baseguard 1.0.3 → 1.0.4

package/bin/base.js

@@ -1,628 +1,628 @@
-#!/usr/bin/env node
-
-import { Command } from 'commander';
-import chalk from 'chalk';
-import { init, check, fix, config, automation, status, diagnostics } from '../dist/commands/index.js';
-import { showTerminalHeader, showVersionInfo, showGlobalHelp } from '../dist/ui/index.js';
-import { StartupOptimizer } from '../dist/core/startup-optimizer.js';
-
-// Initialize startup optimizations with timeout
-const startupPromise = Promise.race([
-  StartupOptimizer.initialize().then(() => {
-    // Run additional startup optimizations
-    return StartupOptimizer.optimizeStartup();
-  }),
-  new Promise(resolve => setTimeout(resolve, 1000)) // Max 1 second for startup
-]).catch(() => {
-  // Ignore startup errors, continue with CLI
-});
-
-const program = new Command();
-
-program
-  .name('base')
-  .description(chalk.cyan('🛡️ BaseGuard - Never ship incompatible code again\n') + 
-    chalk.dim('Intelligent browser compatibility enforcement with AI-powered analysis and autonomous fixing'))
-  .version('1.0.3')
-  .configureOutput({
-    outputError: (str, write) => write(chalk.red(str))
-  })
-  .configureHelp({
-    helpWidth: 100,
-    sortSubcommands: true
-  })
-  .addHelpText('after', `
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base init                    ${chalk.gray('# Initialize BaseGuard in your project')}
-  ${chalk.dim('$')} base check                   ${chalk.gray('# Check for compatibility violations')}
-  ${chalk.dim('$')} base fix                     ${chalk.gray('# Fix violations with AI assistance')}
-  ${chalk.dim('$')} base config set-keys        ${chalk.gray('# Configure API keys for AI services')}
-  ${chalk.dim('$')} base automation enable      ${chalk.gray('# Enable git hooks for automatic checking')}
-
-${chalk.cyan('Getting Started:')}
-  1. Run ${chalk.white('base init')} to set up BaseGuard in your project
-  2. Configure API keys with ${chalk.white('base config set-keys')} for AI features
-  3. Enable automation with ${chalk.white('base automation enable')}
-  4. Check compatibility with ${chalk.white('base check')}
-
-${chalk.cyan('Documentation:')}
-  ${chalk.blue('https://github.com/baseguard/baseguard#readme')}
-
-${chalk.cyan('Support:')}
-  ${chalk.blue('https://github.com/baseguard/baseguard/issues')}
-`);
-
-// Initialize BaseGuard in project
-program
-  .command('init')
-  .description('Initialize BaseGuard in your project with guided setup')
-  .option('--preset <preset>', 'Browser target preset (baseline-widely, baseline-newly, last-2-years, custom)', 'baseline-widely')
-  .option('--skip-hooks', 'Skip git hook installation during setup')
-  .option('--skip-api-keys', 'Skip API key configuration during setup')
-  .addHelpText('after', `
-${chalk.cyan('Browser Target Presets:')}
-  ${chalk.white('baseline-widely')}   Support features available in Baseline for 30+ months
-  ${chalk.white('baseline-newly')}    Support newly available Baseline features  
-  ${chalk.white('last-2-years')}     Support browsers from the last 2 years
-  ${chalk.white('custom')}           Configure custom browser targets interactively
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base init                           ${chalk.gray('# Interactive setup with baseline-widely preset')}
-  ${chalk.dim('$')} base init --preset baseline-newly  ${chalk.gray('# Use baseline-newly preset')}
-  ${chalk.dim('$')} base init --skip-hooks             ${chalk.gray('# Skip git hook installation')}
-  ${chalk.dim('$')} base init --preset custom          ${chalk.gray('# Configure custom browser targets')}
-
-${chalk.cyan('What this does:')}
-  • Creates .baseguardrc.json configuration file
-  • Sets up browser compatibility targets
-  • Configures API keys for AI services (optional)
-  • Installs git hooks for automation (optional)
-  • Adds .baseguardrc.json to .gitignore for security
-`)
-  .action(async (options) => {
-    await startupPromise;
-    await StartupOptimizer.optimizeForUseCase('init');
-    return init(options);
-  });
-
-// Check for compatibility violations
-program
-  .command('check')
-  .description('Scan code for browser compatibility violations using Baseline data')
-  .option('--strict', 'Exit with error code if violations are found (useful for CI/CD)')
-  .option('--files <pattern>', 'File pattern to check using glob syntax', '**/*.{js,jsx,ts,tsx,vue,svelte,css,html}')
-  .option('--format <format>', 'Output format for results', 'table')
-  .option('--debug', 'Enable debug logging for troubleshooting')
-  .option('--offline', 'Run in offline mode (no network requests)')
-  .addHelpText('after', `
-${chalk.cyan('Output Formats:')}
-  ${chalk.white('table')}    Human-readable table format (default)
-  ${chalk.white('json')}     JSON format for programmatic use
-  ${chalk.white('junit')}    JUnit XML format for CI/CD integration
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base check                              ${chalk.gray('# Check all supported files')}
-  ${chalk.dim('$')} base check --strict                     ${chalk.gray('# Exit with error if violations found')}
-  ${chalk.dim('$')} base check --files "src/**/*.ts"        ${chalk.gray('# Check only TypeScript files in src/')}
-  ${chalk.dim('$')} base check --format json                ${chalk.gray('# Output results as JSON')}
-  ${chalk.dim('$')} base check --files "*.css" --strict     ${chalk.gray('# Check CSS files with strict mode')}
-
-${chalk.cyan('File Patterns:')}
-  Supports glob patterns like:
-  • ${chalk.white('"src/**/*.{js,ts}"')} - All JS/TS files in src/ and subdirectories
-  • ${chalk.white('"components/*.vue"')} - All Vue files in components/
-  • ${chalk.white('"**/*.css"')} - All CSS files in project
-
-${chalk.cyan('What this checks:')}
-  • CSS properties, selectors, and at-rules
-  • JavaScript APIs and ECMAScript features  
-  • HTML elements and attributes
-  • Framework-specific files (React, Vue, Svelte)
-  • Web platform APIs (Canvas, WebGL, WebRTC, WebAssembly, etc.)
-`)
-  .action(async (options) => {
-    await startupPromise;
-    await StartupOptimizer.optimizeForUseCase('check');
-    return check(options);
-  });
-
-// Fix violations with AI
-program
-  .command('fix')
-  .description('Analyze and fix compatibility violations using AI (requires API keys)')
-  .option('--auto', 'Apply fixes automatically without interactive confirmation')
-  .option('--analyze-only', 'Only run AI analysis without generating code fixes')
-  .option('--files <pattern>', 'File pattern to fix using glob syntax', '**/*.{js,jsx,ts,tsx,vue,svelte,css,html}')
-  .addHelpText('after', `
-${chalk.cyan('Prerequisites:')}
-  • Gemini API key (for analysis and fixing) - Get from ${chalk.blue('https://aistudio.google.com')}
-  • Jules API key (optional, for GitHub repos) - Get from ${chalk.blue('https://jules.google.com')}
-  • Choose your coding agent: "base config coding-agent"
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base fix                                 ${chalk.gray('# Interactive fix with confirmation prompts')}
-  ${chalk.dim('$')} base fix --auto                          ${chalk.gray('# Apply all fixes automatically')}
-  ${chalk.dim('$')} base fix --analyze-only                  ${chalk.gray('# Only analyze, don\'t generate fixes')}
-  ${chalk.dim('$')} base fix --files "src/**/*.css"          ${chalk.gray('# Fix only CSS files in src/')}
-
-${chalk.cyan('How it works:')}
-  1. ${chalk.white('Scan')} - Detects compatibility violations using Baseline data
-  2. ${chalk.white('Analyze')} - Gemini AI researches impact and fix strategies  
-  3. ${chalk.white('Fix')} - AI generates progressive enhancement code (Jules or Gemini)
-  4. ${chalk.white('Review')} - Shows preview of changes before applying
-  5. ${chalk.white('Apply')} - Updates files with compatibility fixes
-
-${chalk.cyan('Coding Agents:')}
-  • ${chalk.white('Gemini 2.5 Pro')} - Works with any files, immediate processing
-  • ${chalk.white('Jules')} - GitHub repos only, autonomous cloud processing
-
-${chalk.cyan('Fix Strategies:')}
-  • Progressive enhancement with @supports for CSS
-  • Feature detection for JavaScript APIs
-  • Polyfills and fallbacks for older browsers
-  • Graceful degradation patterns
-
-${chalk.cyan('Setup:')}
-  Run ${chalk.white('base config set-keys')} to configure API keys
-  Run ${chalk.white('base config coding-agent')} to choose your preferred agent
-`)
-  .action(async (options) => {
-    await startupPromise;
-    await StartupOptimizer.optimizeForUseCase('fix');
-    return fix(options);
-  });
-
-// Configuration management
-const configCmd = program
-  .command('config')
-  .description('Manage BaseGuard configuration and settings')
-  .addHelpText('after', `
-${chalk.cyan('Configuration Commands:')}
-  ${chalk.white('show')}        Display detailed configuration with security status
-  ${chalk.white('list')}        Show configuration summary (supports --format json)
-  ${chalk.white('set-keys')}    Interactive API key setup with browser integration
-  ${chalk.white('targets')}     Manage browser compatibility targets
-  ${chalk.white('validate')}    Check configuration file for errors
-  ${chalk.white('automation')}  Configure git automation settings
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base config show                        ${chalk.gray('# Show detailed configuration')}
-  ${chalk.dim('$')} base config set-keys                    ${chalk.gray('# Set up API keys interactively')}
-  ${chalk.dim('$')} base config list --format json          ${chalk.gray('# Export configuration as JSON')}
-  ${chalk.dim('$')} base config targets --preset baseline-widely  ${chalk.gray('# Set browser targets')}
-`);
-
-configCmd
-  .command('show')
-  .description('Display detailed configuration with security and validation status')
-  .addHelpText('after', `
-${chalk.cyan('What this shows:')}
-  • Current browser targets and presets
-  • API key configuration status (without exposing keys)
-  • Automation and git hook settings
-  • Security status (.gitignore configuration)
-  • Configuration validation results
-  • Recommendations for improvements
-`)
-  .action(() => config('show'));
-
-configCmd
-  .command('set-keys')
-  .description('Interactive setup of API keys for AI services')
-  .addHelpText('after', `
-${chalk.cyan('API Services:')}
-  ${chalk.white('Gemini')} - For AI analysis of compatibility issues
-    Get your key: ${chalk.blue('https://aistudio.google.com')}
-  
-  ${chalk.white('Jules')}  - For autonomous code fixing
-    Get your key: ${chalk.blue('https://jules.google.com')}
-
-${chalk.cyan('Security:')}
-  • Keys are stored in .baseguardrc.json
-  • File is automatically added to .gitignore
-  • Keys are validated before saving
-`)
-  .action(() => config('set-keys'));
-
-configCmd
-  .command('targets')
-  .description('Manage browser compatibility targets')
-  .option('--add <target>', 'Add browser target (format: "browser version")')
-  .option('--remove <target>', 'Remove browser target by name')
-  .option('--preset <preset>', 'Set predefined browser targets')
-  .addHelpText('after', `
-${chalk.cyan('Target Formats:')}
-  ${chalk.white('"chrome 100"')}      Minimum Chrome version 100
-  ${chalk.white('"safari baseline"')} Safari with Baseline support only
-  ${chalk.white('"firefox 90"')}     Minimum Firefox version 90
-
-${chalk.cyan('Available Presets:')}
-  ${chalk.white('baseline-widely')}   Features available for 30+ months
-  ${chalk.white('baseline-newly')}    Newly available Baseline features
-  ${chalk.white('last-2-years')}     Browsers from last 2 years
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base config targets --add "chrome 100"
-  ${chalk.dim('$')} base config targets --remove chrome
-  ${chalk.dim('$')} base config targets --preset baseline-widely
-`)
-  .action((options) => config('targets', options));
-
-configCmd
-  .command('list')
-  .description('Show configuration summary with status information')
-  .option('--format <format>', 'Output format (table or json)', 'table')
-  .addHelpText('after', `
-${chalk.cyan('Output Formats:')}
-  ${chalk.white('table')}  Human-readable summary (default)
-  ${chalk.white('json')}   Machine-readable JSON for scripts
-
-${chalk.cyan('Includes:')}
-  • Browser targets and count
-  • API key configuration status
-  • Automation settings
-  • Security and validation status
-`)
-  .action((options) => config('list', options));
-
-configCmd
-  .command('validate')
-  .description('Validate configuration file for errors and inconsistencies')
-  .addHelpText('after', `
-${chalk.cyan('Validation Checks:')}
-  • Configuration file syntax and structure
-  • Browser target format and validity
-  • API key format validation
-  • Automation setting consistency
-  • Required field presence
-
-${chalk.cyan('Exit Codes:')}
-  0 - Configuration is valid
-  1 - Validation errors found
-`)
-  .action(() => config('validate'));
-
-configCmd
-  .command('automation')
-  .description('Configure git automation settings interactively')
-  .addHelpText('after', `
-${chalk.cyan('Automation Settings:')}
-  • Enable/disable git hooks
-  • Choose trigger (pre-commit or pre-push)
-  • Configure auto-analysis with Gemini
-  • Configure auto-fixing with Jules
-  • Set commit blocking behavior
-`)
-  .action(() => config('automation'));
-
-configCmd
-  .command('recover')
-  .description('Attempt automatic recovery of corrupted configuration')
-  .option('--backup', 'Create backup before recovery')
-  .option('--interactive', 'Run interactive recovery wizard')
-  .addHelpText('after', `
-${chalk.cyan('Recovery Features:')}
-  • Automatic detection of configuration issues
-  • Repair of corrupted JSON syntax
-  • Migration from older configuration versions
-  • Validation and structure repair
-  • Backup creation before changes
-
-${chalk.cyan('Recovery Process:')}
-  1. Validates current configuration
-  2. Creates backup if requested
-  3. Attempts automatic repair
-  4. Migrates to current version
-  5. Validates final result
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base config recover                ${chalk.gray('# Automatic recovery')}
-  ${chalk.dim('$')} base config recover --backup       ${chalk.gray('# Create backup first')}
-  ${chalk.dim('$')} base config recover --interactive  ${chalk.gray('# Interactive wizard')}
-`)
-  .action((options) => config('recover', options));
-
-configCmd
-  .command('coding-agent')
-  .description('Manage coding agent selection (Jules vs Gemini)')
-  .option('--agent <agent>', 'Set primary agent (jules or gemini)')
-  .option('--show', 'Show current agent configuration and status')
-  .addHelpText('after', `
-${chalk.cyan('Coding Agents:')}
-  ${chalk.white('Jules')}    - Google's autonomous coding agent (GitHub repos only)
-  ${chalk.white('Gemini')}   - Gemini 2.5 Pro direct API (works with any files)
-
-${chalk.cyan('Agent Comparison:')}
-  Jules:
-    ✅ Autonomous operation in cloud VMs
-    ✅ Full repository context understanding
-    ✅ Asynchronous processing
-    ❌ Requires GitHub repository
-    ❌ Cannot work with local/uncommitted files
-
-  Gemini:
-    ✅ Works with any files (GitHub or not)
-    ✅ Immediate processing
-    ✅ Works with uncommitted/local files
-    ✅ Grounded with real-time web search
-    ⚠️ Requires manual code application
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base config coding-agent --show     ${chalk.gray('# Show current configuration')}
-  ${chalk.dim('$')} base config coding-agent --agent gemini  ${chalk.gray('# Set Gemini as primary')}
-  ${chalk.dim('$')} base config coding-agent --agent jules   ${chalk.gray('# Set Jules as primary')}
-  ${chalk.dim('$')} base config coding-agent             ${chalk.gray('# Interactive selection')}
-`)
-  .action((options) => config('coding-agent', options));
-
-// Automation and git hooks
-const autoCmd = program
-  .command('automation')
-  .alias('auto')
-  .description('Manage git automation and hooks for continuous compatibility checking')
-  .addHelpText('after', `
-${chalk.cyan('Automation Features:')}
-  • Automatic compatibility checking on git operations
-  • AI-powered analysis and fixing integration
-  • Commit blocking when violations are found
-  • Configurable triggers (pre-commit or pre-push)
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base automation enable                  ${chalk.gray('# Enable with interactive setup')}
-  ${chalk.dim('$')} base automation enable --trigger pre-push  ${chalk.gray('# Enable with pre-push trigger')}
-  ${chalk.dim('$')} base automation status                  ${chalk.gray('# Show current automation status')}
-  ${chalk.dim('$')} base automation disable                 ${chalk.gray('# Disable automation and remove hooks')}
-`);
-
-autoCmd
-  .command('enable')
-  .description('Enable git automation with hook installation')
-  .option('--trigger <trigger>', 'When to run checks (pre-commit or pre-push)', 'pre-commit')
-  .option('--auto-fix', 'Enable automatic fixing of violations')
-  .addHelpText('after', `
-${chalk.cyan('Trigger Options:')}
-  ${chalk.white('pre-commit')}  Check before each commit (faster feedback)
-  ${chalk.white('pre-push')}    Check before each push (less frequent)
-
-${chalk.cyan('What this does:')}
-  • Installs git hooks using Husky
-  • Configures BaseGuard to run automatically
-  • Sets up automation preferences
-  • Updates .baseguardrc.json configuration
-
-${chalk.cyan('Requirements:')}
-  • Git repository (run ${chalk.white('git init')} first)
-  • Node.js project with package.json
-`)
-  .action((options) => automation('enable', options));
-
-autoCmd
-  .command('disable')
-  .description('Disable git automation and remove hooks')
-  .addHelpText('after', `
-${chalk.cyan('What this does:')}
-  • Removes git hooks from .husky/ directory
-  • Disables automation in configuration
-  • Preserves other BaseGuard settings
-
-${chalk.cyan('Note:')}
-  You can re-enable automation anytime with ${chalk.white('base automation enable')}
-`)
-  .action(() => automation('disable'));
-
-autoCmd
-  .command('run')
-  .description('Run automation manually (used internally by git hooks)')
-  .option('--trigger <trigger>', 'Trigger context (pre-commit or pre-push)')
-  .addHelpText('after', `
-${chalk.cyan('Usage:')}
-  This command is typically called by git hooks automatically.
-  You can run it manually for testing automation behavior.
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base automation run --trigger pre-commit
-  ${chalk.dim('$')} base automation run --trigger pre-push
-`)
-  .action((options) => automation('run', options));
-
-autoCmd
-  .command('status')
-  .description('Show detailed automation status and configuration')
-  .addHelpText('after', `
-${chalk.cyan('Status Information:')}
-  • Automation enabled/disabled state
-  • Git hook installation status
-  • Trigger configuration (pre-commit/pre-push)
-  • Auto-analysis and auto-fix settings
-  • API key configuration status
-  • Recommendations for setup improvements
-`)
-  .action(() => automation('status'));
-
-autoCmd
-  .command('configure')
-  .description('Interactive configuration of all automation settings')
-  .addHelpText('after', `
-${chalk.cyan('Configuration Options:')}
-  • Enable/disable automation
-  • Choose trigger timing
-  • Configure AI analysis settings
-  • Configure AI fixing settings
-  • Set commit blocking behavior
-
-${chalk.cyan('Interactive Setup:')}
-  Guides you through all automation options with explanations
-  and recommendations based on your current configuration.
-`)
-  .action(() => automation('configure'));
-
-// Browser target management commands (shortcuts)
-program
-  .command('add <target>')
-  .description('Add browser target (shortcut for config targets --add)')
-  .addHelpText('after', `
-${chalk.cyan('Target Format:')}
-  "browser version" - e.g., "chrome 100", "safari 15", "firefox baseline"
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base add "chrome 100"      ${chalk.gray('# Add Chrome 100+ support')}
-  ${chalk.dim('$')} base add "safari baseline" ${chalk.gray('# Add Safari with Baseline support')}
-  ${chalk.dim('$')} base add "firefox 90"     ${chalk.gray('# Add Firefox 90+ support')}
-`)
-  .action((target) => config('targets', { add: target }));
-
-program
-  .command('remove <target>')
-  .description('Remove browser target (shortcut for config targets --remove)')
-  .addHelpText('after', `
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base remove chrome    ${chalk.gray('# Remove all Chrome targets')}
-  ${chalk.dim('$')} base remove safari    ${chalk.gray('# Remove all Safari targets')}
-  ${chalk.dim('$')} base remove firefox   ${chalk.gray('# Remove all Firefox targets')}
-`)
-  .action((target) => config('targets', { remove: target }));
-
-program
-  .command('list')
-  .description('List configuration summary (shortcut for config list)')
-  .option('--format <format>', 'Output format (table or json)', 'table')
-  .addHelpText('after', `
-${chalk.cyan('Quick Status:')}
-  Shows browser targets, API keys, automation status, and security info.
-  
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base list              ${chalk.gray('# Show configuration summary')}
-  ${chalk.dim('$')} base list --format json ${chalk.gray('# Export as JSON')}
-`)
-  .action((options) => config('list', options));
-
-// System status and health
-program
-  .command('status')
-  .description('Show BaseGuard system status and health information')
-  .option('--verbose', 'Show detailed status information')
-  .option('--services', 'Check external service availability')
-  .option('--config', 'Show configuration status and validation')
-  .option('--errors', 'Show error summary and recent issues')
-  .addHelpText('after', `
-${chalk.cyan('Status Information:')}
-  • Overall system health (healthy/degraded/critical)
-  • Component status (configuration, services, errors)
-  • Current degradation mode and limitations
-  • Service availability (network, APIs)
-  • Configuration validation results
-  • Error summary and recent issues
-  • Performance information
-  • Recovery recommendations
-
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base status                    ${chalk.gray('# Show basic system status')}
-  ${chalk.dim('$')} base status --verbose          ${chalk.gray('# Show detailed information')}
-  ${chalk.dim('$')} base status --services         ${chalk.gray('# Check service availability')}
-  ${chalk.dim('$')} base status --config           ${chalk.gray('# Show configuration status')}
-  ${chalk.dim('$')} base status --errors           ${chalk.gray('# Show error information')}
-
-${chalk.cyan('Health Levels:')}
-  ${chalk.green('✅ Healthy')}    All systems operational
-  ${chalk.yellow('⚠️ Degraded')}   Some features limited
-  ${chalk.red('❌ Critical')}   Major issues detected
-`)
-  .action(async (options) => {
-    await startupPromise;
-    return status(options);
-  });
-
-// System diagnostics
-program
-  .command('diagnostics')
-  .alias('diag')
-  .description('Run comprehensive system diagnostics and recovery')
-  .addHelpText('after', `
-${chalk.cyan('Diagnostic Features:')}
-  • Generate detailed debug report
-  • Run configuration recovery wizard
-  • Check service availability
-  • Show error log summary
-  • Clean up old files and caches
-  • Provide recovery recommendations
-
-${chalk.cyan('What this does:')}
-  1. Creates comprehensive debug report
-  2. Attempts automatic configuration recovery
-  3. Checks all external services
-  4. Analyzes error logs for patterns
-  5. Cleans up temporary files
-  6. Provides actionable recommendations
-
-${chalk.cyan('Use when:')}
-  • BaseGuard is not working correctly
-  • You're experiencing frequent errors
-  • Need to troubleshoot issues
-  • Want to optimize performance
-`)
-  .action(async () => {
-    await startupPromise;
-    return diagnostics();
-  });
-
-// Add version command with detailed info
-program
-  .command('version')
-  .description('Show version information and system details')
-  .option('--check-updates', 'Check for available updates')
-  .addHelpText('after', `
-${chalk.cyan('Version Information:')}
-  Shows BaseGuard version, Node.js version, and system information.
-  
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base version                ${chalk.gray('# Show version info')}
-  ${chalk.dim('$')} base version --check-updates ${chalk.gray('# Check for updates')}
-`)
-  .action((options) => showVersionInfo(options));
-
-// Add help command
-program
-  .command('help [command]')
-  .description('Display help information for BaseGuard or specific commands')
-  .addHelpText('after', `
-${chalk.cyan('Examples:')}
-  ${chalk.dim('$')} base help           ${chalk.gray('# Show general help')}
-  ${chalk.dim('$')} base help init      ${chalk.gray('# Show help for init command')}
-  ${chalk.dim('$')} base help config    ${chalk.gray('# Show help for config commands')}
-`)
-  .action((command) => {
-    if (command) {
-      program.commands.find(cmd => cmd.name() === command)?.help();
-    } else {
-      showGlobalHelp();
-    }
-  });
-
-// Handle unknown commands
-program.on('command:*', function (operands) {
-  console.error(chalk.red('❌ Unknown command:'), chalk.white(operands[0]));
-  console.log(chalk.yellow('\n💡 Suggestions:'));
-  console.log(`  • Run ${chalk.white('base help')} to see all available commands`);
-  console.log(`  • Run ${chalk.white('base init')} if you haven't set up BaseGuard yet`);
-  console.log(`  • Check for typos in the command name`);
-  process.exit(1);
-});
-
-// Show help if no command provided
-if (process.argv.length <= 2) {
-  showTerminalHeader();
-  showGlobalHelp();
-  process.exit(0);
-}
-
-// For help commands, don't wait for startup
-const isHelpCommand = process.argv.includes('--help') || process.argv.includes('-h') || process.argv.includes('help');
-if (isHelpCommand) {
-  // Parse immediately without waiting for startup
-  program.parse();
-} else {
-  // Wait for startup for other commands
-  startupPromise.finally(() => {
-    program.parse();
-  });
+#!/usr/bin/env node
+
+import { Command } from 'commander';
+import chalk from 'chalk';
+import { init, check, fix, config, automation, status, diagnostics } from '../dist/commands/index.js';
+import { showTerminalHeader, showVersionInfo, showGlobalHelp } from '../dist/ui/index.js';
+import { StartupOptimizer } from '../dist/core/startup-optimizer.js';
+
+// Initialize startup optimizations with timeout
+const startupPromise = Promise.race([
+  StartupOptimizer.initialize().then(() => {
+    // Run additional startup optimizations
+    return StartupOptimizer.optimizeStartup();
+  }),
+  new Promise(resolve => setTimeout(resolve, 1000)) // Max 1 second for startup
+]).catch(() => {
+  // Ignore startup errors, continue with CLI
+});
+
+const program = new Command();
+
+program
+  .name('base')
+  .description(chalk.cyan('🛡️ BaseGuard - Never ship incompatible code again\n') + 
+    chalk.dim('Intelligent browser compatibility enforcement with AI-powered analysis and autonomous fixing'))
+  .version('1.0.3')
+  .configureOutput({
+    outputError: (str, write) => write(chalk.red(str))
+  })
+  .configureHelp({
+    helpWidth: 100,
+    sortSubcommands: true
+  })
+  .addHelpText('after', `
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base init                    ${chalk.gray('# Initialize BaseGuard in your project')}
+  ${chalk.dim('$')} base check                   ${chalk.gray('# Check for compatibility violations')}
+  ${chalk.dim('$')} base fix                     ${chalk.gray('# Fix violations with AI assistance')}
+  ${chalk.dim('$')} base config set-keys        ${chalk.gray('# Configure API keys for AI services')}
+  ${chalk.dim('$')} base automation enable      ${chalk.gray('# Enable git hooks for automatic checking')}
+
+${chalk.cyan('Getting Started:')}
+  1. Run ${chalk.white('base init')} to set up BaseGuard in your project
+  2. Configure API keys with ${chalk.white('base config set-keys')} for AI features
+  3. Enable automation with ${chalk.white('base automation enable')}
+  4. Check compatibility with ${chalk.white('base check')}
+
+${chalk.cyan('Documentation:')}
+  ${chalk.blue('https://github.com/baseguard/baseguard#readme')}
+
+${chalk.cyan('Support:')}
+  ${chalk.blue('https://github.com/baseguard/baseguard/issues')}
+`);
+
+// Initialize BaseGuard in project
+program
+  .command('init')
+  .description('Initialize BaseGuard in your project with guided setup')
+  .option('--preset <preset>', 'Browser target preset (baseline-widely, baseline-newly, last-2-years, custom)', 'baseline-widely')
+  .option('--skip-hooks', 'Skip git hook installation during setup')
+  .option('--skip-api-keys', 'Skip API key configuration during setup')
+  .addHelpText('after', `
+${chalk.cyan('Browser Target Presets:')}
+  ${chalk.white('baseline-widely')}   Support features available in Baseline for 30+ months
+  ${chalk.white('baseline-newly')}    Support newly available Baseline features  
+  ${chalk.white('last-2-years')}     Support browsers from the last 2 years
+  ${chalk.white('custom')}           Configure custom browser targets interactively
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base init                           ${chalk.gray('# Interactive setup with baseline-widely preset')}
+  ${chalk.dim('$')} base init --preset baseline-newly  ${chalk.gray('# Use baseline-newly preset')}
+  ${chalk.dim('$')} base init --skip-hooks             ${chalk.gray('# Skip git hook installation')}
+  ${chalk.dim('$')} base init --preset custom          ${chalk.gray('# Configure custom browser targets')}
+
+${chalk.cyan('What this does:')}
+  • Creates .baseguardrc.json configuration file
+  • Sets up browser compatibility targets
+  • Configures API keys for AI services (optional)
+  • Installs git hooks for automation (optional)
+  • Adds .baseguardrc.json to .gitignore for security
+`)
+  .action(async (options) => {
+    await startupPromise;
+    await StartupOptimizer.optimizeForUseCase('init');
+    return init(options);
+  });
+
+// Check for compatibility violations
+program
+  .command('check')
+  .description('Scan code for browser compatibility violations using Baseline data')
+  .option('--strict', 'Exit with error code if violations are found (useful for CI/CD)')
+  .option('--files <pattern>', 'File pattern to check using glob syntax', '**/*.{js,jsx,ts,tsx,vue,svelte,css,html}')
+  .option('--format <format>', 'Output format for results', 'table')
+  .option('--debug', 'Enable debug logging for troubleshooting')
+  .option('--offline', 'Run in offline mode (no network requests)')
+  .addHelpText('after', `
+${chalk.cyan('Output Formats:')}
+  ${chalk.white('table')}    Human-readable table format (default)
+  ${chalk.white('json')}     JSON format for programmatic use
+  ${chalk.white('junit')}    JUnit XML format for CI/CD integration
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base check                              ${chalk.gray('# Check all supported files')}
+  ${chalk.dim('$')} base check --strict                     ${chalk.gray('# Exit with error if violations found')}
+  ${chalk.dim('$')} base check --files "src/**/*.ts"        ${chalk.gray('# Check only TypeScript files in src/')}
+  ${chalk.dim('$')} base check --format json                ${chalk.gray('# Output results as JSON')}
+  ${chalk.dim('$')} base check --files "*.css" --strict     ${chalk.gray('# Check CSS files with strict mode')}
+
+${chalk.cyan('File Patterns:')}
+  Supports glob patterns like:
+  • ${chalk.white('"src/**/*.{js,ts}"')} - All JS/TS files in src/ and subdirectories
+  • ${chalk.white('"components/*.vue"')} - All Vue files in components/
+  • ${chalk.white('"**/*.css"')} - All CSS files in project
+
+${chalk.cyan('What this checks:')}
+  • CSS properties, selectors, and at-rules
+  • JavaScript APIs and ECMAScript features  
+  • HTML elements and attributes
+  • Framework-specific files (React, Vue, Svelte)
+  • Web platform APIs (Canvas, WebGL, WebRTC, WebAssembly, etc.)
+`)
+  .action(async (options) => {
+    await startupPromise;
+    await StartupOptimizer.optimizeForUseCase('check');
+    return check(options);
+  });
+
+// Fix violations with AI
+program
+  .command('fix')
+  .description('Analyze and fix compatibility violations using AI (requires API keys)')
+  .option('--auto', 'Apply fixes automatically without interactive confirmation')
+  .option('--analyze-only', 'Only run AI analysis without generating code fixes')
+  .option('--files <pattern>', 'File pattern to fix using glob syntax', '**/*.{js,jsx,ts,tsx,vue,svelte,css,html}')
+  .addHelpText('after', `
+${chalk.cyan('Prerequisites:')}
+  • Gemini API key (for analysis and fixing) - Get from ${chalk.blue('https://aistudio.google.com')}
+  • Jules API key (optional, for GitHub repos) - Get from ${chalk.blue('https://jules.google.com')}
+  • Choose your coding agent: "base config coding-agent"
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base fix                                 ${chalk.gray('# Interactive fix with confirmation prompts')}
+  ${chalk.dim('$')} base fix --auto                          ${chalk.gray('# Apply all fixes automatically')}
+  ${chalk.dim('$')} base fix --analyze-only                  ${chalk.gray('# Only analyze, don\'t generate fixes')}
+  ${chalk.dim('$')} base fix --files "src/**/*.css"          ${chalk.gray('# Fix only CSS files in src/')}
+
+${chalk.cyan('How it works:')}
+  1. ${chalk.white('Scan')} - Detects compatibility violations using Baseline data
+  2. ${chalk.white('Analyze')} - Gemini AI researches impact and fix strategies  
+  3. ${chalk.white('Fix')} - AI generates progressive enhancement code (Jules or Gemini)
+  4. ${chalk.white('Review')} - Shows preview of changes before applying
+  5. ${chalk.white('Apply')} - Updates files with compatibility fixes
+
+${chalk.cyan('Coding Agents:')}
+  • ${chalk.white('Gemini 2.5 Pro')} - Works with any files, immediate processing
+  • ${chalk.white('Jules')} - GitHub repos only, autonomous cloud processing
+
+${chalk.cyan('Fix Strategies:')}
+  • Progressive enhancement with @supports for CSS
+  • Feature detection for JavaScript APIs
+  • Polyfills and fallbacks for older browsers
+  • Graceful degradation patterns
+
+${chalk.cyan('Setup:')}
+  Run ${chalk.white('base config set-keys')} to configure API keys
+  Run ${chalk.white('base config coding-agent')} to choose your preferred agent
+`)
+  .action(async (options) => {
+    await startupPromise;
+    await StartupOptimizer.optimizeForUseCase('fix');
+    return fix(options);
+  });
+
+// Configuration management
+const configCmd = program
+  .command('config')
+  .description('Manage BaseGuard configuration and settings')
+  .addHelpText('after', `
+${chalk.cyan('Configuration Commands:')}
+  ${chalk.white('show')}        Display detailed configuration with security status
+  ${chalk.white('list')}        Show configuration summary (supports --format json)
+  ${chalk.white('set-keys')}    Interactive API key setup with browser integration
+  ${chalk.white('targets')}     Manage browser compatibility targets
+  ${chalk.white('validate')}    Check configuration file for errors
+  ${chalk.white('automation')}  Configure git automation settings
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base config show                        ${chalk.gray('# Show detailed configuration')}
+  ${chalk.dim('$')} base config set-keys                    ${chalk.gray('# Set up API keys interactively')}
+  ${chalk.dim('$')} base config list --format json          ${chalk.gray('# Export configuration as JSON')}
+  ${chalk.dim('$')} base config targets --preset baseline-widely  ${chalk.gray('# Set browser targets')}
+`);
+
+configCmd
+  .command('show')
+  .description('Display detailed configuration with security and validation status')
+  .addHelpText('after', `
+${chalk.cyan('What this shows:')}
+  • Current browser targets and presets
+  • API key configuration status (without exposing keys)
+  • Automation and git hook settings
+  • Security status (.gitignore configuration)
+  • Configuration validation results
+  • Recommendations for improvements
+`)
+  .action(() => config('show'));
+
+configCmd
+  .command('set-keys')
+  .description('Interactive setup of API keys for AI services')
+  .addHelpText('after', `
+${chalk.cyan('API Services:')}
+  ${chalk.white('Gemini')} - For AI analysis of compatibility issues
+    Get your key: ${chalk.blue('https://aistudio.google.com')}
+  
+  ${chalk.white('Jules')}  - For autonomous code fixing
+    Get your key: ${chalk.blue('https://jules.google.com')}
+
+${chalk.cyan('Security:')}
+  • Keys are stored in .baseguardrc.json
+  • File is automatically added to .gitignore
+  • Keys are validated before saving
+`)
+  .action(() => config('set-keys'));
+
+configCmd
+  .command('targets')
+  .description('Manage browser compatibility targets')
+  .option('--add <target>', 'Add browser target (format: "browser version")')
+  .option('--remove <target>', 'Remove browser target by name')
+  .option('--preset <preset>', 'Set predefined browser targets')
+  .addHelpText('after', `
+${chalk.cyan('Target Formats:')}
+  ${chalk.white('"chrome 100"')}      Minimum Chrome version 100
+  ${chalk.white('"safari baseline"')} Safari with Baseline support only
+  ${chalk.white('"firefox 90"')}     Minimum Firefox version 90
+
+${chalk.cyan('Available Presets:')}
+  ${chalk.white('baseline-widely')}   Features available for 30+ months
+  ${chalk.white('baseline-newly')}    Newly available Baseline features
+  ${chalk.white('last-2-years')}     Browsers from last 2 years
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base config targets --add "chrome 100"
+  ${chalk.dim('$')} base config targets --remove chrome
+  ${chalk.dim('$')} base config targets --preset baseline-widely
+`)
+  .action((options) => config('targets', options));
+
+configCmd
+  .command('list')
+  .description('Show configuration summary with status information')
+  .option('--format <format>', 'Output format (table or json)', 'table')
+  .addHelpText('after', `
+${chalk.cyan('Output Formats:')}
+  ${chalk.white('table')}  Human-readable summary (default)
+  ${chalk.white('json')}   Machine-readable JSON for scripts
+
+${chalk.cyan('Includes:')}
+  • Browser targets and count
+  • API key configuration status
+  • Automation settings
+  • Security and validation status
+`)
+  .action((options) => config('list', options));
+
+configCmd
+  .command('validate')
+  .description('Validate configuration file for errors and inconsistencies')
+  .addHelpText('after', `
+${chalk.cyan('Validation Checks:')}
+  • Configuration file syntax and structure
+  • Browser target format and validity
+  • API key format validation
+  • Automation setting consistency
+  • Required field presence
+
+${chalk.cyan('Exit Codes:')}
+  0 - Configuration is valid
+  1 - Validation errors found
+`)
+  .action(() => config('validate'));
+
+configCmd
+  .command('automation')
+  .description('Configure git automation settings interactively')
+  .addHelpText('after', `
+${chalk.cyan('Automation Settings:')}
+  • Enable/disable git hooks
+  • Choose trigger (pre-commit or pre-push)
+  • Configure auto-analysis with Gemini
+  • Configure auto-fixing with Jules
+  • Set commit blocking behavior
+`)
+  .action(() => config('automation'));
+
+configCmd
+  .command('recover')
+  .description('Attempt automatic recovery of corrupted configuration')
+  .option('--backup', 'Create backup before recovery')
+  .option('--interactive', 'Run interactive recovery wizard')
+  .addHelpText('after', `
+${chalk.cyan('Recovery Features:')}
+  • Automatic detection of configuration issues
+  • Repair of corrupted JSON syntax
+  • Migration from older configuration versions
+  • Validation and structure repair
+  • Backup creation before changes
+
+${chalk.cyan('Recovery Process:')}
+  1. Validates current configuration
+  2. Creates backup if requested
+  3. Attempts automatic repair
+  4. Migrates to current version
+  5. Validates final result
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base config recover                ${chalk.gray('# Automatic recovery')}
+  ${chalk.dim('$')} base config recover --backup       ${chalk.gray('# Create backup first')}
+  ${chalk.dim('$')} base config recover --interactive  ${chalk.gray('# Interactive wizard')}
+`)
+  .action((options) => config('recover', options));
+
+configCmd
+  .command('coding-agent')
+  .description('Manage coding agent selection (Jules vs Gemini)')
+  .option('--agent <agent>', 'Set primary agent (jules or gemini)')
+  .option('--show', 'Show current agent configuration and status')
+  .addHelpText('after', `
+${chalk.cyan('Coding Agents:')}
+  ${chalk.white('Jules')}    - Google's autonomous coding agent (GitHub repos only)
+  ${chalk.white('Gemini')}   - Gemini 2.5 Pro direct API (works with any files)
+
+${chalk.cyan('Agent Comparison:')}
+  Jules:
+    ✅ Autonomous operation in cloud VMs
+    ✅ Full repository context understanding
+    ✅ Asynchronous processing
+    ❌ Requires GitHub repository
+    ❌ Cannot work with local/uncommitted files
+
+  Gemini:
+    ✅ Works with any files (GitHub or not)
+    ✅ Immediate processing
+    ✅ Works with uncommitted/local files
+    ✅ Grounded with real-time web search
+    ⚠️ Requires manual code application
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base config coding-agent --show     ${chalk.gray('# Show current configuration')}
+  ${chalk.dim('$')} base config coding-agent --agent gemini  ${chalk.gray('# Set Gemini as primary')}
+  ${chalk.dim('$')} base config coding-agent --agent jules   ${chalk.gray('# Set Jules as primary')}
+  ${chalk.dim('$')} base config coding-agent             ${chalk.gray('# Interactive selection')}
+`)
+  .action((options) => config('coding-agent', options));
+
+// Automation and git hooks
+const autoCmd = program
+  .command('automation')
+  .alias('auto')
+  .description('Manage git automation and hooks for continuous compatibility checking')
+  .addHelpText('after', `
+${chalk.cyan('Automation Features:')}
+  • Automatic compatibility checking on git operations
+  • AI-powered analysis and fixing integration
+  • Commit blocking when violations are found
+  • Configurable triggers (pre-commit or pre-push)
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base automation enable                  ${chalk.gray('# Enable with interactive setup')}
+  ${chalk.dim('$')} base automation enable --trigger pre-push  ${chalk.gray('# Enable with pre-push trigger')}
+  ${chalk.dim('$')} base automation status                  ${chalk.gray('# Show current automation status')}
+  ${chalk.dim('$')} base automation disable                 ${chalk.gray('# Disable automation and remove hooks')}
+`);
+
+autoCmd
+  .command('enable')
+  .description('Enable git automation with hook installation')
+  .option('--trigger <trigger>', 'When to run checks (pre-commit or pre-push)', 'pre-commit')
+  .option('--auto-fix', 'Enable automatic fixing of violations')
+  .addHelpText('after', `
+${chalk.cyan('Trigger Options:')}
+  ${chalk.white('pre-commit')}  Check before each commit (faster feedback)
+  ${chalk.white('pre-push')}    Check before each push (less frequent)
+
+${chalk.cyan('What this does:')}
+  • Installs git hooks using Husky
+  • Configures BaseGuard to run automatically
+  • Sets up automation preferences
+  • Updates .baseguardrc.json configuration
+
+${chalk.cyan('Requirements:')}
+  • Git repository (run ${chalk.white('git init')} first)
+  • Node.js project with package.json
+`)
+  .action((options) => automation('enable', options));
+
+autoCmd
+  .command('disable')
+  .description('Disable git automation and remove hooks')
+  .addHelpText('after', `
+${chalk.cyan('What this does:')}
+  • Removes git hooks from .husky/ directory
+  • Disables automation in configuration
+  • Preserves other BaseGuard settings
+
+${chalk.cyan('Note:')}
+  You can re-enable automation anytime with ${chalk.white('base automation enable')}
+`)
+  .action(() => automation('disable'));
+
+autoCmd
+  .command('run')
+  .description('Run automation manually (used internally by git hooks)')
+  .option('--trigger <trigger>', 'Trigger context (pre-commit or pre-push)')
+  .addHelpText('after', `
+${chalk.cyan('Usage:')}
+  This command is typically called by git hooks automatically.
+  You can run it manually for testing automation behavior.
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base automation run --trigger pre-commit
+  ${chalk.dim('$')} base automation run --trigger pre-push
+`)
+  .action((options) => automation('run', options));
+
+autoCmd
+  .command('status')
+  .description('Show detailed automation status and configuration')
+  .addHelpText('after', `
+${chalk.cyan('Status Information:')}
+  • Automation enabled/disabled state
+  • Git hook installation status
+  • Trigger configuration (pre-commit/pre-push)
+  • Auto-analysis and auto-fix settings
+  • API key configuration status
+  • Recommendations for setup improvements
+`)
+  .action(() => automation('status'));
+
+autoCmd
+  .command('configure')
+  .description('Interactive configuration of all automation settings')
+  .addHelpText('after', `
+${chalk.cyan('Configuration Options:')}
+  • Enable/disable automation
+  • Choose trigger timing
+  • Configure AI analysis settings
+  • Configure AI fixing settings
+  • Set commit blocking behavior
+
+${chalk.cyan('Interactive Setup:')}
+  Guides you through all automation options with explanations
+  and recommendations based on your current configuration.
+`)
+  .action(() => automation('configure'));
+
+// Browser target management commands (shortcuts)
+program
+  .command('add <target>')
+  .description('Add browser target (shortcut for config targets --add)')
+  .addHelpText('after', `
+${chalk.cyan('Target Format:')}
+  "browser version" - e.g., "chrome 100", "safari 15", "firefox baseline"
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base add "chrome 100"      ${chalk.gray('# Add Chrome 100+ support')}
+  ${chalk.dim('$')} base add "safari baseline" ${chalk.gray('# Add Safari with Baseline support')}
+  ${chalk.dim('$')} base add "firefox 90"     ${chalk.gray('# Add Firefox 90+ support')}
+`)
+  .action((target) => config('targets', { add: target }));
+
+program
+  .command('remove <target>')
+  .description('Remove browser target (shortcut for config targets --remove)')
+  .addHelpText('after', `
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base remove chrome    ${chalk.gray('# Remove all Chrome targets')}
+  ${chalk.dim('$')} base remove safari    ${chalk.gray('# Remove all Safari targets')}
+  ${chalk.dim('$')} base remove firefox   ${chalk.gray('# Remove all Firefox targets')}
+`)
+  .action((target) => config('targets', { remove: target }));
+
+program
+  .command('list')
+  .description('List configuration summary (shortcut for config list)')
+  .option('--format <format>', 'Output format (table or json)', 'table')
+  .addHelpText('after', `
+${chalk.cyan('Quick Status:')}
+  Shows browser targets, API keys, automation status, and security info.
+  
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base list              ${chalk.gray('# Show configuration summary')}
+  ${chalk.dim('$')} base list --format json ${chalk.gray('# Export as JSON')}
+`)
+  .action((options) => config('list', options));
+
+// System status and health
+program
+  .command('status')
+  .description('Show BaseGuard system status and health information')
+  .option('--verbose', 'Show detailed status information')
+  .option('--services', 'Check external service availability')
+  .option('--config', 'Show configuration status and validation')
+  .option('--errors', 'Show error summary and recent issues')
+  .addHelpText('after', `
+${chalk.cyan('Status Information:')}
+  • Overall system health (healthy/degraded/critical)
+  • Component status (configuration, services, errors)
+  • Current degradation mode and limitations
+  • Service availability (network, APIs)
+  • Configuration validation results
+  • Error summary and recent issues
+  • Performance information
+  • Recovery recommendations
+
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base status                    ${chalk.gray('# Show basic system status')}
+  ${chalk.dim('$')} base status --verbose          ${chalk.gray('# Show detailed information')}
+  ${chalk.dim('$')} base status --services         ${chalk.gray('# Check service availability')}
+  ${chalk.dim('$')} base status --config           ${chalk.gray('# Show configuration status')}
+  ${chalk.dim('$')} base status --errors           ${chalk.gray('# Show error information')}
+
+${chalk.cyan('Health Levels:')}
+  ${chalk.green('✅ Healthy')}    All systems operational
+  ${chalk.yellow('⚠️ Degraded')}   Some features limited
+  ${chalk.red('❌ Critical')}   Major issues detected
+`)
+  .action(async (options) => {
+    await startupPromise;
+    return status(options);
+  });
+
+// System diagnostics
+program
+  .command('diagnostics')
+  .alias('diag')
+  .description('Run comprehensive system diagnostics and recovery')
+  .addHelpText('after', `
+${chalk.cyan('Diagnostic Features:')}
+  • Generate detailed debug report
+  • Run configuration recovery wizard
+  • Check service availability
+  • Show error log summary
+  • Clean up old files and caches
+  • Provide recovery recommendations
+
+${chalk.cyan('What this does:')}
+  1. Creates comprehensive debug report
+  2. Attempts automatic configuration recovery
+  3. Checks all external services
+  4. Analyzes error logs for patterns
+  5. Cleans up temporary files
+  6. Provides actionable recommendations
+
+${chalk.cyan('Use when:')}
+  • BaseGuard is not working correctly
+  • You're experiencing frequent errors
+  • Need to troubleshoot issues
+  • Want to optimize performance
+`)
+  .action(async () => {
+    await startupPromise;
+    return diagnostics();
+  });
+
+// Add version command with detailed info
+program
+  .command('version')
+  .description('Show version information and system details')
+  .option('--check-updates', 'Check for available updates')
+  .addHelpText('after', `
+${chalk.cyan('Version Information:')}
+  Shows BaseGuard version, Node.js version, and system information.
+  
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base version                ${chalk.gray('# Show version info')}
+  ${chalk.dim('$')} base version --check-updates ${chalk.gray('# Check for updates')}
+`)
+  .action((options) => showVersionInfo(options));
+
+// Add help command
+program
+  .command('help [command]')
+  .description('Display help information for BaseGuard or specific commands')
+  .addHelpText('after', `
+${chalk.cyan('Examples:')}
+  ${chalk.dim('$')} base help           ${chalk.gray('# Show general help')}
+  ${chalk.dim('$')} base help init      ${chalk.gray('# Show help for init command')}
+  ${chalk.dim('$')} base help config    ${chalk.gray('# Show help for config commands')}
+`)
+  .action((command) => {
+    if (command) {
+      program.commands.find(cmd => cmd.name() === command)?.help();
+    } else {
+      showGlobalHelp();
+    }
+  });
+
+// Handle unknown commands
+program.on('command:*', function (operands) {
+  console.error(chalk.red('❌ Unknown command:'), chalk.white(operands[0]));
+  console.log(chalk.yellow('\n💡 Suggestions:'));
+  console.log(`  • Run ${chalk.white('base help')} to see all available commands`);
+  console.log(`  • Run ${chalk.white('base init')} if you haven't set up BaseGuard yet`);
+  console.log(`  • Check for typos in the command name`);
+  process.exit(1);
+});
+
+// Show help if no command provided
+if (process.argv.length <= 2) {
+  showTerminalHeader();
+  showGlobalHelp();
+  process.exit(0);
+}
+
+// For help commands, don't wait for startup
+const isHelpCommand = process.argv.includes('--help') || process.argv.includes('-h') || process.argv.includes('help');
+if (isHelpCommand) {
+  // Parse immediately without waiting for startup
+  program.parse();
+} else {
+  // Wait for startup for other commands
+  startupPromise.finally(() => {
+    program.parse();
+  });
 }