autonomous-sdlc-harness 0.6.4 → 0.6.6

package/dist/generators/githubWorkflows.js

@@ -49,7 +49,7 @@
  *    for. A copy still carrying {@link UNPARSEABLE_CONTROL_IF_LINE} but otherwise edited is kept and
  *    reported as `controlRepair: { kind: 'edited' }`. It runs on every `init`, not only under
  *    {@link UPGRADE_WORKFLOWS_FLAG}, because the file carries no pin for that mode to key on and an
- *    unparseable copy disables comment control whichever command the adopter reaches for. It is a
+ *    unparsable copy disables comment control whichever command the adopter reaches for. It is a
  *    per-request `forceOverride: 'always'`, not a new `WritePolicy`, on choice 4's precedent: the
  *    engine's `.bak`-then-replace is the operation, and the re-run contract stays `create-if-absent`.
  *    The repair's `.bak` is deliberately not in the managed `.gitignore` block: the repair happens
@@ -103,10 +103,10 @@ export const IN_FLIGHT_RUNS_NOTE = "An upgrade reaches only the runs dropped aft
 export const UNPARSEABLE_CONTROL_RELEASES = {
     '0.6.1': 'dd014dc14bf19947182f4c95fa0bf011aba04fda354d9a6fa94242e86082bfa5',
 };
-/** The job-level `if:` line, trimmed, that made 0.6.1's `harness-control.yml` unparseable. */
+/** The job-level `if:` line, trimmed, that made 0.6.1's `harness-control.yml` unparsable. */
 const UNPARSEABLE_CONTROL_IF_LINE = "if: (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@sdlc-harness') && !contains(github.event.comment.body, '<!-- sdlc-harness')) || (github.event_name == 'pull_request_review' && github.event.review.state == 'changes_requested' && github.event.pull_request.head.repo.full_name == github.repository) || (github.event_name == 'issues' && contains(join(github.event.issue.labels.*.name, ','), 'sdlc-harness: ')) || (github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name == github.repository) || (github.event_name == 'delete' && github.event.ref_type == 'branch')";
 /**
- * The one producer of the route from an unparseable `harness-control.yml` to the fixed one. Complete
+ * The one producer of the route from an unparsable `harness-control.yml` to the fixed one. Complete
  * sentences ending in one `.`, ASCII only, no line break.
  */
 export function unparseableControlRoute(version) {

package/dist/generators/githubWorkflows.js.map

@@ -1 +1 @@
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package/dist/generators/harnessConfig.js

@@ -48,7 +48,7 @@
  */
 import { checkConfigShape, formatProblem, hasErrors } from '../config/check.js';
 import { configExists, loadConfig, saveConfig } from '../config/io.js';
-import { asQaDriver, CONFIG_FILENAME, CONFIG_VERSION, DEFAULTS, isPlaceholder, QA_DRIVER_IMPLEMENTED, qaDriverChoices, } from '../config/model.js';
+import { asQaDriver, CONFIG_FILENAME, CONFIG_VERSION, DEFAULTS, INIT_SCRIPTS_DIR, isPlaceholder, QA_DRIVER_IMPLEMENTED, qaDriverChoices, } from '../config/model.js';
 import { EXIT, HarnessError } from '../core/errors.js';
 import { branchResolves, checkedOutBranch, configuredInitDefaultBranch, hasCommits, remoteHeadBranch, } from '../core/git.js';
 import { defaultProjectName } from '../core/paths.js';
@@ -421,12 +421,12 @@ function resolveQaDriver(flag, ask, note, defer) {
  * `--qa-driver` without `--qa` and `--parity` without `--reference-impl` arms below are not
  * deferred: each is about a flag the adopter typed on this command line.
  */
-export function buildConfig({ repoRoot, detection, preset, flags, warn, noteIfWritten, warnIfWritten, askDriver, askRetrieval, }) {
+export function buildConfig({ repoRoot, detection, preset, flags, rebuiltScriptsDir, warn, noteIfWritten, warnIfWritten, askDriver, askRetrieval, }) {
     const report = warn ?? (() => { });
     const informIfWritten = noteIfWritten ?? (() => { });
     const defer = warnIfWritten ?? (() => { });
     const profile = preset ?? buildPreset(detection);
-    const scriptsDir = DEFAULTS.scriptsDir;
+    const scriptsDir = flags.scriptsDir ?? rebuiltScriptsDir ?? INIT_SCRIPTS_DIR;
     const defaultBranch = resolveDefaultBranch(repoRoot, flags.defaultBranch, defer, informIfWritten);
     const phases = { qa: flags.qa ?? false, docs: flags.docs ?? false, parity: flags.parity ?? false };
     const config = {
@@ -529,7 +529,7 @@ function keptQaDriverClause(config) {
  * The write itself, the `.bak` and the `--dry-run` suppression all belong to the write engine; this
  * generator has no filesystem-mutating call.
  */
-export function writeHarnessConfig({ repoRoot, detection, preset, flags, plan, resetConfig = false, dryRun = false, appDirSource = 'default', askDriver, askRetrieval, }) {
+export function writeHarnessConfig({ repoRoot, detection, preset, flags, rebuiltScriptsDir, plan, resetConfig = false, dryRun = false, appDirSource = 'default', askDriver, askRetrieval, }) {
     const warnings = [];
     const notes = [];
     // Both held back until `kept` is known, and published or dropped there — one list per stream
@@ -542,6 +542,7 @@ export function writeHarnessConfig({ repoRoot, detection, preset, flags, plan, r
         ...(preset === undefined ? {} : { preset }),
         ...(askDriver === undefined ? {} : { askDriver }),
         ...(askRetrieval === undefined ? {} : { askRetrieval }),
+        ...(rebuiltScriptsDir === undefined ? {} : { rebuiltScriptsDir }),
         flags,
         warn: (message) => warnings.push(message),
         warnIfWritten: (message) => ifWritten.push(message),
@@ -618,7 +619,11 @@ export function writeHarnessConfig({ repoRoot, detection, preset, flags, plan, r
         const appDirClause = appDirSource === 'config'
             ? `appDir is re-read from the file being rebuilt, so every layer scope is re-derived under the same application directory`
             : `appDir is ${JSON.stringify(detection.context.appDir)} — ${appDirSource === 'flag' ? 'the directory --app-dir named on this command line' : 'the repository root, because the file being rebuilt supplied no appDir this run could use'} — so every layer scope is re-derived under that directory`;
-        const consequence = `It is re-derived rather than restored: ${appDirClause}, but any value that lived only in the edited file — a phase toggle, an added protectedBranches entry, a corrected command line — becomes whatever detection and the flags say, so anything you meant to keep has to be given as a flag on this run or set again afterwards with \`config set\`.`;
+        // Conditioned on the flag too: a `--scripts-dir` on the same run wins over the re-read value.
+        const scriptsDirClause = rebuiltScriptsDir !== undefined && flags.scriptsDir === undefined
+            ? `; scriptsDir is re-read from the file being rebuilt as ${JSON.stringify(rebuiltScriptsDir)}, so the scripts already on disk stay where every reader looks for them; pass --scripts-dir <dir> to move it`
+            : '';
+        const consequence = `It is re-derived rather than restored: ${appDirClause}${scriptsDirClause}, but any value that lived only in the edited file — a phase toggle, an added protectedBranches entry, a corrected command line — becomes whatever detection and the flags say, so anything you meant to keep has to be given as a flag on this run or set again afterwards with \`config set\`.`;
         // The closing clause carries one exception, and it is stated here because this note is the
         // enumeration of what a rebuild costs. A guard still enforcing the pre-rebuild set is a state
         // the rebuild itself creates, so the run that creates it is the run that clears it

package/dist/generators/harnessConfig.js.map

@@ -1 +1 @@
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package/dist/generators/scripts.js

@@ -500,7 +500,7 @@ const UNRESOLVED_HEAD = 'harness_fail';
  * - the indentation test is **defensive rather than template-driven**: no wrapper template renders an
  *   indented forwarding line, so it buys nothing today and exists so that an adopter-edited wrapper
  *   that forwards from inside a conditional or a function is reported `unrecognised` rather than
- *   mis-read.
+ *   misread.
  *
  * {@link unresolvedBody} is substituted into `{{command}}` like any other body, so that wrapper's
  * rendered line *is* a line this rule matches. It is classified by its first token rather than

package/dist/machine/plugins.js

@@ -33,7 +33,7 @@
  *    CLI's own and a version it does not know means a newer CLI wrote it, while these belong to
  *    another program that may change them at any release.
  *
- * **Every failure is `undefined`, never a throw** — file absent, unreadable, unparseable, key
+ * **Every failure is `undefined`, never a throw** — file absent, unreadable, unparsable, key
  * absent, no usable row. A machine where the plugin is not installed is an answer a caller has
  * something correct to do with, which is the discipline `core/git.ts`'s `hasCommits` states for the
  * same reason: the one consumer is a `doctor` check, and "not installed" is a state it reports. It

package/dist/machine/registry.js

@@ -125,12 +125,12 @@ function parseEntry(value) {
  * The registry as it is on disk, or an empty one.
  *
  * **It fails open in every failure mode there is**: absent, unreadable (a permission bit, a bad
- * mount), unparseable, not a JSON object, `repos` not an object, or a `schema` this release does not
+ * mount), unparsable, not a JSON object, `repos` not an object, or a `schema` this release does not
  * recognise all read as "no repositories are registered" rather than throwing. A machine-scoped file
  * must not be able to stop a repository-scoped command, and this one is not consulted before
  * starting a run, so there is nothing a fault here could correctly block.
  *
- * That is the opposite of `readJsonFile`'s own contract, which throws on unparseable JSON so a later
+ * That is the opposite of `readJsonFile`'s own contract, which throws on unparsable JSON so a later
  * create-if-absent write cannot clobber a file the adopter merely mistyped. The trade is different
  * here and worth stating: an unreadable registry **is** rewritten by the next
  * {@link upsertRepository}, and that is acceptable because this file is *derived* state — every

package/dist/retrieval/models.js

@@ -21,10 +21,17 @@ import { HarnessError } from '../core/errors.js';
 import { loadRetrievalModule, retrievalModelCacheDir } from './runtime.js';
 /**
  * ONNX port of `BAAI/bge-small-en-v1.5`, MIT; about 33M parameters, per the upstream model card.
- * Loaded with `dtype: 'q8'`, CLS pooling and `normalize: true`, yielding {@link EMBEDDING_DIMENSIONS}
- * dimensions.
+ * Loaded with `dtype: 'q8'` and extracted with {@link EMBEDDING_EXTRACT_OPTIONS}, yielding
+ * {@link EMBEDDING_DIMENSIONS} dimensions.
  */
 export const EMBEDDING_MODEL = 'Xenova/bge-small-en-v1.5';
+/**
+ * The embedder's extraction options. Part of the embedder's identity, so a change to them bumps
+ * {@link MODEL_VERSION}. Exported for the eval's matched-precision leg
+ * (`evals/docs-retrieval/vector-agreement.mjs`), which loads the same model at fp32 and must extract
+ * exactly as this module does.
+ */
+export const EMBEDDING_EXTRACT_OPTIONS = { pooling: 'cls', normalize: true };
 /** bge-v1.5's retrieval instruction, prepended to queries only. */
 const EMBEDDING_QUERY_PREFIX = 'Represent this sentence for searching relevant passages: ';
 /**
@@ -70,7 +77,7 @@ async function loadModels(options) {
     env.allowRemoteModels = options.allowRemote;
     const extractor = await transformers.pipeline('feature-extraction', EMBEDDING_MODEL, { dtype: MODEL_DTYPE });
     const embed = async (texts) => {
-        const output = (await extractor(texts, { pooling: 'cls', normalize: true }));
+        const output = (await extractor(texts, EMBEDDING_EXTRACT_OPTIONS));
         return output.tolist();
     };
     const embedder = {

package/dist/retrieval/models.js.map

@@ -1 +1 @@
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package/dist/retrieval/refresh.js

@@ -11,12 +11,16 @@ import { join } from 'node:path';
 import { chunkMarkdown } from './chunk.js';
 import { corpusFiles } from './corpus.js';
 import { EMBEDDER_META_KEY } from './store.js';
-const EMBED_BATCH_SIZE = 32;
+/**
+ * Exported for `evals/docs-retrieval/vector-agreement.mjs`, which must embed in the same batches a
+ * cold refresh uses.
+ */
+export const EMBED_BATCH_SIZE = 32;
 /**
  * Refreshes `store` from the corpus of `config`: (1) an embedder id differing from the stored one,
  * or none stored, clears the index and records the new id; (2) every corpus file is chunked; (3) every
  * stored key not in that set is deleted; (4) chunks whose key is new or whose hash moved are embedded
- * in batches of 32 and upserted; (5) the rest count as unchanged.
+ * in batches of {@link EMBED_BATCH_SIZE} and upserted; (5) the rest count as unchanged.
  *
  * Expected cost: a document whose title changed re-embeds every one of its chunks, because the title
  * is part of each chunk's embedded `text`.

package/dist/retrieval/refresh.js.map

@@ -1 +1 @@
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+{"version":3,"file":"refresh.js","sourceRoot":"","sources":["../../src/retrieval/refresh.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACvC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAGjC,OAAO,EAAE,aAAa,EAAiB,MAAM,YAAY,CAAC;AAC1D,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE1C,OAAO,EAAE,iBAAiB,EAAiB,MAAM,YAAY,CAAC;AAe9D;;;GAGG;AACH,MAAM,CAAC,MAAM,gBAAgB,GAAG,EAAE,CAAC;AAEnC;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,OAKlC;IACC,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC;IAEtD,IAAI,OAAO,GAAG,KAAK,CAAC;IACpB,MAAM,cAAc,GAAG,MAAM,KAAK,CAAC,QAAQ,CAAC,iBAAiB,CAAC,CAAC;IAC/D,IAAI,cAAc,KAAK,QAAQ,CAAC,EAAE,EAAE,CAAC;QACnC,MAAM,KAAK,CAAC,KAAK,EAAE,CAAC;QACpB,MAAM,KAAK,CAAC,SAAS,CAAC,iBAAiB,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC;QACtD,OAAO,GAAG,cAAc,KAAK,SAAS,CAAC;IACzC,CAAC;IAED,MAAM,MAAM,GAAG,WAAW,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IAC7C,MAAM,MAAM,GAAe,MAAM,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,aAAa,CAAC,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC;IAE3H,MAAM,MAAM,GAAG,MAAM,KAAK,CAAC,eAAe,EAAE,CAAC;IAC7C,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC;IAC1D,MAAM,IAAI,GAAG,CAAC,GAAG,MAAM,CAAC,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;IACnE,MAAM,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC;IAE/B,MAAM,OAAO,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,KAAK,CAAC,IAAI,CAAC,CAAC;IAC/E,KAAK,IAAI,KAAK,GAAG,CAAC,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,EAAE,KAAK,IAAI,gBAAgB,EAAE,CAAC;QACtE,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,KAAK,EAAE,KAAK,GAAG,gBAAgB,CAAC,CAAC;QAC7D,MAAM,UAAU,GAAG,MAAM,QAAQ,CAAC,cAAc,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC;QACnF,MAAM,KAAK,CAAC,YAAY,CAAC,KAAK,EAAE,UAAU,CAAC,CAAC;IAC9C,CAAC;IAED,OAAO;QACL,KAAK,EAAE,MAAM,CAAC,KAAK,CAAC,MAAM;QAC1B,MAAM,EAAE,MAAM,CAAC,MAAM;QACrB,QAAQ,EAAE,OAAO,CAAC,MAAM;QACxB,SAAS,EAAE,MAAM,CAAC,MAAM,GAAG,OAAO,CAAC,MAAM;QACzC,OAAO,EAAE,IAAI,CAAC,MAAM;QACpB,OAAO;QACP,QAAQ,EAAE,MAAM,CAAC,QAAQ;KAC1B,CAAC;AACJ,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "autonomous-sdlc-harness",
-  "version": "0.6.4",
+  "version": "0.6.6",
   "description": "The outer loop of the autonomous SDLC harness: init, doctor, config and daemon management for the harness Claude Code plugin, plus opt-in local docs retrieval.",
   "license": "Apache-2.0",
   "author": "firu-daniel",

package/templates/github/workflows/harness-control.yml

@@ -23,6 +23,9 @@
 # `@sdlc-harness` anywhere, not in the exact command form, is read by one
 # read-only agent session running the plugin's mention-reading slash command,
 # which `remote-run.sh control` launches and whose decision it validates.
+# A comment job first asks `remote-run.sh control --needs-agent` whether that
+# session would start (THE AGENT CHECK below); the act step re-checks
+# everything.
 # Every decision lives in that script; this file carries only the events, the
 # permissions, a prefilter, the concurrency group, and on a comment job the
 # credential, the agent CLI and the pinned plugin that session needs.
@@ -69,7 +72,9 @@
 # finding 1).
 #
 # THE PERMISSIONS, declared because the default token may be read-only
-# (docs/github-integration-research.md, T2):
+# (docs/github-integration-research.md, T2). `permissions: {}` at workflow level
+# grants nothing, and they sit on the `control` job, whose block sets every
+# permission it does not list to `none`, so a job added later inherits nothing:
 #   contents: write        push a review round, and the contents read a
 #                          `stop --branch-gone` makes
 #   actions: write         dispatch, pause, stop and cancel runs, and read
@@ -137,9 +142,22 @@
 # therefore the release the run job installs. A pinned release older than
 # mentions carries no mention-reading command and gets `control`'s no-plugin
 # reply; the route is `init --upgrade-workflows` (docs/remote-execution.md,
-# `### Upgrading`). The three comment-only steps are `continue-on-error`, so a
-# failed install never blocks an exact-form command: `control` then finds no
-# agent binary or plugin and answers a mention with its exit-3 reply.
+# `### Upgrading`). The three comment-only steps run only when THE AGENT CHECK
+# below did not answer `no`, so an exact-form command now skips them. They stay
+# `continue-on-error`, so a failed install still never blocks one: `control`
+# then finds no agent binary or plugin and answers a mention with its exit-3
+# reply.
+#
+# THE AGENT CHECK. A comment job runs `remote-run.sh control --needs-agent`
+# before the three comment-only steps. It tells the exact command form apart
+# from a mention, then runs `control`'s gates 1 to 3 on a mention, and posts,
+# dispatches and writes nothing. Only its exit 2 (no session would start: an
+# ignored comment, an exact-form command or a refused commenter) writes
+# `agent=no`, which skips those steps. Every other outcome installs, as
+# before: an older script that does not know the flag, a failed permission
+# call, a failed step. A mention by an admitted commenter costs one extra
+# permission call. It is a saving, not the authority, as THE PREFILTER says of
+# the `if:`: the act step re-checks every rule.
 #
 # A REFUSAL IS A SUCCESS. `remote-run.sh control` exits 2 for a refusal it has
 # already replied to; that exit code is the script's contract with every other
@@ -159,7 +177,7 @@
 #     no token.
 #   * A value carrying `: ` or ` #` is never a plain scalar: write it as a
 #     block scalar (`>-`) or quote it. A plain scalar reads `: ` as a mapping
-#     indicator, which leaves the file unparseable, and ` #` as a comment,
+#     indicator, which leaves the file unparsable, and ` #` as a comment,
 #     which silently truncates the value (THE PREFILTER above).
 #
 # DECLARED MIRRORS — a rename on either side is an edit to both:
@@ -187,20 +205,44 @@
 #   remote-run.sh (the scriptsDir copy) IN_OAUTH, IN_API and
 #                                     HARNESS_MENTION_PLUGIN_DIR, the env
 #                                     interface `control` reads (its MENTION
-#                                     paragraph)
+#                                     paragraph); `control --needs-agent`,
+#                                     whose exit 2 alone means no session
+#                                     would start
 #
 # ACTION PINS.
-#   actions/checkout@v5
-#   actions/setup-node@v5
-# Each is the lowest major whose own action.yml declares `runs.using: node24`,
-# per a maintainer's lookups of each action's action.yml and release notes on
-# 2026-09-29T08:21Z (UTC). Each of those majors' release notes requires
-# Actions Runner 2.327.1 or newer; a GitHub-hosted runner already has it, and
-# a self-hosted one must run it (docs/remote-execution.md, section 8). A major
-# tag, not a commit sha: every action here is GitHub's own `actions/`
-# organisation, the owner of the runner and GITHUB_TOKEN this job already
-# trusts, and a major tag takes the action's own patch and security releases
-# where a sha would freeze your copy. Pin shas in your copy if you want them.
+#   actions/checkout          v5.1.0
+#   actions/setup-node        v5.0.0
+# Each `uses:` names the full commit sha of the release on the comment line
+# above it. Each release is in the lowest major whose own action.yml declares
+# `runs.using: node24`, per a maintainer's lookups of each action's action.yml
+# and release notes on 2026-09-29T08:21Z (UTC). Each of those majors' release
+# notes requires Actions Runner 2.327.1 or newer; a GitHub-hosted runner already
+# has it, and a self-hosted one must run it (docs/remote-execution.md, section
+# 8). A sha, not a tag: a tag is mutable, and this job holds write tokens and,
+# on a comment job, the Claude credential. `init --upgrade-workflows` does not
+# re-render this file (cli/src/generators/githubWorkflows.ts, choice 5), so a
+# pin moves only when `init --force` replaces it, after a `.bak`, with a newer
+# release's copy; a hand bump replaces the sha and its comment line together.
+# The version stays on its own line, never trailing the `uses:` value: a value
+# carrying ` #` is never a plain scalar.
+#
+# THE CHECKOUT CREDENTIAL. The checkout keeps the credential persisted, so
+# zizmor's `artipacked` finding stands on it: a review round runs
+# `remote-run.sh review` (`control_review`), whose `verb_review` pushes the
+# round through push-branch.sh (`hr_push_landed`) with that credential. This
+# workflow uploads no artifact, so none carries the checkout's .git/config. An
+# edit keeps it so: never point an upload-artifact `path:` inside the workspace
+# while the checkout persists its credential.
+#
+# THE CLAUDE CLI. `Install the claude CLI when absent` installs
+# @anthropic-ai/claude-code unpinned, and only when the runner has no `claude`,
+# exactly as harness-run.yml's step of the same name does. The latest is
+# wanted: the agent runner tracks the model API, and this file carries no pin
+# and is never upgraded by pin (choice 5 above), so a version frozen here would
+# never move. zizmor's `adhoc-packages` finding stands on it, and pinning does
+# not clear it: it flags `npm install -g @anthropic-ai/claude-code@2.1.284`
+# too, measured 2026-10-09. The audit-silent alternatives, `npx --yes` and
+# `curl | bash`, are the same install with less integrity checking.
 
 name: harness-control
 run-name: harness control ${{ github.event.issue.number || github.event.pull_request.number || github.event.ref }}
@@ -216,11 +258,7 @@ on:
     types: [closed]
   delete:
 
-permissions:
-  contents: write
-  actions: write
-  issues: write
-  pull-requests: write
+permissions: {}
 
 defaults:
   run:
@@ -231,6 +269,11 @@ jobs:
     if: >-
       (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@sdlc-harness') && !contains(github.event.comment.body, '<!-- sdlc-harness')) || (github.event_name == 'pull_request_review' && github.event.review.state == 'changes_requested' && github.event.pull_request.head.repo.full_name == github.repository) || (github.event_name == 'issues' && contains(join(github.event.issue.labels.*.name, ','), 'sdlc-harness: ')) || (github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name == github.repository) || (github.event_name == 'delete' && github.event.ref_type == 'branch')
     runs-on: ${{ vars.HARNESS_RUNNER || 'ubuntu-latest' }}
+    permissions:
+      contents: write
+      actions: write
+      issues: write
+      pull-requests: write
     concurrency:
       group: ${{ github.event_name == 'pull_request_review' && format('harness-review-{0}', github.event.pull_request.head.ref) || format('harness-control-{0}', github.run_id) }}
       cancel-in-progress: false
@@ -242,7 +285,8 @@ jobs:
       HARNESS_RUN_ACTORS: ${{ vars.HARNESS_RUN_ACTORS }}
     steps:
       - name: Check out the default branch
-        uses: actions/checkout@v5
+        # actions/checkout v5.1.0
+        uses: actions/checkout@fbc6f3992d24b796d5a048ff273f7fcc4a7b6c09
         with:
           ref: ${{ github.event.repository.default_branch }}
           token: ${{ github.token }}
@@ -269,17 +313,31 @@ jobs:
           git config user.name "github-actions[bot]"
           git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
 
-      - name: Set up Node
+      - name: Decide whether the comment needs the agent
+        id: needs
         if: github.event_name == 'issue_comment'
         continue-on-error: true
-        uses: actions/setup-node@v5
+        run: |
+          status=0
+          bash "$SCRIPTS_DIR/remote-run.sh" control --needs-agent || status=$?
+          if [ "$status" -eq 2 ]; then
+            echo "agent=no" >> "$GITHUB_OUTPUT"
+          else
+            echo "agent=yes" >> "$GITHUB_OUTPUT"
+          fi
+
+      - name: Set up Node
+        if: github.event_name == 'issue_comment' && steps.needs.outputs.agent != 'no'
+        continue-on-error: true
+        # actions/setup-node v5.0.0
+        uses: actions/setup-node@a0853c24544627f65ddf259abe73b1d18a591444
         with:
           node-version: '22'
           # As in harness-run.yml: no npm cache is used, and a lockfile-less repository must not fail this step.
           package-manager-cache: false
 
       - name: Install the claude CLI when absent
-        if: github.event_name == 'issue_comment'
+        if: github.event_name == 'issue_comment' && steps.needs.outputs.agent != 'no'
         continue-on-error: true
         run: |
           if ! command -v claude >/dev/null 2>&1; then
@@ -288,7 +346,7 @@ jobs:
           claude --version
 
       - name: Fetch the pinned plugin
-        if: github.event_name == 'issue_comment'
+        if: github.event_name == 'issue_comment' && steps.needs.outputs.agent != 'no'
         continue-on-error: true
         run: |
           pin=$(awk '/^[[:space:]]*HARNESS_CLI_VERSION:/ { sub(/^[[:space:]]*HARNESS_CLI_VERSION:[[:space:]]*/, ""); sub(/[[:space:]]+#.*$/, ""); sub(/[[:space:]]+$/, ""); gsub(/["\047]/, ""); print; exit }' .github/workflows/harness-run.yml 2>/dev/null || true)

package/templates/github/workflows/harness-resume.yml

@@ -49,10 +49,24 @@
 #     The job's `actions: write` covers listing and downloading its own
 #     workflow's artifacts.
 #
-# THE PERMISSIONS. `issues: write` and `pull-requests: write` serve `poll`'s
-# reports, which comment on the waiting run's issue or pull request; a
-# workflow-level `permissions:` block sets every permission it does not list to
-# `none`.
+# THE PERMISSIONS. `permissions: {}` at workflow level grants nothing, and the
+# `poll` job's own block sets every permission it does not list to `none`, so a
+# job added later inherits nothing. `issues: write` and `pull-requests: write`
+# serve `poll`'s reports, which comment on the waiting run's issue or pull
+# request.
+#
+# THE CHECKOUT CREDENTIAL. The `poll` checkout keeps the credential persisted,
+# so zizmor's `artipacked` finding stands on it: `poll` reaches origin through
+# git as well as `gh`. remote-run.sh's `remote_branch_exists` runs
+# `git ls-remote … origin` inside the checkout for every run it examines, and a
+# private repository refuses that call without the credential; `poll` would
+# then never see a deleted run branch, and never drop its poll state. The one
+# upload, `Upload the poller state`, takes its `path:` from POLL_STATE_DIR,
+# `<stateDir>/autonomous_logs/poll_state/current`, set by `Read the
+# configuration` from harness.config.json's `stateDir`: a subdirectory of the
+# state directory holding no `.git/`, so no artifact carries the checkout's
+# .git/config. An edit keeps it so: never point an upload-artifact `path:` at
+# the workspace root or at `.git/` while the checkout persists its credential.
 #
 # WHAT IT WRITES. The `harness-poll-state` artifact: the failed-dispatch and
 #   failed-download counts `poll` carries to the next tick, kept 7 days.
@@ -69,17 +83,19 @@
 #   cli/src/config/model.ts           DEFAULTS.scriptsDir, DEFAULTS.stateDir
 #
 # ACTION PINS.
-#   actions/checkout@v5
-#   actions/upload-artifact@v6
-# Each is the lowest major whose own action.yml declares `runs.using: node24`,
-# per a maintainer's lookups of each action's action.yml and release notes on
-# 2026-09-29T08:21Z (UTC). Each of those majors' release notes requires Actions
-# Runner 2.327.1 or newer; a GitHub-hosted runner already has it, and a
-# self-hosted one must run it (docs/remote-execution.md, section 8). A major
-# tag, not a commit sha: both are GitHub's own `actions/` organisation, the
-# owner of the runner and GITHUB_TOKEN this job already trusts, and a major tag
-# takes the action's own patch and security releases where a sha would freeze
-# your copy. Pin shas in your copy if you want them.
+#   actions/checkout          v5.1.0
+#   actions/upload-artifact   v6.0.0
+# Each `uses:` names the full commit sha of the release on the comment line
+# above it. Each release is in the lowest major whose own action.yml declares
+# `runs.using: node24`, per a maintainer's lookups of each action's action.yml
+# and release notes on 2026-09-29T08:21Z (UTC). Each of those majors' release
+# notes requires Actions Runner 2.327.1 or newer; a GitHub-hosted runner already
+# has it, and a self-hosted one must run it (docs/remote-execution.md, section
+# 8). A sha, not a tag: a tag is mutable, and this job holds write tokens. A pin
+# moves when `npx autonomous-sdlc-harness@<version> init --upgrade-workflows`
+# re-renders this file at a newer release's pins; a hand bump replaces the sha
+# and its comment line together. The version stays on its own line, never
+# trailing the `uses:` value: a value carrying ` #` is never a plain scalar.
 
 name: harness-resume
 
@@ -88,11 +104,7 @@ on:
     - cron: '*/30 * * * *'
   workflow_dispatch:
 
-permissions:
-  contents: read
-  actions: write
-  issues: write
-  pull-requests: write
+permissions: {}
 
 defaults:
   run:
@@ -101,6 +113,11 @@ defaults:
 jobs:
   poll:
     runs-on: ${{ vars.HARNESS_RUNNER || 'ubuntu-latest' }}
+    permissions:
+      contents: read
+      actions: write
+      issues: write
+      pull-requests: write
     # A hand-dispatched tick overlapping a scheduled one would dispatch twice.
     concurrency:
       group: harness-resume
@@ -115,7 +132,8 @@ jobs:
       HARNESS_PUSH_URL: ${{ secrets.HARNESS_PUSH_URL }}
     steps:
       - name: Check out the default branch
-        uses: actions/checkout@v5
+        # actions/checkout v5.1.0
+        uses: actions/checkout@fbc6f3992d24b796d5a048ff273f7fcc4a7b6c09
         with:
           ref: ${{ github.event.repository.default_branch }}
 
@@ -141,7 +159,8 @@ jobs:
 
       - name: Upload the poller state
         if: always() && env.POLL_STATE_DIR != ''
-        uses: actions/upload-artifact@v6
+        # actions/upload-artifact v6.0.0
+        uses: actions/upload-artifact@b7c566a772e6b6bfb58ed0dc250532a479d7789f
         with:
           name: harness-poll-state
           path: ${{ env.POLL_STATE_DIR }}