bonecode 1.1.0 → 1.2.0

package/dist/bone/output/rag/src/flows.js

@@ -0,0 +1,236 @@
+"use strict";
+// Generated by BoneScript compiler. DO NOT EDIT.
+// Saga runtime — implements flow declarations with backward compensation.
+//
+// On step failure, executes compensations for ALL completed steps in reverse order.
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.execute_reindex_file_pipeline = exports.execute_ingest_codebase_pipeline = exports.executeFlow = void 0;
+const logger_1 = require("./logger");
+const metrics_1 = require("./metrics");
+async function executeFlow(name, steps, ctx) {
+    const completed = [];
+    for (const step of steps) {
+        try {
+            logger_1.logger.info("flow_step_started", { event: name + "." + step.name });
+            await step.action(ctx);
+            completed.push({ step: step.name, compensation: step.compensation });
+            (0, metrics_1.counter)("flow.step_completed", { flow: name, step: step.name });
+        }
+        catch (e) {
+            logger_1.logger.error("flow_step_failed", { event: name + "." + step.name, metadata: { error: e.message } });
+            (0, metrics_1.counter)("flow.step_failed", { flow: name, step: step.name });
+            // Backward compensation in reverse order
+            const compensated = [];
+            for (const c of [...completed].reverse()) {
+                if (!c.compensation)
+                    continue;
+                try {
+                    await c.compensation(ctx);
+                    compensated.push(c.step);
+                    logger_1.logger.info("flow_compensated", { event: name + "." + c.step });
+                }
+                catch (compErr) {
+                    logger_1.logger.error("flow_compensation_failed", { event: name + "." + c.step, metadata: { error: compErr.message } });
+                    // Continue with other compensations even if one fails
+                }
+            }
+            return { ok: false, failed_step: step.name, compensated, error: e.message };
+        }
+    }
+    (0, metrics_1.counter)("flow.completed", { flow: name });
+    return { ok: true, compensated: [] };
+}
+exports.executeFlow = executeFlow;
+// Flow: ingest_codebase_pipeline
+// ctx must contain: { req, res, auth, client? } for transactional flows
+async function execute_ingest_codebase_pipeline(ctx) {
+    const steps = [
+        {
+            name: "scan",
+            action: async (ctx) => {
+                // Calls capability: scan_directory(knowledge_base, root_path)
+                const response = await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/scan-directory`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify(ctx.req.body),
+                });
+                if (!response.ok)
+                    throw new Error(`Step scan failed: ${await response.text()}`);
+                ctx.scan_result = await response.json();
+            },
+            compensation: async (ctx) => {
+                // Compensates: mark_kb_error(knowledge_base)
+                await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/mark-kb-error`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify({ ...ctx.req.body, _compensating: true }),
+                });
+            },
+        },
+        {
+            name: "chunk",
+            action: async (ctx) => {
+                // Calls capability: chunk_all_files(knowledge_base, file_list)
+                const response = await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/chunk-all-files`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify(ctx.req.body),
+                });
+                if (!response.ok)
+                    throw new Error(`Step chunk failed: ${await response.text()}`);
+                ctx.chunk_result = await response.json();
+            },
+            compensation: async (ctx) => {
+                // Compensates: delete_partial_chunks(knowledge_base)
+                await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/delete-partial-chunks`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify({ ...ctx.req.body, _compensating: true }),
+                });
+            },
+        },
+        {
+            name: "embed",
+            action: async (ctx) => {
+                // Calls capability: embed_all_chunks(knowledge_base)
+                const response = await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/embed-all-chunks`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify(ctx.req.body),
+                });
+                if (!response.ok)
+                    throw new Error(`Step embed failed: ${await response.text()}`);
+                ctx.embed_result = await response.json();
+            },
+            compensation: async (ctx) => {
+                // Compensates: delete_embeddings(knowledge_base)
+                await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/delete-embeddings`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify({ ...ctx.req.body, _compensating: true }),
+                });
+            },
+        },
+        {
+            name: "finalize",
+            action: async (ctx) => {
+                // Calls capability: mark_kb_ready(knowledge_base)
+                const response = await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/mark-kb-ready`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify(ctx.req.body),
+                });
+                if (!response.ok)
+                    throw new Error(`Step finalize failed: ${await response.text()}`);
+                ctx.finalize_result = await response.json();
+            },
+            compensation: async (ctx) => {
+                // Compensates: mark_kb_error(knowledge_base)
+                await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/mark-kb-error`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify({ ...ctx.req.body, _compensating: true }),
+                });
+            },
+        },
+    ];
+    return executeFlow("ingest_codebase_pipeline", steps, ctx);
+}
+exports.execute_ingest_codebase_pipeline = execute_ingest_codebase_pipeline;
+// Flow: reindex_file_pipeline
+// ctx must contain: { req, res, auth, client? } for transactional flows
+async function execute_reindex_file_pipeline(ctx) {
+    const steps = [
+        {
+            name: "delete_old",
+            action: async (ctx) => {
+                // Calls capability: delete_file_chunks(knowledge_base, file_path)
+                const response = await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/delete-file-chunks`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify(ctx.req.body),
+                });
+                if (!response.ok)
+                    throw new Error(`Step delete_old failed: ${await response.text()}`);
+                ctx.delete_old_result = await response.json();
+            },
+            compensation: async (ctx) => {
+                // Compensates: restore_old_chunks(knowledge_base, file_path)
+                await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/restore-old-chunks`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify({ ...ctx.req.body, _compensating: true }),
+                });
+            },
+        },
+        {
+            name: "chunk",
+            action: async (ctx) => {
+                // Calls capability: chunk_file_for_index(knowledge_base, file_path)
+                const response = await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/chunk-file-for-index`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify(ctx.req.body),
+                });
+                if (!response.ok)
+                    throw new Error(`Step chunk failed: ${await response.text()}`);
+                ctx.chunk_result = await response.json();
+            },
+            compensation: async (ctx) => {
+                // Compensates: delete_new_chunks(knowledge_base, file_path)
+                await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/delete-new-chunks`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify({ ...ctx.req.body, _compensating: true }),
+                });
+            },
+        },
+        {
+            name: "embed",
+            action: async (ctx) => {
+                // Calls capability: embed_file_chunks(knowledge_base, file_path)
+                const response = await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/embed-file-chunks`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify(ctx.req.body),
+                });
+                if (!response.ok)
+                    throw new Error(`Step embed failed: ${await response.text()}`);
+                ctx.embed_result = await response.json();
+            },
+            compensation: async (ctx) => {
+                // Compensates: delete_new_embeddings(knowledge_base, file_path)
+                await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/delete-new-embeddings`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify({ ...ctx.req.body, _compensating: true }),
+                });
+            },
+        },
+        {
+            name: "update",
+            action: async (ctx) => {
+                // Calls capability: update_file_record(knowledge_base, file_path)
+                const response = await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/update-file-record`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify(ctx.req.body),
+                });
+                if (!response.ok)
+                    throw new Error(`Step update failed: ${await response.text()}`);
+                ctx.update_result = await response.json();
+            },
+            compensation: async (ctx) => {
+                // Compensates: restore_old_file_record(knowledge_base, file_path)
+                await fetch(`${process.env.SERVICE_BASE_URL || "http://localhost:3000"}/restore-old-file-record`, {
+                    method: "POST",
+                    headers: { "Content-Type": "application/json", "Authorization": ctx.req.headers.authorization || "" },
+                    body: JSON.stringify({ ...ctx.req.body, _compensating: true }),
+                });
+            },
+        },
+    ];
+    return executeFlow("reindex_file_pipeline", steps, ctx);
+}
+exports.execute_reindex_file_pipeline = execute_reindex_file_pipeline;
+//# sourceMappingURL=flows.js.map

package/dist/bone/output/rag/src/flows.js.map

@@ -0,0 +1 @@
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package/dist/bone/output/rag/src/logger.d.ts

@@ -0,0 +1,28 @@
+export type LogLevel = "debug" | "info" | "warn" | "error" | "fatal";
+export type LogStatus = "success" | "failure" | "timeout" | "rejected";
+export interface LogEntry {
+    timestamp: string;
+    level: LogLevel;
+    service: string;
+    trace_id: string;
+    span_id: string;
+    event: string;
+    duration_ms?: number;
+    status: LogStatus;
+    entity_id?: string;
+    actor_id?: string | null;
+    error_code?: string | null;
+    metadata?: Record<string, unknown>;
+}
+declare class Logger {
+    private service;
+    constructor(service: string);
+    emit(entry: Omit<LogEntry, "timestamp" | "service" | "span_id">): void;
+    info(event: string, fields?: Partial<LogEntry>): void;
+    warn(event: string, fields?: Partial<LogEntry>): void;
+    error(event: string, fields?: Partial<LogEntry>): void;
+    debug(event: string, fields?: Partial<LogEntry>): void;
+}
+export declare function createLogger(service: string): Logger;
+export declare const logger: Logger;
+export {};

package/dist/bone/output/rag/src/logger.js

@@ -0,0 +1,45 @@
+"use strict";
+// Generated by BoneScript compiler. DO NOT EDIT.
+// Implements spec/10 §3 (Logging Schema)
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.logger = exports.createLogger = void 0;
+const uuid_1 = require("uuid");
+class Logger {
+    constructor(service) {
+        this.service = service;
+    }
+    emit(entry) {
+        const full = {
+            timestamp: new Date().toISOString(),
+            service: this.service,
+            span_id: (0, uuid_1.v4)(),
+            ...entry,
+        };
+        // Suppress all log output in TUI mode
+        if (process.env.BONECODE_TUI === "1")
+            return;
+        // In production: send to log aggregator. In dev: console.
+        const fn = entry.level === "error" || entry.level === "fatal" ? console.error : console.log;
+        fn(JSON.stringify(full));
+    }
+    info(event, fields = {}) {
+        this.emit({ level: "info", event, status: "success", trace_id: fields.trace_id || "", ...fields });
+    }
+    warn(event, fields = {}) {
+        this.emit({ level: "warn", event, status: "rejected", trace_id: fields.trace_id || "", ...fields });
+    }
+    error(event, fields = {}) {
+        this.emit({ level: "error", event, status: "failure", trace_id: fields.trace_id || "", ...fields });
+    }
+    debug(event, fields = {}) {
+        if (process.env.LOG_LEVEL === "debug") {
+            this.emit({ level: "debug", event, status: "success", trace_id: fields.trace_id || "", ...fields });
+        }
+    }
+}
+function createLogger(service) {
+    return new Logger(service);
+}
+exports.createLogger = createLogger;
+exports.logger = createLogger("RAGDomain");
+//# sourceMappingURL=logger.js.map

package/dist/bone/output/rag/src/logger.js.map

@@ -0,0 +1 @@
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package/dist/bone/output/rag/src/metrics.d.ts

@@ -0,0 +1,5 @@
+export declare function counter(name: string, labels?: Record<string, string>): void;
+export declare function histogram(name: string, value: number, labels?: Record<string, string>): void;
+export declare function gauge(name: string, value: number, labels?: Record<string, string>): void;
+export declare function dump(): string;
+export declare function reset(): void;

package/dist/bone/output/rag/src/metrics.js

@@ -0,0 +1,60 @@
+"use strict";
+// Generated by BoneScript compiler. DO NOT EDIT.
+// Implements spec/10 §4 (Telemetry Hooks)
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.reset = exports.dump = exports.gauge = exports.histogram = exports.counter = void 0;
+const metrics = new Map();
+function key(name, labels) {
+    const parts = Object.keys(labels).sort().map(k => `${k}="${labels[k]}"`);
+    return parts.length > 0 ? `${name}{${parts.join(",")}}` : name;
+}
+function counter(name, labels = {}) {
+    const k = key(name, labels);
+    const existing = metrics.get(k);
+    if (existing && existing.type === "counter") {
+        existing.value++;
+    }
+    else {
+        metrics.set(k, { type: "counter", value: 1, labels });
+    }
+}
+exports.counter = counter;
+function histogram(name, value, labels = {}) {
+    const k = key(name, labels);
+    const existing = metrics.get(k);
+    if (existing && existing.type === "histogram") {
+        existing.values.push(value);
+    }
+    else {
+        metrics.set(k, { type: "histogram", values: [value], labels });
+    }
+}
+exports.histogram = histogram;
+function gauge(name, value, labels = {}) {
+    const k = key(name, labels);
+    metrics.set(k, { type: "gauge", value, labels });
+}
+exports.gauge = gauge;
+function dump() {
+    const lines = [];
+    for (const [k, m] of metrics.entries()) {
+        if (m.type === "counter" || m.type === "gauge") {
+            lines.push(`${k} ${m.value}`);
+        }
+        else {
+            const sum = m.values.reduce((a, b) => a + b, 0);
+            const count = m.values.length;
+            const avg = count > 0 ? sum / count : 0;
+            lines.push(`${k}_count ${count}`);
+            lines.push(`${k}_sum ${sum}`);
+            lines.push(`${k}_avg ${avg.toFixed(2)}`);
+        }
+    }
+    return lines.join("\n");
+}
+exports.dump = dump;
+function reset() {
+    metrics.clear();
+}
+exports.reset = reset;
+//# sourceMappingURL=metrics.js.map

package/dist/bone/output/rag/src/metrics.js.map

@@ -0,0 +1 @@
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package/dist/bone/output/rag/src/routes/code_chunk.d.ts

@@ -0,0 +1 @@
+export declare const codeChunksRouter: import("express-serve-static-core").Router;

package/dist/bone/output/rag/src/routes/code_chunk.js

@@ -0,0 +1,100 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.codeChunksRouter = void 0;
+// Generated by BoneScript compiler. DO NOT EDIT.
+// Service: CodeChunkService
+const express_1 = require("express");
+const uuid_1 = require("uuid");
+const db_1 = require("../db");
+const auth_1 = require("../auth");
+const metrics_1 = require("../metrics");
+const __algorithms = __importStar(require("../algorithms"));
+const { shortestPath, topologicalSort, binarySearch, bipartiteMatching, roundRobin, weightedAverage, percentile, rankBy, consistentHash } = __algorithms;
+exports.codeChunksRouter = (0, express_1.Router)();
+// CREATE
+exports.codeChunksRouter.post("/", auth_1.requireAuth, async (req, res) => {
+    try {
+        const id = (0, uuid_1.v4)();
+        const { code_file_id, knowledge_base_id, project_id, content, start_line, end_line, chunk_index, language, symbol_name, symbol_type, metadata } = req.body;
+        const sql = `INSERT INTO code_chunks (id, code_file_id, knowledge_base_id, project_id, content, start_line, end_line, chunk_index, language, symbol_name, symbol_type, metadata) VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11, $12) RETURNING *`;
+        const rows = await (0, db_1.query)(sql, [id, code_file_id, knowledge_base_id, project_id, content, start_line, end_line, chunk_index, language, symbol_name, symbol_type, metadata]);
+        (0, metrics_1.counter)("entity.created", { entity: "CodeChunk" });
+        res.status(201).json(rows[0]);
+    }
+    catch (e) {
+        res.status(400).json({ error: { code: "CREATE_FAILED", message: e.message } });
+    }
+});
+// READ
+exports.codeChunksRouter.get("/:id", auth_1.requireAuth, async (req, res) => {
+    try {
+        const row = await (0, db_1.queryOne)(`SELECT * FROM code_chunks WHERE id = $1`, [req.params.id]);
+        if (!row)
+            return res.status(404).json({ error: { code: "NOT_FOUND", message: "Not found" } });
+        res.json(row);
+    }
+    catch (e) {
+        res.status(500).json({ error: { code: "DB_ERROR", message: e.message } });
+    }
+});
+// LIST
+exports.codeChunksRouter.get("/", auth_1.requireAuth, async (req, res) => {
+    try {
+        const page = parseInt(req.query.page) || 1;
+        const pageSize = Math.min(parseInt(req.query.page_size) || 50, 100);
+        const offset = (page - 1) * pageSize;
+        const rows = await (0, db_1.query)(`SELECT code_chunks.*, row_to_json(code_file.*) as code_file FROM code_chunks LEFT JOIN code_files code_file ON code_chunks.code_file_id = code_file.id ORDER BY code_chunks.created_at DESC LIMIT $1 OFFSET $2`, [pageSize, offset]);
+        const [{ count }] = await (0, db_1.query)(`SELECT COUNT(*) as count FROM code_chunks`);
+        res.json({ items: rows, total: parseInt(count), page, page_size: pageSize });
+    }
+    catch (e) {
+        res.status(500).json({ error: { code: "DB_ERROR", message: e.message } });
+    }
+});
+// UPDATE
+exports.codeChunksRouter.put("/:id", auth_1.requireAuth, async (req, res) => {
+    const fields = { ...req.body };
+    const sets = Object.keys(fields).map((k, i) => `${k} = $${i + 2}`).join(", ");
+    const values = Object.values(fields);
+    const sql = `UPDATE code_chunks SET ${sets}, updated_at = NOW() WHERE id = $1 RETURNING *`;
+    const rows = await (0, db_1.query)(sql, [req.params.id, ...values]);
+    if (rows.length === 0)
+        return res.status(404).json({ error: { code: "NOT_FOUND", message: "Not found" } });
+    res.json(rows[0]);
+});
+// DELETE
+exports.codeChunksRouter.delete("/:id", auth_1.requireAuth, async (req, res) => {
+    try {
+        const count = await (0, db_1.execute)(`DELETE FROM code_chunks WHERE id = $1`, [req.params.id]);
+        if (count === 0)
+            return res.status(404).json({ error: { code: "NOT_FOUND", message: "Not found" } });
+        res.status(204).send();
+    }
+    catch (e) {
+        res.status(500).json({ error: { code: "DB_ERROR", message: e.message } });
+    }
+});
+//# sourceMappingURL=code_chunk.js.map

package/dist/bone/output/rag/src/routes/code_chunk.js.map

@@ -0,0 +1 @@
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package/dist/bone/output/rag/src/routes/code_file.d.ts

@@ -0,0 +1 @@
+export declare const codeFilesRouter: import("express-serve-static-core").Router;