backpack-ontology 0.2.18 → 0.2.25

package/dist/core/backpack.d.ts

@@ -1,4 +1,4 @@
-import type { StorageBackend, Node, Edge, LearningGraphMetadata, LearningGraphSummary, NodeSummary, NodeTypeInfo, EdgeTypeInfo, ListNodesResult, GetNodeResult, NeighborResult } from "./types.js";
+import type { StorageBackend, Node, Edge, LearningGraphMetadata, LearningGraphSummary, NodeSummary, NodeTypeInfo, EdgeTypeInfo, ListNodesResult, GetNodeResult, NeighborResult, GraphStats, GraphAudit } from "./types.js";
 /**
  * The main Backpack API. Composes a StorageBackend with the Graph engine.
  *
@@ -30,6 +30,7 @@ export declare class Backpack {
         edgeTypes: EdgeTypeInfo[];
         nodeCount: number;
         edgeCount: number;
+        stats: GraphStats;
     }>;
     listNodes(ontologyName: string, type?: string, limit?: number, offset?: number): Promise<ListNodesResult>;
     getNodeTypes(ontologyName: string): Promise<NodeTypeInfo[]>;
@@ -46,9 +47,58 @@ export declare class Backpack {
     importNodes(ontologyName: string, nodes: Array<{
         type: string;
         properties: Record<string, unknown>;
+    }>, edges?: Array<{
+        type: string;
+        source: number | string;
+        target: number | string;
+        properties?: Record<string, unknown>;
+    }>): Promise<{
+        count: number;
+        ids: string[];
+        edgeCount: number;
+        edgeIds: string[];
+    }>;
+    auditOntology(name: string): Promise<GraphAudit>;
+    connectEdges(ontologyName: string, edges: Array<{
+        type: string;
+        sourceId: string;
+        targetId: string;
+        properties?: Record<string, unknown>;
     }>): Promise<{
         count: number;
         ids: string[];
     }>;
+    listBranches(name: string): Promise<any>;
+    createBranch(name: string, branchName: string, fromBranch?: string): Promise<void>;
+    switchBranch(name: string, branchName: string): Promise<void>;
+    deleteBranch(name: string, branchName: string): Promise<void>;
+    createSnapshot(name: string, label?: string): Promise<number>;
+    listSnapshots(name: string): Promise<any>;
+    rollback(name: string, version: number): Promise<void>;
+    saveSnippet(name: string, snippet: {
+        label: string;
+        description?: string;
+        nodeIds: string[];
+        edgeIds: string[];
+    }): Promise<string>;
+    listSnippets(name: string): Promise<any>;
+    loadSnippet(name: string, snippetId: string): Promise<any>;
+    deleteSnippet(name: string, snippetId: string): Promise<void>;
+    diffWithSnapshot(name: string, version: number): Promise<{
+        nodesAdded: {
+            id: string;
+            type: string;
+        }[];
+        nodesRemoved: any;
+        edgesAdded: {
+            id: string;
+            type: string;
+        }[];
+        edgesRemoved: any;
+        currentNodeCount: number;
+        snapshotNodeCount: any;
+        currentEdgeCount: number;
+        snapshotEdgeCount: any;
+    }>;
 }
 //# sourceMappingURL=backpack.d.ts.map

package/dist/core/backpack.d.ts.map

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package/dist/core/backpack.js

@@ -74,6 +74,7 @@ export class Backpack {
             edgeTypes: graph.getEdgeTypes(),
             nodeCount: graph.data.nodes.length,
             edgeCount: graph.data.edges.length,
+            stats: graph.getStats(),
         };
     }
     // --- Node operations ---
@@ -128,15 +129,107 @@ export class Backpack {
         return graph.getNeighbors(nodeId, edgeType, direction, depth);
     }
     // --- Bulk operations ---
-    async importNodes(ontologyName, nodes) {
+    async importNodes(ontologyName, nodes, edges) {
         const graph = await this.getGraph(ontologyName);
-        const ids = [];
-        for (const { type, properties } of nodes) {
-            const node = graph.addNode(type, properties);
-            ids.push(node.id);
-        }
+        const result = graph.importNodesAndEdges(nodes, edges);
+        await this.persist(ontologyName);
+        return {
+            count: result.nodeIds.length,
+            ids: result.nodeIds,
+            edgeCount: result.edgeIds.length,
+            edgeIds: result.edgeIds,
+        };
+    }
+    async auditOntology(name) {
+        const graph = await this.getGraph(name);
+        return graph.audit();
+    }
+    async connectEdges(ontologyName, edges) {
+        const graph = await this.getGraph(ontologyName);
+        const ids = graph.importEdges(edges);
         await this.persist(ontologyName);
         return { count: ids.length, ids };
     }
+    // --- Branch operations ---
+    async listBranches(name) {
+        if (!("listBranches" in this.storage))
+            return [];
+        return this.storage.listBranches(name);
+    }
+    async createBranch(name, branchName, fromBranch) {
+        if (!("createBranch" in this.storage))
+            throw new Error("Branches not supported by storage backend");
+        await this.storage.createBranch(name, branchName, fromBranch);
+    }
+    async switchBranch(name, branchName) {
+        if (!("switchBranch" in this.storage))
+            throw new Error("Branches not supported by storage backend");
+        // Invalidate cached graph since we're switching branches
+        this.graphs.delete(name);
+        await this.storage.switchBranch(name, branchName);
+    }
+    async deleteBranch(name, branchName) {
+        if (!("deleteBranch" in this.storage))
+            throw new Error("Branches not supported by storage backend");
+        await this.storage.deleteBranch(name, branchName);
+    }
+    // --- Snapshot operations ---
+    async createSnapshot(name, label) {
+        if (!("createSnapshot" in this.storage))
+            throw new Error("Snapshots not supported by storage backend");
+        return this.storage.createSnapshot(name, label);
+    }
+    async listSnapshots(name) {
+        if (!("listSnapshots" in this.storage))
+            return [];
+        return this.storage.listSnapshots(name);
+    }
+    async rollback(name, version) {
+        if (!("rollback" in this.storage))
+            throw new Error("Snapshots not supported by storage backend");
+        this.graphs.delete(name);
+        await this.storage.rollback(name, version);
+    }
+    // --- Snippet operations ---
+    async saveSnippet(name, snippet) {
+        if (!("saveSnippet" in this.storage))
+            throw new Error("Snippets not supported by storage backend");
+        return this.storage.saveSnippet(name, snippet);
+    }
+    async listSnippets(name) {
+        if (!("listSnippets" in this.storage))
+            return [];
+        return this.storage.listSnippets(name);
+    }
+    async loadSnippet(name, snippetId) {
+        if (!("loadSnippet" in this.storage))
+            throw new Error("Snippets not supported by storage backend");
+        return this.storage.loadSnippet(name, snippetId);
+    }
+    async deleteSnippet(name, snippetId) {
+        if (!("deleteSnippet" in this.storage))
+            throw new Error("Snippets not supported by storage backend");
+        await this.storage.deleteSnippet(name, snippetId);
+    }
+    async diffWithSnapshot(name, version) {
+        if (!("loadSnapshot" in this.storage))
+            throw new Error("Snapshots not supported by storage backend");
+        const current = await this.storage.loadOntology(name);
+        const snapshot = await this.storage.loadSnapshot(name, version);
+        const currentNodeIds = new Set(current.nodes.map((n) => n.id));
+        const snapshotNodeIds = new Set(snapshot.nodes.map((n) => n.id));
+        const currentEdgeIds = new Set(current.edges.map((e) => e.id));
+        const snapshotEdgeIds = new Set(snapshot.edges.map((e) => e.id));
+        return {
+            nodesAdded: current.nodes.filter((n) => !snapshotNodeIds.has(n.id)).map((n) => ({ id: n.id, type: n.type })),
+            nodesRemoved: snapshot.nodes.filter((n) => !currentNodeIds.has(n.id)).map((n) => ({ id: n.id, type: n.type })),
+            edgesAdded: current.edges.filter((e) => !snapshotEdgeIds.has(e.id)).map((e) => ({ id: e.id, type: e.type })),
+            edgesRemoved: snapshot.edges.filter((e) => !currentEdgeIds.has(e.id)).map((e) => ({ id: e.id, type: e.type })),
+            currentNodeCount: current.nodes.length,
+            snapshotNodeCount: snapshot.nodes.length,
+            currentEdgeCount: current.edges.length,
+            snapshotEdgeCount: snapshot.edges.length,
+        };
+    }
 }
 //# sourceMappingURL=backpack.js.map

package/dist/core/backpack.js.map

@@ -1 +1 @@
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package/dist/core/graph.d.ts

@@ -1,4 +1,4 @@
-import type { Node, Edge, LearningGraphData, NodeSummary, NodeTypeInfo, EdgeTypeInfo, ListNodesResult, GetNodeResult, NeighborResult } from "./types.js";
+import type { Node, Edge, LearningGraphData, NodeSummary, NodeTypeInfo, EdgeTypeInfo, ListNodesResult, GetNodeResult, NeighborResult, GraphStats, GraphAudit } from "./types.js";
 /**
  * In-memory graph operations on an LearningGraphData object.
  * Pure logic — no I/O, no MCP, fully testable.
@@ -18,6 +18,23 @@ export declare class Graph {
     /** Convert a full Edge to an EdgeSummary. */
     private summarizeEdge;
     addNode(type: string, properties: Record<string, unknown>): Node;
+    /**
+     * Bulk-import nodes and optionally edges in a single atomic operation.
+     * Edges reference new nodes by array index (number) or existing nodes by ID (string).
+     * Pre-validates all edge references before creating anything (all-or-nothing).
+     */
+    importNodesAndEdges(nodes: Array<{
+        type: string;
+        properties: Record<string, unknown>;
+    }>, edges?: Array<{
+        type: string;
+        source: number | string;
+        target: number | string;
+        properties?: Record<string, unknown>;
+    }>): {
+        nodeIds: string[];
+        edgeIds: string[];
+    };
     getNode(id: string): Node | undefined;
     updateNode(id: string, properties: Record<string, unknown>): Node;
     /** Remove a node and all edges connected to it. Returns the count of removed edges. */
@@ -30,6 +47,17 @@ export declare class Graph {
     getNodeTypes(): NodeTypeInfo[];
     /** Get distinct edge types with counts, derived from actual data. */
     getEdgeTypes(): EdgeTypeInfo[];
+    /** Compute graph statistics for diagnostics and improvement planning. */
+    getStats(): GraphStats;
+    /** Audit the graph and produce a structured improvement report. */
+    audit(): GraphAudit;
+    /** Bulk-import edges only (all nodes must already exist). Single atomic operation. */
+    importEdges(edges: Array<{
+        type: string;
+        sourceId: string;
+        targetId: string;
+        properties?: Record<string, unknown>;
+    }>): string[];
     addEdge(type: string, sourceId: string, targetId: string, properties?: Record<string, unknown>): Edge;
     getEdge(id: string): Edge | undefined;
     removeEdge(id: string): void;

package/dist/core/graph.d.ts.map

@@ -1 +1 @@
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package/dist/core/graph.js

@@ -55,6 +55,52 @@ export class Graph {
         this.data.metadata.updatedAt = now;
         return node;
     }
+    /**
+     * Bulk-import nodes and optionally edges in a single atomic operation.
+     * Edges reference new nodes by array index (number) or existing nodes by ID (string).
+     * Pre-validates all edge references before creating anything (all-or-nothing).
+     */
+    importNodesAndEdges(nodes, edges) {
+        // Pre-validate edge references before any mutations
+        if (edges) {
+            for (let i = 0; i < edges.length; i++) {
+                const { source, target } = edges[i];
+                if (typeof source === "number") {
+                    if (source < 0 || source >= nodes.length)
+                        throw new Error(`Edge at index ${i}: source index ${source} is out of bounds (${nodes.length} nodes provided)`);
+                }
+                else {
+                    if (!this.getNode(source))
+                        throw new Error(`Edge at index ${i}: source node not found: ${source}`);
+                }
+                if (typeof target === "number") {
+                    if (target < 0 || target >= nodes.length)
+                        throw new Error(`Edge at index ${i}: target index ${target} is out of bounds (${nodes.length} nodes provided)`);
+                }
+                else {
+                    if (!this.getNode(target))
+                        throw new Error(`Edge at index ${i}: target node not found: ${target}`);
+                }
+            }
+        }
+        // Phase 1: create all nodes
+        const nodeIds = [];
+        for (const { type, properties } of nodes) {
+            const node = this.addNode(type, properties);
+            nodeIds.push(node.id);
+        }
+        // Phase 2: resolve references and create edges
+        const edgeIds = [];
+        if (edges) {
+            for (const { type, source, target, properties } of edges) {
+                const sourceId = typeof source === "number" ? nodeIds[source] : source;
+                const targetId = typeof target === "number" ? nodeIds[target] : target;
+                const edge = this.addEdge(type, sourceId, targetId, properties ?? {});
+                edgeIds.push(edge.id);
+            }
+        }
+        return { nodeIds, edgeIds };
+    }
     getNode(id) {
         return this.data.nodes.find((n) => n.id === id);
     }
@@ -138,6 +184,165 @@ export class Graph {
             .map(([type, count]) => ({ type, count }))
             .sort((a, b) => b.count - a.count);
     }
+    /** Compute graph statistics for diagnostics and improvement planning. */
+    getStats() {
+        const connectionCounts = new Map();
+        const connectedNodes = new Set();
+        const typePairs = new Map();
+        for (const edge of this.data.edges) {
+            connectionCounts.set(edge.sourceId, (connectionCounts.get(edge.sourceId) ?? 0) + 1);
+            connectionCounts.set(edge.targetId, (connectionCounts.get(edge.targetId) ?? 0) + 1);
+            connectedNodes.add(edge.sourceId);
+            connectedNodes.add(edge.targetId);
+            const sType = this.getNode(edge.sourceId)?.type ?? "?";
+            const tType = this.getNode(edge.targetId)?.type ?? "?";
+            const pairKey = [sType, tType].sort().join("<->");
+            typePairs.set(pairKey, (typePairs.get(pairKey) ?? 0) + 1);
+        }
+        const toDegree = (n) => ({
+            id: n.id,
+            label: this.nodeLabel(n),
+            type: n.type,
+            connections: connectionCounts.get(n.id) ?? 0,
+        });
+        const orphans = this.data.nodes
+            .filter((n) => !connectedNodes.has(n.id))
+            .map(toDegree);
+        const sorted = this.data.nodes
+            .map(toDegree)
+            .sort((a, b) => b.connections - a.connections);
+        const totalPossible = this.data.nodes.length * (this.data.nodes.length - 1) / 2;
+        const density = totalPossible > 0 ? this.data.edges.length / totalPossible : 0;
+        const totalConnections = [...connectionCounts.values()].reduce((a, b) => a + b, 0);
+        return {
+            orphanCount: orphans.length,
+            orphans: orphans.slice(0, 20),
+            mostConnected: sorted.slice(0, 10),
+            leastConnected: sorted.filter((n) => n.connections > 0).reverse().slice(0, 10),
+            avgConnections: this.data.nodes.length > 0 ? totalConnections / this.data.nodes.length : 0,
+            density: Math.round(density * 1000) / 1000,
+            typeConnections: [...typePairs.entries()]
+                .map(([types, count]) => ({ types, count }))
+                .sort((a, b) => b.count - a.count),
+        };
+    }
+    /** Audit the graph and produce a structured improvement report. */
+    audit() {
+        const stats = this.getStats();
+        const suggestions = [];
+        // Per-type connection stats
+        const typeNodes = new Map();
+        const typeConnectionSum = new Map();
+        for (const n of this.data.nodes) {
+            const list = typeNodes.get(n.type) ?? [];
+            list.push(n.id);
+            typeNodes.set(n.type, list);
+        }
+        const connectionCounts = new Map();
+        for (const e of this.data.edges) {
+            connectionCounts.set(e.sourceId, (connectionCounts.get(e.sourceId) ?? 0) + 1);
+            connectionCounts.set(e.targetId, (connectionCounts.get(e.targetId) ?? 0) + 1);
+        }
+        for (const [type, ids] of typeNodes) {
+            const sum = ids.reduce((acc, id) => acc + (connectionCounts.get(id) ?? 0), 0);
+            typeConnectionSum.set(type, sum / ids.length);
+        }
+        // Weak nodes: connected but well below their type average
+        const weakNodes = [];
+        for (const n of this.data.nodes) {
+            const conns = connectionCounts.get(n.id) ?? 0;
+            const typeAvg = typeConnectionSum.get(n.type) ?? 0;
+            if (conns > 0 && conns < typeAvg * 0.5 && typeAvg >= 2) {
+                weakNodes.push({ id: n.id, label: this.nodeLabel(n), type: n.type, connections: conns });
+            }
+        }
+        weakNodes.sort((a, b) => a.connections - b.connections);
+        // Sparse types: types with low intra-type edge density
+        const typeIntraEdges = new Map();
+        for (const e of this.data.edges) {
+            const sType = this.getNode(e.sourceId)?.type;
+            const tType = this.getNode(e.targetId)?.type;
+            if (sType && sType === tType) {
+                typeIntraEdges.set(sType, (typeIntraEdges.get(sType) ?? 0) + 1);
+            }
+        }
+        const sparseTypes = [];
+        for (const [type, ids] of typeNodes) {
+            if (ids.length < 2)
+                continue;
+            const intra = typeIntraEdges.get(type) ?? 0;
+            const avg = typeConnectionSum.get(type) ?? 0;
+            if (avg < 1.5) {
+                sparseTypes.push({ type, nodes: ids.length, intraEdges: intra, avgConnections: Math.round(avg * 10) / 10 });
+            }
+        }
+        sparseTypes.sort((a, b) => a.avgConnections - b.avgConnections);
+        // Disconnected type pairs: types with nodes but no edges between them
+        const typePairsWithEdges = new Set();
+        for (const e of this.data.edges) {
+            const sType = this.getNode(e.sourceId)?.type;
+            const tType = this.getNode(e.targetId)?.type;
+            if (sType && tType && sType !== tType) {
+                typePairsWithEdges.add([sType, tType].sort().join("<->"));
+            }
+        }
+        const types = [...typeNodes.keys()];
+        const disconnectedTypePairs = [];
+        for (let i = 0; i < types.length; i++) {
+            for (let j = i + 1; j < types.length; j++) {
+                const key = [types[i], types[j]].sort().join("<->");
+                if (!typePairsWithEdges.has(key)) {
+                    disconnectedTypePairs.push({
+                        typeA: types[i],
+                        typeB: types[j],
+                        nodesA: typeNodes.get(types[i]).length,
+                        nodesB: typeNodes.get(types[j]).length,
+                    });
+                }
+            }
+        }
+        // Generate suggestions
+        if (stats.orphanCount > 0) {
+            const orphanTypes = [...new Set(stats.orphans.map((o) => o.type))];
+            suggestions.push(`${stats.orphanCount} orphan node(s) have no connections — types: ${orphanTypes.join(", ")}. Use backpack_connect to add edges.`);
+        }
+        if (weakNodes.length > 0) {
+            suggestions.push(`${weakNodes.length} node(s) have far fewer connections than their type average. Consider adding edges to: ${weakNodes.slice(0, 5).map((n) => n.label).join(", ")}.`);
+        }
+        for (const st of sparseTypes.slice(0, 3)) {
+            suggestions.push(`${st.type} type has ${st.nodes} nodes but avg ${st.avgConnections} connections — consider adding more relationships.`);
+        }
+        for (const dp of disconnectedTypePairs.slice(0, 3)) {
+            suggestions.push(`${dp.typeA} and ${dp.typeB} have no edges between them (${dp.nodesA} and ${dp.nodesB} nodes). Consider if they should be connected.`);
+        }
+        if (suggestions.length === 0) {
+            suggestions.push("Graph looks well-connected. No obvious improvements found.");
+        }
+        return {
+            orphans: stats.orphans,
+            weakNodes: weakNodes.slice(0, 20),
+            sparseTypes,
+            disconnectedTypePairs,
+            suggestions,
+        };
+    }
+    /** Bulk-import edges only (all nodes must already exist). Single atomic operation. */
+    importEdges(edges) {
+        // Pre-validate all node references
+        for (let i = 0; i < edges.length; i++) {
+            const { sourceId, targetId } = edges[i];
+            if (!this.getNode(sourceId))
+                throw new Error(`Edge at index ${i}: source node not found: ${sourceId}`);
+            if (!this.getNode(targetId))
+                throw new Error(`Edge at index ${i}: target node not found: ${targetId}`);
+        }
+        const ids = [];
+        for (const { type, sourceId, targetId, properties } of edges) {
+            const edge = this.addEdge(type, sourceId, targetId, properties ?? {});
+            ids.push(edge.id);
+        }
+        return ids;
+    }
     // --- Edge operations ---
     addEdge(type, sourceId, targetId, properties = {}) {
         // Validate that both nodes exist

package/dist/core/graph.js.map

@@ -1 +1 @@
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package/dist/core/telemetry.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"telemetry.d.ts","sourceRoot":"","sources":["../../src/core/telemetry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAOH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAyJ9C,yDAAyD;AACzD,wBAAsB,aAAa,CAAC,QAAQ,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC,CA6BtE;AAED,mEAAmE;AACnE,wBAAgB,UAAU,CACxB,KAAK,EAAE,MAAM,EACb,UAAU,GAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAM,GACvC,IAAI,CAWN;AAED,iFAAiF;AACjF,wBAAsB,QAAQ,IAAI,OAAO,CAAC,IAAI,CAAC,CAe9C"}
+{"version":3,"file":"telemetry.d.ts","sourceRoot":"","sources":["../../src/core/telemetry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAOH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAmK9C,yDAAyD;AACzD,wBAAsB,aAAa,CAAC,QAAQ,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC,CA6BtE;AAED,mEAAmE;AACnE,wBAAgB,UAAU,CACxB,KAAK,EAAE,MAAM,EACb,UAAU,GAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAM,GACvC,IAAI,CAWN;AAED,iFAAiF;AACjF,wBAAsB,QAAQ,IAAI,OAAO,CAAC,IAAI,CAAC,CAe9C"}

package/dist/core/telemetry.js

@@ -110,6 +110,8 @@ async function buildSnapshot(event) {
     let ontologyCount = 0;
     let totalNodes = 0;
     let totalEdges = 0;
+    let branchCount = 0;
+    let snapshotCount = 0;
     if (backpackRef) {
         try {
             const ontologies = await backpackRef.listOntologies();
@@ -117,6 +119,13 @@ async function buildSnapshot(event) {
             for (const o of ontologies) {
                 totalNodes += o.nodeCount;
                 totalEdges += o.edgeCount;
+                try {
+                    const branches = await backpackRef.listBranches(o.name);
+                    branchCount += branches.length;
+                    const snapshots = await backpackRef.listSnapshots(o.name);
+                    snapshotCount += snapshots.length;
+                }
+                catch { /* storage may not support branches */ }
             }
         }
         catch {
@@ -135,6 +144,8 @@ async function buildSnapshot(event) {
             ontologyCount,
             totalNodes,
             totalEdges,
+            branchCount,
+            snapshotCount,
             nodeVersion: process.version,
             os: os.platform(),
             arch: os.arch(),