botholomew 0.12.5 → 0.13.0

package/src/db/reembed.ts

@@ -1,113 +0,0 @@
-import type { BotholomewConfig } from "../config/schemas.ts";
-import { embed } from "../context/embedder.ts";
-import { logger } from "../utils/logger.ts";
-import { withDb } from "./connection.ts";
-import { rebuildSearchIndex } from "./embeddings.ts";
-
-interface PendingRow {
-  id: string;
-  chunk_content: string | null;
-  title: string;
-  description: string;
-  drive: string | null;
-  path: string | null;
-}
-
-const BATCH_SIZE = 32;
-
-function buildEmbeddingInput(row: PendingRow): string {
-  const parts: string[] = [];
-  if (row.title) parts.push(`Title: ${row.title}`);
-  if (row.description) parts.push(`Description: ${row.description}`);
-  if (row.drive && row.path) parts.push(`Source: ${row.drive}:${row.path}`);
-  if (row.chunk_content) parts.push(row.chunk_content);
-  return parts.join("\n");
-}
-
-interface ReembedOptions {
-  /**
-   * `"missing"` (default) — only re-embed rows where `embedding IS NULL`.
-   * `"all"` — re-embed every row, including ones that already have a vector.
-   *           Use this after changing `embedding_model` so old vectors don't
-   *           sit alongside new ones in a different space.
-   */
-  mode?: "missing" | "all";
-}
-
-/**
- * Recompute embeddings for rows in the embeddings table.
- *
- * Default mode (`"missing"`) only touches NULL rows — the case after migration
- * 18 leaves existing rows with no vector. The `context reembed` CLI command
- * passes `mode: "all"` to force a full rebuild after the user changes
- * `embedding_model`.
- *
- * Each batch is its own withDb so the file lock releases between embedding
- * calls — long sweeps don't block other workers from acquiring the DB.
- */
-export async function reembedMissingVectors(
-  dbPath: string,
-  config: Required<BotholomewConfig>,
-  options: ReembedOptions = {},
-): Promise<void> {
-  const mode = options.mode ?? "missing";
-  const filter = mode === "all" ? "" : "WHERE embedding IS NULL";
-
-  const total = await withDb(dbPath, async (conn) => {
-    const row = await conn.queryGet<{ count: number }>(
-      `SELECT count(*)::INTEGER AS count FROM embeddings ${filter}`,
-    );
-    return row?.count ?? 0;
-  });
-
-  if (total === 0) {
-    logger.info("No embeddings to recompute.");
-    return;
-  }
-
-  logger.info(
-    `re-embedding ${total} row${total === 1 ? "" : "s"} with model ${config.embedding_model}`,
-  );
-
-  let processed = 0;
-  while (processed < total) {
-    const batch = await withDb(dbPath, async (conn) => {
-      const offsetClause = mode === "all" ? `LIMIT ?1 OFFSET ?2` : `LIMIT ?1`;
-      const sql = `SELECT e.id, e.chunk_content, e.title, e.description, ci.drive, ci.path
-         FROM embeddings e
-         LEFT JOIN context_items ci ON ci.id = e.context_item_id
-         ${filter}
-         ORDER BY e.id
-         ${offsetClause}`;
-      return mode === "all"
-        ? conn.queryAll<PendingRow>(sql, BATCH_SIZE, processed)
-        : conn.queryAll<PendingRow>(sql, BATCH_SIZE);
-    });
-
-    if (batch.length === 0) break;
-
-    const inputs = batch.map(buildEmbeddingInput);
-    const vectors = await embed(inputs, config);
-
-    await withDb(dbPath, async (conn) => {
-      for (let i = 0; i < batch.length; i++) {
-        const row = batch[i];
-        const vec = vectors[i];
-        if (!row || !vec) continue;
-        await conn.queryRun(
-          `UPDATE embeddings
-           SET embedding = ?1::FLOAT[${config.embedding_dimension}]
-           WHERE id = ?2`,
-          vec,
-          row.id,
-        );
-      }
-    });
-
-    processed += batch.length;
-    logger.info(`  re-embedded ${processed}/${total}`);
-  }
-
-  await withDb(dbPath, (conn) => rebuildSearchIndex(conn));
-  logger.success(`re-embed complete (${processed} rows)`);
-}

package/src/db/schedules.ts

@@ -1,213 +0,0 @@
-import type { DbConnection } from "./connection.ts";
-import { buildSetClauses, buildWhereClause, sanitizeInt } from "./query.ts";
-import { uuidv7 } from "./uuid.ts";
-
-export interface Schedule {
-  id: string;
-  name: string;
-  description: string;
-  frequency: string;
-  last_run_at: Date | null;
-  enabled: boolean;
-  claimed_by: string | null;
-  claimed_at: Date | null;
-  created_at: Date;
-  updated_at: Date;
-}
-
-interface ScheduleRow {
-  id: string;
-  name: string;
-  description: string;
-  frequency: string;
-  last_run_at: string | null;
-  enabled: boolean;
-  claimed_by: string | null;
-  claimed_at: string | null;
-  created_at: string;
-  updated_at: string;
-}
-
-function rowToSchedule(row: ScheduleRow): Schedule {
-  return {
-    id: row.id,
-    name: row.name,
-    description: row.description,
-    frequency: row.frequency,
-    last_run_at: row.last_run_at ? new Date(row.last_run_at) : null,
-    enabled: !!row.enabled,
-    claimed_by: row.claimed_by ?? null,
-    claimed_at: row.claimed_at ? new Date(row.claimed_at) : null,
-    created_at: new Date(row.created_at),
-    updated_at: new Date(row.updated_at),
-  };
-}
-
-export async function createSchedule(
-  db: DbConnection,
-  params: {
-    name: string;
-    description?: string;
-    frequency: string;
-  },
-): Promise<Schedule> {
-  const id = uuidv7();
-  const row = await db.queryGet<ScheduleRow>(
-    `INSERT INTO schedules (id, name, description, frequency)
-     VALUES (?1, ?2, ?3, ?4)
-     RETURNING *`,
-    id,
-    params.name,
-    params.description ?? "",
-    params.frequency,
-  );
-  if (!row) throw new Error("INSERT did not return a row");
-  return rowToSchedule(row);
-}
-
-export async function getSchedule(
-  db: DbConnection,
-  id: string,
-): Promise<Schedule | null> {
-  const row = await db.queryGet<ScheduleRow>(
-    "SELECT * FROM schedules WHERE id = ?1",
-    id,
-  );
-  return row ? rowToSchedule(row) : null;
-}
-
-export async function listSchedules(
-  db: DbConnection,
-  filters?: { enabled?: boolean; limit?: number; offset?: number },
-): Promise<Schedule[]> {
-  const { where, params } = buildWhereClause([
-    [
-      "enabled",
-      filters?.enabled !== undefined ? (filters.enabled ? 1 : 0) : undefined,
-    ],
-  ]);
-  const limit = filters?.limit ? `LIMIT ${sanitizeInt(filters.limit)}` : "";
-  const offset = filters?.offset ? `OFFSET ${sanitizeInt(filters.offset)}` : "";
-
-  const rows = await db.queryAll<ScheduleRow>(
-    `SELECT * FROM schedules ${where}
-     ORDER BY created_at ASC, id ASC
-     ${limit} ${offset}`,
-    ...params,
-  );
-  return rows.map(rowToSchedule);
-}
-
-export async function updateSchedule(
-  db: DbConnection,
-  id: string,
-  updates: Partial<
-    Pick<Schedule, "name" | "description" | "frequency" | "enabled">
-  >,
-): Promise<Schedule | null> {
-  const { setClauses, params } = buildSetClauses([
-    ["name", updates.name],
-    ["description", updates.description],
-    ["frequency", updates.frequency],
-    [
-      "enabled",
-      updates.enabled !== undefined ? (updates.enabled ? 1 : 0) : undefined,
-    ],
-  ]);
-
-  if (setClauses.length === 0) {
-    return getSchedule(db, id);
-  }
-
-  setClauses.push("updated_at = current_timestamp::VARCHAR");
-  params.push(id);
-
-  const row = await db.queryGet<ScheduleRow>(
-    `UPDATE schedules SET ${setClauses.join(", ")} WHERE id = ?${params.length} RETURNING *`,
-    ...params,
-  );
-  return row ? rowToSchedule(row) : null;
-}
-
-export async function deleteSchedule(
-  db: DbConnection,
-  id: string,
-): Promise<boolean> {
-  const result = await db.queryRun("DELETE FROM schedules WHERE id = ?1", id);
-  return result.changes > 0;
-}
-
-export async function deleteAllSchedules(db: DbConnection): Promise<number> {
-  const result = await db.queryRun("DELETE FROM schedules");
-  return result.changes;
-}
-
-export async function markScheduleRun(
-  db: DbConnection,
-  id: string,
-): Promise<void> {
-  await db.queryRun(
-    `UPDATE schedules SET last_run_at = current_timestamp::VARCHAR, updated_at = current_timestamp::VARCHAR WHERE id = ?1`,
-    id,
-  );
-}
-
-/**
- * Atomically claim a schedule for evaluation. Returns the schedule if
- * successfully claimed, or null if another worker already holds the claim
- * or the schedule ran too recently to re-evaluate.
- *
- * `staleAfterSeconds`: how long an existing claim is considered still-held
- * before another worker may steal it (protects against crashed claimers).
- * `minIntervalSeconds`: minimum gap since `last_run_at` before re-evaluation.
- */
-export async function claimSchedule(
-  db: DbConnection,
-  id: string,
-  claimedBy: string,
-  opts: { staleAfterSeconds: number; minIntervalSeconds: number },
-): Promise<Schedule | null> {
-  const row = await db.queryGet<ScheduleRow>(
-    `UPDATE schedules
-     SET claimed_by = ?1,
-         claimed_at = current_timestamp::VARCHAR
-     WHERE id = ?2
-       AND enabled = true
-       AND (
-         claimed_by IS NULL
-         OR claimed_at IS NULL
-         OR claimed_at::TIMESTAMP
-            < current_timestamp - to_seconds(CAST(?3 AS BIGINT))
-       )
-       AND (
-         last_run_at IS NULL
-         OR last_run_at::TIMESTAMP
-            < current_timestamp - to_seconds(CAST(?4 AS BIGINT))
-       )
-     RETURNING *`,
-    claimedBy,
-    id,
-    opts.staleAfterSeconds,
-    opts.minIntervalSeconds,
-  );
-  return row ? rowToSchedule(row) : null;
-}
-
-/**
- * Release a schedule claim without modifying `last_run_at`. Safe to call
- * even if the claim has already expired — the WHERE guard ensures we only
- * clear our own claim.
- */
-export async function releaseSchedule(
-  db: DbConnection,
-  id: string,
-  claimedBy: string,
-): Promise<void> {
-  await db.queryRun(
-    `UPDATE schedules
-     SET claimed_by = NULL, claimed_at = NULL
-     WHERE id = ?1 AND claimed_by = ?2`,
-    id,
-    claimedBy,
-  );
-}

package/src/db/tasks.ts

@@ -1,347 +0,0 @@
-import type { DbConnection } from "./connection.ts";
-import { buildSetClauses, buildWhereClause, sanitizeInt } from "./query.ts";
-import { uuidv7 } from "./uuid.ts";
-
-export const TASK_PRIORITIES = ["low", "medium", "high"] as const;
-export const TASK_STATUSES = [
-  "pending",
-  "in_progress",
-  "failed",
-  "complete",
-  "waiting",
-] as const;
-
-export interface Task {
-  id: string;
-  name: string;
-  description: string;
-  priority: (typeof TASK_PRIORITIES)[number];
-  status: (typeof TASK_STATUSES)[number];
-  waiting_reason: string | null;
-  claimed_by: string | null;
-  claimed_at: Date | null;
-  blocked_by: string[];
-  context_ids: string[];
-  output: string | null;
-  created_at: Date;
-  updated_at: Date;
-}
-
-interface TaskRow {
-  id: string;
-  name: string;
-  description: string;
-  priority: string;
-  status: string;
-  waiting_reason: string | null;
-  claimed_by: string | null;
-  claimed_at: string | null;
-  blocked_by: string;
-  context_ids: string;
-  output: string | null;
-  created_at: string;
-  updated_at: string;
-}
-
-function rowToTask(row: TaskRow): Task {
-  return {
-    id: row.id,
-    name: row.name,
-    description: row.description,
-    priority: row.priority as Task["priority"],
-    status: row.status as Task["status"],
-    waiting_reason: row.waiting_reason,
-    claimed_by: row.claimed_by,
-    claimed_at: row.claimed_at ? new Date(row.claimed_at) : null,
-    blocked_by: JSON.parse(row.blocked_by || "[]"),
-    context_ids: JSON.parse(row.context_ids || "[]"),
-    output: row.output,
-    created_at: new Date(row.created_at),
-    updated_at: new Date(row.updated_at),
-  };
-}
-
-export async function createTask(
-  db: DbConnection,
-  params: {
-    name: string;
-    description?: string;
-    priority?: Task["priority"];
-    blocked_by?: string[];
-    context_ids?: string[];
-  },
-): Promise<Task> {
-  const id = uuidv7();
-  const blockedByArr = params.blocked_by ?? [];
-  await validateBlockedBy(db, id, blockedByArr);
-  const blockedBy = JSON.stringify(blockedByArr);
-  const contextIds = JSON.stringify(params.context_ids ?? []);
-
-  const row = await db.queryGet<TaskRow>(
-    `INSERT INTO tasks (id, name, description, priority, blocked_by, context_ids)
-     VALUES (?1, ?2, ?3, ?4, ?5, ?6)
-     RETURNING *`,
-    id,
-    params.name,
-    params.description ?? "",
-    params.priority ?? "medium",
-    blockedBy,
-    contextIds,
-  );
-  if (!row) throw new Error("INSERT did not return a row");
-  return rowToTask(row);
-}
-
-export async function getTask(
-  db: DbConnection,
-  id: string,
-): Promise<Task | null> {
-  const row = await db.queryGet<TaskRow>(
-    "SELECT * FROM tasks WHERE id = ?1",
-    id,
-  );
-  return row ? rowToTask(row) : null;
-}
-
-export async function listTasks(
-  db: DbConnection,
-  filters?: {
-    status?: Task["status"];
-    priority?: Task["priority"];
-    limit?: number;
-    offset?: number;
-  },
-): Promise<Task[]> {
-  const { where, params } = buildWhereClause([
-    ["status", filters?.status],
-    ["priority", filters?.priority],
-  ]);
-  const limit = filters?.limit ? `LIMIT ${sanitizeInt(filters.limit)}` : "";
-  const offset = filters?.offset ? `OFFSET ${sanitizeInt(filters.offset)}` : "";
-
-  const rows = await db.queryAll<TaskRow>(
-    `SELECT * FROM tasks ${where}
-     ORDER BY created_at DESC, id DESC
-     ${limit} ${offset}`,
-    ...params,
-  );
-  return rows.map(rowToTask);
-}
-
-export async function updateTaskStatus(
-  db: DbConnection,
-  id: string,
-  status: Task["status"],
-  reason?: string | null,
-  output?: string | null,
-): Promise<void> {
-  await db.queryRun(
-    `UPDATE tasks
-     SET status = ?1, waiting_reason = ?2, output = ?3, updated_at = current_timestamp::VARCHAR
-     WHERE id = ?4`,
-    status,
-    reason ?? null,
-    output ?? null,
-    id,
-  );
-}
-
-export async function validateBlockedBy(
-  db: DbConnection,
-  taskId: string,
-  blockedBy: string[],
-): Promise<void> {
-  if (blockedBy.length === 0) return;
-
-  // Check for direct self-reference
-  if (blockedBy.includes(taskId)) {
-    throw new Error(`Circular dependency: task ${taskId} cannot block itself`);
-  }
-
-  // DFS through transitive blocked_by chains
-  const visited = new Set<string>();
-
-  async function dfs(currentId: string): Promise<void> {
-    if (visited.has(currentId)) return;
-    visited.add(currentId);
-
-    const task = await getTask(db, currentId);
-    if (!task) return;
-
-    for (const dep of task.blocked_by) {
-      if (dep === taskId) {
-        throw new Error(
-          `Circular dependency: adding blocked_by would create cycle involving task ${taskId}`,
-        );
-      }
-      await dfs(dep);
-    }
-  }
-
-  for (const blockerId of blockedBy) {
-    await dfs(blockerId);
-  }
-}
-
-export async function updateTask(
-  db: DbConnection,
-  id: string,
-  updates: Partial<
-    Pick<Task, "name" | "description" | "priority" | "status" | "blocked_by">
-  >,
-): Promise<Task | null> {
-  if (updates.blocked_by !== undefined) {
-    await validateBlockedBy(db, id, updates.blocked_by);
-  }
-
-  const { setClauses, params } = buildSetClauses([
-    ["name", updates.name],
-    ["description", updates.description],
-    ["priority", updates.priority],
-    ["status", updates.status],
-    [
-      "blocked_by",
-      updates.blocked_by !== undefined
-        ? JSON.stringify(updates.blocked_by)
-        : undefined,
-    ],
-  ]);
-
-  if (setClauses.length === 0) {
-    return getTask(db, id);
-  }
-
-  setClauses.push("updated_at = current_timestamp::VARCHAR");
-  params.push(id);
-
-  const row = await db.queryGet<TaskRow>(
-    `UPDATE tasks SET ${setClauses.join(", ")} WHERE id = ?${params.length} RETURNING *`,
-    ...params,
-  );
-  return row ? rowToTask(row) : null;
-}
-
-export async function deleteTask(
-  db: DbConnection,
-  id: string,
-): Promise<boolean> {
-  const result = await db.queryRun("DELETE FROM tasks WHERE id = ?1", id);
-  return result.changes > 0;
-}
-
-export async function deleteAllTasks(db: DbConnection): Promise<number> {
-  const result = await db.queryRun("DELETE FROM tasks");
-  return result.changes;
-}
-
-export async function resetTask(
-  db: DbConnection,
-  id: string,
-): Promise<Task | null> {
-  const row = await db.queryGet<TaskRow>(
-    `UPDATE tasks
-     SET status = 'pending', claimed_by = NULL, claimed_at = NULL,
-         waiting_reason = NULL, output = NULL, updated_at = current_timestamp::VARCHAR
-     WHERE id = ?1
-     RETURNING *`,
-    id,
-  );
-  return row ? rowToTask(row) : null;
-}
-
-export async function resetStaleTasks(
-  db: DbConnection,
-  timeoutSeconds: number,
-): Promise<string[]> {
-  const rows = await db.queryAll<{ id: string }>(
-    `UPDATE tasks
-     SET status = 'pending',
-         claimed_by = NULL,
-         claimed_at = NULL,
-         updated_at = current_timestamp::VARCHAR
-     WHERE status = 'in_progress'
-       AND claimed_at IS NOT NULL
-       AND claimed_at::TIMESTAMP < current_timestamp - to_seconds(CAST(?1 AS BIGINT))
-     RETURNING id`,
-    timeoutSeconds,
-  );
-  return rows.map((r) => r.id);
-}
-
-export async function claimNextTask(
-  db: DbConnection,
-  claimedBy: string,
-): Promise<Task | null> {
-  // Find highest-priority unblocked pending task
-  // Use application-level filtering for blocked_by since DuckDB doesn't have json_each
-  const allPending = await db.queryAll<TaskRow>(
-    `SELECT * FROM tasks
-     WHERE status = 'pending'
-     ORDER BY
-       CASE priority WHEN 'high' THEN 0 WHEN 'medium' THEN 1 WHEN 'low' THEN 2 END,
-       created_at ASC`,
-  );
-
-  for (const row of allPending) {
-    const blockedBy: string[] = JSON.parse(row.blocked_by || "[]");
-    if (blockedBy.length > 0) {
-      // Check if all blockers are complete
-      let allComplete = true;
-      for (const blockerId of blockedBy) {
-        const blocker = await db.queryGet<{ status: string }>(
-          "SELECT status FROM tasks WHERE id = ?1",
-          blockerId,
-        );
-        if (!blocker || blocker.status !== "complete") {
-          allComplete = false;
-          break;
-        }
-      }
-      if (!allComplete) continue;
-    }
-
-    // Attempt atomic claim — RETURNING confirms we actually got it
-    const claimed = await db.queryGet<TaskRow>(
-      `UPDATE tasks
-       SET status = 'in_progress',
-           claimed_by = ?1,
-           claimed_at = current_timestamp::VARCHAR,
-           updated_at = current_timestamp::VARCHAR
-       WHERE id = ?2 AND status = 'pending'
-       RETURNING *`,
-      claimedBy,
-      row.id,
-    );
-
-    if (claimed) {
-      return rowToTask(claimed);
-    }
-    // Another process claimed it — try next candidate
-  }
-
-  return null;
-}
-
-/**
- * Atomically claim a specific task by id. Returns the task if successfully
- * claimed, or null if the task doesn't exist, is already claimed, or isn't
- * in `pending` state.
- */
-export async function claimSpecificTask(
-  db: DbConnection,
-  taskId: string,
-  claimedBy: string,
-): Promise<Task | null> {
-  const row = await db.queryGet<TaskRow>(
-    `UPDATE tasks
-     SET status = 'in_progress',
-         claimed_by = ?1,
-         claimed_at = current_timestamp::VARCHAR,
-         updated_at = current_timestamp::VARCHAR
-     WHERE id = ?2 AND status = 'pending'
-     RETURNING *`,
-    claimedBy,
-    taskId,
-  );
-  return row ? rowToTask(row) : null;
-}