backpack-ontology 0.2.25 → 0.3.0

package/dist/storage/json-file-backend.js

@@ -1,550 +1,12 @@
-import * as fs from "node:fs/promises";
-import * as path from "node:path";
-import { dataDir } from "../core/paths.js";
-function firstStringValue(properties) {
-    for (const value of Object.values(properties)) {
-        if (typeof value === "string")
-            return value;
-    }
-    return null;
-}
-const DEFAULT_META = { activeBranch: "main", snapshotLimit: 20 };
-export class JsonFileBackend {
-    baseDir;
-    constructor(baseDir) {
-        this.baseDir = baseDir ?? dataDir();
-    }
-    // --- Path helpers ---
-    graphsDir() {
-        return path.join(this.baseDir, "graphs");
-    }
-    graphDir(name) {
-        return path.join(this.graphsDir(), name);
-    }
-    metaFile(name) {
-        return path.join(this.graphDir(name), "meta.json");
-    }
-    branchesDir(name) {
-        return path.join(this.graphDir(name), "branches");
-    }
-    branchFile(name, branch) {
-        return path.join(this.branchesDir(name), `${branch}.json`);
-    }
-    snapshotsDir(name, branch) {
-        return path.join(this.graphDir(name), "snapshots", branch);
-    }
-    snapshotFile(name, branch, version) {
-        const padded = String(version).padStart(3, "0");
-        return path.join(this.snapshotsDir(name, branch), `${padded}.json`);
-    }
-    termsFile(name) {
-        return path.join(this.graphDir(name), "terms.json");
-    }
-    snippetsDir(name) {
-        return path.join(this.graphDir(name), "snippets");
-    }
-    snippetFile(name, snippetId) {
-        return path.join(this.snippetsDir(name), `${snippetId}.json`);
-    }
-    // --- Meta helpers ---
-    async loadMeta(name) {
-        try {
-            const raw = await fs.readFile(this.metaFile(name), "utf-8");
-            return JSON.parse(raw);
-        }
-        catch {
-            return { ...DEFAULT_META };
-        }
-    }
-    async saveMeta(name, meta) {
-        const filePath = this.metaFile(name);
-        const tmpPath = filePath + ".tmp";
-        await fs.writeFile(tmpPath, JSON.stringify(meta, null, 2), "utf-8");
-        await fs.rename(tmpPath, filePath);
-    }
-    // --- Migration ---
-    async migrate() {
-        const oldDir = path.join(this.baseDir, "ontologies");
-        const newDir = this.graphsDir();
-        let oldExists = false;
-        try {
-            await fs.access(oldDir);
-            oldExists = true;
-        }
-        catch { }
-        let newExists = false;
-        try {
-            await fs.access(newDir);
-            newExists = true;
-        }
-        catch { }
-        if (!oldExists || newExists)
-            return;
-        console.error("[backpack] migrating ontologies/ → graphs/");
-        let entries;
-        try {
-            entries = await fs.readdir(oldDir);
-        }
-        catch {
-            return;
-        }
-        for (const entry of entries) {
-            const oldOntologyFile = path.join(oldDir, entry, "ontology.json");
-            try {
-                await fs.access(oldOntologyFile);
-            }
-            catch {
-                continue;
-            }
-            const graphDir = path.join(newDir, entry);
-            const branchesDir = path.join(graphDir, "branches");
-            await fs.mkdir(branchesDir, { recursive: true });
-            // Copy ontology.json → branches/main.json
-            const raw = await fs.readFile(oldOntologyFile, "utf-8");
-            const branchFile = path.join(branchesDir, "main.json");
-            const tmpBranch = branchFile + ".tmp";
-            await fs.writeFile(tmpBranch, raw, "utf-8");
-            await fs.rename(tmpBranch, branchFile);
-            // Create meta.json
-            const metaFile = path.join(graphDir, "meta.json");
-            const tmpMeta = metaFile + ".tmp";
-            await fs.writeFile(tmpMeta, JSON.stringify(DEFAULT_META, null, 2), "utf-8");
-            await fs.rename(tmpMeta, metaFile);
-            // Copy terms.json if exists
-            const oldTermsFile = path.join(oldDir, entry, "terms.json");
-            try {
-                const termsRaw = await fs.readFile(oldTermsFile, "utf-8");
-                const newTermsFile = path.join(graphDir, "terms.json");
-                const tmpTerms = newTermsFile + ".tmp";
-                await fs.writeFile(tmpTerms, termsRaw, "utf-8");
-                await fs.rename(tmpTerms, newTermsFile);
-            }
-            catch { }
-            console.error(`[backpack]   migrated: ${entry}`);
-        }
-        await fs.rm(oldDir, { recursive: true });
-        console.error("[backpack] migration complete");
-    }
-    // --- StorageBackend methods ---
-    async initialize() {
-        await this.migrate();
-        await fs.mkdir(this.graphsDir(), { recursive: true });
-    }
-    async listOntologies() {
-        const dir = this.graphsDir();
-        let entries;
-        try {
-            entries = await fs.readdir(dir);
-        }
-        catch {
-            return [];
-        }
-        const summaries = [];
-        for (const entry of entries) {
-            try {
-                const meta = await this.loadMeta(entry);
-                const filePath = this.branchFile(entry, meta.activeBranch);
-                const raw = await fs.readFile(filePath, "utf-8");
-                const data = JSON.parse(raw);
-                const typeCounts = new Map();
-                for (const node of data.nodes) {
-                    typeCounts.set(node.type, (typeCounts.get(node.type) ?? 0) + 1);
-                }
-                summaries.push({
-                    name: data.metadata.name,
-                    description: data.metadata.description,
-                    nodeCount: data.nodes.length,
-                    edgeCount: data.edges.length,
-                    nodeTypes: Array.from(typeCounts.entries()).map(([type, count]) => ({
-                        type,
-                        count,
-                    })),
-                });
-            }
-            catch {
-                // Skip directories that don't have valid data
-            }
-        }
-        return summaries;
-    }
-    async loadOntology(name) {
-        const meta = await this.loadMeta(name);
-        const filePath = this.branchFile(name, meta.activeBranch);
-        try {
-            const raw = await fs.readFile(filePath, "utf-8");
-            return JSON.parse(raw);
-        }
-        catch {
-            throw new Error(`Ontology not found: ${name}`);
-        }
-    }
-    async saveOntology(name, data) {
-        const meta = await this.loadMeta(name);
-        const filePath = this.branchFile(name, meta.activeBranch);
-        const tmpPath = filePath + ".tmp";
-        const json = JSON.stringify(data, null, 2);
-        await fs.writeFile(tmpPath, json, "utf-8");
-        await fs.rename(tmpPath, filePath);
-        this.writeTerms(name, data).catch(() => { });
-    }
-    async writeTerms(name, data) {
-        if (data.nodes.length === 0)
-            return;
-        const typeCounts = new Map();
-        const edgeTypeCounts = new Map();
-        const entities = [];
-        const seenNames = new Set();
-        for (const node of data.nodes) {
-            typeCounts.set(node.type, (typeCounts.get(node.type) ?? 0) + 1);
-            const label = firstStringValue(node.properties);
-            if (label && !seenNames.has(label)) {
-                seenNames.add(label);
-                entities.push({ name: label, type: node.type });
-            }
-        }
-        for (const edge of data.edges) {
-            edgeTypeCounts.set(edge.type, (edgeTypeCounts.get(edge.type) ?? 0) + 1);
-        }
-        const terms = {
-            types: [...typeCounts.entries()]
-                .sort((a, b) => a[0].localeCompare(b[0]))
-                .map(([name, count]) => ({ name, count })),
-            edgeTypes: [...edgeTypeCounts.entries()]
-                .sort((a, b) => a[0].localeCompare(b[0]))
-                .map(([name, count]) => ({ name, count })),
-            entities: entities
-                .sort((a, b) => a.type.localeCompare(b.type) || a.name.localeCompare(b.name))
-                .slice(0, 200),
-        };
-        const filePath = this.termsFile(name);
-        const tmpPath = filePath + ".tmp";
-        await fs.writeFile(tmpPath, JSON.stringify(terms, null, 2), "utf-8");
-        await fs.rename(tmpPath, filePath);
-    }
-    async loadTerms(name) {
-        try {
-            return await fs.readFile(this.termsFile(name), "utf-8");
-        }
-        catch {
-            return null;
-        }
-    }
-    async createOntology(name, description) {
-        if (await this.ontologyExists(name)) {
-            throw new Error(`Ontology already exists: ${name}`);
-        }
-        const now = new Date().toISOString();
-        const data = {
-            metadata: {
-                name,
-                description,
-                createdAt: now,
-                updatedAt: now,
-            },
-            nodes: [],
-            edges: [],
-        };
-        await fs.mkdir(this.branchesDir(name), { recursive: true });
-        await this.saveMeta(name, { ...DEFAULT_META });
-        await this.saveOntology(name, data);
-        return data;
-    }
-    async renameOntology(oldName, newName) {
-        if (!(await this.ontologyExists(oldName))) {
-            throw new Error(`Ontology not found: ${oldName}`);
-        }
-        if (await this.ontologyExists(newName)) {
-            throw new Error(`Ontology already exists: ${newName}`);
-        }
-        // Rename the directory
-        await fs.rename(this.graphDir(oldName), this.graphDir(newName));
-        // Update metadata in the active branch
-        const data = await this.loadOntology(newName);
-        data.metadata.name = newName;
-        data.metadata.updatedAt = new Date().toISOString();
-        await this.saveOntology(newName, data);
-    }
-    async deleteOntology(name) {
-        if (!(await this.ontologyExists(name))) {
-            throw new Error(`Ontology not found: ${name}`);
-        }
-        await fs.rm(this.graphDir(name), { recursive: true });
-    }
-    async ontologyExists(name) {
-        try {
-            const meta = await this.loadMeta(name);
-            await fs.access(this.branchFile(name, meta.activeBranch));
-            return true;
-        }
-        catch {
-            return false;
-        }
-    }
-    // --- Branch methods ---
-    async listBranches(name) {
-        const meta = await this.loadMeta(name);
-        const dir = this.branchesDir(name);
-        let entries;
-        try {
-            entries = await fs.readdir(dir);
-        }
-        catch {
-            return [];
-        }
-        const branches = [];
-        for (const entry of entries) {
-            if (!entry.endsWith(".json"))
-                continue;
-            const branchName = entry.replace(/\.json$/, "");
-            try {
-                const raw = await fs.readFile(path.join(dir, entry), "utf-8");
-                const data = JSON.parse(raw);
-                branches.push({
-                    name: branchName,
-                    nodeCount: data.nodes.length,
-                    edgeCount: data.edges.length,
-                    active: branchName === meta.activeBranch,
-                });
-            }
-            catch { }
-        }
-        return branches;
-    }
-    async createBranch(name, branchName, fromBranch) {
-        const branchFile = this.branchFile(name, branchName);
-        try {
-            await fs.access(branchFile);
-            throw new Error(`Branch already exists: ${branchName}`);
-        }
-        catch (err) {
-            if (err instanceof Error && err.message.startsWith("Branch already exists"))
-                throw err;
-        }
-        const meta = await this.loadMeta(name);
-        const sourceBranch = fromBranch ?? meta.activeBranch;
-        const sourceFile = this.branchFile(name, sourceBranch);
-        const raw = await fs.readFile(sourceFile, "utf-8");
-        await fs.mkdir(this.branchesDir(name), { recursive: true });
-        const tmpPath = branchFile + ".tmp";
-        await fs.writeFile(tmpPath, raw, "utf-8");
-        await fs.rename(tmpPath, branchFile);
-    }
-    async switchBranch(name, branchName) {
-        const branchFile = this.branchFile(name, branchName);
-        try {
-            await fs.access(branchFile);
-        }
-        catch {
-            throw new Error(`Branch not found: ${branchName}`);
-        }
-        const meta = await this.loadMeta(name);
-        meta.activeBranch = branchName;
-        await this.saveMeta(name, meta);
-    }
-    async deleteBranch(name, branchName) {
-        const meta = await this.loadMeta(name);
-        if (meta.activeBranch === branchName) {
-            throw new Error(`Cannot delete the active branch: ${branchName}`);
-        }
-        const branchFile = this.branchFile(name, branchName);
-        try {
-            await fs.access(branchFile);
-        }
-        catch {
-            throw new Error(`Branch not found: ${branchName}`);
-        }
-        await fs.rm(branchFile);
-    }
-    async loadBranch(name, branchName) {
-        const filePath = this.branchFile(name, branchName);
-        try {
-            const raw = await fs.readFile(filePath, "utf-8");
-            return JSON.parse(raw);
-        }
-        catch {
-            throw new Error(`Branch not found: ${branchName}`);
-        }
-    }
-    // --- Snapshot methods ---
-    async createSnapshot(name, label) {
-        const meta = await this.loadMeta(name);
-        const branch = meta.activeBranch;
-        const snapDir = this.snapshotsDir(name, branch);
-        await fs.mkdir(snapDir, { recursive: true });
-        // Determine next version number
-        const existing = await this.listSnapshotFiles(name, branch);
-        const nextVersion = existing.length > 0
-            ? existing[existing.length - 1].version + 1
-            : 1;
-        // Read current branch data
-        const raw = await fs.readFile(this.branchFile(name, branch), "utf-8");
-        const data = JSON.parse(raw);
-        const envelope = {
-            version: nextVersion,
-            timestamp: new Date().toISOString(),
-            branch,
-            data,
-        };
-        if (label)
-            envelope.label = label;
-        const filePath = this.snapshotFile(name, branch, nextVersion);
-        const tmpPath = filePath + ".tmp";
-        await fs.writeFile(tmpPath, JSON.stringify(envelope, null, 2), "utf-8");
-        await fs.rename(tmpPath, filePath);
-        // Prune old snapshots
-        await this.pruneSnapshots(name, branch, meta.snapshotLimit);
-        return nextVersion;
-    }
-    async listSnapshots(name) {
-        const meta = await this.loadMeta(name);
-        const branch = meta.activeBranch;
-        const snapDir = this.snapshotsDir(name, branch);
-        let entries;
-        try {
-            entries = await fs.readdir(snapDir);
-        }
-        catch {
-            return [];
-        }
-        const snapshots = [];
-        for (const entry of entries.sort()) {
-            if (!entry.endsWith(".json"))
-                continue;
-            try {
-                const raw = await fs.readFile(path.join(snapDir, entry), "utf-8");
-                const envelope = JSON.parse(raw);
-                const item = {
-                    version: envelope.version,
-                    timestamp: envelope.timestamp,
-                    nodeCount: envelope.data.nodes.length,
-                    edgeCount: envelope.data.edges.length,
-                };
-                if (envelope.label)
-                    item.label = envelope.label;
-                snapshots.push(item);
-            }
-            catch { }
-        }
-        return snapshots.sort((a, b) => b.version - a.version);
-    }
-    async loadSnapshot(name, version) {
-        const meta = await this.loadMeta(name);
-        const filePath = this.snapshotFile(name, meta.activeBranch, version);
-        try {
-            const raw = await fs.readFile(filePath, "utf-8");
-            const envelope = JSON.parse(raw);
-            return envelope.data;
-        }
-        catch {
-            throw new Error(`Snapshot not found: version ${version}`);
-        }
-    }
-    async rollback(name, version) {
-        const data = await this.loadSnapshot(name, version);
-        await this.saveOntology(name, data);
-    }
-    async getSnapshotLimit(name) {
-        const meta = await this.loadMeta(name);
-        return meta.snapshotLimit;
-    }
-    // --- Snapshot internals ---
-    async listSnapshotFiles(name, branch) {
-        const dir = this.snapshotsDir(name, branch);
-        let entries;
-        try {
-            entries = await fs.readdir(dir);
-        }
-        catch {
-            return [];
-        }
-        return entries
-            .filter((e) => e.endsWith(".json"))
-            .map((e) => ({ version: parseInt(e.replace(/\.json$/, ""), 10), filename: e }))
-            .filter((e) => !isNaN(e.version))
-            .sort((a, b) => a.version - b.version);
-    }
-    async pruneSnapshots(name, branch, limit) {
-        const existing = await this.listSnapshotFiles(name, branch);
-        if (existing.length <= limit)
-            return;
-        const toDelete = existing.slice(0, existing.length - limit);
-        for (const snap of toDelete) {
-            const filePath = path.join(this.snapshotsDir(name, branch), snap.filename);
-            await fs.rm(filePath).catch(() => { });
-        }
-    }
-    // --- Snippet methods ---
-    async saveSnippet(graphName, snippet) {
-        const id = snippet.label.toLowerCase().replace(/[^a-z0-9]+/g, "-").replace(/^-|-$/g, "").substring(0, 50) || "snippet";
-        const data = await this.loadOntology(graphName);
-        const meta = await this.loadMeta(graphName);
-        const nodeSet = new Set(snippet.nodeIds);
-        let resolvedEdgeIds = snippet.edgeIds;
-        if (!resolvedEdgeIds || resolvedEdgeIds.length === 0) {
-            resolvedEdgeIds = data.edges
-                .filter(e => nodeSet.has(e.sourceId) && nodeSet.has(e.targetId))
-                .map(e => e.id);
-        }
-        const edgeSet = new Set(resolvedEdgeIds);
-        const snippetData = {
-            id,
-            label: snippet.label,
-            description: snippet.description ?? "",
-            parentGraph: graphName,
-            parentBranch: meta.activeBranch,
-            nodeIds: snippet.nodeIds,
-            edgeIds: resolvedEdgeIds,
-            nodes: data.nodes.filter(n => nodeSet.has(n.id)),
-            edges: data.edges.filter(e => edgeSet.has(e.id)),
-            nodeCount: snippet.nodeIds.length,
-            edgeCount: resolvedEdgeIds.length,
-            createdAt: new Date().toISOString(),
-        };
-        const dir = this.snippetsDir(graphName);
-        await fs.mkdir(dir, { recursive: true });
-        const filePath = this.snippetFile(graphName, id);
-        const tmpPath = filePath + ".tmp";
-        await fs.writeFile(tmpPath, JSON.stringify(snippetData, null, 2), "utf-8");
-        await fs.rename(tmpPath, filePath);
-        return id;
-    }
-    async listSnippets(graphName) {
-        const dir = this.snippetsDir(graphName);
-        let entries;
-        try {
-            entries = await fs.readdir(dir);
-        }
-        catch {
-            return [];
-        }
-        const snippets = [];
-        for (const entry of entries.sort()) {
-            if (!entry.endsWith(".json"))
-                continue;
-            try {
-                const raw = await fs.readFile(path.join(dir, entry), "utf-8");
-                const data = JSON.parse(raw);
-                snippets.push({
-                    id: data.id,
-                    label: data.label,
-                    description: data.description ?? "",
-                    nodeCount: data.nodeCount ?? data.nodes?.length ?? 0,
-                    edgeCount: data.edgeCount ?? data.edges?.length ?? 0,
-                    createdAt: data.createdAt,
-                });
-            }
-            catch { }
-        }
-        return snippets;
-    }
-    async loadSnippet(graphName, snippetId) {
-        const filePath = this.snippetFile(graphName, snippetId);
-        const raw = await fs.readFile(filePath, "utf-8");
-        return JSON.parse(raw);
-    }
-    async deleteSnippet(graphName, snippetId) {
-        const filePath = this.snippetFile(graphName, snippetId);
-        await fs.rm(filePath);
-    }
-}
+// JsonFileBackend is an alias for EventSourcedBackend.
+//
+// The original JsonFileBackend stored each graph as a single monolithic
+// JSON file under branches/<branch>.json. That implementation was
+// replaced by event-sourced storage in v0.3.0 (Phase 2 of the
+// architectural reset). The class name is preserved for backward
+// compatibility with downstream consumers like backpack-viewer that
+// import { JsonFileBackend } from the package.
+//
+// New code should prefer EventSourcedBackend directly.
+export { EventSourcedBackend as JsonFileBackend } from "./event-sourced-backend.js";
 //# sourceMappingURL=json-file-backend.js.map

package/dist/storage/json-file-backend.js.map

@@ -1 +1 @@
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+{"version":3,"file":"json-file-backend.js","sourceRoot":"","sources":["../../src/storage/json-file-backend.ts"],"names":[],"mappings":"AAAA,uDAAuD;AACvD,EAAE;AACF,wEAAwE;AACxE,kEAAkE;AAClE,8DAA8D;AAC9D,iEAAiE;AACjE,oEAAoE;AACpE,+CAA+C;AAC/C,EAAE;AACF,uDAAuD;AAEvD,OAAO,EAAE,mBAAmB,IAAI,eAAe,EAAE,MAAM,4BAA4B,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "backpack-ontology",
-  "version": "0.2.25",
+  "version": "0.3.0",
   "description": "A persistent learning graph engine for Claude Code via MCP — structured knowledge that carries forward across sessions",
   "license": "Apache-2.0",
   "author": "Noah Irzinger",
@@ -10,13 +10,13 @@
     "backpack-local": "./dist/bin/backpack.js",
     "backpack-sync": "./dist/bin/backpack-sync.js",
     "backpack-init": "./dist/bin/init.js",
+    "backpack-benchmark": "./dist/bin/backpack-benchmark.js",
     "backpack": "./dist/bin/backpack.js"
   },
   "main": "./dist/index.js",
   "types": "./dist/index.d.ts",
   "files": [
-    "dist",
-    "hooks"
+    "dist"
   ],
   "scripts": {
     "build": "tsc",

package/hooks/auto-capture-prompt.md

@@ -1,40 +0,0 @@
-You are a knowledge-capture agent for Backpack, a learning graph system. Your job is to review the conversation that just happened and decide whether meaningful knowledge should be preserved in a learning graph.
-
-## Instructions
-
-1. **Review the conversation transcript** — understand what was discussed, decided, or worked on.
-
-2. **Decide if anything is worth capturing.** Look for:
-   - **Business knowledge**: client details, vendor info, pricing, partnerships, workflows
-   - **Technical knowledge**: architecture, APIs, data flows, integrations, design decisions
-   - **Domain knowledge**: industry concepts, terminology, regulations, best practices
-   - **Operational knowledge**: decisions made, problems solved, processes established, conventions agreed upon
-   - **Relationships**: how people, systems, concepts, or processes connect to each other
-
-3. **Skip trivial interactions.** Do NOT capture:
-   - Simple Q&A with no lasting value
-   - Debugging sessions that led nowhere
-   - Casual conversation or greetings
-   - Knowledge that was already captured in a previous pass
-   - Temporary state or in-progress work that will change
-
-4. **If there IS something worth capturing:**
-   a. Call `backpack_list` to see existing learning graphs
-   b. Call `backpack_describe` on relevant learning graphs to check what's already there
-   c. Decide: update an existing learning graph (if the topic fits) or create a new one (if the topic is distinct)
-   d. Use `backpack_import_nodes` for efficient bulk node creation
-   e. Use `backpack_add_edge` to create relationships between nodes
-   f. Use clear, descriptive node types and edge types that make the graph readable
-
-5. **If there is NOTHING worth capturing**, simply stop. Do not force it.
-
-6. **After making updates**, briefly tell the user what was added to their learning graph and suggest they can visualize it:
-   > "Your backpack was updated with [brief summary]. View it by running `npx backpack-viewer` and opening http://localhost:5173"
-
-## Guidelines for good entries
-
-- **Node types** should be clear nouns: `Person`, `Company`, `API`, `Decision`, `Process`, `Concept`, `Tool`, `Service`, `Regulation`, etc.
-- **Edge types** should be clear relationships: `WORKS_WITH`, `DEPENDS_ON`, `DECIDED_TO`, `MANAGES`, `IMPLEMENTS`, `RELATES_TO`, etc.
-- **Properties** should include enough context to be useful later: names, descriptions, dates, reasons, status.
-- **Be selective but thorough** — capture the important things well rather than everything poorly.
-- **Prefer updating existing nodes** over creating duplicates. Check if a concept already exists before adding it.