bdsa-react-components 0.1.21 → 0.1.25

package/dist/components/ProtocolManager/ProtocolManager.types.d.ts

@@ -0,0 +1,139 @@
+/**
+ * Protocol Manager Types
+ *
+ * Type definitions for protocol management components
+ */
+export type ProtocolType = 'stain' | 'region';
+export interface Protocol {
+    id: string;
+    type: ProtocolType;
+    name: string;
+    description?: string;
+    _isDefault?: boolean;
+    _localModified?: boolean;
+    _remoteVersion?: string;
+    stainType?: string;
+    antibody?: string;
+    technique?: string;
+    phosphoSpecific?: string;
+    dilution?: string;
+    vendor?: string;
+    chromogen?: string;
+    regionType?: string;
+    landmarks?: string[];
+    hemisphere?: string;
+    sliceOrientation?: string;
+    sliceThickness?: number;
+    damage?: string[];
+    [key: string]: unknown;
+}
+export interface ProtocolStorage {
+    load(): Promise<Protocol[]>;
+    save(protocols: Protocol[]): Promise<void>;
+    clear(): Promise<void>;
+}
+export interface DsaSyncAdapter {
+    checkAvailability(): Promise<{
+        isAvailable: boolean;
+        reason?: string;
+    }>;
+    pullProtocols(): Promise<{
+        success: boolean;
+        pulled?: {
+            stainProtocols: number;
+            regionProtocols: number;
+        };
+        error?: string;
+    }>;
+    pushProtocols(stainProtocols: Protocol[], regionProtocols: Protocol[]): Promise<{
+        success: boolean;
+        pushed?: {
+            stainProtocols: number;
+            regionProtocols: number;
+        };
+        error?: string;
+    }>;
+    getSyncStatus(): Promise<{
+        lastSync: string | null;
+        hasLocalChanges: boolean;
+    }>;
+}
+export interface SchemaValidator {
+    loaded?: boolean;
+    loadSchemas(schemaUrl?: string, schemaData?: unknown): Promise<boolean>;
+    getStainTypeOptions(): Array<{
+        value: string;
+        label: string;
+    }>;
+    getAntibodyOptions(stainType: string): string[];
+    getTechniqueOptions(stainType: string): string[];
+    getPhosphoSpecificOptions(stainType: string): string[];
+    getDilutionPattern?(stainType: string): string | null;
+    getVendorPattern?(stainType: string): string | null;
+    getRegionTypeOptions(): Array<{
+        value: string;
+        label: string;
+    }>;
+    getLandmarkOptions(regionType: string): string[];
+    getHemisphereOptions(): string[];
+    getSliceOrientationOptions(): string[];
+    validateStainProtocol(data: Partial<Protocol>): Record<string, string>;
+    validateRegionProtocol(data: Partial<Protocol>): Record<string, string>;
+}
+export interface ProtocolContextValue {
+    protocols: Protocol[];
+    loading: boolean;
+    error: string | null;
+    addProtocol: (protocol: Protocol) => void;
+    updateProtocol: (protocol: Protocol) => void;
+    deleteProtocol: (id: string) => void;
+    clearAllProtocols: () => Promise<void>;
+    getProtocolsByType: (type: ProtocolType) => Protocol[];
+    getProtocolById: (id: string) => Protocol | undefined;
+    stainProtocols: Protocol[];
+    regionProtocols: Protocol[];
+}
+export interface ProtocolProviderProps {
+    children: React.ReactNode;
+    storage?: ProtocolStorage;
+}
+export interface ProtocolCardProps {
+    protocol: Protocol;
+    onEdit?: (protocol: Protocol) => void;
+    onDelete?: (protocol: Protocol) => void;
+    readOnly?: boolean;
+    showSync?: boolean;
+}
+export interface ProtocolListProps {
+    protocols?: Protocol[];
+    type?: ProtocolType;
+    onAdd?: () => void;
+    onEdit?: (protocol: Protocol) => void;
+    onDelete?: (protocol: Protocol) => void;
+    readOnly?: boolean;
+    showSync?: boolean;
+    title?: string;
+    description?: string;
+}
+export interface ProtocolModalProps {
+    protocol: Protocol | null;
+    type: ProtocolType;
+    onSave: (formData: Partial<Protocol>) => Promise<void>;
+    onClose: () => void;
+    schemaValidator: SchemaValidator;
+}
+export interface ProtocolsTabProps {
+    dsaSyncAdapter?: DsaSyncAdapter | null;
+    schemaValidator: SchemaValidator;
+    title?: string;
+    description?: string;
+    showDsaSync?: boolean | null;
+    onProtocolChange?: (data: {
+        stainProtocols: Protocol[];
+        regionProtocols: Protocol[];
+        total: number;
+    }) => void;
+    customProtocolList?: React.ComponentType<ProtocolListProps>;
+    customProtocolModal?: React.ComponentType<ProtocolModalProps>;
+}
+//# sourceMappingURL=ProtocolManager.types.d.ts.map

package/dist/components/ProtocolManager/ProtocolManager.types.d.ts.map

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package/dist/components/ProtocolManager/ProtocolModal.d.ts

@@ -0,0 +1,10 @@
+import { ProtocolModalProps } from './ProtocolManager.types';
+
+/**
+ * ProtocolModal Component
+ *
+ * A modal for creating and editing protocol data with schema-driven validation.
+ */
+export declare function ProtocolModal({ protocol, type, onSave, onClose, schemaValidator, }: ProtocolModalProps): import("react/jsx-runtime").JSX.Element;
+export default ProtocolModal;
+//# sourceMappingURL=ProtocolModal.d.ts.map

package/dist/components/ProtocolManager/ProtocolModal.d.ts.map

@@ -0,0 +1 @@
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package/dist/components/ProtocolManager/ProtocolsTab.d.ts

@@ -0,0 +1,10 @@
+import { ProtocolsTabProps } from './ProtocolManager.types';
+
+/**
+ * ProtocolsTab - Main component for managing stain and region protocols
+ */
+export declare function ProtocolsTab({ dsaSyncAdapter, schemaValidator, // Required - must be provided to load options from BDSA schema
+title, description, showDsaSync, // null = auto-detect from adapter
+onProtocolChange, customProtocolList, customProtocolModal, }: ProtocolsTabProps): import("react/jsx-runtime").JSX.Element;
+export default ProtocolsTab;
+//# sourceMappingURL=ProtocolsTab.d.ts.map

package/dist/components/ProtocolManager/ProtocolsTab.d.ts.map

@@ -0,0 +1 @@
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package/dist/components/ProtocolManager/adapters/DsaSyncAdapter.d.ts

@@ -0,0 +1,76 @@
+import { Protocol, DsaSyncAdapter as IDsaSyncAdapter } from '../ProtocolManager.types';
+
+export declare class DsaSyncAdapter implements IDsaSyncAdapter {
+    /**
+     * Check if DSA sync is available (authenticated and configured)
+     * @returns {Promise<{isAvailable: boolean, reason?: string}>}
+     */
+    checkAvailability(): Promise<{
+        isAvailable: boolean;
+        reason?: string;
+    }>;
+    /**
+     * Pull protocols from DSA server
+     * @returns {Promise<{success: boolean, pulled?: {stainProtocols: number, regionProtocols: number}, error?: string}>}
+     */
+    pullProtocols(): Promise<{
+        success: boolean;
+        pulled?: {
+            stainProtocols: number;
+            regionProtocols: number;
+        };
+        error?: string;
+    }>;
+    /**
+     * Push protocols to DSA server
+     * @param {Protocol[]} _stainProtocols - Array of stain protocol objects
+     * @param {Protocol[]} _regionProtocols - Array of region protocol objects
+     * @returns {Promise<{success: boolean, pushed?: {stainProtocols: number, regionProtocols: number}, error?: string}>}
+     */
+    pushProtocols(_stainProtocols: Protocol[], _regionProtocols: Protocol[]): Promise<{
+        success: boolean;
+        pushed?: {
+            stainProtocols: number;
+            regionProtocols: number;
+        };
+        error?: string;
+    }>;
+    /**
+     * Get sync status information
+     * @returns {Promise<{lastSync: string|null, hasLocalChanges: boolean}>}
+     */
+    getSyncStatus(): Promise<{
+        lastSync: string | null;
+        hasLocalChanges: boolean;
+    }>;
+}
+/**
+ * No-op adapter for applications that don't need DSA sync
+ */
+export declare class NoOpDsaSyncAdapter extends DsaSyncAdapter {
+    checkAvailability(): Promise<{
+        isAvailable: boolean;
+        reason?: string;
+    }>;
+    pullProtocols(): Promise<{
+        success: boolean;
+        pulled?: {
+            stainProtocols: number;
+            regionProtocols: number;
+        };
+        error?: string;
+    }>;
+    pushProtocols(): Promise<{
+        success: boolean;
+        pushed?: {
+            stainProtocols: number;
+            regionProtocols: number;
+        };
+        error?: string;
+    }>;
+    getSyncStatus(): Promise<{
+        lastSync: string | null;
+        hasLocalChanges: boolean;
+    }>;
+}
+//# sourceMappingURL=DsaSyncAdapter.d.ts.map

package/dist/components/ProtocolManager/adapters/DsaSyncAdapter.d.ts.map

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package/dist/components/ProtocolManager/storage/protocolStorage.d.ts

@@ -0,0 +1,39 @@
+import { Protocol, ProtocolStorage } from '../ProtocolManager.types';
+
+/**
+ * Generate a unique ID for a protocol
+ */
+export declare const generateProtocolId: () => string;
+/**
+ * LocalStorage implementation of protocol storage
+ */
+export declare class LocalStorageProtocolStorage implements ProtocolStorage {
+    /**
+     * Load all protocols from storage
+     * @returns {Promise<Protocol[]>} Array of protocol objects
+     */
+    load(): Promise<Protocol[]>;
+    /**
+     * Save all protocols to storage
+     * @param {Protocol[]} protocols - Array of protocol objects
+     */
+    save(protocols: Protocol[]): Promise<void>;
+    /**
+     * Clear all protocols from storage
+     */
+    clear(): Promise<void>;
+}
+/**
+ * In-memory implementation (useful for testing)
+ */
+export declare class InMemoryProtocolStorage implements ProtocolStorage {
+    private protocols;
+    load(): Promise<Protocol[]>;
+    save(protocols: Protocol[]): Promise<void>;
+    clear(): Promise<void>;
+}
+/**
+ * Default storage instance
+ */
+export declare const defaultStorage: LocalStorageProtocolStorage;
+//# sourceMappingURL=protocolStorage.d.ts.map

package/dist/components/ProtocolManager/storage/protocolStorage.d.ts.map

@@ -0,0 +1 @@
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package/dist/components/ProtocolManager/testData.d.ts

@@ -0,0 +1,23 @@
+import { Protocol } from './ProtocolManager.types';
+
+/**
+ * Sample stain protocols
+ */
+export declare const sampleStainProtocols: Protocol[];
+/**
+ * Sample region protocols
+ */
+export declare const sampleRegionProtocols: Protocol[];
+/**
+ * All sample protocols (stain + region)
+ */
+export declare const sampleProtocols: Protocol[];
+/**
+ * Minimal test protocols for quick testing
+ */
+export declare const minimalTestProtocols: Protocol[];
+/**
+ * Helper function to create a protocol with auto-generated ID
+ */
+export declare function createTestProtocol(overrides: Partial<Protocol>): Protocol;
+//# sourceMappingURL=testData.d.ts.map

package/dist/components/ProtocolManager/testData.d.ts.map

@@ -0,0 +1 @@
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package/dist/components/ProtocolManager/utils/schemaValidator.d.ts

@@ -0,0 +1,99 @@
+import { Protocol, SchemaValidator as ISchemaValidator } from '../ProtocolManager.types';
+
+interface BDSASchema {
+    properties?: {
+        stainIDs?: {
+            items?: {
+                properties?: Record<string, StainTypeDefinition>;
+            };
+        };
+        regionIDs?: {
+            properties?: RegionSchemaDefinition;
+        };
+    };
+}
+interface StainTypeDefinition {
+    title?: string;
+    properties?: {
+        antibody?: {
+            enum?: string[];
+        };
+        technique?: {
+            enum?: string[];
+        };
+        'phospho-specific'?: {
+            enum?: string[];
+        };
+        dilution?: {
+            pattern?: string;
+        };
+        vendor?: {
+            pattern?: string;
+        };
+    };
+    required?: string[];
+}
+interface RegionSchemaDefinition {
+    regions?: {
+        properties?: Record<string, RegionTypeDefinition>;
+    };
+    hemisphere?: {
+        enum?: string[];
+    };
+    sliceOrientation?: {
+        enum?: string[];
+    };
+    damage?: {
+        items?: {
+            enum?: string[];
+        };
+    };
+}
+interface RegionTypeDefinition {
+    title?: string;
+    items?: {
+        enum?: string[];
+    };
+}
+export declare class SchemaValidator implements ISchemaValidator {
+    private schema;
+    private stainSchema;
+    private regionSchema;
+    loaded: boolean;
+    /**
+     * Load schemas from a URL or use provided schema object
+     * @param schemaUrl - URL to fetch schema from (e.g., '/bdsa-schema.json')
+     * @param schemaData - Optional schema data object (if already loaded)
+     */
+    loadSchemas(schemaUrl?: string, schemaData?: BDSASchema): Promise<boolean>;
+    getStainTypeOptions(): Array<{
+        value: string;
+        label: string;
+    }>;
+    getStainTypeDefinition(stainType: string): StainTypeDefinition | null;
+    getStainTypeProperties(stainType: string): Record<string, unknown>;
+    getStainTypeRequiredFields(stainType: string): string[];
+    getAntibodyOptions(stainType: string): string[];
+    getTechniqueOptions(stainType: string): string[];
+    getPhosphoSpecificOptions(stainType: string): string[];
+    getDilutionPattern(stainType: string): string | null;
+    getVendorPattern(stainType: string): string | null;
+    getRegionTypeOptions(): Array<{
+        value: string;
+        label: string;
+    }>;
+    getRegionTypeDefinition(regionType: string): RegionTypeDefinition | null;
+    getLandmarkOptions(regionType: string): string[];
+    getHemisphereOptions(): string[];
+    getSliceOrientationOptions(): string[];
+    getDamageOptions(): string[];
+    validateStainProtocol(data: Partial<Protocol>): Record<string, string>;
+    validateRegionProtocol(data: Partial<Protocol>): Record<string, string>;
+    isLoaded(): boolean;
+    getSchema(): BDSASchema | null;
+    getStainSchema(): Record<string, StainTypeDefinition> | null;
+    getRegionSchema(): RegionSchemaDefinition | null;
+}
+export declare function createSchemaValidator(): SchemaValidator;
+export {};
+//# sourceMappingURL=schemaValidator.d.ts.map

package/dist/components/ProtocolManager/utils/schemaValidator.d.ts.map

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package/dist/components/SlideViewer/SlideViewer.d.ts

@@ -1,7 +1,7 @@
 import { default as React } from 'react';
 import { SlideViewerProps } from './SlideViewer.types';
 
-export type { SlideImageInfo, AnnotationFeature, AnnotationInfoProperty, AnnotationInfoConfig, SlideViewerProps } from './SlideViewer.types';
+export type { SlideImageInfo, AnnotationFeature, AnnotationInfoProperty, AnnotationInfoConfig, SlideViewerProps, ViewportBounds, OverlayTileSource } from './SlideViewer.types';
 /**
  * A slide viewer component that integrates OpenSeadragon with Paper.js annotations
  * for viewing Digital Slide Archive images with annotation overlays.

package/dist/components/SlideViewer/SlideViewer.d.ts.map

@@ -1 +1 @@
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