bio-forge-wasm 0.4.0 → 0.4.1

package/README.md

@@ -50,7 +50,7 @@ BioForge is also available as a library crate. Add it to your `Cargo.toml` depen
 
 ```toml
 [dependencies]
-bio-forge = "0.4.0"
+bio-forge = "0.4.1"
 ```
 
 #### Example: Preparing a PDB Structure

package/bio_forge_wasm_bg.js

@@ -121,7 +121,7 @@ export class Structure {
             const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
             const ptr0 = passArray8ToWasm0(content, wasm.__wbindgen_export);
             const len0 = WASM_VECTOR_LEN;
-            wasm.structure_fromMmcif(retptr, ptr0, len0);
+            wasm.structure_fromMmcifBytes(retptr, ptr0, len0);
             var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
             var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
             var r2 = getDataViewMemory0().getInt32(retptr + 4 * 2, true);
@@ -461,7 +461,7 @@ export class Template {
             const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
             const ptr0 = passArray8ToWasm0(content, wasm.__wbindgen_export);
             const len0 = WASM_VECTOR_LEN;
-            wasm.template_fromMol2(retptr, ptr0, len0);
+            wasm.template_fromMol2Bytes(retptr, ptr0, len0);
             var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
             var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
             var r2 = getDataViewMemory0().getInt32(retptr + 4 * 2, true);
@@ -671,75 +671,75 @@ if (Symbol.dispose) Topology.prototype[Symbol.dispose] = Topology.prototype.free
 export function init() {
     wasm.init();
 }
-export function __wbg_Error_8c4e43fe74559d73(arg0, arg1) {
+export function __wbg_Error_55538483de6e3abe(arg0, arg1) {
     const ret = Error(getStringFromWasm0(arg0, arg1));
     return addHeapObject(ret);
 }
-export function __wbg_Number_04624de7d0e8332d(arg0) {
+export function __wbg_Number_f257194b7002d6f9(arg0) {
     const ret = Number(getObject(arg0));
     return ret;
 }
-export function __wbg_String_8f0eb39a4a4c2f66(arg0, arg1) {
+export function __wbg_String_8564e559799eccda(arg0, arg1) {
     const ret = String(getObject(arg1));
     const ptr1 = passStringToWasm0(ret, wasm.__wbindgen_export, wasm.__wbindgen_export2);
     const len1 = WASM_VECTOR_LEN;
     getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
     getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
 }
-export function __wbg___wbindgen_bigint_get_as_i64_8fcf4ce7f1ca72a2(arg0, arg1) {
+export function __wbg___wbindgen_bigint_get_as_i64_a738e80c0fe6f6a7(arg0, arg1) {
     const v = getObject(arg1);
     const ret = typeof(v) === 'bigint' ? v : undefined;
     getDataViewMemory0().setBigInt64(arg0 + 8 * 1, isLikeNone(ret) ? BigInt(0) : ret, true);
     getDataViewMemory0().setInt32(arg0 + 4 * 0, !isLikeNone(ret), true);
 }
-export function __wbg___wbindgen_boolean_get_bbbb1c18aa2f5e25(arg0) {
+export function __wbg___wbindgen_boolean_get_fe2a24fdfdb4064f(arg0) {
     const v = getObject(arg0);
     const ret = typeof(v) === 'boolean' ? v : undefined;
     return isLikeNone(ret) ? 0xFFFFFF : ret ? 1 : 0;
 }
-export function __wbg___wbindgen_debug_string_0bc8482c6e3508ae(arg0, arg1) {
+export function __wbg___wbindgen_debug_string_d89627202d0155b7(arg0, arg1) {
     const ret = debugString(getObject(arg1));
     const ptr1 = passStringToWasm0(ret, wasm.__wbindgen_export, wasm.__wbindgen_export2);
     const len1 = WASM_VECTOR_LEN;
     getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
     getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
 }
-export function __wbg___wbindgen_in_47fa6863be6f2f25(arg0, arg1) {
+export function __wbg___wbindgen_in_fe3eb6a509f75744(arg0, arg1) {
     const ret = getObject(arg0) in getObject(arg1);
     return ret;
 }
-export function __wbg___wbindgen_is_bigint_31b12575b56f32fc(arg0) {
+export function __wbg___wbindgen_is_bigint_ca270ac12ef71091(arg0) {
     const ret = typeof(getObject(arg0)) === 'bigint';
     return ret;
 }
-export function __wbg___wbindgen_is_function_0095a73b8b156f76(arg0) {
+export function __wbg___wbindgen_is_function_2a95406423ea8626(arg0) {
     const ret = typeof(getObject(arg0)) === 'function';
     return ret;
 }
-export function __wbg___wbindgen_is_object_5ae8e5880f2c1fbd(arg0) {
+export function __wbg___wbindgen_is_object_59a002e76b059312(arg0) {
     const val = getObject(arg0);
     const ret = typeof(val) === 'object' && val !== null;
     return ret;
 }
-export function __wbg___wbindgen_is_undefined_9e4d92534c42d778(arg0) {
+export function __wbg___wbindgen_is_undefined_87a3a837f331fef5(arg0) {
     const ret = getObject(arg0) === undefined;
     return ret;
 }
-export function __wbg___wbindgen_jsval_eq_11888390b0186270(arg0, arg1) {
+export function __wbg___wbindgen_jsval_eq_eedd705f9f2a4f35(arg0, arg1) {
     const ret = getObject(arg0) === getObject(arg1);
     return ret;
 }
-export function __wbg___wbindgen_jsval_loose_eq_9dd77d8cd6671811(arg0, arg1) {
+export function __wbg___wbindgen_jsval_loose_eq_cf851f110c48f9ba(arg0, arg1) {
     const ret = getObject(arg0) == getObject(arg1);
     return ret;
 }
-export function __wbg___wbindgen_number_get_8ff4255516ccad3e(arg0, arg1) {
+export function __wbg___wbindgen_number_get_769f3676dc20c1d7(arg0, arg1) {
     const obj = getObject(arg1);
     const ret = typeof(obj) === 'number' ? obj : undefined;
     getDataViewMemory0().setFloat64(arg0 + 8 * 1, isLikeNone(ret) ? 0 : ret, true);
     getDataViewMemory0().setInt32(arg0 + 4 * 0, !isLikeNone(ret), true);
 }
-export function __wbg___wbindgen_string_get_72fb696202c56729(arg0, arg1) {
+export function __wbg___wbindgen_string_get_f1161390414f9b59(arg0, arg1) {
     const obj = getObject(arg1);
     const ret = typeof(obj) === 'string' ? obj : undefined;
     var ptr1 = isLikeNone(ret) ? 0 : passStringToWasm0(ret, wasm.__wbindgen_export, wasm.__wbindgen_export2);
@@ -747,18 +747,18 @@ export function __wbg___wbindgen_string_get_72fb696202c56729(arg0, arg1) {
     getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
     getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
 }
-export function __wbg___wbindgen_throw_be289d5034ed271b(arg0, arg1) {
+export function __wbg___wbindgen_throw_5549492daedad139(arg0, arg1) {
     throw new Error(getStringFromWasm0(arg0, arg1));
 }
-export function __wbg_call_389efe28435a9388() { return handleError(function (arg0, arg1) {
+export function __wbg_call_6ae20895a60069a2() { return handleError(function (arg0, arg1) {
     const ret = getObject(arg0).call(getObject(arg1));
     return addHeapObject(ret);
 }, arguments); }
-export function __wbg_done_57b39ecd9addfe81(arg0) {
+export function __wbg_done_19f92cb1f8738aba(arg0) {
     const ret = getObject(arg0).done;
     return ret;
 }
-export function __wbg_error_7534b8e9a36f1ab4(arg0, arg1) {
+export function __wbg_error_a6fa202b58aa1cd3(arg0, arg1) {
     let deferred0_0;
     let deferred0_1;
     try {
@@ -769,22 +769,22 @@ export function __wbg_error_7534b8e9a36f1ab4(arg0, arg1) {
         wasm.__wbindgen_export4(deferred0_0, deferred0_1, 1);
     }
 }
-export function __wbg_getRandomValues_1c61fac11405ffdc() { return handleError(function (arg0, arg1) {
+export function __wbg_getRandomValues_3f44b700395062e5() { return handleError(function (arg0, arg1) {
     globalThis.crypto.getRandomValues(getArrayU8FromWasm0(arg0, arg1));
 }, arguments); }
-export function __wbg_get_9b94d73e6221f75c(arg0, arg1) {
-    const ret = getObject(arg0)[arg1 >>> 0];
-    return addHeapObject(ret);
-}
-export function __wbg_get_b3ed3ad4be2bc8ac() { return handleError(function (arg0, arg1) {
+export function __wbg_get_a50328e7325d7f9b() { return handleError(function (arg0, arg1) {
     const ret = Reflect.get(getObject(arg0), getObject(arg1));
     return addHeapObject(ret);
 }, arguments); }
-export function __wbg_get_with_ref_key_1dc361bd10053bfe(arg0, arg1) {
+export function __wbg_get_unchecked_7c6bbabf5b0b1fbf(arg0, arg1) {
+    const ret = getObject(arg0)[arg1 >>> 0];
+    return addHeapObject(ret);
+}
+export function __wbg_get_with_ref_key_6412cf3094599694(arg0, arg1) {
     const ret = getObject(arg0)[getObject(arg1)];
     return addHeapObject(ret);
 }
-export function __wbg_instanceof_ArrayBuffer_c367199e2fa2aa04(arg0) {
+export function __wbg_instanceof_ArrayBuffer_8d855993947fc3a2(arg0) {
     let result;
     try {
         result = getObject(arg0) instanceof ArrayBuffer;
@@ -794,7 +794,7 @@ export function __wbg_instanceof_ArrayBuffer_c367199e2fa2aa04(arg0) {
     const ret = result;
     return ret;
 }
-export function __wbg_instanceof_Uint8Array_9b9075935c74707c(arg0) {
+export function __wbg_instanceof_Uint8Array_ce24d58a5f4bdcc3(arg0) {
     let result;
     try {
         result = getObject(arg0) instanceof Uint8Array;
@@ -804,60 +804,60 @@ export function __wbg_instanceof_Uint8Array_9b9075935c74707c(arg0) {
     const ret = result;
     return ret;
 }
-export function __wbg_isArray_d314bb98fcf08331(arg0) {
+export function __wbg_isArray_867202cf8f195ed8(arg0) {
     const ret = Array.isArray(getObject(arg0));
     return ret;
 }
-export function __wbg_isSafeInteger_bfbc7332a9768d2a(arg0) {
+export function __wbg_isSafeInteger_1dfae065cbfe1915(arg0) {
     const ret = Number.isSafeInteger(getObject(arg0));
     return ret;
 }
-export function __wbg_iterator_6ff6560ca1568e55() {
+export function __wbg_iterator_54661826e186eb6a() {
     const ret = Symbol.iterator;
     return addHeapObject(ret);
 }
-export function __wbg_length_32ed9a279acd054c(arg0) {
+export function __wbg_length_e6e1633fbea6cfa9(arg0) {
     const ret = getObject(arg0).length;
     return ret;
 }
-export function __wbg_length_35a7bace40f36eac(arg0) {
+export function __wbg_length_fae3e439140f48a4(arg0) {
     const ret = getObject(arg0).length;
     return ret;
 }
-export function __wbg_new_361308b2356cecd0() {
-    const ret = new Object();
+export function __wbg_new_1d96678aaacca32e(arg0) {
+    const ret = new Uint8Array(getObject(arg0));
+    return addHeapObject(ret);
+}
+export function __wbg_new_227d7c05414eb861() {
+    const ret = new Error();
     return addHeapObject(ret);
 }
-export function __wbg_new_3eb36ae241fe6f44() {
+export function __wbg_new_4370be21fa2b2f80() {
     const ret = new Array();
     return addHeapObject(ret);
 }
-export function __wbg_new_8a6f238a6ece86ea() {
-    const ret = new Error();
+export function __wbg_new_48e1d86cfd30c8e7() {
+    const ret = new Object();
     return addHeapObject(ret);
 }
-export function __wbg_new_dd2b680c8bf6ae29(arg0) {
-    const ret = new Uint8Array(getObject(arg0));
+export function __wbg_next_55d835fe0ab5b3e7(arg0) {
+    const ret = getObject(arg0).next;
     return addHeapObject(ret);
 }
-export function __wbg_next_3482f54c49e8af19() { return handleError(function (arg0) {
+export function __wbg_next_e34cfb9df1518d7c() { return handleError(function (arg0) {
     const ret = getObject(arg0).next();
     return addHeapObject(ret);
 }, arguments); }
-export function __wbg_next_418f80d8f5303233(arg0) {
-    const ret = getObject(arg0).next;
-    return addHeapObject(ret);
-}
-export function __wbg_prototypesetcall_bdcdcc5842e4d77d(arg0, arg1, arg2) {
+export function __wbg_prototypesetcall_3875d54d12ef2eec(arg0, arg1, arg2) {
     Uint8Array.prototype.set.call(getArrayU8FromWasm0(arg0, arg1), getObject(arg2));
 }
-export function __wbg_set_3f1d0b984ed272ed(arg0, arg1, arg2) {
-    getObject(arg0)[takeObject(arg1)] = takeObject(arg2);
-}
-export function __wbg_set_f43e577aea94465b(arg0, arg1, arg2) {
+export function __wbg_set_4702dfa37c77f492(arg0, arg1, arg2) {
     getObject(arg0)[arg1 >>> 0] = takeObject(arg2);
 }
-export function __wbg_stack_0ed75d68575b0f3c(arg0, arg1) {
+export function __wbg_set_6be42768c690e380(arg0, arg1, arg2) {
+    getObject(arg0)[takeObject(arg1)] = takeObject(arg2);
+}
+export function __wbg_stack_3b0d974bbf31e44f(arg0, arg1) {
     const ret = getObject(arg1).stack;
     const ptr1 = passStringToWasm0(ret, wasm.__wbindgen_export, wasm.__wbindgen_export2);
     const len1 = WASM_VECTOR_LEN;
@@ -868,7 +868,7 @@ export function __wbg_template_unwrap(arg0) {
     const ret = Template.__unwrap(getObject(arg0));
     return ret;
 }
-export function __wbg_value_0546255b415e96c1(arg0) {
+export function __wbg_value_d5b248ce8419bd1b(arg0) {
     const ret = getObject(arg0).value;
     return addHeapObject(ret);
 }
@@ -985,7 +985,7 @@ function debugString(val) {
 }
 
 function dropObject(idx) {
-    if (idx < 132) return;
+    if (idx < 1028) return;
     heap[idx] = heap_next;
     heap_next = idx;
 }
@@ -1026,7 +1026,7 @@ function handleError(f, args) {
     }
 }
 
-let heap = new Array(128).fill(undefined);
+let heap = new Array(1024).fill(undefined);
 heap.push(undefined, null, true, false);
 
 let heap_next = heap.length;

package/package.json

@@ -5,7 +5,7 @@
     "Tony Kan <tianchengkan@gmail.com>"
   ],
   "description": "WebAssembly bindings for BioForge, a pure Rust library for the automated repair, preparation, and topology construction of biological macromolecules.",
-  "version": "0.4.0",
+  "version": "0.4.1",
   "license": "MIT",
   "repository": {
     "type": "git",