boltz-api 0.41.0 → 0.42.0

package/src/resources/predictions/structure-and-binding.ts

@@ -261,9 +261,8 @@ export namespace StructureAndBindingRetrieveResponse {
 
     /**
      * Template structure files to guide protein-chain prediction. Supports up to 4 CIF
-     * or PDB templates from HTTPS URLs or base64 uploads. Use chain_id and template_id
-     * to map request chains to template chains when the IDs differ or when providing
-     * multi-chain templates.
+     * or PDB templates from HTTPS URLs or base64 uploads. Use template_chains to map
+     * request chains to template-file chains.
      */
     templates?: Array<Input.Template>;
   }
@@ -765,32 +764,18 @@ export namespace StructureAndBindingRetrieveResponse {
      */
     export interface Template {
       /**
-       * Template structure format. Base64 uploads must use media_type chemical/x-cif for
-       * CIF or chemical/x-pdb for PDB.
+       * Request-to-template chain mappings. Each input_chain_id and template_chain_id
+       * must be unique within this template.
        */
-      format: 'cif' | 'pdb';
+      template_chains: Array<Template.TemplateChain>;
 
-      source: Template.Source;
-
-      /**
-       * One chain ID, or an ordered list of chain IDs for multi-chain templates. For
-       * chain_id, values refer to input chains; for template_id, values refer to chains
-       * in the template file.
-       */
-      chain_id?: string | Array<string>;
+      template_structure: Template.TemplateStructure;
 
       /**
        * Force the template alignment within threshold.
        */
       force?: boolean;
 
-      /**
-       * One chain ID, or an ordered list of chain IDs for multi-chain templates. For
-       * chain_id, values refer to input chains; for template_id, values refer to chains
-       * in the template file.
-       */
-      template_id?: string | Array<string>;
-
       /**
        * Distance threshold in angstroms used when force is true.
        */
@@ -798,7 +783,23 @@ export namespace StructureAndBindingRetrieveResponse {
     }
 
     export namespace Template {
-      export interface Source {
+      /**
+       * Mapping from one request chain to the corresponding chain in the template
+       * structure file.
+       */
+      export interface TemplateChain {
+        /**
+         * Chain ID in this prediction request
+         */
+        input_chain_id: string;
+
+        /**
+         * Corresponding chain ID in the template structure file
+         */
+        template_chain_id: string;
+      }
+
+      export interface TemplateStructure {
         /**
          * URL to download the file
          */
@@ -1267,9 +1268,8 @@ export namespace StructureAndBindingStartResponse {
 
     /**
      * Template structure files to guide protein-chain prediction. Supports up to 4 CIF
-     * or PDB templates from HTTPS URLs or base64 uploads. Use chain_id and template_id
-     * to map request chains to template chains when the IDs differ or when providing
-     * multi-chain templates.
+     * or PDB templates from HTTPS URLs or base64 uploads. Use template_chains to map
+     * request chains to template-file chains.
      */
     templates?: Array<Input.Template>;
   }
@@ -1771,32 +1771,18 @@ export namespace StructureAndBindingStartResponse {
      */
     export interface Template {
       /**
-       * Template structure format. Base64 uploads must use media_type chemical/x-cif for
-       * CIF or chemical/x-pdb for PDB.
+       * Request-to-template chain mappings. Each input_chain_id and template_chain_id
+       * must be unique within this template.
        */
-      format: 'cif' | 'pdb';
+      template_chains: Array<Template.TemplateChain>;
 
-      source: Template.Source;
-
-      /**
-       * One chain ID, or an ordered list of chain IDs for multi-chain templates. For
-       * chain_id, values refer to input chains; for template_id, values refer to chains
-       * in the template file.
-       */
-      chain_id?: string | Array<string>;
+      template_structure: Template.TemplateStructure;
 
       /**
        * Force the template alignment within threshold.
        */
       force?: boolean;
 
-      /**
-       * One chain ID, or an ordered list of chain IDs for multi-chain templates. For
-       * chain_id, values refer to input chains; for template_id, values refer to chains
-       * in the template file.
-       */
-      template_id?: string | Array<string>;
-
       /**
        * Distance threshold in angstroms used when force is true.
        */
@@ -1804,7 +1790,23 @@ export namespace StructureAndBindingStartResponse {
     }
 
     export namespace Template {
-      export interface Source {
+      /**
+       * Mapping from one request chain to the corresponding chain in the template
+       * structure file.
+       */
+      export interface TemplateChain {
+        /**
+         * Chain ID in this prediction request
+         */
+        input_chain_id: string;
+
+        /**
+         * Corresponding chain ID in the template structure file
+         */
+        template_chain_id: string;
+      }
+
+      export interface TemplateStructure {
         /**
          * URL to download the file
          */
@@ -2080,9 +2082,8 @@ export namespace StructureAndBindingEstimateCostParams {
 
     /**
      * Template structure files to guide protein-chain prediction. Supports up to 4 CIF
-     * or PDB templates from HTTPS URLs or base64 uploads. Use chain_id and template_id
-     * to map request chains to template chains when the IDs differ or when providing
-     * multi-chain templates.
+     * or PDB templates from HTTPS URLs or base64 uploads. Use template_chains to map
+     * request chains to template-file chains.
      */
     templates?: Array<Input.Template>;
   }
@@ -2589,35 +2590,22 @@ export namespace StructureAndBindingEstimateCostParams {
      */
     export interface Template {
       /**
-       * Template structure format. Base64 uploads must use media_type chemical/x-cif for
-       * CIF or chemical/x-pdb for PDB.
+       * Request-to-template chain mappings. Each input_chain_id and template_chain_id
+       * must be unique within this template.
        */
-      format: 'cif' | 'pdb';
+      template_chains: Array<Template.TemplateChain>;
 
       /**
-       * How to provide a file to the API
+       * How to provide a template structure file. URLs must point to a CIF or PDB file;
+       * base64 uploads must use chemical/x-cif or chemical/x-pdb.
        */
-      source: Template.URLSource | Template.Base64Source;
-
-      /**
-       * One chain ID, or an ordered list of chain IDs for multi-chain templates. For
-       * chain_id, values refer to input chains; for template_id, values refer to chains
-       * in the template file.
-       */
-      chain_id?: string | Array<string>;
+      template_structure: Template.URLSource | Template.TemplateStructureBase64Source;
 
       /**
        * Force the template alignment within threshold.
        */
       force?: boolean;
 
-      /**
-       * One chain ID, or an ordered list of chain IDs for multi-chain templates. For
-       * chain_id, values refer to input chains; for template_id, values refer to chains
-       * in the template file.
-       */
-      template_id?: string | Array<string>;
-
       /**
        * Distance threshold in angstroms used when force is true.
        */
@@ -2625,22 +2613,41 @@ export namespace StructureAndBindingEstimateCostParams {
     }
 
     export namespace Template {
+      /**
+       * Mapping from one request chain to the corresponding chain in the template
+       * structure file.
+       */
+      export interface TemplateChain {
+        /**
+         * Chain ID in this prediction request
+         */
+        input_chain_id: string;
+
+        /**
+         * Corresponding chain ID in the template structure file
+         */
+        template_chain_id: string;
+      }
+
       export interface URLSource {
         type: 'url';
 
         url: string;
       }
 
-      export interface Base64Source {
+      export interface TemplateStructureBase64Source {
         /**
-         * Base64-encoded file contents
+         * Base64-encoded template structure file contents
          */
         data: string;
 
         /**
-         * MIME type (e.g., text/csv)
+         * Template structure MIME type
+         *
+         * - `chemical/x-cif` - CIF template structure
+         * - `chemical/x-pdb` - PDB template structure
          */
-        media_type: string;
+        media_type: 'chemical/x-cif' | 'chemical/x-pdb';
 
         type: 'base64';
       }
@@ -2704,9 +2711,8 @@ export namespace StructureAndBindingStartParams {
 
     /**
      * Template structure files to guide protein-chain prediction. Supports up to 4 CIF
-     * or PDB templates from HTTPS URLs or base64 uploads. Use chain_id and template_id
-     * to map request chains to template chains when the IDs differ or when providing
-     * multi-chain templates.
+     * or PDB templates from HTTPS URLs or base64 uploads. Use template_chains to map
+     * request chains to template-file chains.
      */
     templates?: Array<Input.Template>;
   }
@@ -3213,35 +3219,22 @@ export namespace StructureAndBindingStartParams {
      */
     export interface Template {
       /**
-       * Template structure format. Base64 uploads must use media_type chemical/x-cif for
-       * CIF or chemical/x-pdb for PDB.
+       * Request-to-template chain mappings. Each input_chain_id and template_chain_id
+       * must be unique within this template.
        */
-      format: 'cif' | 'pdb';
+      template_chains: Array<Template.TemplateChain>;
 
       /**
-       * How to provide a file to the API
+       * How to provide a template structure file. URLs must point to a CIF or PDB file;
+       * base64 uploads must use chemical/x-cif or chemical/x-pdb.
        */
-      source: Template.URLSource | Template.Base64Source;
-
-      /**
-       * One chain ID, or an ordered list of chain IDs for multi-chain templates. For
-       * chain_id, values refer to input chains; for template_id, values refer to chains
-       * in the template file.
-       */
-      chain_id?: string | Array<string>;
+      template_structure: Template.URLSource | Template.TemplateStructureBase64Source;
 
       /**
        * Force the template alignment within threshold.
        */
       force?: boolean;
 
-      /**
-       * One chain ID, or an ordered list of chain IDs for multi-chain templates. For
-       * chain_id, values refer to input chains; for template_id, values refer to chains
-       * in the template file.
-       */
-      template_id?: string | Array<string>;
-
       /**
        * Distance threshold in angstroms used when force is true.
        */
@@ -3249,22 +3242,41 @@ export namespace StructureAndBindingStartParams {
     }
 
     export namespace Template {
+      /**
+       * Mapping from one request chain to the corresponding chain in the template
+       * structure file.
+       */
+      export interface TemplateChain {
+        /**
+         * Chain ID in this prediction request
+         */
+        input_chain_id: string;
+
+        /**
+         * Corresponding chain ID in the template structure file
+         */
+        template_chain_id: string;
+      }
+
       export interface URLSource {
         type: 'url';
 
         url: string;
       }
 
-      export interface Base64Source {
+      export interface TemplateStructureBase64Source {
         /**
-         * Base64-encoded file contents
+         * Base64-encoded template structure file contents
          */
         data: string;
 
         /**
-         * MIME type (e.g., text/csv)
+         * Template structure MIME type
+         *
+         * - `chemical/x-cif` - CIF template structure
+         * - `chemical/x-pdb` - PDB template structure
          */
-        media_type: string;
+        media_type: 'chemical/x-cif' | 'chemical/x-pdb';
 
         type: 'base64';
       }

package/src/version.ts

@@ -1 +1 @@
-export const VERSION = '0.41.0'; // x-release-please-version
+export const VERSION = '0.42.0'; // x-release-please-version

package/version.d.mts

@@ -1,2 +1,2 @@
-export declare const VERSION = "0.41.0";
+export declare const VERSION = "0.42.0";
 //# sourceMappingURL=version.d.mts.map

package/version.d.ts

@@ -1,2 +1,2 @@
-export declare const VERSION = "0.41.0";
+export declare const VERSION = "0.42.0";
 //# sourceMappingURL=version.d.ts.map

package/version.js

@@ -1,5 +1,5 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.VERSION = void 0;
-exports.VERSION = '0.41.0'; // x-release-please-version
+exports.VERSION = '0.42.0'; // x-release-please-version
 //# sourceMappingURL=version.js.map

package/version.mjs

@@ -1,2 +1,2 @@
-export const VERSION = '0.41.0'; // x-release-please-version
+export const VERSION = '0.42.0'; // x-release-please-version
 //# sourceMappingURL=version.mjs.map