bluera-knowledge 0.9.34 → 0.9.36

package/CHANGELOG.md

@@ -2,6 +2,43 @@
 
 All notable changes to this project will be documented in this file. See [commit-and-tag-version](https://github.com/absolute-version/commit-and-tag-version) for commit guidelines.
 
+## [0.9.36](https://github.com/blueraai/bluera-knowledge/compare/v0.9.32...v0.9.36) (2026-01-08)
+
+
+### Bug Fixes
+
+* **bridge:** kill Python process before nullifying to prevent zombie ([393dab3](https://github.com/blueraai/bluera-knowledge/commit/393dab3e45c75fd87c9ecfc1ca92e67b14526e79))
+* **bridge:** mock kill() emits exit event & attach rejection handlers before stop ([d73c6ca](https://github.com/blueraai/bluera-knowledge/commit/d73c6ca6d640c3d15bd82756cabcda832f9ae245))
+* **bridge:** stop() now waits for process to actually exit ([a92de41](https://github.com/blueraai/bluera-knowledge/commit/a92de41c89318fc106f996568ed88505352d5159))
+* **cli:** ensure destroyServices runs before process.exit ([22e4267](https://github.com/blueraai/bluera-knowledge/commit/22e4267b7b9f698de3985a89b9c2b10759cfd49c))
+* **code-unit:** brace counting now handles strings and comments ([1e857bb](https://github.com/blueraai/bluera-knowledge/commit/1e857bb297f357b97a6c067950e62495b3c8fc99))
+* **code-unit:** support complex return types in signature extraction ([3bd2467](https://github.com/blueraai/bluera-knowledge/commit/3bd24675a67e73cc74a0c718f4b5a9e86cd826fb))
+* **job:** validate PID before process.kill to prevent process group kill ([67c540f](https://github.com/blueraai/bluera-knowledge/commit/67c540fef6f2c55c5dca2c824104a91fe19aeff1))
+* **services:** fail fast on corrupted config/registry files ([030f63c](https://github.com/blueraai/bluera-knowledge/commit/030f63c10b0a30bddcd8e9b27b291ab0f53263f1))
+* **tests:** increase timeout for exit code test in CI ([a362dcd](https://github.com/blueraai/bluera-knowledge/commit/a362dcdae32b0c19e757270e5009b0c1c5ead4e4))
+* **tests:** increase timeout for flaky store delete test ([738fb49](https://github.com/blueraai/bluera-knowledge/commit/738fb4975653703d800dee802730dedfdf9e85ba))
+* **watch:** clear pending timeouts on unwatch to prevent timer leak ([4dcafc1](https://github.com/blueraai/bluera-knowledge/commit/4dcafc14417442f6eeed0257cf185e04ae9de12b))
+* **worker:** fail fast on PID file write error ([d92ce42](https://github.com/blueraai/bluera-knowledge/commit/d92ce42eff63cee3c97056ef019f5a52ef699edd))
+* **worker:** prevent division by zero and improve cancellation handling ([b7b40ab](https://github.com/blueraai/bluera-knowledge/commit/b7b40ab950b7ad0fbbe84af243be3138b1072a72))
+
+## [0.9.35](https://github.com/blueraai/bluera-knowledge/compare/v0.9.32...v0.9.35) (2026-01-08)
+
+
+### Bug Fixes
+
+* **bridge:** kill Python process before nullifying to prevent zombie ([393dab3](https://github.com/blueraai/bluera-knowledge/commit/393dab3e45c75fd87c9ecfc1ca92e67b14526e79))
+* **bridge:** mock kill() emits exit event & attach rejection handlers before stop ([d73c6ca](https://github.com/blueraai/bluera-knowledge/commit/d73c6ca6d640c3d15bd82756cabcda832f9ae245))
+* **bridge:** stop() now waits for process to actually exit ([a92de41](https://github.com/blueraai/bluera-knowledge/commit/a92de41c89318fc106f996568ed88505352d5159))
+* **cli:** ensure destroyServices runs before process.exit ([22e4267](https://github.com/blueraai/bluera-knowledge/commit/22e4267b7b9f698de3985a89b9c2b10759cfd49c))
+* **code-unit:** brace counting now handles strings and comments ([1e857bb](https://github.com/blueraai/bluera-knowledge/commit/1e857bb297f357b97a6c067950e62495b3c8fc99))
+* **code-unit:** support complex return types in signature extraction ([3bd2467](https://github.com/blueraai/bluera-knowledge/commit/3bd24675a67e73cc74a0c718f4b5a9e86cd826fb))
+* **job:** validate PID before process.kill to prevent process group kill ([67c540f](https://github.com/blueraai/bluera-knowledge/commit/67c540fef6f2c55c5dca2c824104a91fe19aeff1))
+* **services:** fail fast on corrupted config/registry files ([030f63c](https://github.com/blueraai/bluera-knowledge/commit/030f63c10b0a30bddcd8e9b27b291ab0f53263f1))
+* **tests:** increase timeout for flaky store delete test ([738fb49](https://github.com/blueraai/bluera-knowledge/commit/738fb4975653703d800dee802730dedfdf9e85ba))
+* **watch:** clear pending timeouts on unwatch to prevent timer leak ([4dcafc1](https://github.com/blueraai/bluera-knowledge/commit/4dcafc14417442f6eeed0257cf185e04ae9de12b))
+* **worker:** fail fast on PID file write error ([d92ce42](https://github.com/blueraai/bluera-knowledge/commit/d92ce42eff63cee3c97056ef019f5a52ef699edd))
+* **worker:** prevent division by zero and improve cancellation handling ([b7b40ab](https://github.com/blueraai/bluera-knowledge/commit/b7b40ab950b7ad0fbbe84af243be3138b1072a72))
+
 ## [0.9.34](https://github.com/blueraai/bluera-knowledge/compare/v0.9.32...v0.9.34) (2026-01-08)
 
 

package/dist/workers/background-worker-cli.js

@@ -10,10 +10,6 @@ import {
 } from "../chunk-WFNPNAAP.js";
 import "../chunk-6FHWC36B.js";
 
-// src/workers/background-worker-cli.ts
-import fs from "fs";
-import path from "path";
-
 // src/workers/background-worker.ts
 import { createHash } from "crypto";
 function calculateIndexProgress(current, total, scale = 100) {
@@ -238,6 +234,37 @@ var BackgroundWorker = class {
   }
 };
 
+// src/workers/pid-file.ts
+import fs from "fs";
+import path from "path";
+function writePidFile(pidFile, pid) {
+  try {
+    fs.writeFileSync(pidFile, pid.toString(), "utf-8");
+  } catch (error) {
+    const message = error instanceof Error ? error.message : String(error);
+    throw new Error(
+      `CRITICAL: Failed to write PID file ${pidFile}. Job cannot be cancelled without PID file. Original error: ${message}`
+    );
+  }
+}
+function deletePidFile(pidFile, _context) {
+  try {
+    fs.unlinkSync(pidFile);
+    return { success: true };
+  } catch (error) {
+    if (error instanceof Error && "code" in error && error.code === "ENOENT") {
+      return { success: true };
+    }
+    return {
+      success: false,
+      error: error instanceof Error ? error : new Error(String(error))
+    };
+  }
+}
+function buildPidFilePath(jobsDir, jobId) {
+  return path.join(jobsDir, `${jobId}.pid`);
+}
+
 // src/workers/background-worker-cli.ts
 async function main() {
   const jobId = process.argv[2];
@@ -249,15 +276,16 @@ async function main() {
   }
   const jobService = new JobService(dataDir);
   const services = await createServices(void 0, dataDir);
-  const pidFile = path.join(
+  const pidFile = buildPidFilePath(
     jobService["jobsDir"],
     // Access private field for PID path
-    `${jobId}.pid`
+    jobId
   );
   try {
-    fs.writeFileSync(pidFile, process.pid.toString(), "utf-8");
+    writePidFile(pidFile, process.pid);
   } catch (error) {
-    console.error("Warning: Could not write PID file:", error);
+    console.error(error instanceof Error ? error.message : String(error));
+    process.exit(1);
   }
   process.on("SIGTERM", () => {
     console.log(`[${jobId}] Received SIGTERM, cancelling job...`);
@@ -265,12 +293,11 @@ async function main() {
       status: "cancelled",
       message: "Job cancelled by user"
     });
-    try {
-      if (fs.existsSync(pidFile)) {
-        fs.unlinkSync(pidFile);
-      }
-    } catch (error) {
-      console.error("Warning: Could not remove PID file:", error);
+    const deleteResult = deletePidFile(pidFile, "sigterm");
+    if (!deleteResult.success && deleteResult.error !== void 0) {
+      console.error(
+        `Warning: Could not remove PID file during SIGTERM: ${deleteResult.error.message}`
+      );
     }
     process.exit(0);
   });
@@ -283,23 +310,21 @@ async function main() {
   );
   try {
     await worker.executeJob(jobId);
-    try {
-      if (fs.existsSync(pidFile)) {
-        fs.unlinkSync(pidFile);
-      }
-    } catch (error) {
-      console.error("Warning: Could not remove PID file:", error);
+    const successCleanup = deletePidFile(pidFile, "success");
+    if (!successCleanup.success && successCleanup.error !== void 0) {
+      console.error(
+        `Warning: Could not remove PID file after success: ${successCleanup.error.message}`
+      );
     }
     console.log(`[${jobId}] Job completed successfully`);
     process.exit(0);
   } catch (error) {
     console.error(`[${jobId}] Job failed:`, error);
-    try {
-      if (fs.existsSync(pidFile)) {
-        fs.unlinkSync(pidFile);
-      }
-    } catch (cleanupError) {
-      console.error("Warning: Could not remove PID file:", cleanupError);
+    const failureCleanup = deletePidFile(pidFile, "failure");
+    if (!failureCleanup.success && failureCleanup.error !== void 0) {
+      console.error(
+        `Warning: Could not remove PID file after failure: ${failureCleanup.error.message}`
+      );
     }
     process.exit(1);
   }

package/dist/workers/background-worker-cli.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../../src/workers/background-worker-cli.ts","../../src/workers/background-worker.ts"],"sourcesContent":["#!/usr/bin/env node\nimport fs from 'fs';\nimport path from 'path';\nimport { BackgroundWorker } from './background-worker.js';\nimport { createServices } from '../services/index.js';\nimport { JobService } from '../services/job.service.js';\n\n/**\n * Background worker CLI entry point\n *\n * Usage: background-worker-cli <job-id>\n *\n * This process runs detached from the parent and executes a single job.\n */\n\nasync function main(): Promise<void> {\n  const jobId = process.argv[2];\n  const dataDir = process.env['BLUERA_DATA_DIR'];\n\n  if (jobId === undefined || jobId === '') {\n    console.error('Error: Job ID required');\n    console.error('Usage: background-worker-cli <job-id>');\n    process.exit(1);\n  }\n\n  // Initialize services\n  const jobService = new JobService(dataDir);\n  const services = await createServices(undefined, dataDir);\n\n  // Write PID file for job cancellation\n  const pidFile = path.join(\n    jobService['jobsDir'], // Access private field for PID path\n    `${jobId}.pid`\n  );\n\n  try {\n    fs.writeFileSync(pidFile, process.pid.toString(), 'utf-8');\n  } catch (error) {\n    console.error('Warning: Could not write PID file:', error);\n  }\n\n  // Handle SIGTERM for graceful shutdown\n  process.on('SIGTERM', () => {\n    console.log(`[${jobId}] Received SIGTERM, cancelling job...`);\n    jobService.updateJob(jobId, {\n      status: 'cancelled',\n      message: 'Job cancelled by user',\n    });\n\n    // Clean up PID file\n    try {\n      if (fs.existsSync(pidFile)) {\n        fs.unlinkSync(pidFile);\n      }\n    } catch (error) {\n      console.error('Warning: Could not remove PID file:', error);\n    }\n\n    process.exit(0);\n  });\n\n  // Create worker and execute job\n  const worker = new BackgroundWorker(\n    jobService,\n    services.store,\n    services.index,\n    services.lance,\n    services.embeddings\n  );\n\n  try {\n    await worker.executeJob(jobId);\n\n    // Clean up PID file on success\n    try {\n      if (fs.existsSync(pidFile)) {\n        fs.unlinkSync(pidFile);\n      }\n    } catch (error) {\n      console.error('Warning: Could not remove PID file:', error);\n    }\n\n    console.log(`[${jobId}] Job completed successfully`);\n    process.exit(0);\n  } catch (error) {\n    // Job service already updated with failure status in BackgroundWorker\n    console.error(`[${jobId}] Job failed:`, error);\n\n    // Clean up PID file on failure\n    try {\n      if (fs.existsSync(pidFile)) {\n        fs.unlinkSync(pidFile);\n      }\n    } catch (cleanupError) {\n      console.error('Warning: Could not remove PID file:', cleanupError);\n    }\n\n    process.exit(1);\n  }\n}\n\nmain().catch((error: unknown) => {\n  console.error('Fatal error in background worker:', error);\n  process.exit(1);\n});\n","import { createHash } from 'node:crypto';\nimport { IntelligentCrawler, type CrawlProgress } from '../crawl/intelligent-crawler.js';\nimport { IndexService } from '../services/index.service.js';\nimport { JobService } from '../services/job.service.js';\nimport { StoreService } from '../services/store.service.js';\nimport { createStoreId, createDocumentId } from '../types/brands.js';\nimport type { EmbeddingEngine } from '../db/embeddings.js';\nimport type { LanceStore } from '../db/lance.js';\nimport type { Document } from '../types/document.js';\nimport type { Job } from '../types/job.js';\n\n/**\n * Calculate index progress as a percentage, handling division by zero.\n * @param current - Current number of items processed\n * @param total - Total number of items (may be 0)\n * @param scale - Scale factor for progress (default 100 for 0-100%)\n * @returns Progress value, or 0 if total is 0\n */\nexport function calculateIndexProgress(\n  current: number,\n  total: number,\n  scale: number = 100\n): number {\n  if (total === 0) return 0;\n  return (current / total) * scale;\n}\n\nexport class BackgroundWorker {\n  constructor(\n    private readonly jobService: JobService,\n    private readonly storeService: StoreService,\n    private readonly indexService: IndexService,\n    private readonly lanceStore: LanceStore,\n    private readonly embeddingEngine: EmbeddingEngine\n  ) {}\n\n  /**\n   * Execute a job based on its type\n   */\n  async executeJob(jobId: string): Promise<void> {\n    const job = this.jobService.getJob(jobId);\n\n    if (!job) {\n      throw new Error(`Job ${jobId} not found`);\n    }\n\n    try {\n      // Update to running status\n      this.jobService.updateJob(jobId, {\n        status: 'running',\n        message: `Starting ${job.type} operation...`,\n        progress: 0,\n        details: { startedAt: new Date().toISOString() },\n      });\n\n      // Execute based on job type\n      switch (job.type) {\n        case 'clone':\n          await this.executeCloneJob(job);\n          break;\n        case 'index':\n          await this.executeIndexJob(job);\n          break;\n        case 'crawl':\n          await this.executeCrawlJob(job);\n          break;\n        default:\n          throw new Error(`Unknown job type: ${String(job.type)}`);\n      }\n\n      // Mark as completed\n      this.jobService.updateJob(jobId, {\n        status: 'completed',\n        progress: 100,\n        message: `${job.type} operation completed successfully`,\n        details: { completedAt: new Date().toISOString() },\n      });\n    } catch (error) {\n      // Mark as failed\n      const errorDetails: Record<string, unknown> = {\n        completedAt: new Date().toISOString(),\n      };\n      if (error instanceof Error && error.stack !== undefined) {\n        errorDetails['error'] = error.stack;\n      } else {\n        errorDetails['error'] = String(error);\n      }\n      this.jobService.updateJob(jobId, {\n        status: 'failed',\n        message: error instanceof Error ? error.message : 'Unknown error',\n        details: errorDetails,\n      });\n      throw error;\n    }\n  }\n\n  /**\n   * Execute a clone job (git clone + initial indexing)\n   */\n  private async executeCloneJob(job: Job): Promise<void> {\n    const { storeId } = job.details;\n\n    if (storeId === undefined || typeof storeId !== 'string') {\n      throw new Error('Store ID required for clone job');\n    }\n\n    // Get the store\n    const store = await this.storeService.get(createStoreId(storeId));\n    if (!store) {\n      throw new Error(`Store ${storeId} not found`);\n    }\n\n    // Clone is already done by the time the job is created\n    // (happens in StoreService.create), so we just need to index\n\n    // Update progress - cloning considered done (30%)\n    this.jobService.updateJob(job.id, {\n      status: 'running',\n      message: 'Repository cloned, starting indexing...',\n      progress: 30,\n    });\n\n    // Index the repository with progress updates\n    const result = await this.indexService.indexStore(\n      store,\n      (event: { type: string; current: number; total: number; message: string }) => {\n        // Check if job was cancelled\n        const currentJob = this.jobService.getJob(job.id);\n        if (currentJob?.status === 'cancelled') {\n          throw new Error('Job cancelled by user');\n        }\n\n        // Indexing is 70% of total progress (30-100%)\n        const indexProgress = calculateIndexProgress(event.current, event.total, 70);\n        const totalProgress = 30 + indexProgress;\n\n        this.jobService.updateJob(job.id, {\n          message: `Indexed ${String(event.current)}/${String(event.total)} files`,\n          progress: Math.min(99, totalProgress), // Cap at 99 until fully complete\n          details: {\n            filesProcessed: event.current,\n            totalFiles: event.total,\n          },\n        });\n      }\n    );\n\n    if (!result.success) {\n      throw result.error;\n    }\n  }\n\n  /**\n   * Execute an index job (re-indexing existing store)\n   */\n  private async executeIndexJob(job: Job): Promise<void> {\n    const { storeId } = job.details;\n\n    if (storeId === undefined || typeof storeId !== 'string') {\n      throw new Error('Store ID required for index job');\n    }\n\n    // Get the store\n    const store = await this.storeService.getByIdOrName(createStoreId(storeId));\n    if (!store) {\n      throw new Error(`Store ${storeId} not found`);\n    }\n\n    // Index with progress updates\n    const result = await this.indexService.indexStore(\n      store,\n      (event: { type: string; current: number; total: number; message: string }) => {\n        // Check if job was cancelled\n        const currentJob = this.jobService.getJob(job.id);\n        if (currentJob?.status === 'cancelled') {\n          throw new Error('Job cancelled by user');\n        }\n\n        const progress = calculateIndexProgress(event.current, event.total);\n\n        this.jobService.updateJob(job.id, {\n          message: `Indexed ${String(event.current)}/${String(event.total)} files`,\n          progress: Math.min(99, progress), // Cap at 99 until fully complete\n          details: {\n            filesProcessed: event.current,\n            totalFiles: event.total,\n          },\n        });\n      }\n    );\n\n    if (!result.success) {\n      throw result.error;\n    }\n  }\n\n  /**\n   * Execute a crawl job (web crawling + indexing)\n   */\n  private async executeCrawlJob(job: Job): Promise<void> {\n    const { storeId, url, crawlInstruction, extractInstruction, maxPages, simple, useHeadless } =\n      job.details;\n\n    if (storeId === undefined || typeof storeId !== 'string') {\n      throw new Error('Store ID required for crawl job');\n    }\n    if (url === undefined || typeof url !== 'string') {\n      throw new Error('URL required for crawl job');\n    }\n\n    // Get the store\n    const store = await this.storeService.get(createStoreId(storeId));\n    if (store?.type !== 'web') {\n      throw new Error(`Web store ${storeId} not found`);\n    }\n\n    const resolvedMaxPages = typeof maxPages === 'number' ? maxPages : 50;\n    const crawler = new IntelligentCrawler();\n\n    // Listen for progress events\n    crawler.on('progress', (progress: CrawlProgress) => {\n      // Check if job was cancelled - just return early, for-await loop will throw and finally will cleanup\n      const currentJob = this.jobService.getJob(job.id);\n      if (currentJob?.status === 'cancelled') {\n        return;\n      }\n\n      // Crawling is 80% of total progress (0-80%)\n      const crawlProgress = (progress.pagesVisited / resolvedMaxPages) * 80;\n\n      this.jobService.updateJob(job.id, {\n        message:\n          progress.message ??\n          `Crawling page ${String(progress.pagesVisited)}/${String(resolvedMaxPages)}`,\n        progress: Math.min(80, crawlProgress),\n        details: { pagesCrawled: progress.pagesVisited },\n      });\n    });\n\n    try {\n      await this.lanceStore.initialize(store.id);\n      const docs: Document[] = [];\n\n      // Build crawl options, only including defined values\n      const crawlOptions: {\n        maxPages: number;\n        simple: boolean;\n        useHeadless: boolean;\n        crawlInstruction?: string;\n        extractInstruction?: string;\n      } = {\n        maxPages: resolvedMaxPages,\n        simple: simple ?? false,\n        useHeadless: useHeadless ?? false,\n      };\n      if (crawlInstruction !== undefined) {\n        crawlOptions.crawlInstruction = crawlInstruction;\n      }\n      if (extractInstruction !== undefined) {\n        crawlOptions.extractInstruction = extractInstruction;\n      }\n\n      // Crawl pages using IntelligentCrawler\n      for await (const result of crawler.crawl(url, crawlOptions)) {\n        // Check cancellation between pages\n        const currentJob = this.jobService.getJob(job.id);\n        if (currentJob?.status === 'cancelled') {\n          throw new Error('Job cancelled by user');\n        }\n\n        // Embed and index the content (use extracted if available, otherwise markdown)\n        const contentToEmbed = result.extracted ?? result.markdown;\n        const vector = await this.embeddingEngine.embed(contentToEmbed);\n\n        docs.push({\n          id: createDocumentId(`${store.id}-${createHash('md5').update(result.url).digest('hex')}`),\n          content: contentToEmbed,\n          vector,\n          metadata: {\n            type: 'web',\n            storeId: store.id,\n            url: result.url,\n            title: result.title,\n            extracted: result.extracted !== undefined,\n            depth: result.depth,\n            indexedAt: new Date(),\n          },\n        });\n      }\n\n      // Index all documents (remaining 20%)\n      if (docs.length > 0) {\n        this.jobService.updateJob(job.id, {\n          message: 'Indexing crawled documents...',\n          progress: 85,\n        });\n\n        await this.lanceStore.addDocuments(store.id, docs);\n      }\n\n      this.jobService.updateJob(job.id, {\n        message: `Crawled and indexed ${String(docs.length)} pages`,\n        progress: 100,\n        details: { pagesCrawled: docs.length },\n      });\n    } finally {\n      await crawler.stop();\n    }\n  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error.message : 'Unknown error',\n        details: errorDetails,\n      });\n      throw error;\n    }\n  }\n\n  /**\n   * Execute a clone job (git clone + initial indexing)\n   */\n  private async executeCloneJob(job: Job): Promise<void> {\n    const { storeId } = job.details;\n\n    if (storeId === undefined || typeof storeId !== 'string') {\n      throw new Error('Store ID required for clone job');\n    }\n\n    // Get the store\n    const store = await this.storeService.get(createStoreId(storeId));\n    if (!store) {\n      throw new Error(`Store ${storeId} not found`);\n    }\n\n    // Clone is already done by the time the job is created\n    // (happens in StoreService.create), so we just need to index\n\n    // Update progress - cloning considered done (30%)\n    this.jobService.updateJob(job.id, {\n      status: 'running',\n      message: 'Repository cloned, starting indexing...',\n      progress: 30,\n    });\n\n    // Index the repository with progress updates\n    const result = await this.indexService.indexStore(\n      store,\n      (event: { type: string; current: number; total: number; message: string }) => {\n        // Check if job was cancelled\n        const currentJob = this.jobService.getJob(job.id);\n        if (currentJob?.status === 'cancelled') {\n          throw new Error('Job cancelled by user');\n        }\n\n        // Indexing is 70% of total progress (30-100%)\n        const indexProgress = calculateIndexProgress(event.current, event.total, 70);\n        const totalProgress = 30 + indexProgress;\n\n        this.jobService.updateJob(job.id, {\n          message: `Indexed ${String(event.current)}/${String(event.total)} files`,\n          progress: Math.min(99, totalProgress), // Cap at 99 until fully complete\n          details: {\n            filesProcessed: event.current,\n            totalFiles: event.total,\n          },\n        });\n      }\n    );\n\n    if (!result.success) {\n      throw result.error;\n    }\n  }\n\n  /**\n   * Execute an index job (re-indexing existing store)\n   */\n  private async executeIndexJob(job: Job): Promise<void> {\n    const { storeId } = job.details;\n\n    if (storeId === undefined || typeof storeId !== 'string') {\n      throw new Error('Store ID required for index job');\n    }\n\n    // Get the store\n    const store = await this.storeService.getByIdOrName(createStoreId(storeId));\n    if (!store) {\n      throw new Error(`Store ${storeId} not found`);\n    }\n\n    // Index with progress updates\n    const result = await this.indexService.indexStore(\n      store,\n      (event: { type: string; current: number; total: number; message: string }) => {\n        // Check if job was cancelled\n        const currentJob = this.jobService.getJob(job.id);\n        if (currentJob?.status === 'cancelled') {\n          throw new Error('Job cancelled by user');\n        }\n\n        const progress = calculateIndexProgress(event.current, event.total);\n\n        this.jobService.updateJob(job.id, {\n          message: `Indexed ${String(event.current)}/${String(event.total)} files`,\n          progress: Math.min(99, progress), // Cap at 99 until fully complete\n          details: {\n            filesProcessed: event.current,\n            totalFiles: event.total,\n          },\n        });\n      }\n    );\n\n    if (!result.success) {\n      throw result.error;\n    }\n  }\n\n  /**\n   * Execute a crawl job (web crawling + indexing)\n   */\n  private async executeCrawlJob(job: Job): Promise<void> {\n    const { storeId, url, crawlInstruction, extractInstruction, maxPages, simple, useHeadless } =\n      job.details;\n\n    if (storeId === undefined || typeof storeId !== 'string') {\n      throw new Error('Store ID required for crawl job');\n    }\n    if (url === undefined || typeof url !== 'string') {\n      throw new Error('URL required for crawl job');\n    }\n\n    // Get the store\n    const store = await this.storeService.get(createStoreId(storeId));\n    if (store?.type !== 'web') {\n      throw new Error(`Web store ${storeId} not found`);\n    }\n\n    const resolvedMaxPages = typeof maxPages === 'number' ? maxPages : 50;\n    const crawler = new IntelligentCrawler();\n\n    // Listen for progress events\n    crawler.on('progress', (progress: CrawlProgress) => {\n      // Check if job was cancelled - just return early, for-await loop will throw and finally will cleanup\n      const currentJob = this.jobService.getJob(job.id);\n      if (currentJob?.status === 'cancelled') {\n        return;\n      }\n\n      // Crawling is 80% of total progress (0-80%)\n      const crawlProgress = (progress.pagesVisited / resolvedMaxPages) * 80;\n\n      this.jobService.updateJob(job.id, {\n        message:\n          progress.message ??\n          `Crawling page ${String(progress.pagesVisited)}/${String(resolvedMaxPages)}`,\n        progress: Math.min(80, crawlProgress),\n        details: { pagesCrawled: progress.pagesVisited },\n      });\n    });\n\n    try {\n      await this.lanceStore.initialize(store.id);\n      const docs: Document[] = [];\n\n      // Build crawl options, only including defined values\n      const crawlOptions: {\n        maxPages: number;\n        simple: boolean;\n        useHeadless: boolean;\n        crawlInstruction?: string;\n        extractInstruction?: string;\n      } = {\n        maxPages: resolvedMaxPages,\n        simple: simple ?? false,\n        useHeadless: useHeadless ?? false,\n      };\n      if (crawlInstruction !== undefined) {\n        crawlOptions.crawlInstruction = crawlInstruction;\n      }\n      if (extractInstruction !== undefined) {\n        crawlOptions.extractInstruction = extractInstruction;\n      }\n\n      // Crawl pages using IntelligentCrawler\n      for await (const result of crawler.crawl(url, crawlOptions)) {\n        // Check cancellation between pages\n        const currentJob = this.jobService.getJob(job.id);\n        if (currentJob?.status === 'cancelled') {\n          throw new Error('Job cancelled by user');\n        }\n\n        // Embed and index the content (use extracted if available, otherwise markdown)\n        const contentToEmbed = result.extracted ?? result.markdown;\n        const vector = await this.embeddingEngine.embed(contentToEmbed);\n\n        docs.push({\n          id: createDocumentId(`${store.id}-${createHash('md5').update(result.url).digest('hex')}`),\n          content: contentToEmbed,\n          vector,\n          metadata: {\n            type: 'web',\n            storeId: store.id,\n            url: result.url,\n            title: result.title,\n            extracted: result.extracted !== undefined,\n            depth: result.depth,\n            indexedAt: new Date(),\n          },\n        });\n      }\n\n      // Index all documents (remaining 20%)\n      if (docs.length > 0) {\n        this.jobService.updateJob(job.id, {\n          message: 'Indexing crawled documents...',\n          progress: 85,\n        });\n\n        await this.lanceStore.addDocuments(store.id, docs);\n      }\n\n      this.jobService.updateJob(job.id, {\n        message: `Crawled and indexed ${String(docs.length)} pages`,\n        progress: 100,\n        details: { pagesCrawled: docs.length },\n      });\n    } finally {\n      await crawler.stop();\n    }\n  }\n}\n","import fs from 'fs';\nimport path from 'path';\n\n/**\n * Result of a PID file delete operation.\n * Delete operations are best-effort and should not throw.\n */\nexport interface PidFileResult {\n  success: boolean;\n  error?: Error;\n}\n\n/**\n * Context for PID file deletion - indicates when the delete is happening.\n * Used for logging/debugging purposes.\n */\nexport type PidFileDeleteContext = 'sigterm' | 'success' | 'failure';\n\n/**\n * Write PID file - CRITICAL operation that must succeed.\n *\n * If the PID file cannot be written, the job cannot be cancelled through\n * the job management system. 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};\n  }\n}\n\n/**\n * Build the path to a PID file for a given job.\n *\n * @param jobsDir - Directory where job files are stored\n * @param jobId - Job identifier\n * @returns Absolute path to the PID file\n */\nexport function buildPidFilePath(jobsDir: string, jobId: string): string {\n  return path.join(jobsDir, `${jobId}.pid`);\n}\n","#!/usr/bin/env node\nimport { BackgroundWorker } from './background-worker.js';\nimport { writePidFile, deletePidFile, buildPidFilePath } from './pid-file.js';\nimport { createServices } from '../services/index.js';\nimport { JobService } from '../services/job.service.js';\n\n/**\n * Background worker CLI entry point\n *\n * Usage: background-worker-cli <job-id>\n *\n * This process runs detached from the parent and executes a single job.\n */\n\nasync function main(): Promise<void> {\n  const jobId = process.argv[2];\n  const dataDir = process.env['BLUERA_DATA_DIR'];\n\n  if (jobId === undefined || jobId === '') {\n    console.error('Error: Job ID 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "bluera-knowledge",
-  "version": "0.9.34",
+  "version": "0.9.36",
   "description": "CLI tool for managing knowledge stores with semantic search",
   "type": "module",
   "bin": {

package/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "bluera-knowledge",
-  "version": "0.9.34",
+  "version": "0.9.36",
   "description": "Clone repos, crawl docs, search locally. Fast, authoritative answers for AI coding agents.",
   "commands": "./commands",
   "hooks": "./hooks/hooks.json",

package/src/workers/background-worker-cli.ts

@@ -1,7 +1,6 @@
 #!/usr/bin/env node
-import fs from 'fs';
-import path from 'path';
 import { BackgroundWorker } from './background-worker.js';
+import { writePidFile, deletePidFile, buildPidFilePath } from './pid-file.js';
 import { createServices } from '../services/index.js';
 import { JobService } from '../services/job.service.js';
 
@@ -27,16 +26,18 @@ async function main(): Promise<void> {
   const jobService = new JobService(dataDir);
   const services = await createServices(undefined, dataDir);
 
-  // Write PID file for job cancellation
-  const pidFile = path.join(
+  // Write PID file for job cancellation - CRITICAL: must succeed or job cannot be cancelled
+  const pidFile = buildPidFilePath(
     jobService['jobsDir'], // Access private field for PID path
-    `${jobId}.pid`
+    jobId
   );
 
   try {
-    fs.writeFileSync(pidFile, process.pid.toString(), 'utf-8');
+    writePidFile(pidFile, process.pid);
   } catch (error) {
-    console.error('Warning: Could not write PID file:', error);
+    // CRITICAL: Cannot proceed without PID file - job would be uncancellable
+    console.error(error instanceof Error ? error.message : String(error));
+    process.exit(1);
   }
 
   // Handle SIGTERM for graceful shutdown
@@ -47,13 +48,12 @@ async function main(): Promise<void> {
       message: 'Job cancelled by user',
     });
 
-    // Clean up PID file
-    try {
-      if (fs.existsSync(pidFile)) {
-        fs.unlinkSync(pidFile);
-      }
-    } catch (error) {
-      console.error('Warning: Could not remove PID file:', error);
+    // Clean up PID file (best-effort - don't block shutdown)
+    const deleteResult = deletePidFile(pidFile, 'sigterm');
+    if (!deleteResult.success && deleteResult.error !== undefined) {
+      console.error(
+        `Warning: Could not remove PID file during SIGTERM: ${deleteResult.error.message}`
+      );
     }
 
     process.exit(0);
@@ -71,13 +71,12 @@ async function main(): Promise<void> {
   try {
     await worker.executeJob(jobId);
 
-    // Clean up PID file on success
-    try {
-      if (fs.existsSync(pidFile)) {
-        fs.unlinkSync(pidFile);
-      }
-    } catch (error) {
-      console.error('Warning: Could not remove PID file:', error);
+    // Clean up PID file on success (best-effort - don't change exit code)
+    const successCleanup = deletePidFile(pidFile, 'success');
+    if (!successCleanup.success && successCleanup.error !== undefined) {
+      console.error(
+        `Warning: Could not remove PID file after success: ${successCleanup.error.message}`
+      );
     }
 
     console.log(`[${jobId}] Job completed successfully`);
@@ -86,13 +85,12 @@ async function main(): Promise<void> {
     // Job service already updated with failure status in BackgroundWorker
     console.error(`[${jobId}] Job failed:`, error);
 
-    // Clean up PID file on failure
-    try {
-      if (fs.existsSync(pidFile)) {
-        fs.unlinkSync(pidFile);
-      }
-    } catch (cleanupError) {
-      console.error('Warning: Could not remove PID file:', cleanupError);
+    // Clean up PID file on failure (best-effort - exit code reflects job failure)
+    const failureCleanup = deletePidFile(pidFile, 'failure');
+    if (!failureCleanup.success && failureCleanup.error !== undefined) {
+      console.error(
+        `Warning: Could not remove PID file after failure: ${failureCleanup.error.message}`
+      );
     }
 
     process.exit(1);

package/src/workers/pid-file.test.ts

@@ -0,0 +1,167 @@
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import { mkdtempSync, rmSync, existsSync, chmodSync, writeFileSync, readFileSync } from 'fs';
+import { tmpdir } from 'os';
+import { join } from 'path';
+import { writePidFile, deletePidFile, buildPidFilePath } from './pid-file.js';
+
+/**
+ * PID File Operations Tests
+ *
+ * SAFETY: All tests use fake PID 999999999 - never real PIDs.
+ * This prevents accidentally killing VSCode, terminals, or other processes.
+ */
+describe('PID File Operations', () => {
+  let tempDir: string;
+  let pidFile: string;
+
+  // Fake PID - guaranteed not to be a real process
+  const FAKE_PID = 999999999;
+
+  beforeEach(() => {
+    tempDir = mkdtempSync(join(tmpdir(), 'pid-file-test-'));
+    pidFile = join(tempDir, 'test_job.pid');
+  });
+
+  afterEach(() => {
+    if (existsSync(tempDir)) {
+      // Restore permissions before cleanup (in case test made it read-only)
+      try {
+        chmodSync(tempDir, 0o755);
+      } catch {
+        // Ignore - might not exist
+      }
+      rmSync(tempDir, { recursive: true, force: true });
+    }
+  });
+
+  describe('writePidFile', () => {
+    it('should write PID to file successfully', () => {
+      writePidFile(pidFile, FAKE_PID);
+
+      expect(existsSync(pidFile)).toBe(true);
+      const content = readFileSync(pidFile, 'utf-8');
+      expect(content).toBe('999999999');
+    });
+
+    it('should overwrite existing PID file', () => {
+      writeFileSync(pidFile, '123456', 'utf-8');
+
+      writePidFile(pidFile, FAKE_PID);
+
+      const content = readFileSync(pidFile, 'utf-8');
+      expect(content).toBe('999999999');
+    });
+
+    it('should throw with CRITICAL message when write fails (permission denied)', () => {
+      // Make directory read-only to prevent file creation
+      chmodSync(tempDir, 0o444);
+
+      expect(() => writePidFile(pidFile, FAKE_PID)).toThrow(/CRITICAL/);
+      expect(() => writePidFile(pidFile, FAKE_PID)).toThrow(/Failed to write PID file/);
+      expect(() => writePidFile(pidFile, FAKE_PID)).toThrow(/Job cannot be cancelled/);
+    });
+
+    it('should include file path in error message', () => {
+      chmodSync(tempDir, 0o444);
+
+      try {
+        writePidFile(pidFile, FAKE_PID);
+        expect.fail('Should have thrown');
+      } catch (error) {
+        expect(error).toBeInstanceOf(Error);
+        expect((error as Error).message).toContain(pidFile);
+      }
+    });
+
+    it('should throw when path directory does not exist', () => {
+      const invalidPath = '/nonexistent/directory/test.pid';
+
+      expect(() => writePidFile(invalidPath, FAKE_PID)).toThrow(/CRITICAL/);
+    });
+  });
+
+  describe('deletePidFile', () => {
+    it('should delete PID file successfully', () => {
+      writeFileSync(pidFile, FAKE_PID.toString(), 'utf-8');
+
+      const result = deletePidFile(pidFile, 'success');
+
+      expect(result.success).toBe(true);
+      expect(result.error).toBeUndefined();
+      expect(existsSync(pidFile)).toBe(false);
+    });
+
+    it('should return success when PID file does not exist', () => {
+      // File doesn't exist
+      expect(existsSync(pidFile)).toBe(false);
+
+      const result = deletePidFile(pidFile, 'success');
+
+      expect(result.success).toBe(true);
+      expect(result.error).toBeUndefined();
+    });
+
+    it('should return failure (NOT throw) when delete fails', () => {
+      writeFileSync(pidFile, FAKE_PID.toString(), 'utf-8');
+      // Make directory read-only to prevent deletion
+      chmodSync(tempDir, 0o444);
+
+      // Should NOT throw
+      const result = deletePidFile(pidFile, 'success');
+
+      expect(result.success).toBe(false);
+      expect(result.error).toBeInstanceOf(Error);
+    });
+
+    it('should never throw on delete failure - returns result instead', () => {
+      writeFileSync(pidFile, FAKE_PID.toString(), 'utf-8');
+      chmodSync(tempDir, 0o444);
+
+      // Must not throw - this is best-effort cleanup
+      expect(() => deletePidFile(pidFile, 'failure')).not.toThrow();
+      expect(() => deletePidFile(pidFile, 'sigterm')).not.toThrow();
+      expect(() => deletePidFile(pidFile, 'success')).not.toThrow();
+    });
+
+    it('should handle sigterm context', () => {
+      writeFileSync(pidFile, FAKE_PID.toString(), 'utf-8');
+
+      const result = deletePidFile(pidFile, 'sigterm');
+
+      expect(result.success).toBe(true);
+      expect(existsSync(pidFile)).toBe(false);
+    });
+
+    it('should handle failure context', () => {
+      writeFileSync(pidFile, FAKE_PID.toString(), 'utf-8');
+
+      const result = deletePidFile(pidFile, 'failure');
+
+      expect(result.success).toBe(true);
+      expect(existsSync(pidFile)).toBe(false);
+    });
+  });
+
+  describe('buildPidFilePath', () => {
+    it('should build correct PID file path', () => {
+      const result = buildPidFilePath('/data/jobs', 'job_123');
+
+      expect(result).toBe('/data/jobs/job_123.pid');
+    });
+
+    it('should handle job IDs with various formats', () => {
+      expect(buildPidFilePath('/jobs', 'abc123def')).toBe('/jobs/abc123def.pid');
+      expect(buildPidFilePath('/jobs', 'test-job')).toBe('/jobs/test-job.pid');
+      expect(buildPidFilePath('/jobs', 'job_with_underscore')).toBe(
+        '/jobs/job_with_underscore.pid'
+      );
+    });
+
+    it('should handle paths with trailing slash', () => {
+      // path.join normalizes this
+      const result = buildPidFilePath('/data/jobs/', 'job_123');
+
+      expect(result).toBe('/data/jobs/job_123.pid');
+    });
+  });
+});

package/src/workers/pid-file.ts

@@ -0,0 +1,82 @@
+import fs from 'fs';
+import path from 'path';
+
+/**
+ * Result of a PID file delete operation.
+ * Delete operations are best-effort and should not throw.
+ */
+export interface PidFileResult {
+  success: boolean;
+  error?: Error;
+}
+
+/**
+ * Context for PID file deletion - indicates when the delete is happening.
+ * Used for logging/debugging purposes.
+ */
+export type PidFileDeleteContext = 'sigterm' | 'success' | 'failure';
+
+/**
+ * Write PID file - CRITICAL operation that must succeed.
+ *
+ * If the PID file cannot be written, the job cannot be cancelled through
+ * the job management system. This is a critical failure and the job
+ * should not proceed.
+ *
+ * @param pidFile - Absolute path to the PID file
+ * @param pid - Process ID to write
+ * @throws Error if PID file cannot be written
+ */
+export function writePidFile(pidFile: string, pid: number): void {
+  try {
+    fs.writeFileSync(pidFile, pid.toString(), 'utf-8');
+  } catch (error) {
+    const message = error instanceof Error ? error.message : String(error);
+    throw new Error(
+      `CRITICAL: Failed to write PID file ${pidFile}. ` +
+        `Job cannot be cancelled without PID file. ` +
+        `Original error: ${message}`
+    );
+  }
+}
+
+/**
+ * Delete PID file - best-effort cleanup during shutdown.
+ *
+ * This operation should NEVER throw. During process shutdown (SIGTERM,
+ * job success, job failure), failing to delete a PID file should not
+ * prevent the process from exiting cleanly.
+ *
+ * Stale PID files are cleaned up by JobService.cleanupOldJobs().
+ *
+ * @param pidFile - Absolute path to the PID file
+ * @param _context - Context indicating when the delete is happening (for future logging)
+ * @returns Result indicating success or failure with error details
+ */
+export function deletePidFile(pidFile: string, _context: PidFileDeleteContext): PidFileResult {
+  try {
+    fs.unlinkSync(pidFile);
+    return { success: true };
+  } catch (error) {
+    // ENOENT = file doesn't exist - that's success (nothing to delete)
+    if (error instanceof Error && 'code' in error && error.code === 'ENOENT') {
+      return { success: true };
+    }
+    // Any other error = failure (permission denied, etc.)
+    return {
+      success: false,
+      error: error instanceof Error ? error : new Error(String(error)),
+    };
+  }
+}
+
+/**
+ * Build the path to a PID file for a given job.
+ *
+ * @param jobsDir - Directory where job files are stored
+ * @param jobId - Job identifier
+ * @returns Absolute path to the PID file
+ */
+export function buildPidFilePath(jobsDir: string, jobId: string): string {
+  return path.join(jobsDir, `${jobId}.pid`);
+}

package/tests/integration/cli-consistency.test.ts

@@ -110,7 +110,7 @@ describe('CLI Consistency', () => {
     it('returns exit code 0 on success', () => {
       const result = runCli('store list');
       expect(result.exitCode).toBe(0);
-    });
+    }, 15000);
 
     it('returns non-zero exit code when store not found', () => {
       const result = runCli('store info nonexistent-store');