brainbank 0.1.1 → 0.2.0

package/dist/chunk-WR4WXKJT.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/indexers/code/code-indexer.ts","../src/indexers/code/code-chunker.ts","../src/indexers/code/grammars.ts","../src/indexers/languages.ts","../src/indexers/code/code-plugin.ts"],"sourcesContent":["/**\n * BrainBank — Code Indexer\n * \n * Walks a repository, chunks source files semantically,\n * embeds each chunk, and stores in SQLite + HNSW.\n * Incremental: only re-indexes files that changed (by content hash).\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { CodeChunker } from './code-chunker.ts';\nimport { SUPPORTED_EXTENSIONS, IGNORE_DIRS, isIgnoredDir, isIgnoredFile } from '../languages.ts';\nimport type { Database } from '../../db/database.ts';\nimport type { EmbeddingProvider, ProgressCallback, IndexResult } from '../../types.ts';\nimport type { HNSWIndex } from '../../providers/vector/hnsw.ts';\n\nexport interface CodeIndexerDeps {\n    db: Database;\n    hnsw: HNSWIndex;\n    vectorCache: Map<number, Float32Array>;\n    embedding: EmbeddingProvider;\n}\n\nexport interface CodeIndexOptions {\n    forceReindex?: boolean;\n    onProgress?: ProgressCallback;\n}\n\nexport class CodeIndexer {\n    private _chunker = new CodeChunker();\n    private _deps: CodeIndexerDeps;\n    private _repoPath: string;\n    private _maxFileSize: number;\n\n    constructor(repoPath: string, deps: CodeIndexerDeps, maxFileSize: number = 512_000) {\n        this._deps = deps;\n        this._repoPath = repoPath;\n        this._maxFileSize = maxFileSize;\n    }\n\n    /**\n     * Index all supported files in the repository.\n     * Skips unchanged files (same content hash).\n     */\n    async index(options: CodeIndexOptions = {}): Promise<IndexResult> {\n        const { forceReindex = false, onProgress } = options;\n        const files = this._walkRepo(this._repoPath);\n        let indexed = 0, skipped = 0, totalChunks = 0;\n\n        for (let i = 0; i < files.length; i++) {\n            const filePath = files[i];\n            const rel = path.relative(this._repoPath, filePath);\n            onProgress?.(rel, i + 1, files.length);\n\n            let content: string;\n            try { content = fs.readFileSync(filePath, 'utf-8'); }\n            catch { continue; }\n\n            const hash = this._hash(content);\n            const existing = this._deps.db.prepare(\n                'SELECT file_hash FROM indexed_files WHERE file_path = ?'\n            ).get(rel) as any;\n\n            if (!forceReindex && existing?.file_hash === hash) {\n                skipped++;\n                continue;\n            }\n\n            // Always clean up old chunks for this file (catches orphaned chunks from interrupted first-run)\n            const oldChunks = this._deps.db.prepare(\n                'SELECT id FROM code_chunks WHERE file_path = ?'\n            ).all(rel) as any[];\n            if (oldChunks.length > 0) {\n                for (const { id } of oldChunks) {\n                    this._deps.hnsw.remove(id);\n                    this._deps.vectorCache.delete(id);\n                }\n                this._deps.db.prepare('DELETE FROM code_chunks WHERE file_path = ?').run(rel);\n            }\n\n            const ext = path.extname(filePath).toLowerCase();\n            const language = SUPPORTED_EXTENSIONS[ext] ?? 'text';\n            const chunks = await this._chunker.chunk(rel, content, language);\n\n            // Build embedding texts for all chunks and batch embed (10-50x faster)\n            const embeddingTexts = chunks.map(chunk => [\n                `File: ${rel}`,\n                chunk.name ? `${chunk.chunkType}: ${chunk.name}` : chunk.chunkType,\n                chunk.content,\n            ].join('\\n'));\n\n            const vecs = await this._deps.embedding.embedBatch(embeddingTexts);\n\n            // Insert chunks + vectors individually (preserves auto-increment ID ordering)\n            for (let ci = 0; ci < chunks.length; ci++) {\n                const chunk = chunks[ci];\n                const result = this._deps.db.prepare(\n                    `INSERT INTO code_chunks (file_path, chunk_type, name, start_line, end_line, content, language, file_hash)\n                     VALUES (?, ?, ?, ?, ?, ?, ?, ?)`\n                ).run(rel, chunk.chunkType, chunk.name ?? null, chunk.startLine, chunk.endLine, chunk.content, language, hash);\n\n                const id = Number(result.lastInsertRowid);\n                this._deps.db.prepare(\n                    'INSERT INTO code_vectors (chunk_id, embedding) VALUES (?, ?)'\n                ).run(id, Buffer.from(vecs[ci].buffer));\n\n                this._deps.hnsw.add(vecs[ci], id);\n                this._deps.vectorCache.set(id, vecs[ci]);\n                totalChunks++;\n            }\n\n            // Mark file as indexed\n            this._deps.db.prepare(\n                'INSERT OR REPLACE INTO indexed_files (file_path, file_hash) VALUES (?, ?)'\n            ).run(rel, hash);\n            indexed++;\n        }\n\n        return { indexed, skipped, chunks: totalChunks };\n    }\n\n    // ── File Walker ─────────────────────────────────\n\n    private _walkRepo(dir: string, files: string[] = []): string[] {\n        let entries: fs.Dirent[];\n        try { entries = fs.readdirSync(dir, { withFileTypes: true }); }\n        catch { return files; }\n\n        for (const entry of entries) {\n            if (entry.isDirectory()) {\n                if (isIgnoredDir(entry.name)) continue;\n                this._walkRepo(path.join(dir, entry.name), files);\n            } else if (entry.isFile()) {\n                if (isIgnoredFile(entry.name)) continue;\n                const ext = path.extname(entry.name).toLowerCase();\n                if (!(ext in SUPPORTED_EXTENSIONS)) continue;\n\n                const full = path.join(dir, entry.name);\n                try {\n                    if (fs.statSync(full).size <= this._maxFileSize) {\n                        files.push(full);\n                    }\n                } catch {}\n            }\n        }\n        return files;\n    }\n\n    // ── FNV-1a Hash ─────────────────────────────────\n\n    private _hash(content: string): string {\n        let h = 2166136261;\n        for (let i = 0; i < content.length; i++) {\n            h ^= content.charCodeAt(i);\n            h = (h * 16777619) >>> 0;\n        }\n        return h.toString(16);\n    }\n}\n","/**\n * BrainBank — Tree-Sitter Code Chunker\n * \n * AST-aware code splitting using native tree-sitter bindings.\n * Extracts semantic blocks (functions, classes, methods, interfaces)\n * from the AST. Falls back to sliding window for unsupported languages.\n */\n\nimport { createRequire } from 'node:module';\nimport type { CodeChunk } from '../../types.ts';\nimport { GRAMMARS, type LangGrammar } from './grammars.ts';\n\nconst require = createRequire(import.meta.url);\n\n// ── Configuration ───────────────────────────────────\n\nexport interface ChunkerConfig {\n    /** Max lines per chunk. Default: 80 */\n    maxLines?: number;\n    /** Min lines for a detected block to be a chunk. Default: 3 */\n    minLines?: number;\n    /** Overlap between adjacent generic chunks. Default: 5 */\n    overlap?: number;\n}\n\n// ── CodeChunker ─────────────────────────────────────\n\nexport class CodeChunker {\n    private MAX: number;\n    private MIN: number;\n    private OVERLAP: number;\n    private _parser: any = null;\n    private _langCache = new Map<string, LangGrammar | null>();\n\n    constructor(config: ChunkerConfig = {}) {\n        this.MAX = config.maxLines ?? 80;\n        this.MIN = config.minLines ?? 3;\n        this.OVERLAP = config.overlap ?? 5;\n    }\n\n    /** Lazy-init tree-sitter parser. */\n    private _ensureParser(): any {\n        if (!this._parser) {\n            try {\n                const Parser = require('tree-sitter');\n                this._parser = new Parser();\n            } catch {\n                this._parser = false;  // Mark as unavailable\n            }\n        }\n        return this._parser || null;\n    }\n\n    /** Load a language grammar (cached). */\n    private _loadGrammar(language: string): LangGrammar | null {\n        if (this._langCache.has(language)) return this._langCache.get(language)!;\n\n        const factory = GRAMMARS[language];\n        const grammar = factory ? factory() : null;\n        this._langCache.set(language, grammar);\n        return grammar;\n    }\n\n    /**\n     * Split file content into semantic chunks using tree-sitter AST.\n     * Falls back to sliding window if grammar isn't available.\n     */\n    async chunk(filePath: string, content: string, language: string): Promise<CodeChunk[]> {\n        const lines = content.split('\\n');\n\n        // Small file → single chunk\n        if (lines.length <= this.MAX) {\n            return [{\n                filePath,\n                chunkType: 'file',\n                startLine: 1,\n                endLine: lines.length,\n                content: content.trim(),\n                language,\n            }];\n        }\n\n        // Try tree-sitter AST chunking\n        const parser = this._ensureParser();\n        const langConfig = this._loadGrammar(language);\n\n        if (parser && langConfig) {\n            try {\n                parser.setLanguage(langConfig.grammar);\n                const tree = parser.parse(content);\n                const chunks = this._extractChunks(filePath, lines, tree.rootNode, langConfig, language);\n\n                if (chunks.length > 0) {\n                    return chunks.filter(c => c.content.length > 20);\n                }\n            } catch {\n                // Tree-sitter failed — fall through to generic\n            }\n        }\n\n        // Fallback to sliding window\n        return this._chunkGeneric(filePath, lines, language);\n    }\n\n    /** Walk AST and extract top-level semantic blocks. */\n    private _extractChunks(\n        filePath: string, lines: string[],\n        rootNode: any, langConfig: LangGrammar, language: string,\n    ): CodeChunk[] {\n        const chunks: CodeChunk[] = [];\n        const seen = new Set<string>();\n\n        for (let i = 0; i < rootNode.childCount; i++) {\n            const child = rootNode.child(i);\n            this._processNode(filePath, lines, child, langConfig, language, chunks, seen);\n        }\n\n        return chunks;\n    }\n\n    /** Classify and process a single AST node. */\n    private _processNode(\n        filePath: string, lines: string[], node: any,\n        langConfig: LangGrammar, language: string,\n        chunks: CodeChunk[], seen: Set<string>,\n    ): void {\n        const type = node.type;\n\n        // Handle export_statement: process what it wraps\n        if (type === 'export_statement') {\n            for (let i = 0; i < node.childCount; i++) {\n                const child = node.child(i);\n                const category = this._categorize(child.type, langConfig);\n                if (category) {\n                    this._processDeclaration(filePath, lines, node, child, category, langConfig, language, chunks, seen);\n                    return;\n                }\n            }\n            // Export with no recognized declaration — chunk the whole thing if big enough\n            const nodeLines = node.endPosition.row - node.startPosition.row + 1;\n            if (nodeLines >= this.MIN) {\n                this._addChunk(filePath, lines, node, 'function', this._extractName(node), language, chunks, seen);\n            }\n            return;\n        }\n\n        // Python decorated definitions (@decorator + class/def)\n        if (type === 'decorated_definition') {\n            for (let i = 0; i < node.childCount; i++) {\n                const child = node.child(i);\n                const category = this._categorize(child.type, langConfig);\n                if (category) {\n                    this._processDeclaration(filePath, lines, node, child, category, langConfig, language, chunks, seen);\n                    return;\n                }\n            }\n        }\n\n        // Direct match\n        const category = this._categorize(type, langConfig);\n        if (category) {\n            this._processDeclaration(filePath, lines, node, node, category, langConfig, language, chunks, seen);\n        }\n    }\n\n    /** Check which category a node type belongs to. */\n    private _categorize(nodeType: string, langConfig: LangGrammar): string | null {\n        for (const [category, types] of Object.entries(langConfig.nodeTypes)) {\n            if (types && types.includes(nodeType)) return category;\n        }\n        return null;\n    }\n\n    /** Process a matched declaration: class → split by methods, else → chunk directly. */\n    private _processDeclaration(\n        filePath: string, lines: string[],\n        outerNode: any, innerNode: any, category: string,\n        langConfig: LangGrammar, language: string,\n        chunks: CodeChunk[], seen: Set<string>,\n    ): void {\n        const nodeLines = outerNode.endPosition.row - outerNode.startPosition.row + 1;\n        const name = this._extractName(innerNode);\n        const chunkType = this._toChunkType(category);\n\n        // Large class → split into methods\n        if ((category === 'class' || category === 'struct' || category === 'impl') && nodeLines > this.MAX) {\n            this._splitClassIntoMethods(filePath, lines, outerNode, innerNode, name, langConfig, language, chunks, seen);\n            return;\n        }\n\n        // Large non-class → split with overlap\n        if (nodeLines > this.MAX) {\n            chunks.push(...this._splitLargeBlock(filePath, lines,\n                outerNode.startPosition.row, outerNode.endPosition.row,\n                name, chunkType, language));\n            return;\n        }\n\n        // Normal-sized node\n        if (nodeLines >= this.MIN) {\n            this._addChunk(filePath, lines, outerNode, chunkType, name, language, chunks, seen);\n        }\n    }\n\n    /** Split a large class into individual method chunks. */\n    private _splitClassIntoMethods(\n        filePath: string, lines: string[],\n        outerNode: any, classNode: any, className: string,\n        langConfig: LangGrammar, language: string,\n        chunks: CodeChunk[], seen: Set<string>,\n    ): void {\n        // Find class body\n        const body = this._findClassBody(classNode);\n        if (!body) {\n            chunks.push(...this._splitLargeBlock(filePath, lines,\n                outerNode.startPosition.row, outerNode.endPosition.row,\n                className, 'class', language));\n            return;\n        }\n\n        // Get method node types\n        const methodTypes = new Set([\n            ...(langConfig.nodeTypes.function || []),\n            ...(langConfig.nodeTypes.method || []),\n        ]);\n\n        let methodsFound = false;\n        for (let i = 0; i < body.childCount; i++) {\n            const child = body.child(i);\n            let methodNode = child;\n\n            // Decorated methods\n            if (child.type === 'decorated_definition') {\n                for (let j = 0; j < child.childCount; j++) {\n                    if (methodTypes.has(child.child(j).type)) {\n                        methodNode = child.child(j);\n                        break;\n                    }\n                }\n            }\n\n            if (methodTypes.has(methodNode.type) || methodTypes.has(child.type)) {\n                const methodName = this._extractName(methodNode);\n                const nodeToChunk = child.type === 'decorated_definition' ? child : methodNode;\n                const methodLineCount = nodeToChunk.endPosition.row - nodeToChunk.startPosition.row + 1;\n\n                if (methodLineCount >= this.MIN) {\n                    methodsFound = true;\n                    const fullName = `${className}.${methodName}`;\n\n                    if (methodLineCount > this.MAX) {\n                        chunks.push(...this._splitLargeBlock(filePath, lines,\n                            nodeToChunk.startPosition.row, nodeToChunk.endPosition.row,\n                            fullName, 'method', language));\n                    } else {\n                        this._addChunk(filePath, lines, nodeToChunk, 'method', fullName, language, chunks, seen);\n                    }\n                }\n            }\n        }\n\n        // Fallback: no methods found → split the whole class\n        if (!methodsFound) {\n            chunks.push(...this._splitLargeBlock(filePath, lines,\n                outerNode.startPosition.row, outerNode.endPosition.row,\n                className, 'class', language));\n        }\n    }\n\n    /** Find the class body node. */\n    private _findClassBody(classNode: any): any | null {\n        const bodyTypes = ['class_body', 'block', 'declaration_list', 'body'];\n        for (let i = 0; i < classNode.childCount; i++) {\n            const child = classNode.child(i);\n            if (bodyTypes.includes(child.type)) return child;\n        }\n        return null;\n    }\n\n    /** Extract name from an AST node. */\n    private _extractName(node: any): string {\n        // Try childForFieldName('name')\n        if (typeof node.childForFieldName === 'function') {\n            const nameNode = node.childForFieldName('name');\n            if (nameNode) return nameNode.text;\n        }\n        // Try identifier children\n        for (let i = 0; i < node.namedChildCount; i++) {\n            const child = node.namedChild(i);\n            if (['identifier', 'type_identifier', 'property_identifier'].includes(child.type)) {\n                return child.text;\n            }\n        }\n        // For variable declarations, dig into declarators\n        if (node.type === 'lexical_declaration' || node.type === 'variable_declaration') {\n            for (let i = 0; i < node.namedChildCount; i++) {\n                const child = node.namedChild(i);\n                if (child.type === 'variable_declarator') {\n                    const nameNode = child.childForFieldName('name');\n                    if (nameNode) return nameNode.text;\n                }\n            }\n        }\n        return 'anonymous';\n    }\n\n    /** Map category to chunk type. */\n    private _toChunkType(category: string): string {\n        if (category === 'class' || category === 'struct' || category === 'impl') return 'class';\n        if (category === 'interface') return 'interface';\n        if (category === 'variable') return 'function';\n        return category;\n    }\n\n    /** Add a node as a chunk, avoiding duplicates. */\n    private _addChunk(\n        filePath: string, lines: string[], node: any,\n        chunkType: string, name: string, language: string,\n        chunks: CodeChunk[], seen: Set<string>,\n    ): void {\n        const start = node.startPosition.row;\n        const end = node.endPosition.row;\n        const key = `${start}-${end}`;\n        if (seen.has(key)) return;\n        seen.add(key);\n\n        const content = lines.slice(start, end + 1).join('\\n').trim();\n        if (content.length <= 20) return;\n\n        chunks.push({\n            filePath,\n            chunkType,\n            name,\n            startLine: start + 1,\n            endLine: end + 1,\n            content,\n            language,\n        });\n    }\n\n    // ── Fallback: Generic sliding window ────────────\n\n    private _chunkGeneric(filePath: string, lines: string[], language: string): CodeChunk[] {\n        const chunks: CodeChunk[] = [];\n        const step = Math.max(this.MAX - this.OVERLAP, 1);\n\n        for (let s = 0; s < lines.length; s += step) {\n            const e = Math.min(s + this.MAX, lines.length);\n            const content = lines.slice(s, e).join('\\n').trim();\n            if (content.length > 20) {\n                chunks.push({\n                    filePath,\n                    chunkType: 'block',\n                    startLine: s + 1,\n                    endLine: e,\n                    content,\n                    language,\n                });\n            }\n            if (e >= lines.length) break;\n        }\n\n        return chunks;\n    }\n\n    /** Split a large block into overlapping sub-chunks. */\n    private _splitLargeBlock(\n        filePath: string, lines: string[],\n        start: number, end: number,\n        name: string, type: string, language: string,\n    ): CodeChunk[] {\n        const chunks: CodeChunk[] = [];\n        const step = Math.max(this.MAX - this.OVERLAP, 1);\n        let part = 1;\n\n        for (let s = start; s <= end; s += step) {\n            const e = Math.min(s + this.MAX, end + 1);\n            const content = lines.slice(s, e).join('\\n').trim();\n            if (content.length > 20) {\n                chunks.push({\n                    filePath,\n                    chunkType: type,\n                    name: `${name} (part ${part++})`,\n                    startLine: s + 1,\n                    endLine: e,\n                    content,\n                    language,\n                });\n            }\n            if (e > end) break;\n        }\n\n        return chunks;\n    }\n}\n","/**\n * BrainBank — Tree-Sitter Grammar Registry\n *\n * Maps language names to their tree-sitter grammar packages\n * and the AST node types that represent semantic blocks.\n */\n\nimport { createRequire } from 'node:module';\n\nconst require = createRequire(import.meta.url);\n\n// ── Types ───────────────────────────────────────────\n\nexport interface LangGrammar {\n    grammar: any;\n    nodeTypes: {\n        class?: string[];\n        function?: string[];\n        interface?: string[];\n        variable?: string[];\n        method?: string[];\n        struct?: string[];\n        impl?: string[];\n    };\n}\n\n// ── Loader ──────────────────────────────────────────\n\n/** Try to require a grammar, return null if not installed. */\nfunction tryGrammar(pkg: string, nodeTypes: LangGrammar['nodeTypes'], accessor?: string): () => LangGrammar | null {\n    return () => {\n        try {\n            const mod = require(pkg);\n            return { grammar: accessor ? mod[accessor] : mod, nodeTypes };\n        } catch { return null; }\n    };\n}\n\n// ── Grammar Table ───────────────────────────────────\n\nexport const GRAMMARS: Record<string, () => LangGrammar | null> = {\n    // ── Web ──────────────────────────────────────────\n    typescript: tryGrammar('tree-sitter-typescript', {\n        class: ['class_declaration'],\n        interface: ['interface_declaration', 'type_alias_declaration'],\n        function: ['function_declaration', 'method_definition'],\n        variable: ['lexical_declaration'],\n    }, 'typescript'),\n    javascript: tryGrammar('tree-sitter-javascript', {\n        class: ['class_declaration'],\n        function: ['function_declaration', 'method_definition'],\n        variable: ['lexical_declaration'],\n    }),\n    html: tryGrammar('tree-sitter-html', {}),\n    css: tryGrammar('tree-sitter-css', {}),\n\n    // ── Systems ──────────────────────────────────────\n    go: tryGrammar('tree-sitter-go', {\n        function: ['function_declaration', 'method_declaration'],\n        struct: ['type_declaration'],\n    }),\n    rust: tryGrammar('tree-sitter-rust', {\n        function: ['function_item'],\n        struct: ['struct_item'],\n        impl: ['impl_item'],\n    }),\n    c: tryGrammar('tree-sitter-c', {\n        function: ['function_definition'],\n        struct: ['struct_specifier'],\n    }),\n    cpp: tryGrammar('tree-sitter-cpp', {\n        class: ['class_specifier'],\n        function: ['function_definition'],\n    }),\n    swift: tryGrammar('tree-sitter-swift', {\n        class: ['class_declaration'],\n        function: ['function_declaration'],\n        struct: ['struct_declaration'],\n    }),\n\n    // ── JVM ──────────────────────────────────────────\n    java: tryGrammar('tree-sitter-java', {\n        class: ['class_declaration'],\n        interface: ['interface_declaration'],\n        method: ['method_declaration'],\n    }),\n    kotlin: tryGrammar('tree-sitter-kotlin', {\n        class: ['class_declaration'],\n        function: ['function_declaration'],\n    }),\n    scala: tryGrammar('tree-sitter-scala', {\n        class: ['class_definition'],\n        function: ['function_definition'],\n    }),\n\n    // ── Scripting ────────────────────────────────────\n    python: tryGrammar('tree-sitter-python', {\n        class: ['class_definition'],\n        function: ['function_definition'],\n    }),\n    ruby: tryGrammar('tree-sitter-ruby', {\n        class: ['class'],\n        method: ['method', 'singleton_method'],\n    }),\n    php: tryGrammar('tree-sitter-php', {\n        class: ['class_declaration'],\n        function: ['function_definition', 'method_declaration'],\n    }, 'php'),\n    lua: tryGrammar('tree-sitter-lua', {\n        function: ['function_declaration'],\n    }),\n    bash: tryGrammar('tree-sitter-bash', {\n        function: ['function_definition'],\n    }),\n    elixir: tryGrammar('tree-sitter-elixir', {\n        function: ['call'],  // defmodule, def, defp\n    }),\n\n    // ── .NET ─────────────────────────────────────────\n    c_sharp: tryGrammar('tree-sitter-c-sharp', {\n        class: ['class_declaration'],\n        interface: ['interface_declaration'],\n        method: ['method_declaration'],\n    }),\n};\n","/**\n * BrainBank — Language Registry\n * \n * Supported file extensions, language mappings, and ignore lists.\n * Controls which files get indexed and how they're chunked.\n */\n\n// ── Supported Extensions ────────────────────────────\n\nexport const SUPPORTED_EXTENSIONS: Record<string, string> = {\n    // TypeScript / JavaScript\n    '.ts': 'typescript',\n    '.tsx': 'typescript',\n    '.js': 'javascript',\n    '.jsx': 'javascript',\n    '.mjs': 'javascript',\n    '.cjs': 'javascript',\n\n    // Systems\n    '.go': 'go',\n    '.rs': 'rust',\n    '.cpp': 'cpp',\n    '.cc': 'cpp',\n    '.c': 'c',\n    '.h': 'c',\n    '.hpp': 'cpp',\n\n    // JVM\n    '.java': 'java',\n    '.kt': 'kotlin',\n    '.scala': 'scala',\n\n    // Scripting\n    '.py': 'python',\n    '.rb': 'ruby',\n    '.php': 'php',\n    '.lua': 'lua',\n    '.sh': 'bash',\n    '.bash': 'bash',\n    '.zsh': 'bash',\n\n    // Web\n    '.html': 'html',\n    '.css': 'css',\n    '.scss': 'scss',\n    '.less': 'less',\n    '.svelte': 'svelte',\n    '.vue': 'vue',\n\n    // Data / Config\n    '.json': 'json',\n    '.yaml': 'yaml',\n    '.yml': 'yaml',\n    '.toml': 'toml',\n    '.xml': 'xml',\n    '.graphql': 'graphql',\n    '.gql': 'graphql',\n\n    // Docs\n    '.md': 'markdown',\n    '.mdx': 'markdown',\n\n    // Database\n    '.sql': 'sql',\n    '.prisma': 'prisma',\n\n    // Other\n    '.swift': 'swift',\n    '.dart': 'dart',\n    '.r': 'r',\n    '.ex': 'elixir',\n    '.exs': 'elixir',\n    '.erl': 'erlang',\n    '.zig': 'zig',\n};\n\n// ── Ignore Directories ──────────────────────────────\n\nexport const IGNORE_DIRS = new Set([\n    // Package managers\n    'node_modules',\n    'bower_components',\n    '.pnpm',\n\n    // Build output\n    'dist',\n    'build',\n    'out',\n    '.next',\n    '.nuxt',\n    '.output',\n    '.svelte-kit',\n\n    // Version control\n    '.git',\n    '.hg',\n    '.svn',\n\n    // IDE / Editor\n    '.idea',\n    '.vscode',\n\n    // Runtime / Cache\n    '__pycache__',\n    '.pytest_cache',\n    'venv',\n    '.venv',\n    '.env',\n    '.tox',\n\n    // Coverage / Test artifacts\n    'coverage',\n    '.nyc_output',\n    'htmlcov',\n\n    // Compiled\n    'target',     // Rust, Java\n    '.cargo',\n    'vendor',     // Go, PHP\n\n    // AI / Model cache\n    '.model-cache',\n    '.brainbank',\n\n    // OS\n    '.DS_Store',\n]);\n\n// ── Ignore Files ────────────────────────────────────\n\nexport const IGNORE_FILES = new Set([\n    'package-lock.json',\n    'yarn.lock',\n    'pnpm-lock.yaml',\n    'bun.lockb',\n    'Cargo.lock',\n    'Gemfile.lock',\n    'poetry.lock',\n    'composer.lock',\n    'go.sum',\n]);\n\n// ── Helpers 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package/dist/{chunk-Z5SU54HP.js → chunk-X6645UVR.js}

@@ -1,11 +1,11 @@
 import {
   cosineSimilarity
-} from "./chunk-2P3EGY6S.js";
+} from "./chunk-QNHBCOKB.js";
 import {
   __name
 } from "./chunk-7QVYU63E.js";
 
-// src/memory/pattern-store.ts
+// src/memory/store.ts
 var PatternStore = class {
   static {
     __name(this, "PatternStore");
@@ -168,4 +168,4 @@ export {
   PatternStore,
   Consolidator
 };
-//# sourceMappingURL=chunk-Z5SU54HP.js.map
+//# sourceMappingURL=chunk-X6645UVR.js.map

package/dist/chunk-X6645UVR.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/memory/store.ts","../src/memory/consolidator.ts"],"sourcesContent":["/**\n * BrainBank — Pattern Store (Agent Memory)\n * \n * Stores what the agent learned from past tasks.\n * Each pattern records task, approach, and success rate.\n * Searchable by semantic similarity via HNSW.\n */\n\nimport type { Database } from '../db/database.ts';\nimport type { EmbeddingProvider, LearningPattern } from '../types.ts';\nimport type { HNSWIndex } from '../providers/vector/hnsw.ts';\n\nexport interface PatternStoreDeps {\n    db: Database;\n    hnsw: HNSWIndex;\n    vectorCache: Map<number, Float32Array>;\n    embedding: EmbeddingProvider;\n}\n\nexport class PatternStore {\n    private _deps: PatternStoreDeps;\n\n    constructor(deps: PatternStoreDeps) {\n        this._deps = deps;\n    }\n\n    /**\n     * Store a learned pattern.\n     * Returns the pattern ID.\n     */\n    async learn(pattern: LearningPattern): Promise<number> {\n        const result = this._deps.db.prepare(`\n            INSERT INTO memory_patterns (task_type, task, approach, outcome, success_rate, critique, tokens_used, latency_ms)\n            VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n        `).run(\n            pattern.taskType,\n            pattern.task,\n            pattern.approach,\n            pattern.outcome ?? null,\n            pattern.successRate,\n            pattern.critique ?? null,\n            pattern.tokensUsed ?? null,\n            pattern.latencyMs ?? null,\n        );\n\n        const id = Number(result.lastInsertRowid);\n\n        // Embed and store vector\n        const text = `${pattern.taskType} ${pattern.task} ${pattern.approach}`;\n        const vec = await this._deps.embedding.embed(text);\n\n        this._deps.db.prepare(\n            'INSERT INTO memory_vectors (pattern_id, embedding) VALUES (?, ?)'\n        ).run(id, Buffer.from(vec.buffer));\n\n        this._deps.hnsw.add(vec, id);\n        this._deps.vectorCache.set(id, vec);\n\n        return id;\n    }\n\n    /**\n     * Search for similar successful patterns.\n     * Filters by minimum success rate.\n     */\n    async search(query: string, k: number = 4, minSuccess: number = 0.5): Promise<(LearningPattern & { score: number })[]> {\n        if (this._deps.hnsw.size === 0) return [];\n\n        const vec = await this._deps.embedding.embed(query);\n        const hits = this._deps.hnsw.search(vec, k * 2);\n\n        if (hits.length === 0) return [];\n\n        const ids = hits.map(h => h.id);\n        const scoreMap = new Map(hits.map(h => [h.id, h.score]));\n\n        const placeholders = ids.map(() => '?').join(',');\n        const rows = this._deps.db.prepare(\n            `SELECT * FROM memory_patterns WHERE id IN (${placeholders}) AND success_rate >= ?`\n        ).all(...ids, minSuccess) as any[];\n\n        return rows\n            .map(r => ({\n                id: r.id,\n                taskType: r.task_type,\n                task: r.task,\n                approach: r.approach,\n                outcome: r.outcome,\n                successRate: r.success_rate,\n                critique: r.critique,\n                tokensUsed: r.tokens_used,\n                latencyMs: r.latency_ms,\n                score: scoreMap.get(r.id) ?? 0,\n            }))\n            .sort((a, b) => b.score - a.score)\n            .slice(0, k);\n    }\n\n    /**\n     * Get all patterns for a specific task type.\n     */\n    getByTaskType(taskType: string, limit: number = 20): LearningPattern[] {\n        const rows = this._deps.db.prepare(\n            `SELECT * FROM memory_patterns WHERE task_type = ? ORDER BY success_rate DESC LIMIT ?`\n        ).all(taskType, limit) as any[];\n\n        return rows.map(r => ({\n            id: r.id,\n            taskType: r.task_type,\n            task: r.task,\n            approach: r.approach,\n            outcome: r.outcome,\n            successRate: r.success_rate,\n            critique: r.critique,\n            tokensUsed: r.tokens_used,\n            latencyMs: r.latency_ms,\n        }));\n    }\n\n    /** Total number of stored patterns. */\n    get count(): number {\n        return (this._deps.db.prepare('SELECT COUNT(*) as c FROM memory_patterns').get() as any).c;\n    }\n}\n","/**\n * BrainBank — Consolidator\n * \n * Maintenance operations for the agent memory:\n *   - prune: remove old failed patterns\n *   - dedup: merge near-duplicate patterns (cosine > 0.95)\n *   - consolidate: run both\n */\n\nimport type { Database } from '../db/database.ts';\nimport { cosineSimilarity } from '../lib/math.ts';\n\nexport class Consolidator {\n    constructor(\n        private _db: Database,\n        private _vectorCache: Map<number, Float32Array>,\n    ) {}\n\n    /**\n     * Remove old failed patterns.\n     * Criteria: success_rate < 0.3 AND created > 90 days ago.\n     */\n    prune(maxAgeDays: number = 90, minSuccess: number = 0.3): number {\n        const cutoff = Math.floor(Date.now() / 1000) - maxAgeDays * 86400;\n        const result = this._db.prepare(\n            'DELETE FROM memory_patterns WHERE success_rate < ? AND created_at < ?'\n        ).run(minSuccess, cutoff);\n        return result.changes;\n    }\n\n    /**\n     * Merge near-duplicate patterns.\n     * Keeps the one with higher success_rate.\n     * Threshold: cosine similarity > 0.95.\n     */\n    dedup(threshold: number = 0.95): number {\n        const entries = Array.from(this._vectorCache.entries());\n        const toDelete = new Set<number>();\n\n        for (let i = 0; i < entries.length; i++) {\n            if (toDelete.has(entries[i][0])) continue;\n\n            for (let j = i + 1; j < entries.length; j++) {\n                if (toDelete.has(entries[j][0])) continue;\n\n                const sim = cosineSimilarity(entries[i][1], entries[j][1]);\n                if (sim > threshold) {\n                    // Keep the one with higher success rate\n                    const pi = this._db.prepare(\n                        'SELECT success_rate FROM memory_patterns WHERE id = ?'\n                    ).get(entries[i][0]) as any;\n                    const pj = this._db.prepare(\n                        'SELECT success_rate FROM memory_patterns WHERE id = ?'\n                    ).get(entries[j][0]) as any;\n\n                    if (pi && pj) {\n                        const deleteId = pi.success_rate >= pj.success_rate\n                            ? entries[j][0]\n                            : entries[i][0];\n                        toDelete.add(deleteId);\n                    }\n                }\n            }\n        }\n\n        if (toDelete.size > 0) {\n            const ids = Array.from(toDelete);\n            const placeholders = ids.map(() => '?').join(',');\n            this._db.prepare(\n                `DELETE FROM memory_patterns WHERE id IN (${placeholders})`\n            ).run(...ids);\n\n            // Clean vector cache\n            for (const id of ids) {\n                this._vectorCache.delete(id);\n            }\n        }\n\n        return toDelete.size;\n    }\n\n    /**\n     * Run full consolidation: prune + dedup.\n     */\n    consolidate(): { pruned: number; deduped: number } {\n        const pruned = this.prune();\n        const deduped = this.dedup();\n        return { pruned, deduped };\n    }\n}\n"],"mappings":";;;;;;;;AAmBO,IAAM,eAAN,MAAmB;AAAA,EAnB1B,OAmB0B;AAAA;AAAA;AAAA,EACd;AAAA,EAER,YAAY,MAAwB;AAChC,SAAK,QAAQ;AAAA,EACjB;AAAA;AAAA;AAAA;AAAA;AAAA,EAMA,MAAM,MAAM,SAA2C;AACnD,UAAM,SAAS,KAAK,MAAM,GAAG,QAAQ;AAAA;AAAA;AAAA,SAGpC,EAAE;AAAA,MACC,QAAQ;AAAA,MACR,QAAQ;AAAA,MACR,QAAQ;AAAA,MACR,QAAQ,WAAW;AAAA,MACnB,QAAQ;AAAA,MACR,QAAQ,YAAY;AAAA,MACpB,QAAQ,cAAc;AAAA,MACtB,QAAQ,aAAa;AAAA,IACzB;AAEA,UAAM,KAAK,OAAO,OAAO,eAAe;AAGxC,UAAM,OAAO,GAAG,QAAQ,QAAQ,IAAI,QAAQ,IAAI,IAAI,QAAQ,QAAQ;AACpE,UAAM,MAAM,MAAM,KAAK,MAAM,UAAU,MAAM,IAAI;AAEjD,SAAK,MAAM,GAAG;AAAA,MACV;AAAA,IACJ,EAAE,IAAI,IAAI,OAAO,KAAK,IAAI,MAAM,CAAC;AAEjC,SAAK,MAAM,KAAK,IAAI,KAAK,EAAE;AAC3B,SAAK,MAAM,YAAY,IAAI,IAAI,GAAG;AAElC,WAAO;AAAA,EACX;AAAA;AAAA;AAAA;AAAA;AAAA,EAMA,MAAM,OAAO,OAAe,IAAY,GAAG,aAAqB,KAAuD;AACnH,QAAI,KAAK,MAAM,KAAK,SAAS,EAAG,QAAO,CAAC;AAExC,UAAM,MAAM,MAAM,KAAK,MAAM,UAAU,MAAM,KAAK;AAClD,UAAM,OAAO,KAAK,MAAM,KAAK,OAAO,KAAK,IAAI,CAAC;AAE9C,QAAI,KAAK,WAAW,EAAG,QAAO,CAAC;AAE/B,UAAM,MAAM,KAAK,IAAI,OAAK,EAAE,EAAE;AAC9B,UAAM,WAAW,IAAI,IAAI,KAAK,IAAI,OAAK,CAAC,EAAE,IAAI,EAAE,KAAK,CAAC,CAAC;AAEvD,UAAM,eAAe,IAAI,IAAI,MAAM,GAAG,EAAE,KAAK,GAAG;AAChD,UAAM,OAAO,KAAK,MAAM,GAAG;AAAA,MACvB,8CAA8C,YAAY;AAAA,IAC9D,EAAE,IAAI,GAAG,KAAK,UAAU;AAExB,WAAO,KACF,IAAI,QAAM;AAAA,MACP,IAAI,EAAE;AAAA,MACN,UAAU,EAAE;AAAA,MACZ,MAAM,EAAE;AAAA,MACR,UAAU,EAAE;AAAA,MACZ,SAAS,EAAE;AAAA,MACX,aAAa,EAAE;AAAA,MACf,UAAU,EAAE;AAAA,MACZ,YAAY,EAAE;AAAA,MACd,WAAW,EAAE;AAAA,MACb,OAAO,SAAS,IAAI,EAAE,EAAE,KAAK;AAAA,IACjC,EAAE,EACD,KAAK,CAAC,GAAG,MAAM,EAAE,QAAQ,EAAE,KAAK,EAChC,MAAM,GAAG,CAAC;AAAA,EACnB;AAAA;AAAA;AAAA;AAAA,EAKA,cAAc,UAAkB,QAAgB,IAAuB;AACnE,UAAM,OAAO,KAAK,MAAM,GAAG;AAAA,MACvB;AAAA,IACJ,EAAE,IAAI,UAAU,KAAK;AAErB,WAAO,KAAK,IAAI,QAAM;AAAA,MAClB,IAAI,EAAE;AAAA,MACN,UAAU,EAAE;AAAA,MACZ,MAAM,EAAE;AAAA,MACR,UAAU,EAAE;AAAA,MACZ,SAAS,EAAE;AAAA,MACX,aAAa,EAAE;AAAA,MACf,UAAU,EAAE;AAAA,MACZ,YAAY,EAAE;AAAA,MACd,WAAW,EAAE;AAAA,IACjB,EAAE;AAAA,EACN;AAAA;AAAA,EAGA,IAAI,QAAgB;AAChB,WAAQ,KAAK,MAAM,GAAG,QAAQ,2CAA2C,EAAE,IAAI,EAAU;AAAA,EAC7F;AACJ;;;AC/GO,IAAM,eAAN,MAAmB;AAAA,EACtB,YACY,KACA,cACV;AAFU;AACA;AAAA,EACT;AAAA,EAhBP,OAY0B;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,EAUtB,MAAM,aAAqB,IAAI,aAAqB,KAAa;AAC7D,UAAM,SAAS,KAAK,MAAM,KAAK,IAAI,IAAI,GAAI,IAAI,aAAa;AAC5D,UAAM,SAAS,KAAK,IAAI;AAAA,MACpB;AAAA,IACJ,EAAE,IAAI,YAAY,MAAM;AACxB,WAAO,OAAO;AAAA,EAClB;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,EAOA,MAAM,YAAoB,MAAc;AACpC,UAAM,UAAU,MAAM,KAAK,KAAK,aAAa,QAAQ,CAAC;AACtD,UAAM,WAAW,oBAAI,IAAY;AAEjC,aAAS,IAAI,GAAG,IAAI,QAAQ,QAAQ,KAAK;AACrC,UAAI,SAAS,IAAI,QAAQ,CAAC,EAAE,CAAC,CAAC,EAAG;AAEjC,eAAS,IAAI,IAAI,GAAG,IAAI,QAAQ,QAAQ,KAAK;AACzC,YAAI,SAAS,IAAI,QAAQ,CAAC,EAAE,CAAC,CAAC,EAAG;AAEjC,cAAM,MAAM,iBAAiB,QAAQ,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAC;AACzD,YAAI,MAAM,WAAW;AAEjB,gBAAM,KAAK,KAAK,IAAI;AAAA,YAChB;AAAA,UACJ,EAAE,IAAI,QAAQ,CAAC,EAAE,CAAC,CAAC;AACnB,gBAAM,KAAK,KAAK,IAAI;AAAA,YAChB;AAAA,UACJ,EAAE,IAAI,QAAQ,CAAC,EAAE,CAAC,CAAC;AAEnB,cAAI,MAAM,IAAI;AACV,kBAAM,WAAW,GAAG,gBAAgB,GAAG,eACjC,QAAQ,CAAC,EAAE,CAAC,IACZ,QAAQ,CAAC,EAAE,CAAC;AAClB,qBAAS,IAAI,QAAQ;AAAA,UACzB;AAAA,QACJ;AAAA,MACJ;AAAA,IACJ;AAEA,QAAI,SAAS,OAAO,GAAG;AACnB,YAAM,MAAM,MAAM,KAAK,QAAQ;AAC/B,YAAM,eAAe,IAAI,IAAI,MAAM,GAAG,EAAE,KAAK,GAAG;AAChD,WAAK,IAAI;AAAA,QACL,4CAA4C,YAAY;AAAA,MAC5D,EAAE,IAAI,GAAG,GAAG;AAGZ,iBAAW,MAAM,KAAK;AAClB,aAAK,aAAa,OAAO,EAAE;AAAA,MAC/B;AAAA,IACJ;AAEA,WAAO,SAAS;AAAA,EACpB;AAAA;AAAA;AAAA;AAAA,EAKA,cAAmD;AAC/C,UAAM,SAAS,KAAK,MAAM;AAC1B,UAAM,UAAU,KAAK,MAAM;AAC3B,WAAO,EAAE,QAAQ,QAAQ;AAAA,EAC7B;AACJ;","names":[]}

package/dist/cli.js

@@ -1,25 +1,23 @@
 #!/usr/bin/env node
 import {
   BrainBank
-} from "./chunk-YGSEUWLV.js";
+} from "./chunk-6MFTQV3O.js";
 import {
   code
-} from "./chunk-EDKSKLX4.js";
+} from "./chunk-WR4WXKJT.js";
 import {
   git
-} from "./chunk-N6ZMBFDE.js";
+} from "./chunk-7JCEW7LT.js";
 import {
   docs
-} from "./chunk-GOUBW7UA.js";
-import "./chunk-4ZKBQ33J.js";
-import "./chunk-2P3EGY6S.js";
+} from "./chunk-F6SJ3U4H.js";
+import "./chunk-V4UJKXPK.js";
+import "./chunk-QNHBCOKB.js";
 import {
   __name
 } from "./chunk-7QVYU63E.js";
 
-// src/integrations/cli.ts
-import * as path from "path";
-import * as fs from "fs";
+// src/cli/utils.ts
 var c = {
   green: /* @__PURE__ */ __name((s) => `\x1B[32m${s}\x1B[0m`, "green"),
   red: /* @__PURE__ */ __name((s) => `\x1B[31m${s}\x1B[0m`, "red"),
@@ -30,8 +28,6 @@ var c = {
   magenta: /* @__PURE__ */ __name((s) => `\x1B[35m${s}\x1B[0m`, "magenta")
 };
 var args = process.argv.slice(2);
-var command = args[0];
-var subcommand = args[1];
 function getFlag(name) {
   const idx = args.indexOf(`--${name}`);
   return idx >= 0 ? args[idx + 1] : void 0;
@@ -41,11 +37,46 @@ function hasFlag(name) {
   return args.includes(`--${name}`);
 }
 __name(hasFlag, "hasFlag");
-var CONFIG_NAMES = [
-  "config.ts",
-  "config.js",
-  "config.mjs"
-];
+function printResults(results) {
+  if (results.length === 0) {
+    console.log(c.yellow("  No results found."));
+    return;
+  }
+  for (const r of results) {
+    const score = Math.round(r.score * 100);
+    if (r.type === "code") {
+      const m = r.metadata;
+      console.log(
+        `${c.green(`[CODE ${score}%]`)} ${c.bold(r.filePath)} \u2014 ${m.name || m.chunkType} ${c.dim(`L${m.startLine}-${m.endLine}`)}`
+      );
+      console.log(c.dim(r.content.split("\n").slice(0, 5).join("\n")));
+      console.log("");
+    } else if (r.type === "commit") {
+      const m = r.metadata;
+      console.log(
+        `${c.cyan(`[COMMIT ${score}%]`)} ${c.bold(m.shortHash)} ${r.content} ${c.dim(`(${m.author})`)}`
+      );
+      if (m.files?.length) console.log(c.dim(`  Files: ${m.files.slice(0, 4).join(", ")}`));
+      console.log("");
+    } else if (r.type === "document") {
+      const ctx = r.context ? ` \u2014 ${c.dim(r.context)}` : "";
+      console.log(
+        `${c.magenta(`[DOC ${score}%]`)} ${c.bold(r.filePath)} [${r.metadata.collection}]${ctx}`
+      );
+      console.log(c.dim(r.content.split("\n").slice(0, 4).join("\n")));
+      console.log("");
+    }
+  }
+}
+__name(printResults, "printResults");
+
+// src/cli/commands/index-cmd.ts
+import * as path2 from "path";
+
+// src/cli/factory.ts
+import * as path from "path";
+import * as fs from "fs";
+var CONFIG_NAMES = ["config.ts", "config.js", "config.mjs"];
 var INDEXER_EXTENSIONS = [".ts", ".js", ".mjs"];
 var _configCache = void 0;
 var _folderIndexersCache = void 0;
@@ -98,6 +129,17 @@ async function discoverFolderIndexers() {
   return indexers;
 }
 __name(discoverFolderIndexers, "discoverFolderIndexers");
+function detectGitSubdirs(parentPath) {
+  try {
+    const entries = fs.readdirSync(parentPath, { withFileTypes: true });
+    return entries.filter(
+      (e) => e.isDirectory() && !e.name.startsWith(".") && !e.name.startsWith("node_modules") && fs.existsSync(path.join(parentPath, e.name, ".git"))
+    ).map((e) => ({ name: e.name, path: path.join(parentPath, e.name) }));
+  } catch {
+    return [];
+  }
+}
+__name(detectGitSubdirs, "detectGitSubdirs");
 async function createBrain(repoPath) {
   const rp = repoPath ?? getFlag("repo") ?? ".";
   const config = await loadConfig();
@@ -110,7 +152,7 @@ async function createBrain(repoPath) {
   }
   const embeddingEnv = process.env.BRAINBANK_EMBEDDING;
   if (embeddingEnv === "openai") {
-    const { OpenAIEmbedding } = await import("./openai-PCTYLOWI.js");
+    const { OpenAIEmbedding } = await import("./openai-CYDMYX7X.js");
     const provider = new OpenAIEmbedding();
     brainOpts.embeddingProvider = provider;
     brainOpts.embeddingDims = provider.dims;
@@ -146,27 +188,42 @@ async function createBrain(repoPath) {
   return brain;
 }
 __name(createBrain, "createBrain");
-function detectGitSubdirs(parentPath) {
-  try {
-    const entries = fs.readdirSync(parentPath, { withFileTypes: true });
-    return entries.filter(
-      (e) => e.isDirectory() && !e.name.startsWith(".") && !e.name.startsWith("node_modules") && fs.existsSync(path.join(parentPath, e.name, ".git"))
-    ).map((e) => ({ name: e.name, path: path.join(parentPath, e.name) }));
-  } catch {
-    return [];
-  }
-}
-__name(detectGitSubdirs, "detectGitSubdirs");
+
+// src/cli/commands/index-cmd.ts
 async function cmdIndex() {
   const repoPath = args[1] || ".";
   const force = hasFlag("force");
   const depth = parseInt(getFlag("depth") || "500", 10);
+  const onlyRaw = getFlag("only");
+  const docsPath = getFlag("docs");
+  const modules = onlyRaw ? onlyRaw.split(",").map((s) => s.trim()) : void 0;
+  if (docsPath && modules && !modules.includes("docs")) {
+    modules.push("docs");
+  }
   console.log(c.bold("\n\u2501\u2501\u2501 BrainBank Index \u2501\u2501\u2501"));
   console.log(c.dim(`  Repo: ${repoPath}`));
   console.log(c.dim(`  Force: ${force}`));
   console.log(c.dim(`  Git depth: ${depth}`));
+  if (modules) console.log(c.dim(`  Modules: ${modules.join(", ")}`));
+  if (docsPath) console.log(c.dim(`  Docs path: ${docsPath}`));
   const brain = await createBrain(repoPath);
+  if (docsPath) {
+    const absDocsPath = path2.resolve(docsPath);
+    const collName = path2.basename(absDocsPath);
+    try {
+      await brain.addCollection({
+        name: collName,
+        path: absDocsPath,
+        pattern: "**/*.md",
+        ignore: ["deprecated/**", "node_modules/**"]
+      });
+      console.log(c.dim(`  Registered docs collection: ${collName}`));
+    } catch {
+      console.log(c.yellow(`  Warning: docs module not loaded, skipping --docs`));
+    }
+  }
   const result = await brain.index({
+    modules,
     forceReindex: force,
     gitDepth: depth,
     onProgress: /* @__PURE__ */ __name((stage, msg) => {
@@ -180,36 +237,44 @@ async function cmdIndex() {
   if (result.git) {
     console.log(`  ${c.green("Git")}:  ${result.git.indexed} indexed, ${result.git.skipped} skipped`);
   }
+  if (result.docs) {
+    for (const [name, stat] of Object.entries(result.docs)) {
+      console.log(`  ${c.green("Docs")}: [${name}] ${stat.indexed} indexed, ${stat.skipped} skipped, ${stat.chunks} chunks`);
+    }
+  }
   const stats = brain.stats();
   console.log(`
   ${c.bold("Totals")}:`);
   if (stats.code) console.log(`    Code chunks:  ${stats.code.chunks}`);
   if (stats.git) console.log(`    Git commits:  ${stats.git.commits}`);
   if (stats.git) console.log(`    Co-edit pairs: ${stats.git.coEdits}`);
+  if (stats.documents) console.log(`    Documents:    ${stats.documents.documents}`);
   brain.close();
 }
 __name(cmdIndex, "cmdIndex");
+
+// src/cli/commands/collection.ts
 async function cmdCollection() {
   const sub = args[1];
   if (sub === "add") {
-    const path2 = args[2];
+    const path3 = args[2];
     const name = getFlag("name");
     const pattern = getFlag("pattern") ?? "**/*.md";
     const context = getFlag("context");
     const ignoreRaw = getFlag("ignore");
-    if (!path2 || !name) {
+    if (!path3 || !name) {
       console.log(c.red('Usage: brainbank collection add <path> --name <name> [--pattern "**/*.md"] [--ignore "glob"] [--context "description"]'));
       process.exit(1);
     }
     const brain = await createBrain();
     await brain.addCollection({
       name,
-      path: path2,
+      path: path3,
       pattern,
       ignore: ignoreRaw ? ignoreRaw.split(",") : [],
       context: context ?? void 0
     });
-    console.log(c.green(`\u2713 Collection '${name}' added: ${path2} (${pattern})`));
+    console.log(c.green(`\u2713 Collection '${name}' added: ${path3} (${pattern})`));
     if (context) console.log(c.dim(`  Context: ${context}`));
     brain.close();
     return;
@@ -247,6 +312,8 @@ async function cmdCollection() {
   process.exit(1);
 }
 __name(cmdCollection, "cmdCollection");
+
+// src/cli/commands/kv.ts
 async function cmdKv() {
   const sub = args[1];
   if (sub === "add") {
@@ -367,6 +434,8 @@ async function cmdKv() {
   process.exit(1);
 }
 __name(cmdKv, "cmdKv");
+
+// src/cli/commands/docs.ts
 async function cmdDocs() {
   const collection = getFlag("collection");
   const brain = await createBrain();
@@ -413,51 +482,8 @@ async function cmdDocSearch() {
   brain.close();
 }
 __name(cmdDocSearch, "cmdDocSearch");
-async function cmdContext() {
-  const sub = args[1];
-  if (sub === "add") {
-    const collection = args[2];
-    const path2 = args[3];
-    const desc = args.slice(4).join(" ");
-    if (!collection || !path2 || !desc) {
-      console.log(c.red("Usage: brainbank context add <collection> <path> <description>"));
-      process.exit(1);
-    }
-    const brain2 = await createBrain();
-    await brain2.initialize();
-    brain2.addContext(collection, path2, desc);
-    console.log(c.green(`\u2713 Context added: ${collection}:${path2} \u2192 "${desc}"`));
-    brain2.close();
-    return;
-  }
-  if (sub === "list") {
-    const brain2 = await createBrain();
-    await brain2.initialize();
-    const contexts = brain2.listContexts();
-    if (contexts.length === 0) {
-      console.log(c.yellow("  No contexts configured."));
-    } else {
-      console.log(c.bold("\n\u2501\u2501\u2501 Contexts \u2501\u2501\u2501\n"));
-      for (const ctx of contexts) {
-        console.log(`  ${c.cyan(ctx.collection)}:${ctx.path} \u2192 ${c.dim(ctx.context)}`);
-      }
-    }
-    brain2.close();
-    return;
-  }
-  const task = args.slice(1).join(" ");
-  if (!task) {
-    console.log(c.red("Usage: brainbank context <task description>"));
-    console.log(c.dim("       brainbank context add <collection> <path> <description>"));
-    console.log(c.dim("       brainbank context list"));
-    process.exit(1);
-  }
-  const brain = await createBrain();
-  const context = await brain.getContext(task);
-  console.log(context);
-  brain.close();
-}
-__name(cmdContext, "cmdContext");
+
+// src/cli/commands/search.ts
 async function cmdSearch() {
   const query = args.slice(1).join(" ");
   if (!query) {
@@ -506,34 +532,55 @@ async function cmdKeywordSearch() {
   brain.close();
 }
 __name(cmdKeywordSearch, "cmdKeywordSearch");
-function printResults(results) {
-  if (results.length === 0) {
-    console.log(c.yellow("  No results found."));
+
+// src/cli/commands/context.ts
+async function cmdContext() {
+  const sub = args[1];
+  if (sub === "add") {
+    const collection = args[2];
+    const path3 = args[3];
+    const desc = args.slice(4).join(" ");
+    if (!collection || !path3 || !desc) {
+      console.log(c.red("Usage: brainbank context add <collection> <path> <description>"));
+      process.exit(1);
+    }
+    const brain2 = await createBrain();
+    await brain2.initialize();
+    brain2.addContext(collection, path3, desc);
+    console.log(c.green(`\u2713 Context added: ${collection}:${path3} \u2192 "${desc}"`));
+    brain2.close();
     return;
   }
-  for (const r of results) {
-    const score = Math.round(r.score * 100);
-    if (r.type === "code") {
-      const m = r.metadata;
-      console.log(`${c.green(`[CODE ${score}%]`)} ${c.bold(r.filePath)} \u2014 ${m.name || m.chunkType} ${c.dim(`L${m.startLine}-${m.endLine}`)}`);
-      const preview = r.content.split("\n").slice(0, 5).join("\n");
-      console.log(c.dim(preview));
-      console.log("");
-    } else if (r.type === "commit") {
-      const m = r.metadata;
-      console.log(`${c.cyan(`[COMMIT ${score}%]`)} ${c.bold(m.shortHash)} ${r.content} ${c.dim(`(${m.author})`)}`);
-      if (m.files?.length) console.log(c.dim(`  Files: ${m.files.slice(0, 4).join(", ")}`));
-      console.log("");
-    } else if (r.type === "document") {
-      const ctx = r.context ? ` \u2014 ${c.dim(r.context)}` : "";
-      console.log(`${c.magenta(`[DOC ${score}%]`)} ${c.bold(r.filePath)} [${r.metadata.collection}]${ctx}`);
-      const preview = r.content.split("\n").slice(0, 4).join("\n");
-      console.log(c.dim(preview));
-      console.log("");
+  if (sub === "list") {
+    const brain2 = await createBrain();
+    await brain2.initialize();
+    const contexts = brain2.listContexts();
+    if (contexts.length === 0) {
+      console.log(c.yellow("  No contexts configured."));
+    } else {
+      console.log(c.bold("\n\u2501\u2501\u2501 Contexts \u2501\u2501\u2501\n"));
+      for (const ctx of contexts) {
+        console.log(`  ${c.cyan(ctx.collection)}:${ctx.path} \u2192 ${c.dim(ctx.context)}`);
+      }
     }
+    brain2.close();
+    return;
+  }
+  const task = args.slice(1).join(" ");
+  if (!task) {
+    console.log(c.red("Usage: brainbank context <task description>"));
+    console.log(c.dim("       brainbank context add <collection> <path> <description>"));
+    console.log(c.dim("       brainbank context list"));
+    process.exit(1);
   }
+  const brain = await createBrain();
+  const context = await brain.getContext(task);
+  console.log(context);
+  brain.close();
 }
-__name(printResults, "printResults");
+__name(cmdContext, "cmdContext");
+
+// src/cli/commands/system.ts
 async function cmdStats() {
   const brain = await createBrain();
   await brain.initialize();
@@ -682,6 +729,9 @@ function showHelp() {
   console.log(c.dim("  brainbank serve"));
 }
 __name(showHelp, "showHelp");
+
+// src/cli/index.ts
+var command = args[0];
 async function main() {
   switch (command) {
     case "index":