autoremediator 0.21.2 → 0.22.0

package/dist/runs/run-store.js

@@ -0,0 +1,161 @@
+import { existsSync, mkdirSync, readdirSync, readFileSync, renameSync, rmSync, writeFileSync, } from "node:fs";
+import { join } from "node:path";
+import { isAttemptId, isRunId, newRunId } from "./ids.js";
+import { Ledger } from "./ledger.js";
+/** Run records live in `<project>/.autoremediator/runs/<runId>/`. */
+export class RunStore {
+    cwd;
+    root;
+    constructor(cwd) {
+        this.cwd = cwd;
+        this.root = join(cwd, ".autoremediator", "runs");
+    }
+    /** Directory of a run; the id is validated, so it can never point outside `root`. */
+    runDir(runId) {
+        if (!isRunId(runId))
+            throw new Error(`Invalid run id: ${JSON.stringify(runId)}`);
+        return join(this.root, runId);
+    }
+    create(init) {
+        const runId = newRunId();
+        mkdirSync(this.runDir(runId), { recursive: true });
+        const now = new Date().toISOString();
+        const record = {
+            schemaVersion: 1,
+            runId,
+            status: init.status ?? "planned",
+            cwd: init.cwd,
+            cveIds: init.cveIds,
+            ...(init.source ? { source: init.source } : {}),
+            createdAt: now,
+            updatedAt: now,
+            ...(init.planId ? { planId: init.planId } : {}),
+            base: init.base,
+        };
+        this.writeJson(runId, "run.json", record);
+        return record;
+    }
+    exists(runId) {
+        return existsSync(join(this.runDir(runId), "run.json"));
+    }
+    load(runId) {
+        if (!this.exists(runId))
+            throw new Error(`Run not found: ${runId}`);
+        return JSON.parse(readFileSync(join(this.runDir(runId), "run.json"), "utf8"));
+    }
+    update(runId, patch) {
+        const next = {
+            ...this.load(runId),
+            ...patch,
+            updatedAt: new Date().toISOString(),
+        };
+        this.writeJson(runId, "run.json", next);
+        return next;
+    }
+    /** Newest first. Unreadable run directories are skipped rather than failing the listing. */
+    list() {
+        if (!existsSync(this.root))
+            return [];
+        const records = [];
+        for (const name of readdirSync(this.root)) {
+            if (!isRunId(name))
+                continue;
+            try {
+                records.push(this.load(name));
+            }
+            catch {
+                // A half-written or damaged run is not worth hiding the others for.
+            }
+        }
+        return records.toSorted((a, b) => b.createdAt.localeCompare(a.createdAt));
+    }
+    ledger(runId) {
+        return new Ledger(join(this.runDir(runId), "steps.jsonl"));
+    }
+    hasFile(runId, name) {
+        return existsSync(join(this.runDir(runId), name));
+    }
+    /** The run's plan, when it has one. */
+    readPlan(runId) {
+        const file = join(this.runDir(runId), "plan.json");
+        return existsSync(file)
+            ? JSON.parse(readFileSync(file, "utf8"))
+            : undefined;
+    }
+    /** The preview report a plan was made from, when the run has one. */
+    readReport(runId) {
+        const file = join(this.runDir(runId), "report.json");
+        return existsSync(file)
+            ? JSON.parse(readFileSync(file, "utf8"))
+            : undefined;
+    }
+    /** Directory of one attempt; both ids are validated. */
+    attemptDir(runId, attemptId) {
+        if (!isAttemptId(attemptId))
+            throw new Error(`Invalid attempt id: ${JSON.stringify(attemptId)}`);
+        return join(this.runDir(runId), "attempts", attemptId);
+    }
+    /** An attempt's record and the files that explain it (`diff.patch`, `transcript.jsonl`, ...). */
+    writeAttempt(runId, record, files = {}) {
+        const dir = this.attemptDir(runId, record.attemptId);
+        mkdirSync(dir, { recursive: true });
+        for (const [name, content] of Object.entries(files))
+            writeFileSync(join(dir, name), content, "utf8");
+        this.writeJson(runId, `attempts/${record.attemptId}/attempt.json`, record);
+    }
+    listAttempts(runId) {
+        const root = join(this.runDir(runId), "attempts");
+        if (!existsSync(root))
+            return [];
+        const records = [];
+        for (const name of readdirSync(root)) {
+            if (!isAttemptId(name))
+                continue;
+            try {
+                records.push(JSON.parse(readFileSync(join(root, name, "attempt.json"), "utf8")));
+            }
+            catch {
+                // Skip a damaged attempt rather than hiding the others.
+            }
+        }
+        return records.toSorted((a, b) => a.startedAt.localeCompare(b.startedAt));
+    }
+    /** Write atomically (temp file, then rename), so readers never see a half-written file. */
+    writeJson(runId, name, value) {
+        const target = join(this.runDir(runId), name);
+        const temp = `${target}.tmp-${process.pid}`;
+        writeFileSync(temp, `${JSON.stringify(value, null, 2)}\n`, "utf8");
+        renameSync(temp, target);
+    }
+    /**
+     * Take the run's apply lock. The lock records the owning process; one whose process has died is
+     * taken over, so a crashed apply can be resumed.
+     */
+    acquireApplyLock(runId) {
+        const lockFile = join(this.runDir(runId), "apply.lock");
+        const claim = () => writeFileSync(lockFile, String(process.pid), { flag: "wx" });
+        try {
+            claim();
+        }
+        catch {
+            const owner = Number.parseInt(readFileSync(lockFile, "utf8"), 10);
+            if (Number.isFinite(owner) && isAlive(owner)) {
+                throw new Error(`Run ${runId} is already being applied (process ${owner}).`);
+            }
+            rmSync(lockFile, { force: true });
+            claim();
+        }
+        return () => rmSync(lockFile, { force: true });
+    }
+}
+function isAlive(pid) {
+    try {
+        process.kill(pid, 0);
+        return true;
+    }
+    catch (error) {
+        // EPERM means the process exists but belongs to someone else.
+        return error.code === "EPERM";
+    }
+}
+//# sourceMappingURL=run-store.js.map

package/dist/runs/run-store.js.map

@@ -0,0 +1 @@
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package/dist/runs/snapshot-store.d.ts

@@ -0,0 +1,13 @@
+import type { ProjectSnapshot } from "../platform/rollback.js";
+/**
+ * Persist a rollback snapshot under `dir` (`snapshot.json` plus content-addressed `blobs/`), so a
+ * run can be undone after the process that made it has exited.
+ */
+export declare function saveSnapshot(dir: string, snapshot: ProjectSnapshot): void;
+export declare function loadSnapshot(dir: string): ProjectSnapshot;
+/**
+ * Record more files in an existing snapshot (their content before a later change), keeping what
+ * is already there: the first recorded content of a file is the one that matters for a rollback.
+ */
+export declare function addToSnapshot(dir: string, files: ReadonlyMap<string, string | null>): void;
+//# sourceMappingURL=snapshot-store.d.ts.map

package/dist/runs/snapshot-store.d.ts.map

@@ -0,0 +1 @@
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package/dist/runs/snapshot-store.js

@@ -0,0 +1,78 @@
+import { mkdirSync, readFileSync, writeFileSync } from "node:fs";
+import { join } from "node:path";
+import { sha256 } from "./hash.js";
+/** Content is kept as latin1 in memory (byte-exact for any file); store the bytes themselves. */
+const toBytes = (content) => Buffer.from(content, "latin1");
+/**
+ * Persist a rollback snapshot under `dir` (`snapshot.json` plus content-addressed `blobs/`), so a
+ * run can be undone after the process that made it has exited.
+ */
+export function saveSnapshot(dir, snapshot) {
+    const blobs = join(dir, "blobs");
+    mkdirSync(blobs, { recursive: true });
+    const files = {};
+    for (const [path, content] of snapshot.fileSnapshots) {
+        if (content === null) {
+            files[path] = null;
+            continue;
+        }
+        const bytes = toBytes(content);
+        const hash = sha256(bytes);
+        writeFileSync(join(blobs, hash), bytes);
+        files[path] = hash;
+    }
+    const manifest = {
+        version: 1,
+        cwd: snapshot.cwd,
+        isGit: snapshot.isGit,
+        ...(snapshot.gitRoot ? { gitRoot: snapshot.gitRoot } : {}),
+        ...(snapshot.gitStatusBefore ? { gitStatusBefore: snapshot.gitStatusBefore } : {}),
+        files,
+    };
+    writeFileSync(join(dir, "snapshot.json"), `${JSON.stringify(manifest, null, 2)}\n`, "utf8");
+}
+export function loadSnapshot(dir) {
+    const manifest = JSON.parse(readFileSync(join(dir, "snapshot.json"), "utf8"));
+    const fileSnapshots = new Map();
+    for (const [path, hash] of Object.entries(manifest.files)) {
+        if (hash === null) {
+            fileSnapshots.set(path, null);
+            continue;
+        }
+        const bytes = readFileSync(join(dir, "blobs", hash));
+        if (sha256(bytes) !== hash)
+            throw new Error(`Snapshot blob for "${path}" is corrupt.`);
+        fileSnapshots.set(path, bytes.toString("latin1"));
+    }
+    return {
+        cwd: manifest.cwd,
+        isGit: manifest.isGit,
+        ...(manifest.gitRoot ? { gitRoot: manifest.gitRoot } : {}),
+        ...(manifest.gitStatusBefore ? { gitStatusBefore: manifest.gitStatusBefore } : {}),
+        fileSnapshots,
+    };
+}
+/**
+ * Record more files in an existing snapshot (their content before a later change), keeping what
+ * is already there: the first recorded content of a file is the one that matters for a rollback.
+ */
+export function addToSnapshot(dir, files) {
+    const manifestPath = join(dir, "snapshot.json");
+    const manifest = JSON.parse(readFileSync(manifestPath, "utf8"));
+    const blobs = join(dir, "blobs");
+    mkdirSync(blobs, { recursive: true });
+    for (const [path, content] of files) {
+        if (path in manifest.files)
+            continue;
+        if (content === null) {
+            manifest.files[path] = null;
+            continue;
+        }
+        const bytes = toBytes(content);
+        const hash = sha256(bytes);
+        writeFileSync(join(blobs, hash), bytes);
+        manifest.files[path] = hash;
+    }
+    writeFileSync(manifestPath, `${JSON.stringify(manifest, null, 2)}\n`, "utf8");
+}
+//# sourceMappingURL=snapshot-store.js.map

package/dist/runs/snapshot-store.js.map

@@ -0,0 +1 @@
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package/dist/runs/worktree.d.ts

@@ -0,0 +1,40 @@
+export interface Worktree {
+    /** Checkout directory, laid out like the project (same relative paths). */
+    path: string;
+    /**
+     * The commit the checkout started from. When the project had uncommitted changes, that is a
+     * commit made in the checkout holding them, so a diff against it is exactly what an attempt did
+     * and applies to the project as it is now.
+     */
+    base: string;
+    /** Removes the checkout and its git registration; safe to call twice. */
+    remove: () => Promise<void>;
+}
+/** Where worktrees live: outside the project, so tests, tsc and workspace globs never see them. */
+export declare function worktreeRoot(cwd: string, env?: NodeJS.ProcessEnv): string;
+/**
+ * An isolated checkout of the project at HEAD, carrying over uncommitted changes (tracked edits and
+ * untracked files that are not ignored), so attempts start from what the project looks like now.
+ * `cwd` may be a subdirectory of the repository; the returned path then points at the same
+ * subdirectory inside the checkout.
+ */
+export declare function createWorktree(cwd: string, name: string, env?: NodeJS.ProcessEnv): Promise<Worktree>;
+/**
+ * The change made in a worktree since its base commit, as a patch that `git apply` accepts (new
+ * files included). Empty when nothing changed.
+ */
+export declare function worktreeDiff(worktree: string): Promise<string>;
+/**
+ * Remove a checkout made by `createWorktree`, given only its path (an attempt can outlive the
+ * process that created it). Safe to call for a checkout that is already gone.
+ */
+export declare function discardWorktree(projectCwd: string, checkoutPath: string): Promise<void>;
+/**
+ * An isolated checkout of the repository at a given commit or ref, exactly as committed: nothing from
+ * the project's working tree is carried over. `cwd` may be a subdirectory of the repository; the
+ * returned path then points at the same subdirectory inside the checkout. `remove` is idempotent.
+ */
+export declare function createRefWorktree(cwd: string, name: string, ref: string, env?: NodeJS.ProcessEnv): Promise<Worktree & {
+    root: string;
+}>;
+//# sourceMappingURL=worktree.d.ts.map

package/dist/runs/worktree.d.ts.map

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package/dist/runs/worktree.js

@@ -0,0 +1,144 @@
+import { cpSync, existsSync, mkdirSync, readdirSync, realpathSync, rmSync, rmdirSync, } from "node:fs";
+import { homedir } from "node:os";
+import { dirname, join, relative } from "node:path";
+import { safeExeca } from "../platform/safe-exec.js";
+import { sha256 } from "./hash.js";
+async function git(cwd, args) {
+    return (await safeExeca("git", args, { cwd, stdio: "pipe" })).stdout;
+}
+/** A patch must keep its final newline, which `execa` strips by default. */
+async function gitPatch(cwd, args) {
+    return (await safeExeca("git", args, { cwd, stdio: "pipe", stripFinalNewline: false })).stdout;
+}
+/** Where worktrees live: outside the project, so tests, tsc and workspace globs never see them. */
+export function worktreeRoot(cwd, env = process.env) {
+    const cache = env["XDG_CACHE_HOME"] ?? join(homedir(), ".cache");
+    return join(cache, "autoremediator", "worktrees", sha256(cwd).slice(0, 16));
+}
+/**
+ * An isolated checkout of the project at HEAD, carrying over uncommitted changes (tracked edits and
+ * untracked files that are not ignored), so attempts start from what the project looks like now.
+ * `cwd` may be a subdirectory of the repository; the returned path then points at the same
+ * subdirectory inside the checkout.
+ */
+export async function createWorktree(cwd, name, env = process.env) {
+    const root = (await git(cwd, ["rev-parse", "--show-toplevel"]).catch(() => "")).trim();
+    if (!root)
+        throw new Error("Attempts need a git repository: this directory is not one.");
+    const head = (await git(root, ["rev-parse", "HEAD"]).catch(() => "")).trim();
+    if (!head)
+        throw new Error("Attempts need at least one commit in the repository.");
+    const repoWorktree = join(worktreeRoot(root, env), name);
+    mkdirSync(dirname(repoWorktree), { recursive: true });
+    await git(root, ["worktree", "add", "--detach", repoWorktree, head]);
+    try {
+        // Uncommitted tracked changes.
+        const tracked = await gitPatch(root, ["diff", "HEAD", "--binary"]);
+        if (tracked.trim().length > 0) {
+            await safeExeca("git", ["apply", "--whitespace=nowarn", "-"], {
+                cwd: repoWorktree,
+                input: tracked,
+                stdio: "pipe",
+            });
+        }
+        // Untracked files that are not ignored.
+        const untracked = (await git(root, ["ls-files", "--others", "--exclude-standard", "-z"]))
+            .split("\0")
+            .filter(Boolean);
+        for (const file of untracked) {
+            const target = join(repoWorktree, file);
+            mkdirSync(dirname(target), { recursive: true });
+            cpSync(join(root, file), target);
+        }
+        // Record the carried-over state as the starting point (the commit lives only in the checkout's
+        // detached HEAD and is never referenced by a branch).
+        if ((await git(repoWorktree, ["status", "--porcelain"])).trim().length > 0) {
+            await git(repoWorktree, ["add", "--all"]);
+            await safeExeca("git", [
+                "-c",
+                "user.name=autoremediator",
+                "-c",
+                "user.email=autoremediator@localhost",
+                "-c",
+                "commit.gpgsign=false",
+                "commit",
+                "--no-verify",
+                "--quiet",
+                "-m",
+                "autoremediator: working tree at attempt start",
+            ], { cwd: repoWorktree, stdio: "pipe" });
+        }
+    }
+    catch (error) {
+        await removeWorktree(root, repoWorktree);
+        throw error;
+    }
+    // `git` reports real paths; compare like with like (macOS /var is a symlink to /private/var).
+    const sub = relative(realpathSync(root), realpathSync(cwd));
+    return {
+        path: sub ? join(repoWorktree, sub) : repoWorktree,
+        base: (await git(repoWorktree, ["rev-parse", "HEAD"])).trim(),
+        remove: () => removeWorktree(root, repoWorktree),
+    };
+}
+async function removeWorktree(root, path) {
+    await git(root, ["worktree", "remove", "--force", path]).catch(() => undefined);
+    if (existsSync(path))
+        rmSync(path, { recursive: true, force: true });
+    await git(root, ["worktree", "prune"]).catch(() => undefined);
+    // Leave no empty per-project directory behind in the cache.
+    const parent = dirname(path);
+    try {
+        if (readdirSync(parent).length === 0)
+            rmdirSync(parent);
+    }
+    catch {
+        // Already gone, or in use by another attempt.
+    }
+}
+/**
+ * The change made in a worktree since its base commit, as a patch that `git apply` accepts (new
+ * files included). Empty when nothing changed.
+ */
+export async function worktreeDiff(worktree) {
+    // Intent-to-add makes new files part of `git diff` without committing anything.
+    await git(worktree, ["add", "--intent-to-add", "--all"]);
+    return gitPatch(worktree, ["diff", "HEAD", "--binary"]);
+}
+/**
+ * Remove a checkout made by `createWorktree`, given only its path (an attempt can outlive the
+ * process that created it). Safe to call for a checkout that is already gone.
+ */
+export async function discardWorktree(projectCwd, checkoutPath) {
+    const root = (await git(projectCwd, ["rev-parse", "--show-toplevel"]).catch(() => "")).trim();
+    if (!root)
+        return;
+    const top = existsSync(checkoutPath)
+        ? (await git(checkoutPath, ["rev-parse", "--show-toplevel"]).catch(() => "")).trim()
+        : "";
+    await removeWorktree(root, top || checkoutPath);
+}
+/**
+ * An isolated checkout of the repository at a given commit or ref, exactly as committed: nothing from
+ * the project's working tree is carried over. `cwd` may be a subdirectory of the repository; the
+ * returned path then points at the same subdirectory inside the checkout. `remove` is idempotent.
+ */
+export async function createRefWorktree(cwd, name, ref, env = process.env) {
+    const root = (await git(cwd, ["rev-parse", "--show-toplevel"]).catch(() => "")).trim();
+    if (!root)
+        throw new Error("A checkout needs a git repository: this directory is not one.");
+    const commit = (await git(root, ["rev-parse", "--verify", "--end-of-options", `${ref}^{commit}`]).catch(() => "")).trim();
+    if (!commit)
+        throw new Error(`Cannot resolve git ref ${JSON.stringify(ref)} to a commit.`);
+    const repoWorktree = join(worktreeRoot(root, env), name);
+    mkdirSync(dirname(repoWorktree), { recursive: true });
+    await git(root, ["worktree", "add", "--detach", repoWorktree, commit]);
+    const sub = relative(realpathSync(root), realpathSync(cwd));
+    return {
+        path: sub ? join(repoWorktree, sub) : repoWorktree,
+        root: repoWorktree,
+        base: commit,
+        remove: () => removeWorktree(root, repoWorktree),
+    };
+}
+//# sourceMappingURL=worktree.js.map

package/dist/runs/worktree.js.map

@@ -0,0 +1 @@
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package/dist/scanner/delta-scan.d.ts

@@ -1,3 +1,12 @@
-import type { DeltaScanOptions, DeltaScanReport } from "../platform/types.js";
+import type { DeltaDependencyChange, DeltaScanOptions, DeltaScanReport } from "../platform/types.js";
+/**
+ * The dependency changes between a git ref and the working tree, from changed `package.json` files
+ * (direct dependencies) and changed lockfiles (everything else the lockfile gained or lost).
+ * Reads files and git only; no network.
+ */
+export declare function collectDependencyChanges(cwd: string, ref: string): Promise<{
+    changedManifests: string[];
+    dependencyChanges: DeltaDependencyChange[];
+}>;
 export declare function scanDelta(options?: DeltaScanOptions): Promise<DeltaScanReport>;
 //# sourceMappingURL=delta-scan.d.ts.map

package/dist/scanner/delta-scan.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"delta-scan.d.ts","sourceRoot":"","sources":["../../src/scanner/delta-scan.ts"],"names":[],"mappings":"AAYA,OAAO,KAAK,EAGV,gBAAgB,EAChB,eAAe,EAChB,MAAM,sBAAsB,CAAC;AAmN9B,wBAAsB,SAAS,CAAC,OAAO,GAAE,gBAAqB,GAAG,OAAO,CAAC,eAAe,CAAC,CAyIxF"}
+{"version":3,"file":"delta-scan.d.ts","sourceRoot":"","sources":["../../src/scanner/delta-scan.ts"],"names":[],"mappings":"AAaA,OAAO,KAAK,EACV,qBAAqB,EAErB,gBAAgB,EAChB,eAAe,EAChB,MAAM,sBAAsB,CAAC;AAmN9B;;;;GAIG;AACH,wBAAsB,wBAAwB,CAC5C,GAAG,EAAE,MAAM,EACX,GAAG,EAAE,MAAM,GACV,OAAO,CAAC;IAAE,gBAAgB,EAAE,MAAM,EAAE,CAAC;IAAC,iBAAiB,EAAE,qBAAqB,EAAE,CAAA;CAAE,CAAC,CAiCrF;AAED,wBAAsB,SAAS,CAAC,OAAO,GAAE,gBAAqB,GAAG,OAAO,CAAC,eAAe,CAAC,CA6GxF"}

package/dist/scanner/delta-scan.js

@@ -7,6 +7,7 @@
 import { existsSync, readFileSync } from "node:fs";
 import { join } from "node:path";
 import semver from "semver";
+import { resolveGitCommit } from "../platform/git-ref.js";
 import { safeExeca } from "../platform/safe-exec.js";
 import { evaluatePackage } from "../remediation/evaluate-package.js";
 import { computeLockfileDiff } from "./lockfile-diff.js";
@@ -168,9 +169,14 @@ async function getFileContentAtRef(cwd, baseRef, relPath) {
         return null;
     }
 }
-export async function scanDelta(options = {}) {
-    const cwd = options.cwd ?? process.cwd();
-    const baseRef = options.baseRef ?? "HEAD";
+/**
+ * The dependency changes between a git ref and the working tree, from changed `package.json` files
+ * (direct dependencies) and changed lockfiles (everything else the lockfile gained or lost).
+ * Reads files and git only; no network.
+ */
+export async function collectDependencyChanges(cwd, ref) {
+    // The ref comes from the caller: resolve it to a commit id before it reaches `git diff` or `git show`.
+    const baseRef = await resolveGitCommit(cwd, "baseRef", ref);
     const changedManifests = await getChangedManifestPaths(cwd, baseRef);
     const changedLockfiles = await getChangedLockfilePaths(cwd, baseRef);
     const dependencyChanges = [];
@@ -198,6 +204,12 @@ export async function scanDelta(options = {}) {
             changedManifests.push(lockfileRel);
         }
     }
+    return { changedManifests, dependencyChanges };
+}
+export async function scanDelta(options = {}) {
+    const cwd = options.cwd ?? process.cwd();
+    const baseRef = options.baseRef ?? "HEAD";
+    const { changedManifests, dependencyChanges } = await collectDependencyChanges(cwd, baseRef);
     const introducedFindings = [];
     const resolvedFindings = [];
     // Evaluate newly added or modified dependencies

package/dist/scanner/delta-scan.js.map

@@ -1 +1 @@
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package/dist/scanner/lock-graph/bun.d.ts

@@ -0,0 +1,6 @@
+import { type LockGraph } from "./types.js";
+/** Remove comments and trailing commas, which `bun.lock` (JSONC) allows and `JSON.parse` does not. */
+export declare function stripJsonc(text: string): string;
+/** Parse the text `bun.lock` (Bun 1.2+). The binary `bun.lockb` is not supported. */
+export declare function parseBunLock(content: string): LockGraph;
+//# sourceMappingURL=bun.d.ts.map

package/dist/scanner/lock-graph/bun.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"bun.d.ts","sourceRoot":"","sources":["../../../src/scanner/lock-graph/bun.ts"],"names":[],"mappings":"AAAA,OAAO,EAAuB,KAAK,SAAS,EAAgC,MAAM,YAAY,CAAC;AAE/F,sGAAsG;AACtG,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAgC/C;AA2BD,qFAAqF;AACrF,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CA8CvD"}