._collections.clear();\n        this._sharedHnsw.clear();\n        this._kvVecs.clear();\n        this._kvHnsw    = undefined as any;\n        this._searchAPI = undefined;\n        this._indexAPI  = undefined;\n        this._registry.clear();\n    }\n\n    /** Whether the brainbank has been initialized. */\n    get isInitialized(): boolean            { return this._initialized; }\n\n    /** The resolved configuration. */\n    get config(): Readonly<ResolvedConfig>  { return this._config; }\n\n    // ── Internal guard ───────────────────────────────\n\n    private _requireInit(method: string): void {\n        if (!this._initialized)\n            throw new Error(`BrainBank: Not initialized. Call await brain.initialize() before ${method}().`);\n    }\n}\n","/**\n * BrainBank — Indexer Registry\n *\n * Manages registration and lookup of indexers.\n * Extracted from BrainBank so the facade stays focused on orchestration.\n *\n * Responsibilities:\n *   - Store indexers by name\n *   - Type-prefix matching  ('code' finds 'code:frontend', 'code:backend')\n *   - Alias resolution      (currently none; add here if needed)\n *   - Consistent error messages on missing indexers\n */\n\nimport type { Indexer } from '../indexers/base.ts';\n\n/** Shorthand aliases that map public names to canonical indexer names. */\nconst ALIASES: Readonly<Record<string, string>> = {\n};\n\nexport class IndexerRegistry {\n    private _map = new Map<string, Indexer>();\n\n    // ── Registration ────────────────────────────────\n\n    /** Store an indexer. Duplicate names silently overwrite. */\n    register(indexer: Indexer): void {\n        this._map.set(indexer.name, indexer);\n    }\n\n    // ── Lookup ──────────────────────────────────────\n\n    /**\n     * Check whether an indexer is registered.\n     * Supports type-prefix matching: `has('code')` returns true if\n     * 'code', 'code:frontend', or 'code:backend' is registered.\n     */\n    has(name: string): boolean {\n        if (this._map.has(name)) return true;\n        for (const key of this._map.keys()) {\n            if (key.startsWith(name + ':')) return true;\n        }\n        return false;\n    }\n\n    /**\n     * Get an indexer by name.  Throws a descriptive error if not found.\n     *\n     * Resolution order:\n     *   1. Alias map   (currently empty)\n     *   2. Exact match\n     *   3. First type-prefix match  ('code' → 'code:frontend')\n     */\n    get<T extends Indexer = Indexer>(name: string): T {\n        const resolved = ALIASES[name] ?? name;\n\n        const exact = this._map.get(resolved);\n        if (exact) return exact as T;\n\n        const prefixed = this.firstByType(name);\n        if (prefixed) return prefixed as T;\n\n        throw new Error(\n            `BrainBank: Indexer '${name}' is not loaded. ` +\n            `Add .use(${name}()) to your BrainBank instance.`,\n        );\n    }\n\n    /**\n     * Return every indexer whose name equals `type` or starts with `type + ':'`.\n     * Example: allByType('code') → [code, code:frontend, code:backend]\n     */\n    allByType(type: string): Indexer[] {\n        return [...this._map.values()].filter(\n            m => m.name === type || m.name.startsWith(type + ':'),\n        );\n    }\n\n    /** Return the first indexer that matches the type prefix, or undefined. */\n    firstByType(type: string): Indexer | undefined {\n        for (const m of this._map.values()) {\n            if (m.name === type || m.name.startsWith(type + ':')) return m;\n        }\n        return undefined;\n    }\n\n    // ── Accessors ───────────────────────────────────\n\n    /** All registered indexer names (insertion order). */\n    get names(): string[] {\n        return [...this._map.keys()];\n    }\n\n    /** All registered indexer instances (insertion order). */\n    get all(): Indexer[] {\n        return [...this._map.values()];\n    }\n\n    /**\n     * Underlying Map.\n     * Prefer `all`, `allByType`, or `firstByType` everywhere else.\n     */\n    get raw(): Map<string, Indexer> {\n        return this._map;\n    }\n\n    // ── Lifecycle ───────────────────────────────────\n\n    /** Remove all registered indexers. Called by BrainBank.close(). */\n    clear(): void {\n        this._map.clear();\n    }\n}\n","/**\n * BrainBank — Database\n * \n * Thin wrapper over better-sqlite3.\n * Handles WAL mode, directory creation, schema init, and transactions.\n */\n\nimport BetterSqlite3 from 'better-sqlite3';\nimport * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport { createSchema } from './schema.ts';\n\nexport class Database {\n    readonly db: BetterSqlite3.Database;\n\n    constructor(dbPath: string) {\n        // Ensure parent directory exists\n        const dir = path.dirname(dbPath);\n        if (!fs.existsSync(dir)) {\n            fs.mkdirSync(dir, { recursive: true });\n        }\n\n        this.db = new BetterSqlite3(dbPath);\n        this.db.pragma('journal_mode = WAL');\n        this.db.pragma('synchronous = NORMAL');\n        this.db.pragma('foreign_keys = ON');\n\n        // Initialize schema\n        createSchema(this.db);\n    }\n\n    /**\n     * Run a function inside a transaction.\n     * Auto-commits on success, auto-rollbacks on error.\n     */\n    transaction<T>(fn: () => T): T {\n        const tx = this.db.transaction(fn);\n        return tx();\n    }\n\n    /**\n     * Run a prepared statement on multiple rows.\n     * Wraps in a single transaction for performance.\n     */\n    batch<T extends any[]>(sql: string, rows: T[]): void {\n        const stmt = this.db.prepare(sql);\n        const tx = this.db.transaction(() => {\n            for (const row of rows) {\n                stmt.run(...row);\n            }\n        });\n        tx();\n    }\n\n    /** Prepare a reusable statement. */\n    prepare(sql: string): BetterSqlite3.Statement {\n        return this.db.prepare(sql);\n    }\n\n    /** Execute raw SQL (no results). */\n    exec(sql: string): void {\n        this.db.exec(sql);\n    }\n\n    /** Close the database. */\n    close(): void {\n        this.db.close();\n    }\n}\n","/**\n * BrainBank — SQLite Schema\n * \n * Idempotent schema creation for the knowledge database.\n * Uses better-sqlite3 directly.\n */\n\nimport type Database from 'better-sqlite3';\n\nexport const SCHEMA_VERSION = 4;\n\n/**\n * Create all tables and indices.\n * Safe to call multiple times — uses IF NOT EXISTS.\n */\nexport function createSchema(db: Database.Database): void {\n    db.exec(`\n        -- ── Schema versioning ──────────────────────────\n        CREATE TABLE IF NOT EXISTS schema_version (\n            version     INTEGER PRIMARY KEY,\n            applied_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n        INSERT OR IGNORE INTO schema_version (version) VALUES (${SCHEMA_VERSION});\n\n        -- ── Code chunks ────────────────────────────────\n        CREATE TABLE IF NOT EXISTS code_chunks (\n            id          INTEGER PRIMARY KEY AUTOINCREMENT,\n            file_path   TEXT    NOT NULL,\n            chunk_type  TEXT    NOT NULL,\n            name        TEXT,\n            start_line  INTEGER NOT NULL,\n            end_line    INTEGER NOT NULL,\n            content     TEXT    NOT NULL,\n            language    TEXT    NOT NULL,\n            file_hash   TEXT,\n            indexed_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        CREATE TABLE IF NOT EXISTS code_vectors (\n            chunk_id    INTEGER PRIMARY KEY REFERENCES code_chunks(id) ON DELETE CASCADE,\n            embedding   BLOB    NOT NULL\n        );\n\n        CREATE TABLE IF NOT EXISTS indexed_files (\n            file_path   TEXT PRIMARY KEY,\n            file_hash   TEXT    NOT NULL,\n            indexed_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        -- ── Git history ────────────────────────────────\n        CREATE TABLE IF NOT EXISTS git_commits (\n            id          INTEGER PRIMARY KEY AUTOINCREMENT,\n            hash        TEXT    UNIQUE NOT NULL,\n            short_hash  TEXT    NOT NULL,\n            message     TEXT    NOT NULL,\n            author      TEXT    NOT NULL,\n            date        TEXT    NOT NULL,\n            timestamp   INTEGER NOT NULL,\n            files_json  TEXT    NOT NULL,\n            diff        TEXT,\n            additions   INTEGER DEFAULT 0,\n            deletions   INTEGER DEFAULT 0,\n            is_merge    INTEGER DEFAULT 0\n        );\n\n        CREATE TABLE IF NOT EXISTS commit_files (\n            commit_id   INTEGER NOT NULL REFERENCES git_commits(id),\n            file_path   TEXT    NOT NULL\n        );\n\n        CREATE TABLE IF NOT EXISTS co_edits (\n            file_a      TEXT NOT NULL,\n            file_b      TEXT NOT NULL,\n            count       INTEGER NOT NULL DEFAULT 1,\n            PRIMARY KEY (file_a, file_b)\n        );\n\n        CREATE TABLE IF NOT EXISTS git_vectors (\n            commit_id   INTEGER PRIMARY KEY REFERENCES git_commits(id) ON DELETE CASCADE,\n            embedding   BLOB    NOT NULL\n        );\n\n        -- ── Agent memory ───────────────────────────────\n        CREATE TABLE IF NOT EXISTS memory_patterns (\n            id           INTEGER PRIMARY KEY AUTOINCREMENT,\n            task_type    TEXT    NOT NULL,\n            task         TEXT    NOT NULL,\n            approach     TEXT    NOT NULL,\n            outcome      TEXT,\n            success_rate REAL    NOT NULL DEFAULT 0.5,\n            critique     TEXT,\n            tokens_used  INTEGER,\n            latency_ms   INTEGER,\n            created_at   INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        CREATE TABLE IF NOT EXISTS memory_vectors (\n            pattern_id  INTEGER PRIMARY KEY REFERENCES memory_patterns(id) ON DELETE CASCADE,\n            embedding   BLOB    NOT NULL\n        );\n\n        CREATE TABLE IF NOT EXISTS distilled_strategies (\n            task_type   TEXT PRIMARY KEY,\n            strategy    TEXT    NOT NULL,\n            confidence  REAL    NOT NULL DEFAULT 0.8,\n            updated_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        -- ── Indices ────────────────────────────────────\n        CREATE INDEX IF NOT EXISTS idx_cc_file      ON code_chunks(file_path);\n        CREATE INDEX IF NOT EXISTS idx_cf_path      ON commit_files(file_path);\n        CREATE INDEX IF NOT EXISTS idx_gc_ts        ON git_commits(timestamp DESC);\n        CREATE INDEX IF NOT EXISTS idx_gc_hash      ON git_commits(hash);\n        CREATE INDEX IF NOT EXISTS idx_mp_type      ON memory_patterns(task_type);\n        CREATE INDEX IF NOT EXISTS idx_mp_success   ON memory_patterns(success_rate);\n        CREATE INDEX IF NOT EXISTS idx_mp_created   ON memory_patterns(created_at);\n\n        -- ── FTS5 Full-Text Search ─────────────────────\n        -- Code chunks: search by file path, name, and content\n        CREATE VIRTUAL TABLE IF NOT EXISTS fts_code USING fts5(\n            file_path,\n            name,\n            content,\n            content='code_chunks',\n            content_rowid='id',\n            tokenize='porter unicode61'\n        );\n\n        -- Git commits: search by message, author, and diff\n        CREATE VIRTUAL TABLE IF NOT EXISTS fts_commits USING fts5(\n            message,\n            author,\n            diff,\n            content='git_commits',\n            content_rowid='id',\n            tokenize='porter unicode61'\n        );\n\n        -- Memory patterns: search by task type, task, approach, and critique\n        CREATE VIRTUAL TABLE IF NOT EXISTS fts_patterns USING fts5(\n            task_type,\n            task,\n            approach,\n            critique,\n            content='memory_patterns',\n            content_rowid='id',\n            tokenize='porter unicode61'\n        );\n\n        -- ── FTS5 Sync Triggers ────────────────────────\n        -- Auto-sync FTS indices on INSERT/UPDATE/DELETE\n\n        CREATE TRIGGER IF NOT EXISTS trg_fts_code_insert AFTER INSERT ON code_chunks BEGIN\n            INSERT INTO fts_code(rowid, file_path, name, content)\n            VALUES (new.id, new.file_path, COALESCE(new.name, ''), new.content);\n        END;\n        CREATE TRIGGER IF NOT EXISTS trg_fts_code_delete AFTER DELETE ON code_chunks BEGIN\n            INSERT INTO fts_code(fts_code, rowid, file_path, name, content)\n            VALUES ('delete', old.id, old.file_path, COALESCE(old.name, ''), old.content);\n        END;\n\n        CREATE TRIGGER IF NOT EXISTS trg_fts_commits_insert AFTER INSERT ON git_commits BEGIN\n            INSERT INTO fts_commits(rowid, message, author, diff)\n            VALUES (new.id, new.message, new.author, COALESCE(new.diff, ''));\n        END;\n        CREATE TRIGGER IF NOT EXISTS trg_fts_commits_delete AFTER DELETE ON git_commits BEGIN\n            INSERT INTO fts_commits(fts_commits, rowid, message, author, diff)\n            VALUES ('delete', old.id, old.message, old.author, COALESCE(old.diff, ''));\n        END;\n\n        CREATE TRIGGER IF NOT EXISTS trg_fts_patterns_insert AFTER INSERT ON memory_patterns BEGIN\n            INSERT INTO fts_patterns(rowid, task_type, task, approach, critique)\n            VALUES (new.id, new.task_type, new.task, new.approach, COALESCE(new.critique, ''));\n        END;\n        CREATE TRIGGER IF NOT EXISTS trg_fts_patterns_delete AFTER DELETE ON memory_patterns BEGIN\n            INSERT INTO fts_patterns(fts_patterns, rowid, task_type, task, approach, critique)\n            VALUES ('delete', old.id, old.task_type, old.task, old.approach, COALESCE(old.critique, ''));\n        END;\n\n        -- ── Note Memory ───────────────────────────────\n        CREATE TABLE IF NOT EXISTS note_memories (\n            id              INTEGER PRIMARY KEY AUTOINCREMENT,\n            title           TEXT    NOT NULL,\n            summary         TEXT    NOT NULL,\n            decisions_json  TEXT    NOT NULL DEFAULT '[]',\n            files_json      TEXT    NOT NULL DEFAULT '[]',\n            patterns_json   TEXT    NOT NULL DEFAULT '[]',\n            open_json       TEXT    NOT NULL DEFAULT '[]',\n            tags_json       TEXT    NOT NULL DEFAULT '[]',\n            tier            TEXT    NOT NULL DEFAULT 'short',\n            created_at      INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        CREATE TABLE IF NOT EXISTS note_vectors (\n            note_id     INTEGER PRIMARY KEY REFERENCES note_memories(id) ON DELETE CASCADE,\n            embedding   BLOB    NOT NULL\n        );\n\n        CREATE VIRTUAL TABLE IF NOT EXISTS fts_notes USING fts5(\n            title,\n            summary,\n            decisions,\n            patterns,\n            tags,\n            content='note_memories',\n            content_rowid='id',\n            tokenize='porter unicode61'\n        );\n\n        CREATE TRIGGER IF NOT EXISTS trg_fts_notes_insert AFTER INSERT ON note_memories BEGIN\n            INSERT INTO fts_notes(rowid, title, summary, decisions, patterns, tags)\n            VALUES (new.id, new.title, new.summary, new.decisions_json, new.patterns_json, new.tags_json);\n        END;\n        CREATE TRIGGER IF NOT EXISTS trg_fts_notes_delete AFTER DELETE ON note_memories BEGIN\n            INSERT INTO fts_notes(fts_notes, rowid, title, summary, decisions, patterns, tags)\n            VALUES ('delete', old.id, old.title, old.summary, old.decisions_json, old.patterns_json, old.tags_json);\n        END;\n\n        CREATE INDEX IF NOT EXISTS idx_nm_tier     ON note_memories(tier);\n        CREATE INDEX IF NOT EXISTS idx_nm_created  ON note_memories(created_at DESC);\n\n        -- ── Document Collections ──────────────────────\n        CREATE TABLE IF NOT EXISTS collections (\n            name        TEXT PRIMARY KEY,\n            path        TEXT    NOT NULL,\n            pattern     TEXT    NOT NULL DEFAULT '**/*.md',\n            ignore_json TEXT    NOT NULL DEFAULT '[]',\n            context     TEXT,\n            created_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        CREATE TABLE IF NOT EXISTS doc_chunks (\n            id           INTEGER PRIMARY KEY AUTOINCREMENT,\n            collection   TEXT    NOT NULL REFERENCES collections(name) ON DELETE CASCADE,\n            file_path    TEXT    NOT NULL,\n            title        TEXT    NOT NULL,\n            content      TEXT    NOT NULL,\n            seq          INTEGER NOT NULL DEFAULT 0,\n            pos          INTEGER NOT NULL DEFAULT 0,\n            content_hash TEXT    NOT NULL,\n            indexed_at   INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        CREATE TABLE IF NOT EXISTS doc_vectors (\n            chunk_id    INTEGER PRIMARY KEY REFERENCES doc_chunks(id) ON DELETE CASCADE,\n            embedding   BLOB    NOT NULL\n        );\n\n        CREATE INDEX IF NOT EXISTS idx_dc_collection ON doc_chunks(collection);\n        CREATE INDEX IF NOT EXISTS idx_dc_file       ON doc_chunks(file_path);\n        CREATE INDEX IF NOT EXISTS idx_dc_hash       ON doc_chunks(content_hash);\n\n        CREATE VIRTUAL TABLE IF NOT EXISTS fts_docs USING fts5(\n            title,\n            content,\n            file_path,\n            collection,\n            content='doc_chunks',\n            content_rowid='id',\n            tokenize='porter unicode61'\n        );\n\n        CREATE TRIGGER IF NOT EXISTS trg_fts_docs_insert AFTER INSERT ON doc_chunks BEGIN\n            INSERT INTO fts_docs(rowid, title, content, file_path, collection)\n            VALUES (new.id, new.title, new.content, new.file_path, new.collection);\n        END;\n        CREATE TRIGGER IF NOT EXISTS trg_fts_docs_delete AFTER DELETE ON doc_chunks BEGIN\n            INSERT INTO fts_docs(fts_docs, rowid, title, content, file_path, collection)\n            VALUES ('delete', old.id, old.title, old.content, old.file_path, old.collection);\n        END;\n\n        -- ── Path Contexts ─────────────────────────────\n        CREATE TABLE IF NOT EXISTS path_contexts (\n            collection  TEXT    NOT NULL,\n            path        TEXT    NOT NULL,\n            context     TEXT    NOT NULL,\n            PRIMARY KEY (collection, path)\n        );\n\n        -- ── Dynamic Collections (KV Store) ───────────\n        CREATE TABLE IF NOT EXISTS kv_data (\n            id          INTEGER PRIMARY KEY AUTOINCREMENT,\n            collection  TEXT    NOT NULL,\n            content     TEXT    NOT NULL,\n            meta_json   TEXT    NOT NULL DEFAULT '{}',\n            tags_json   TEXT    NOT NULL DEFAULT '[]',\n            expires_at  INTEGER,\n            created_at  INTEGER NOT NULL DEFAULT (unixepoch())\n        );\n\n        CREATE TABLE IF NOT EXISTS kv_vectors (\n            data_id   INTEGER PRIMARY KEY REFERENCES kv_data(id) ON DELETE CASCADE,\n            embedding BLOB    NOT NULL\n        );\n\n        CREATE VIRTUAL TABLE IF NOT EXISTS fts_kv USING fts5(\n            content,\n            collection,\n            content='kv_data',\n            content_rowid='id',\n            tokenize='porter unicode61'\n        );\n\n        CREATE TRIGGER IF NOT EXISTS trg_fts_kv_insert AFTER INSERT ON kv_data BEGIN\n            INSERT INTO fts_kv(rowid, content, collection)\n            VALUES (new.id, new.content, new.collection);\n        END;\n        CREATE TRIGGER IF NOT EXISTS trg_fts_kv_delete AFTER DELETE ON kv_data BEGIN\n            INSERT INTO fts_kv(fts_kv, rowid, content, collection)\n            VALUES ('delete', old.id, old.content, old.collection);\n        END;\n\n        CREATE INDEX IF NOT EXISTS idx_kv_collection ON kv_data(collection);\n        CREATE INDEX IF NOT EXISTS idx_kv_created    ON kv_data(created_at DESC);\n\n        -- ── Embedding Metadata ───────────────────────\n        CREATE TABLE IF NOT EXISTS embedding_meta (\n            key     TEXT PRIMARY KEY,\n            value   TEXT NOT NULL\n        );\n    `);\n}\n\n/**\n * Get the current schema version from the database.\n */\nexport function getSchemaVersion(db: Database.Database): number {\n    try {\n        const row = db.prepare('SELECT MAX(version) as v FROM schema_version').get() as any;\n        return row?.v ?? 0;\n    } catch {\n        return 0;\n    }\n}\n","/**\n * BrainBank — Re-embedding Engine\n * \n * Regenerates all vectors without re-indexing.\n * Reads existing text from SQLite, embeds with the current provider,\n * and replaces vector BLOBs. No file I/O, no git parsing, no re-chunking.\n * \n * Usage:\n *   const result = await brain.reembed({ onProgress });\n *   // → { code: 1200, git: 500, docs: 80, kv: 45, notes: 12, total: 1837 }\n */\n\nimport type { Database } from '../db/database.ts';\nimport type { EmbeddingProvider, ProgressCallback } from '../types.ts';\nimport type { HNSWIndex } from '../providers/vector/hnsw.ts';\n\n// ── Table Definitions ───────────────────────────────\n\ninterface ReembedTable {\n    /** Human-readable name (for progress) */\n    name: string;\n    /** Table with text content */\n    textTable: string;\n    /** Table with vector BLOBs */\n    vectorTable: string;\n    /** PK column in text table */\n    idColumn: string;\n    /** FK column in vector table */\n    fkColumn: string;\n    /** Build the embedding text from a row (same logic as each indexer) */\n    textBuilder: (row: any) => string;\n}\n\nconst TABLES: ReembedTable[] = [\n    {\n        name: 'code',\n        textTable: 'code_chunks',\n        vectorTable: 'code_vectors',\n        idColumn: 'id',\n        fkColumn: 'chunk_id',\n        textBuilder: (r) => [\n            `File: ${r.file_path}`,\n            r.name ? `${r.chunk_type}: ${r.name}` : r.chunk_type,\n            r.content,\n        ].join('\\n'),\n    },\n    {\n        name: 'git',\n        textTable: 'git_commits',\n        vectorTable: 'git_vectors',\n        idColumn: 'id',\n        fkColumn: 'commit_id',\n        // Must match git-engine.ts:119-125 exactly\n        textBuilder: (r) => [\n            `Commit: ${r.message}`,\n            `Author: ${r.author}`,\n            `Date: ${r.date}`,\n            r.files_json && r.files_json !== '[]'\n                ? `Files: ${JSON.parse(r.files_json).join(', ')}`\n                : '',\n            r.diff ? `Changes:\\n${r.diff.slice(0, 2000)}` : '',\n        ].filter(Boolean).join('\\n'),\n    },\n    {\n        name: 'memory',\n        textTable: 'memory_patterns',\n        vectorTable: 'memory_vectors',\n        idColumn: 'id',\n        fkColumn: 'pattern_id',\n        // Must match memory/pattern-store.ts:49 exactly\n        textBuilder: (r) => `${r.task_type} ${r.task} ${r.approach}`,\n    },\n    {\n        name: 'notes',\n        textTable: 'note_memories',\n        vectorTable: 'note_vectors',\n        idColumn: 'id',\n        fkColumn: 'note_id',\n        // Must match notes/engine.ts:90 exactly\n        textBuilder: (r) => {\n            const decisions = (JSON.parse(r.decisions_json || '[]') as string[]).join('. ');\n            const patterns  = (JSON.parse(r.patterns_json  || '[]') as string[]).join('. ');\n            return `${r.title}\\n${r.summary}\\n${decisions}\\n${patterns}`;\n        },\n    },\n    {\n        name: 'docs',\n        textTable: 'doc_chunks',\n        vectorTable: 'doc_vectors',\n        idColumn: 'id',\n        fkColumn: 'chunk_id',\n        // Must match docs-engine.ts:160 exactly\n        textBuilder: (r) => `title: ${r.title ?? ''} | text: ${r.content}`,\n    },\n    {\n        name: 'kv',\n        textTable: 'kv_data',\n        vectorTable: 'kv_vectors',\n        idColumn: 'id',\n        fkColumn: 'data_id',\n        textBuilder: (r) => r.content,\n    },\n];\n\n// ── Result ──────────────────────────────────────────\n\nexport interface ReembedResult {\n    code: number;\n    git: number;\n    memory: number;\n    notes: number;\n    docs: number;\n    kv: number;\n    total: number;\n}\n\nexport interface ReembedOptions {\n    /** Progress callback: (tableName, current, total) */\n    onProgress?: ProgressCallback;\n    /** Batch size for embedBatch. Default: 50 */\n    batchSize?: number;\n}\n\n// ── Engine ──────────────────────────────────────────\n\n/**\n * Re-embed all existing text with the current embedding provider.\n * Does NOT re-parse files, git, or documents — only replaces vectors.\n */\nexport async function reembedAll(\n    db: Database,\n    embedding: EmbeddingProvider,\n    hnswMap: Map<string, { hnsw: HNSWIndex; vecs: Map<number, Float32Array> }>,\n    options: ReembedOptions = {},\n): Promise<ReembedResult> {\n    const { batchSize = 50, onProgress } = options;\n    const result: Record<string, number> = {};\n    let total = 0;\n\n    for (const table of TABLES) {\n        const count = await reembedTable(db, embedding, table, batchSize, onProgress);\n        result[table.name] = count;\n        total += count;\n\n        // Rebuild HNSW if available\n        const entry = hnswMap.get(table.name);\n        if (entry && count > 0) {\n            await rebuildHnsw(db, table, entry.hnsw, entry.vecs);\n        }\n    }\n\n    // Update embedding metadata\n    const meta = {\n        provider: embedding.constructor?.name ?? 'unknown',\n        dims: String(embedding.dims),\n        reembedded_at: new Date().toISOString(),\n    };\n    const upsert = db.prepare(\n        'INSERT OR REPLACE INTO embedding_meta (key, value) VALUES (?, ?)'\n    );\n    for (const [k, v] of Object.entries(meta)) {\n        upsert.run(k, v);\n    }\n\n    return {\n        code: result.code ?? 0,\n        git: result.git ?? 0,\n        memory: result.memory ?? 0,\n        notes: result.notes ?? 0,\n        docs: result.docs ?? 0,\n        kv: result.kv ?? 0,\n        total,\n    };\n}\n\n/** Re-embed a single table. Returns count of vectors regenerated. */\nasync function reembedTable(\n    db: Database,\n    embedding: EmbeddingProvider,\n    table: ReembedTable,\n    batchSize: number,\n    onProgress?: ProgressCallback,\n): Promise<number> {\n    // Use pagination to avoid OOM on large tables\n    const totalCount = (db.prepare(\n        `SELECT COUNT(*) as c FROM ${table.textTable}`\n    ).get() as any).c;\n\n    if (totalCount === 0) return 0;\n\n    // Generate ALL new vectors first, before touching the database.\n    // This prevents data loss if embedBatch() fails partway through.\n    const allNewVectors: { id: number; vec: Float32Array }[] = [];\n\n    let processed = 0;\n    for (let offset = 0; offset < totalCount; offset += batchSize) {\n        const batch = db.prepare(\n            `SELECT * FROM ${table.textTable} LIMIT ? OFFSET ?`\n        ).all(batchSize, offset) as any[];\n        const texts = batch.map((r: any) => table.textBuilder(r));\n        const vectors = await embedding.embedBatch(texts);\n\n        for (let j = 0; j < batch.length; j++) {\n            allNewVectors.push({ id: batch[j][table.idColumn], vec: vectors[j] });\n        }\n\n        processed += batch.length;\n        onProgress?.(table.name, processed, totalCount);\n    }\n\n    // All embeddings succeeded — now atomically swap old → new\n    const insertVec = db.prepare(\n        `INSERT INTO ${table.vectorTable} (${table.fkColumn}, embedding) VALUES (?, ?)`\n    );\n\n    db.transaction(() => {\n        db.prepare(`DELETE FROM ${table.vectorTable}`).run();\n        for (const { id, vec } of allNewVectors) {\n            insertVec.run(id, Buffer.from(vec.buffer));\n        }\n    });\n\n    return processed;\n}\n\n/** Rebuild HNSW index from vector table. */\nasync function rebuildHnsw(\n    db: Database,\n    table: ReembedTable,\n    hnsw: HNSWIndex,\n    vecs: Map<number, Float32Array>,\n): Promise<void> {\n    // Wipe stale vectors before repopulating\n    vecs.clear();\n    hnsw.reinit();\n\n    const rows = db.prepare(\n        `SELECT ${table.fkColumn} as id, embedding FROM ${table.vectorTable}`\n    ).all() as any[];\n\n    for (const row of rows) {\n        const buf = Buffer.from(row.embedding);\n        const vec = new Float32Array(buf.buffer.slice(buf.byteOffset, buf.byteOffset + buf.byteLength));\n        hnsw.add(vec, row.id);\n        vecs.set(row.id, vec);\n    }\n}\n\n// ── Provider Detection ──────────────────────────────\n\n/** Get stored embedding metadata. Returns null if not set. */\nexport function getEmbeddingMeta(db: Database): { provider: string; dims: number } | null {\n    try {\n        const provider = db.prepare(\n            \"SELECT value FROM embedding_meta WHERE key = 'provider'\"\n        ).get() as any;\n        const dims = db.prepare(\n            \"SELECT value FROM embedding_meta WHERE key = 'dims'\"\n        ).get() as any;\n\n        if (!provider || !dims) return null;\n        return { provider: provider.value, dims: Number(dims.value) };\n    } catch {\n        return null;\n    }\n}\n\n/** Store current provider info. */\nexport function setEmbeddingMeta(db: Database, embedding: EmbeddingProvider): void {\n    const upsert = db.prepare(\n        'INSERT OR REPLACE INTO embedding_meta (key, value) VALUES (?, ?)'\n    );\n    upsert.run('provider', embedding.constructor?.name ?? 'unknown');\n    upsert.run('dims', String(embedding.dims));\n    upsert.run('indexed_at', new Date().toISOString());\n}\n\n/** Check if the configured provider differs from what's stored. */\nexport function detectProviderMismatch(\n    db: Database,\n    embedding: EmbeddingProvider,\n): { mismatch: boolean; stored: string; current: string } | null {\n    const meta = getEmbeddingMeta(db);\n    if (!meta) return null; // First time, no mismatch\n\n    const currentName = embedding.constructor?.name ?? 'unknown';\n    const mismatch = meta.dims !== embedding.dims || meta.provider !== currentName;\n\n    return {\n        mismatch,\n        stored: `${meta.provider}/${meta.dims}`,\n        current: `${currentName}/${embedding.dims}`,\n    };\n}\n","/**\n * BrainBank — Initializer\n *\n * Two-phase initialization keeps the dependency ordering correct:\n *   Phase 1 (earlyInit)  — db, embedding, kvHnsw.  Must be assigned to\n *            `this` on BrainBank before phase 2, so that collection()\n *            works when indexers call ctx.collection() during initialize().\n *   Phase 2 (lateInit)   — loads vectors, runs indexers, builds search.\n */\n\nimport { Database } from '../db/database.ts';\nimport { HNSWIndex } from '../providers/vector/hnsw.ts';\nimport { LocalEmbedding } from '../providers/embeddings/local.ts';\nimport { MultiIndexSearch } from '../search/vector/multi-index.ts';\nimport { BM25Search } from '../search/keyword/bm25.ts';\nimport { ContextBuilder } from './context-builder.ts';\nimport { setEmbeddingMeta, detectProviderMismatch } from '../services/reembed.ts';\nimport type { IndexerRegistry } from './registry.ts';\nimport type { Collection } from './collection.ts';\nimport type { ResolvedConfig, EmbeddingProvider } from '../types.ts';\nimport type { IndexerContext } from '../indexers/base.ts';\n\n// ── Result types ─────────────────────────────────────\n\n/** Available after phase 1 — before indexers run. */\nexport interface EarlyInit {\n    db: Database;\n    embedding: EmbeddingProvider;\n    kvHnsw: HNSWIndex;\n    skipVectorLoad: boolean;\n}\n\n/** Available after phase 2 — once indexers have initialized. */\nexport interface LateInit {\n    search?: MultiIndexSearch;\n    bm25?: BM25Search;\n    contextBuilder?: ContextBuilder;\n}\n\n// ── Phase 1 ──────────────────────────────────────────\n\nexport async function earlyInit(\n    config: ResolvedConfig,\n    emit: (event: string, data: any) => void,\n): Promise<EarlyInit> {\n    const db = new Database(config.dbPath);\n    const embedding: EmbeddingProvider = config.embeddingProvider ?? new LocalEmbedding();\n\n    // Must check BEFORE setEmbeddingMeta overwrites stored values\n    const mismatch = detectProviderMismatch(db, embedding);\n    const skipVectorLoad = !!mismatch?.mismatch;\n\n    if (skipVectorLoad) {\n        emit('warning', {\n            type: 'provider_mismatch',\n            previous: mismatch!.stored,\n            current: mismatch!.current,\n            message: 'Embedding provider changed — vectors not loaded. Run brain.reembed() to regenerate.',\n        });\n    }\n\n    setEmbeddingMeta(db, embedding);\n\n    const kvHnsw = new HNSWIndex(\n        config.embeddingDims,\n        config.maxElements ?? 500_000,\n        config.hnswM,\n        config.hnswEfConstruction,\n        config.hnswEfSearch,\n    );\n    await kvHnsw.init();\n\n    return { db, embedding, kvHnsw, skipVectorLoad };\n}\n\n// ── Phase 2 ──────────────────────────────────────────\n\nexport async function lateInit(\n    early: EarlyInit,\n    config: ResolvedConfig,\n    registry: IndexerRegistry,\n    sharedHnsw: Map<string, { hnsw: HNSWIndex; vecCache: Map<number, Float32Array> }>,\n    kvVecs: Map<number, Float32Array>,\n    getCollection: (name: string) => Collection,\n): Promise<LateInit> {\n    const { db, embedding, kvHnsw, skipVectorLoad } = early;\n\n    if (!skipVectorLoad) {\n        loadVectors(db, 'kv_vectors', 'data_id', kvHnsw, kvVecs);\n    }\n\n    const ctx: IndexerContext = {\n        db,\n        embedding,\n        config,\n\n        createHnsw: (maxElements?: number) =>\n            new HNSWIndex(\n                config.embeddingDims,\n                maxElements ?? config.maxElements,\n                config.hnswM,\n                config.hnswEfConstruction,\n                config.hnswEfSearch,\n            ).init(),\n\n        loadVectors: (table, idCol, hnsw, cache) => {\n            if (skipVectorLoad) return;\n            loadVectors(db, table, idCol, hnsw, cache);\n        },\n\n        getOrCreateSharedHnsw: async (type, maxElements) => {\n            const existing = sharedHnsw.get(type);\n            if (existing) return { ...existing, isNew: false };\n\n            const hnsw = await new HNSWIndex(\n                config.embeddingDims,\n                maxElements ?? config.maxElements,\n                config.hnswM,\n                config.hnswEfConstruction,\n                config.hnswEfSearch,\n            ).init();\n\n            const vecCache = new Map<number, Float32Array>();\n            sharedHnsw.set(type, { hnsw, vecCache });\n            return { hnsw, vecCache, isNew: true };\n        },\n\n        collection: getCollection,\n    };\n\n    for (const mod of registry.all) {\n        await mod.initialize(ctx);\n    }\n\n    // ── Cross-module search ──────────────────────────\n    const codeMod = sharedHnsw.get('code');\n    const gitMod  = sharedHnsw.get('git');\n    const memMod  = registry.firstByType('memory') as any;\n\n    let search: MultiIndexSearch | undefined;\n    let bm25:   BM25Search | undefined;\n    let contextBuilder: ContextBuilder | undefined;\n\n    if (codeMod || gitMod || memMod) {\n        search = new MultiIndexSearch({\n            db,\n            codeHnsw:    codeMod?.hnsw,\n            gitHnsw:     gitMod?.hnsw,\n            patternHnsw: memMod?.hnsw,\n            codeVecs:    codeMod?.vecCache ?? new Map(),\n            gitVecs:     gitMod?.vecCache  ?? new Map(),\n            patternVecs: memMod?.vecCache  ?? new Map(),\n            embedding,\n            reranker: config.reranker,\n        });\n        bm25 = new BM25Search(db);\n    }\n\n    if (search) {\n        const firstGit = registry.firstByType('git') as any;\n        contextBuilder = new ContextBuilder(search, firstGit?.coEdits);\n    }\n\n    return { search, bm25, contextBuilder };\n}\n\n// ── Shared helper ─────────────────────────────────────\n\nexport function loadVectors(\n    db: Database,\n    table: string,\n    idCol: string,\n    hnsw: HNSWIndex,\n    cache: Map<number, Float32Array>,\n): void {\n    const rows = db.prepare(`SELECT ${idCol}, embedding FROM ${table}`).all() as any[];\n    for (const row of rows) {\n        const vec = new Float32Array(\n            row.embedding.buffer.slice(\n                row.embedding.byteOffset,\n                row.embedding.byteOffset + row.embedding.byteLength,\n            ),\n        );\n        hnsw.add(vec, row[idCol]);\n        cache.set(row[idCol], vec);\n    }\n}\n","/**\n * BrainBank — Search API\n *\n * All search and context operations in one place.\n * Composed from MultiIndexSearch, BM25, ContextBuilder, and KV collections.\n * Always created after initialization (even when search services are absent),\n * so BrainBank can unconditionally delegate to it.\n */\n\nimport type { MultiIndexSearch } from '../search/vector/multi-index.ts';\nimport type { BM25Search } from '../search/keyword/bm25.ts';\nimport type { ContextBuilder } from './context-builder.ts';\nimport type { Collection } from './collection.ts';\nimport type { IndexerRegistry } from './registry.ts';\nimport type { ResolvedConfig, SearchResult, ContextOptions } from '../types.ts';\nimport { reciprocalRankFusion } from '../search/rrf.ts';\n\nexport interface SearchAPIDeps {\n    search?:         MultiIndexSearch;\n    bm25?:           BM25Search;\n    contextBuilder?: ContextBuilder;\n    registry:        IndexerRegistry;\n    config:          ResolvedConfig;\n    searchDocs(query: string, options?: { collection?: string; k?: number; minScore?: number }): Promise<SearchResult[]>;\n    collection(name: string): Collection;\n}\n\nexport class SearchAPI {\n    constructor(private _d: SearchAPIDeps) {}\n\n    // ── Vector ──────────────────────────────────────\n\n    async search(query: string, options?: {\n        codeK?: number; gitK?: number; patternK?: number;\n        minScore?: number; useMMR?: boolean;\n    }): Promise<SearchResult[]> {\n        if (!this._d.search) {\n            return this._d.registry.has('docs')\n                ? this._d.searchDocs(query, { k: 8 })\n                : [];\n        }\n        return this._d.search.search(query, options);\n    }\n\n    async searchCode(query: string, k = 8): Promise<SearchResult[]> {\n        if (!this._d.registry.firstByType('code'))\n            throw new Error(\"BrainBank: Indexer 'code' is not loaded. Add .use(code()) to your BrainBank instance.\");\n        if (!this._d.search)\n            throw new Error('BrainBank: MultiIndexSearch not available. Ensure code indexer is loaded.');\n        return this._d.search.search(query, { codeK: k, gitK: 0, patternK: 0 });\n    }\n\n    async searchCommits(query: string, k = 8): Promise<SearchResult[]> {\n        if (!this._d.registry.firstByType('git'))\n            throw new Error(\"BrainBank: Indexer 'git' is not loaded. Add .use(git()) to your BrainBank instance.\");\n        if (!this._d.search)\n            throw new Error('BrainBank: MultiIndexSearch not available. Ensure git indexer is loaded.');\n        return this._d.search.search(query, { codeK: 0, gitK: k, patternK: 0 });\n    }\n\n    // ── Hybrid ──────────────────────────────────────\n\n    async hybridSearch(query: string, options?: {\n        codeK?: number; gitK?: number; patternK?: number;\n        minScore?: number; useMMR?: boolean;\n        collections?: Record<string, number>;\n    }): Promise<SearchResult[]> {\n        const cols  = options?.collections ?? {};\n        const codeK = cols.code ?? options?.codeK ?? 6;\n        const gitK  = cols.git  ?? options?.gitK  ?? 5;\n        const docsK = cols.docs ?? 8;\n\n        const resultLists: SearchResult[][] = [];\n\n        if (this._d.search) {\n            const [vec, kw] = await Promise.all([\n                this._d.search.search(query, { ...options, codeK, gitK }),\n                Promise.resolve(this._d.bm25!.search(query, { codeK, gitK })),\n            ]);\n            resultLists.push(vec, kw);\n        }\n\n        if (this._d.registry.has('docs')) {\n            const docs = await this._d.searchDocs(query, { k: docsK });\n            if (docs.length > 0) resultLists.push(docs);\n        }\n\n        // KV collections (any non-reserved key in `collections`)\n        const reserved = new Set(['code', 'git', 'docs']);\n        for (const [name, k] of Object.entries(cols)) {\n            if (reserved.has(name)) continue;\n            const hits = await this._d.collection(name).search(query, { k });\n            if (hits.length > 0) {\n                resultLists.push(hits.map(h => ({\n                    type: 'collection' as const,\n                    score: h.score ?? 0,\n                    content: h.content,\n                    metadata: { collection: name, id: h.id, ...h.metadata },\n                })));\n            }\n        }\n\n        if (resultLists.length === 0) return [];\n\n        const fused = reciprocalRankFusion(resultLists);\n\n        if (this._d.config.reranker && fused.length > 1) {\n            const scores = await this._d.config.reranker.rank(query, fused.map(r => r.content));\n            return fused\n                .map((r, i) => {\n                    const w = (i < 3) ? 0.75 : (i < 10) ? 0.60 : 0.40;\n                    return { ...r, score: w * r.score + (1 - w) * (scores[i] ?? 0) };\n                })\n                .sort((a, b) => b.score - a.score);\n        }\n\n        return fused;\n    }\n\n    // ── Keyword ─────────────────────────────────────\n\n    searchBM25(query: string, options?: { codeK?: number; gitK?: number; patternK?: number }): SearchResult[] {\n        return this._d.bm25?.search(query, options) ?? [];\n    }\n\n    rebuildFTS(): void { this._d.bm25?.rebuild(); }\n\n    // ── Context ─────────────────────────────────────\n\n    async getContext(task: string, options: ContextOptions = {}): Promise<string> {\n        const sections: string[] = [];\n\n        if (this._d.contextBuilder) {\n            const core = await this._d.contextBuilder.build(task, options);\n            if (core) sections.push(core);\n        }\n\n        if (this._d.registry.has('docs')) {\n            const docs = await this._d.searchDocs(task, { k: options.codeResults ?? 4 });\n            if (docs.length > 0) {\n                const body = docs.map(r => {\n                    const m = r.metadata as Record<string, any>;\n                    const h = r.context\n                        ? `**[${m.collection}]** ${m.title} — _${r.context}_`\n                        : `**[${m.collection}]** ${m.title}`;\n                    return `${h}\\n\\n${r.content}`;\n                }).join('\\n\\n---\\n\\n');\n                sections.push(`## Relevant Documents\\n\\n${body}`);\n            }\n        }\n\n        return sections.join('\\n\\n');\n    }\n}\n","/**\n * BrainBank — Index API\n *\n * Orchestrates indexing across code, git, and document indexers.\n * BrainBank delegates here after auto-initialization.\n */\n\nimport type { IndexerRegistry } from './registry.ts';\nimport type { IndexResult, StageProgressCallback, ProgressCallback } from '../types.ts';\n\nexport interface IndexAPIDeps {\n    registry: IndexerRegistry;\n    gitDepth: number;\n    emit: (event: string, data: any) => void;\n}\n\nexport class IndexAPI {\n    constructor(private _d: IndexAPIDeps) {}\n\n    async index(options: {\n        modules?: ('code' | 'git' | 'docs')[];\n        gitDepth?: number;\n        forceReindex?: boolean;\n        onProgress?: StageProgressCallback;\n    } = {}): Promise<{ code?: IndexResult; git?: IndexResult; docs?: Record<string, { indexed: number; skipped: number; chunks: number }> }> {\n        const want   = new Set(options.modules ?? ['code', 'git', 'docs']);\n        const result: { code?: IndexResult; git?: IndexResult; docs?: Record<string, any> } = {};\n\n        if (want.has('code')) {\n            for (const mod of this._d.registry.allByType('code')) {\n                const label = mod.name === 'code' ? 'code' : mod.name;\n                options.onProgress?.(label, 'Starting...');\n                const r = await mod.index!({\n                    forceReindex: options.forceReindex,\n                    onProgress: (f: string, i: number, t: number) => options.onProgress?.(label, `[${i}/${t}] ${f}`),\n                });\n                if (result.code) {\n                    result.code.indexed += r.indexed;\n                    result.code.skipped += r.skipped;\n                    result.code.chunks = (result.code.chunks ?? 0) + (r.chunks ?? 0);\n                } else {\n                    result.code = r;\n                }\n            }\n        }\n\n        if (want.has('git')) {\n            for (const mod of this._d.registry.allByType('git')) {\n                const label = mod.name === 'git' ? 'git' : mod.name;\n                options.onProgress?.(label, 'Starting...');\n                const r = await mod.index!({\n                    depth: options.gitDepth ?? this._d.gitDepth,\n                    onProgress: (f: string, i: number, t: number) => options.onProgress?.(label, `[${i}/${t}] ${f}`),\n                });\n                if (result.git) {\n                    result.git.indexed += r.indexed;\n                    result.git.skipped += r.skipped;\n                } else {\n                    result.git = r;\n                }\n            }\n        }\n\n        if (want.has('docs') && this._d.registry.has('docs')) {\n            options.onProgress?.('docs', 'Starting...');\n            result.docs = await this._d.registry.get('docs').indexCollections!({\n                onProgress: (coll: string, file: string, cur: number, total: number) =>\n                    options.onProgress?.('docs', `[${coll}] ${cur}/${total}: ${file}`),\n            });\n        }\n\n        this._d.emit('indexed', result);\n        return result;\n    }\n\n    async indexCode(options: { forceReindex?: boolean; onProgress?: ProgressCallback } = {}): Promise<IndexResult> {\n        const mods = this._d.registry.allByType('code');\n        if (!mods.length) throw new Error(\"BrainBank: Indexer 'code' is not loaded. Add .use(code()) to your BrainBank instance.\");\n\n        const acc: IndexResult = { indexed: 0, skipped: 0, chunks: 0 };\n        for (const mod of mods) {\n            const r = await mod.index!(options);\n            acc.indexed += r.indexed;\n            acc.skipped += r.skipped;\n            acc.chunks  = (acc.chunks ?? 0) + (r.chunks ?? 0);\n        }\n        return acc;\n    }\n\n    async indexGit(options: { depth?: number; onProgress?: ProgressCallback } = {}): Promise<IndexResult> {\n        const mods = this._d.registry.allByType('git');\n        if (!mods.length) throw new Error(\"BrainBank: Indexer 'git' is not loaded. Add .use(git()) to your BrainBank instance.\");\n\n        const acc: IndexResult = { indexed: 0, skipped: 0 };\n        for (const mod of mods) {\n            const r = await mod.index!(options);\n            acc.indexed += r.indexed;\n            acc.skipped += r.skipped;\n        }\n        return acc;\n    }\n}\n","/**\n * BrainBank — Watch Mode\n * \n * Auto-indexes on file changes using fs.watch.\n * Works with built-in indexers (code, git, docs) and custom indexers.\n * \n * Built-in behavior:\n *   - Code files → re-indexes changed file\n *   - Doc files  → re-indexes changed collection\n * \n * Custom indexers:\n *   - Implement `onFileChange(path, event)` to handle changes\n *   - Implement `watchPatterns()` to specify which files to watch\n * \n * Usage:\n *   const watcher = brain.watch({ paths: ['.'] });\n *   watcher.close(); // stop watching\n */\n\nimport * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport { isSupported, isIgnoredDir, isIgnoredFile } from '../indexers/languages.ts';\nimport type { Indexer } from '../indexers/base.ts';\n\n// ── Types ───────────────────────────────────────────\n\nexport interface WatchOptions {\n    /** Paths to watch. Default: [config.repoPath] */\n    paths?: string[];\n    /** Debounce interval in ms. Default: 2000 */\n    debounceMs?: number;\n    /** Called when a file is re-indexed. */\n    onIndex?: (filePath: string, indexer: string) => void;\n    /** Called on errors. */\n    onError?: (error: Error) => void;\n}\n\nexport interface Watcher {\n    /** Stop watching. */\n    close(): void;\n    /** Whether the watcher is active. */\n    readonly active: boolean;\n}\n\n// ── Watch Engine ────────────────────────────────────\n\n/**\n * Create a file watcher that auto-re-indexes on changes.\n * \n * @param reindexFn  — called to re-index code+git (brain.index())\n * @param indexers   — registered indexers (for custom onFileChange hooks)\n * @param repoPath   — base repo path (for resolving relative paths)\n * @param options    — watch configuration\n */\nexport function createWatcher(\n    reindexFn: () => Promise<void>,\n    indexers: Map<string, Indexer>,\n    repoPath: string,\n    options: WatchOptions = {},\n): Watcher {\n    const {\n        paths = [repoPath],\n        debounceMs = 2000,\n        onIndex,\n        onError,\n    } = options;\n\n    let active = true;\n    const watchers: fs.FSWatcher[] = [];\n    const pending = new Set<string>();\n    let timer: ReturnType<typeof setTimeout> | null = null;\n\n    // Collect custom watch patterns from indexers\n    const customPatterns: { indexer: Indexer; patterns: string[] }[] = [];\n    for (const indexer of indexers.values()) {\n        if (indexer.watchPatterns) {\n            customPatterns.push({ indexer, patterns: indexer.watchPatterns() });\n        }\n    }\n\n    // Check if a file matches any custom indexer pattern\n    function matchCustomIndexer(filePath: string): Indexer | null {\n        const rel = path.relative(repoPath, filePath);\n        for (const { indexer, patterns } of customPatterns) {\n            for (const pattern of patterns) {\n                if (matchGlob(rel, pattern)) return indexer;\n            }\n        }\n        return null;\n    }\n\n    // Simple glob matching (supports **, *, and extension matching)\n    function matchGlob(filePath: string, pattern: string): boolean {\n        // **/*.ext → match any file with that extension\n        if (pattern.startsWith('**/')) {\n            const suffix = pattern.slice(3); // e.g. \"*.csv\"\n            const ext = suffix.startsWith('*.') ? suffix.slice(1) : null; // e.g. \".csv\"\n            if (ext) return filePath.endsWith(ext);\n            return path.basename(filePath) === suffix;\n        }\n        // *.ext → match extension in any directory\n        if (pattern.startsWith('*.')) {\n            return filePath.endsWith(pattern.slice(1));\n        }\n        return filePath === pattern;\n    }\n\n    // Process pending file changes\n    async function flush() {\n        if (pending.size === 0) return;\n\n        const files = [...pending];\n        pending.clear();\n\n        // Group by handler\n        let needsReindex = false;\n\n        for (const filePath of files) {\n            const absPath = path.resolve(repoPath, filePath);\n\n            // Try custom indexers first\n            const customIndexer = matchCustomIndexer(absPath);\n            if (customIndexer?.onFileChange) {\n                try {\n                    const handled = await customIndexer.onFileChange(absPath, detectEvent(absPath));\n                    if (handled) {\n                        onIndex?.(filePath, customIndexer.name);\n                        continue;\n                    }\n                } catch (err) {\n                    onError?.(err instanceof Error ? err : new Error(String(err)));\n                }\n            }\n\n            // Fall back to built-in re-index for supported code files\n            if (isSupported(filePath)) {\n                needsReindex = true;\n                onIndex?.(filePath, 'code');\n            }\n        }\n\n        // Batch re-index if any code files changed\n        if (needsReindex) {\n            try {\n                await reindexFn();\n            } catch (err) {\n                onError?.(err instanceof Error ? err : new Error(String(err)));\n            }\n        }\n    }\n\n    function detectEvent(filePath: string): 'create' | 'update' | 'delete' {\n        try {\n            fs.accessSync(filePath);\n            return 'update';\n        } catch {\n            return 'delete';\n        }\n    }\n\n    // Should we watch this file?\n    function shouldWatch(filename: string): boolean {\n        if (!filename) return false;\n        const parts = filename.split(path.sep);\n\n        // Skip ignored directories\n        for (const part of parts) {\n            if (isIgnoredDir(part)) return false;\n        }\n\n        // Skip ignored files\n        if (isIgnoredFile(path.basename(filename))) return false;\n\n        // Accept supported code files\n        if (isSupported(filename)) return true;\n\n        // Accept files matching custom indexer patterns\n        if (matchCustomIndexer(path.resolve(repoPath, filename))) return true;\n\n        return false;\n    }\n\n    // Set up watchers\n    for (const watchPath of paths) {\n        const resolved = path.resolve(watchPath);\n        try {\n            // { recursive: true } only works on macOS + Windows; Linux needs chokidar or per-dir watchers\n            const supportsRecursive = process.platform === 'darwin' || process.platform === 'win32';\n            const watcher = fs.watch(resolved, { recursive: supportsRecursive }, (_event, filename) => {\n                if (!active || !filename) return;\n                if (!shouldWatch(filename)) return;\n\n                pending.add(filename);\n\n                // Debounce\n                if (timer) clearTimeout(timer);\n                timer = setTimeout(() => flush(), debounceMs);\n            });\n\n            watcher.on('error', (err) => {\n                onError?.(err instanceof Error ? err : new Error(String(err)));\n            });\n\n            watchers.push(watcher);\n        } catch (err) {\n            onError?.(err instanceof Error ? err : new Error(String(err)));\n        }\n    }\n\n    return {\n        close() {\n            active = false;\n            if (timer) clearTimeout(timer);\n            for (const w of watchers) w.close();\n            watchers.length = 0;\n        },\n        get active() { return active; },\n    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package/dist/cli.js

@@ -1,17 +1,17 @@
 #!/usr/bin/env node
 import {
   BrainBank
-} from "./chunk-6MFTQV3O.js";
+} from "./chunk-ZJ5LLMGM.js";
 import {
   code
-} from "./chunk-WR4WXKJT.js";
+} from "./chunk-4DM3XWO6.js";
 import {
   git
 } from "./chunk-7JCEW7LT.js";
 import {
   docs
-} from "./chunk-F6SJ3U4H.js";
-import "./chunk-V4UJKXPK.js";
+} from "./chunk-T2VXF5S5.js";
+import "./chunk-FEAMUZGJ.js";
 import "./chunk-QNHBCOKB.js";
 import {
   __name
@@ -37,6 +37,29 @@ function hasFlag(name) {
   return args.includes(`--${name}`);
 }
 __name(hasFlag, "hasFlag");
+var VALUE_FLAGS = /* @__PURE__ */ new Set([
+  "repo",
+  "depth",
+  "collection",
+  "pattern",
+  "context",
+  "name",
+  "keep",
+  "reranker"
+]);
+function stripFlags(argv) {
+  const result = [];
+  for (let i = 0; i < argv.length; i++) {
+    if (argv[i].startsWith("--")) {
+      const name = argv[i].slice(2);
+      if (VALUE_FLAGS.has(name)) i++;
+      continue;
+    }
+    result.push(argv[i]);
+  }
+  return result;
+}
+__name(stripFlags, "stripFlags");
 function printResults(results) {
   if (results.length === 0) {
     console.log(c.yellow("  No results found."));
@@ -454,7 +477,7 @@ async function cmdDocs() {
 }
 __name(cmdDocs, "cmdDocs");
 async function cmdDocSearch() {
-  const query = args.slice(1).filter((a) => !a.startsWith("--")).join(" ");
+  const query = stripFlags(args).slice(1).join(" ");
   if (!query) {
     console.log(c.red("Usage: brainbank dsearch <query>"));
     process.exit(1);
@@ -485,7 +508,7 @@ __name(cmdDocSearch, "cmdDocSearch");
 
 // src/cli/commands/search.ts
 async function cmdSearch() {
-  const query = args.slice(1).join(" ");
+  const query = stripFlags(args).slice(1).join(" ");
   if (!query) {
     console.log(c.red("Usage: brainbank search <query>"));
     process.exit(1);
@@ -500,7 +523,7 @@ async function cmdSearch() {
 }
 __name(cmdSearch, "cmdSearch");
 async function cmdHybridSearch() {
-  const query = args.slice(1).filter((a) => !a.startsWith("--")).join(" ");
+  const query = stripFlags(args).slice(1).join(" ");
   if (!query) {
     console.log(c.red("Usage: brainbank hsearch <query>"));
     process.exit(1);
@@ -516,7 +539,7 @@ async function cmdHybridSearch() {
 }
 __name(cmdHybridSearch, "cmdHybridSearch");
 async function cmdKeywordSearch() {
-  const query = args.slice(1).filter((a) => !a.startsWith("--")).join(" ");
+  const query = stripFlags(args).slice(1).join(" ");
   if (!query) {
     console.log(c.red("Usage: brainbank ksearch <query>"));
     process.exit(1);
@@ -566,7 +589,7 @@ async function cmdContext() {
     brain2.close();
     return;
   }
-  const task = args.slice(1).join(" ");
+  const task = stripFlags(args).slice(1).join(" ");
   if (!task) {
     console.log(c.red("Usage: brainbank context <task description>"));
     console.log(c.dim("       brainbank context add <collection> <path> <description>"));