autodocs-engine 0.9.8 → 0.10.0

package/dist/execution-flow.js

@@ -0,0 +1,286 @@
+// src/execution-flow.ts — Execution flow tracing via forward BFS from entry points.
+// Detects labeled execution paths: "runPipeline → analyzePackage → buildSymbolGraph (3 steps)"
+// Uses spine-first tracing (full primary chain + fork paths) instead of fixed maxBranching.
+// Co-change Jaccard validates flows — our unique advantage over GitNexus.
+// ─── Constants ───────────────────────────────────────────────────────────────
+const MIN_CALL_GRAPH_EDGES = 10; // Skip flow detection for sparse graphs
+const MAX_TRACE_DEPTH = 10; // Maximum steps in a single flow
+const MIN_STEPS = 3; // Minimum steps for a meaningful flow
+const MAX_FORK_PATHS = 3; // Alternative callees explored at each spine node
+const MAX_TRACES_PER_ENTRY = 15; // Cap traces from a single entry point
+function makeNodeId(file, fn) {
+    return `${file}#${fn}`;
+}
+function nodeName(id) {
+    return id.split("#")[1];
+}
+function nodeFile(id) {
+    return id.split("#")[0];
+}
+// ─── Entry Point Scoring ─────────────────────────────────────────────────────
+// Boost: patterns that indicate genuine entry points in TS/JS
+const ENTRY_PATTERNS = /^(main|run|start|handle|execute|process|serve|init|bootstrap|listen|register|setup|configure|launch)/i;
+const ENTRY_SUFFIX_PATTERNS = /(?:Controller|Middleware|Handler|Router|Command|Plugin)$/;
+// Penalty: utility functions that are rarely true entry points
+const UTILITY_PATTERNS = /^(get|set|is|has|to|from|parse|format|validate|normalize|ensure|assert|check|clone|merge|map|filter|reduce|compose|pipe|wrap|create(?!.*Server))/i;
+// Exclude: test orchestration functions
+const TEST_PATTERNS = /^(describe|it|test|beforeEach|afterEach|beforeAll|afterAll|expect)$/;
+// Framework-specific: high-value entry points detected from dependencies
+const FRAMEWORK_PATTERNS = {
+    next: { patterns: [/^(getServerSideProps|getStaticProps|getStaticPaths|loader|action|default)$/], multiplier: 2.5 },
+    express: { patterns: [/Middleware$/i, /Router$/i], multiplier: 2.5 },
+    fastify: { patterns: [/Middleware$/i, /Router$/i], multiplier: 2.5 },
+    hono: { patterns: [/Middleware$/i, /Handler$/i], multiplier: 2.5 },
+    "@nestjs/core": { patterns: [/Controller$/i], multiplier: 2.5 },
+    "@nestjs/common": { patterns: [/Controller$/i], multiplier: 2.5 },
+};
+export function scoreEntryPoints(callGraph, publicAPI, dependencyInsights) {
+    // Build adjacency counts
+    const outDegree = new Map();
+    const inDegree = new Map();
+    const allNodes = new Set();
+    for (const edge of callGraph) {
+        const from = makeNodeId(edge.fromFile, edge.from);
+        const to = makeNodeId(edge.toFile, edge.to);
+        allNodes.add(from);
+        allNodes.add(to);
+        outDegree.set(from, (outDegree.get(from) ?? 0) + 1);
+        inDegree.set(to, (inDegree.get(to) ?? 0) + 1);
+    }
+    // Detect active frameworks for multipliers
+    const activeFrameworks = new Set();
+    if (dependencyInsights?.frameworks) {
+        for (const fw of dependencyInsights.frameworks) {
+            if (FRAMEWORK_PATTERNS[fw.name])
+                activeFrameworks.add(fw.name);
+        }
+    }
+    const exportedNames = new Set(publicAPI.filter((e) => !e.isTypeOnly).map((e) => e.name));
+    const scored = [];
+    for (const nodeId of allNodes) {
+        const fn = nodeName(nodeId);
+        const out = outDegree.get(nodeId) ?? 0;
+        const inD = inDegree.get(nodeId) ?? 0;
+        // Exclude test orchestration
+        if (TEST_PATTERNS.test(fn))
+            continue;
+        // Base: functions with high out-degree relative to in-degree are entry-like
+        const baseScore = (out + 1) / (inD + 1);
+        // Export boost: exported functions are more likely externally invoked
+        const exportMul = exportedNames.has(fn) ? 1.5 : 1.0;
+        // Zero-caller boost: exported with no internal callers = likely framework-invoked
+        const externalOnlyMul = inD === 0 && out >= 2 && exportedNames.has(fn) ? 1.8 : 1.0;
+        // Framework multiplier (checked first — overrides name penalty for framework entry points)
+        let frameworkMul = 1.0;
+        for (const fwName of activeFrameworks) {
+            const fw = FRAMEWORK_PATTERNS[fwName];
+            if (fw.patterns.some((p) => p.test(fn))) {
+                frameworkMul = Math.max(frameworkMul, fw.multiplier);
+            }
+        }
+        // Name pattern multiplier (skip penalty if framework multiplier already boosted)
+        let nameMul = 1.0;
+        if (ENTRY_PATTERNS.test(fn) || ENTRY_SUFFIX_PATTERNS.test(fn))
+            nameMul = 2.0;
+        else if (UTILITY_PATTERNS.test(fn) && frameworkMul <= 1.0)
+            nameMul = 0.3;
+        const score = baseScore * exportMul * externalOnlyMul * nameMul * frameworkMul;
+        if (score > 0)
+            scored.push({ nodeId, score });
+    }
+    // Dynamic cap: scale with codebase size
+    const maxEntries = Math.max(10, Math.min(200, Math.floor(allNodes.size / 10)));
+    scored.sort((a, b) => b.score - a.score);
+    return scored.slice(0, maxEntries);
+}
+export function traceFlows(callGraph, entries) {
+    // Build forward adjacency with out-degree for callee ranking
+    const adj = new Map();
+    const outDegree = new Map();
+    for (const edge of callGraph) {
+        const from = makeNodeId(edge.fromFile, edge.from);
+        const to = makeNodeId(edge.toFile, edge.to);
+        const callees = adj.get(from) ?? [];
+        callees.push(to);
+        adj.set(from, callees);
+        outDegree.set(to, (outDegree.get(to) ?? 0) + (adj.get(to)?.length ?? 0));
+    }
+    // Recount out-degree properly
+    for (const [node, callees] of adj) {
+        outDegree.set(node, callees.length);
+    }
+    const allFlows = [];
+    for (const entry of entries) {
+        const traces = [];
+        // PRIMARY SPINE: follow highest out-degree callee at each step (no branching limit)
+        const spine = traceSpine(entry.nodeId, adj, outDegree);
+        if (spine.length >= MIN_STEPS) {
+            traces.push({ nodeIds: spine });
+        }
+        // FORK PATHS: at each spine node, explore alternative callees
+        for (let i = 0; i < spine.length && traces.length < MAX_TRACES_PER_ENTRY; i++) {
+            const node = spine[i];
+            const callees = adj.get(node) ?? [];
+            if (callees.length <= 1)
+                continue; // No forks at this node
+            // Sort callees by out-degree descending, skip the spine callee
+            const spineNext = i + 1 < spine.length ? spine[i + 1] : null;
+            const forks = callees
+                .filter((c) => c !== spineNext)
+                .sort((a, b) => (outDegree.get(b) ?? 0) - (outDegree.get(a) ?? 0))
+                .slice(0, MAX_FORK_PATHS);
+            for (const fork of forks) {
+                // Trace a sub-spine from this fork point
+                const pathPrefix = spine.slice(0, i + 1);
+                const visited = new Set(pathPrefix);
+                if (visited.has(fork))
+                    continue;
+                const forkSpine = traceSpine(fork, adj, outDegree, visited);
+                const fullPath = [...pathPrefix, ...forkSpine];
+                if (fullPath.length >= MIN_STEPS) {
+                    traces.push({ nodeIds: fullPath });
+                }
+            }
+        }
+        allFlows.push(...traces);
+    }
+    return allFlows;
+}
+/** Trace a single spine: follow highest out-degree callee at each step. */
+function traceSpine(start, adj, outDegree, visited) {
+    const path = [start];
+    const seen = visited ?? new Set([start]);
+    if (visited)
+        seen.add(start);
+    let current = start;
+    for (let depth = 1; depth < MAX_TRACE_DEPTH; depth++) {
+        const callees = (adj.get(current) ?? []).filter((c) => !seen.has(c));
+        if (callees.length === 0)
+            break;
+        // Pick callee with highest out-degree (leads to deeper paths)
+        // Tie-break: alphabetical nodeId for determinism
+        callees.sort((a, b) => {
+            const diff = (outDegree.get(b) ?? 0) - (outDegree.get(a) ?? 0);
+            return diff !== 0 ? diff : a.localeCompare(b);
+        });
+        const next = callees[0];
+        seen.add(next);
+        path.push(next);
+        current = next;
+    }
+    return path;
+}
+// ─── Deduplication ───────────────────────────────────────────────────────────
+export function deduplicateFlows(candidates, maxFlows) {
+    // Sort by length descending — longer flows are preferred
+    const sorted = [...candidates].sort((a, b) => b.nodeIds.length - a.nodeIds.length);
+    // Phase 1: Subset removal — discard flows that are contiguous subpaths of a longer flow
+    const kept = [];
+    for (const flow of sorted) {
+        const isSubset = kept.some((existing) => isContiguousSubpath(flow.nodeIds, existing.nodeIds));
+        if (!isSubset)
+            kept.push(flow);
+    }
+    // Phase 2: Endpoint dedup — keep longest per (entry, terminal) pair
+    const byEndpoints = new Map();
+    for (const flow of kept) {
+        const key = `${flow.nodeIds[0]}::${flow.nodeIds[flow.nodeIds.length - 1]}`;
+        const existing = byEndpoints.get(key);
+        if (!existing || flow.nodeIds.length > existing.nodeIds.length) {
+            byEndpoints.set(key, flow);
+        }
+    }
+    return [...byEndpoints.values()].sort((a, b) => b.nodeIds.length - a.nodeIds.length).slice(0, maxFlows);
+}
+/** Check if `sub` is a contiguous subpath of `sup` (sliding window). */
+function isContiguousSubpath(sub, sup) {
+    if (sub.length >= sup.length)
+        return false;
+    for (let i = 0; i <= sup.length - sub.length; i++) {
+        if (sub.every((step, j) => step === sup[i + j]))
+            return true;
+    }
+    return false;
+}
+// ─── Co-Change Confidence ────────────────────────────────────────────────────
+function computeFlowConfidence(files, coChangeEdges) {
+    if (!coChangeEdges || coChangeEdges.length === 0 || files.length < 2)
+        return 0;
+    // Build fast pairwise Jaccard lookup
+    const jaccardMap = new Map();
+    for (const e of coChangeEdges) {
+        jaccardMap.set(`${e.file1}\0${e.file2}`, e.jaccard);
+        jaccardMap.set(`${e.file2}\0${e.file1}`, e.jaccard);
+    }
+    let total = 0;
+    let pairs = 0;
+    for (let i = 0; i < files.length - 1; i++) {
+        if (files[i] === files[i + 1])
+            continue; // Skip same-file adjacent steps
+        total += jaccardMap.get(`${files[i]}\0${files[i + 1]}`) ?? 0;
+        pairs++;
+    }
+    return pairs > 0 ? total / pairs : 0;
+}
+// ─── Label Generation ────────────────────────────────────────────────────────
+function generateLabel(steps, files) {
+    const uniqueFiles = new Set(files).size;
+    if (steps.length <= 4) {
+        return `${steps.join(" → ")} (${steps.length} steps, ${uniqueFiles} files)`;
+    }
+    return `${steps[0]} → ${steps[1]} → ... → ${steps[steps.length - 1]} (${steps.length} steps, ${uniqueFiles} files)`;
+}
+// ─── Public API ──────────────────────────────────────────────────────────────
+/**
+ * Enrich existing flows with co-change confidence scores.
+ * Called after git history is attached to the package analysis.
+ */
+export function enrichFlowConfidence(flows, coChangeEdges) {
+    for (const flow of flows) {
+        flow.confidence = computeFlowConfidence(flow.files, coChangeEdges);
+    }
+    // Re-sort by confidence
+    flows.sort((a, b) => b.confidence - a.confidence || b.length - a.length);
+}
+/**
+ * Detect execution flows via forward BFS from scored entry points.
+ * Returns empty array if call graph is too sparse (<10 edges) or package is React-only.
+ */
+export function computeExecutionFlows(callGraph, publicAPI, dependencyInsights, coChangeEdges) {
+    if (callGraph.length < MIN_CALL_GRAPH_EDGES)
+        return [];
+    // Score and select entry points
+    const entries = scoreEntryPoints(callGraph, publicAPI, dependencyInsights);
+    if (entries.length === 0)
+        return [];
+    // Trace flows via spine-first BFS
+    const rawFlows = traceFlows(callGraph, entries);
+    if (rawFlows.length === 0)
+        return [];
+    // Deduplicate
+    const functionCount = new Set(callGraph.flatMap((e) => [makeNodeId(e.fromFile, e.from), makeNodeId(e.toFile, e.to)]))
+        .size;
+    const maxFlows = Math.max(10, Math.min(200, Math.floor(functionCount / 10)));
+    const deduped = deduplicateFlows(rawFlows, maxFlows);
+    // Convert to ExecutionFlow with co-change confidence
+    const flows = deduped.map((raw) => {
+        const steps = raw.nodeIds.map(nodeName);
+        const files = raw.nodeIds.map(nodeFile);
+        const confidence = computeFlowConfidence(files, coChangeEdges);
+        return {
+            label: generateLabel(steps, files),
+            entryPoint: steps[0],
+            entryFile: files[0],
+            terminal: steps[steps.length - 1],
+            terminalFile: files[files.length - 1],
+            steps,
+            files,
+            length: steps.length,
+            confidence,
+        };
+    });
+    // Sort by confidence descending, then length descending
+    flows.sort((a, b) => b.confidence - a.confidence || b.length - a.length);
+    return flows;
+}
+//# sourceMappingURL=execution-flow.js.map

package/dist/execution-flow.js.map

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package/dist/git-history.js

@@ -8,8 +8,11 @@ import { relative, resolve } from "node:path";
 import { SOURCE_EXTENSIONS } from "./types.js";
 // ─── Constants ───────────────────────────────────────────────────────────────
 const MIN_COMMITS = 10;
-const MAX_COMMITS = 500;
-const MAX_DAYS = 90;
+const INITIAL_MAX_COMMITS = 500;
+const EXPANDED_MAX_COMMITS = 1000;
+const FULL_MAX_COMMITS = 2000;
+const MAX_DAYS = 365; // expanded from 90 — recency decay handles old data
+const MIN_USEFUL_EDGES = 5; // minimum co-change edges before expanding
 const MAX_FILES_PER_COMMIT = 30;
 const HUB_FILE_THRESHOLD = 0.7;
 const HUB_FILE_THRESHOLD_YOUNG = 0.9;
@@ -37,15 +40,23 @@ export function mineGitHistory(repoDir, packageDirs, warnings, options = {}) {
         });
         return null;
     }
-    const maxCommits = options.maxCommits ?? MAX_COMMITS;
     const maxDays = options.maxDays ?? MAX_DAYS;
-    const raw = runGitLog(absRepoDir, maxCommits, maxDays);
-    if (raw === null)
-        return null;
     const gitRoot = resolveGitRoot(absRepoDir);
     if (gitRoot === null)
         return null;
-    const allCommits = parseGitLog(raw);
+    // Adaptive windowing: start with 500 commits, expand if insufficient signal
+    const commitTargets = [options.maxCommits ?? INITIAL_MAX_COMMITS, EXPANDED_MAX_COMMITS, FULL_MAX_COMMITS];
+    let allCommits = [];
+    for (const target of commitTargets) {
+        if (allCommits.length >= target)
+            break; // already have enough from prior expansion
+        const raw = runGitLog(absRepoDir, target, maxDays);
+        if (raw === null)
+            return null;
+        allCommits = parseGitLog(raw);
+        if (allCommits.length >= target * 0.8)
+            break; // got most of what we asked for — no point expanding
+    }
     if (allCommits.length < MIN_COMMITS) {
         warnings.push({
             level: "info",

package/dist/git-history.js.map

@@ -1 +1 @@
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package/dist/implicit-coupling.d.ts

@@ -0,0 +1,7 @@
+import type { CoChangeEdge, FileImportEdge, ImplicitCouplingEdge } from "./types.js";
+/**
+ * Find co-change pairs that have NO import relationship in either direction.
+ * These are high-value signals for plan_change because they represent coupling
+ * that static analysis alone cannot detect.
+ */
+export declare function detectImplicitCoupling(coChangeEdges: CoChangeEdge[], importChain: FileImportEdge[]): ImplicitCouplingEdge[];

package/dist/implicit-coupling.js

@@ -0,0 +1,40 @@
+// src/implicit-coupling.ts — Detect co-change pairs with no import relationship.
+// These are "implicit coupling" — files that historically change together but have
+// no static dependency. They represent shared config, runtime registration, database
+// schema dependencies, or conventions that both files must follow.
+// Computed in the pipeline, stored in PackageAnalysis, served via queries.
+const MIN_JACCARD = 0.2; // Pairs below 20% Jaccard are filtered out (noise)
+const MIN_CO_CHANGE_COUNT = 3; // Require ≥3 commits where both files changed
+const MAX_EDGES = 20; // Cap output to top 20 pairs (avoid noise in large repos)
+/**
+ * Find co-change pairs that have NO import relationship in either direction.
+ * These are high-value signals for plan_change because they represent coupling
+ * that static analysis alone cannot detect.
+ */
+export function detectImplicitCoupling(coChangeEdges, importChain) {
+    // Build set of all import pairs (both directions)
+    const importPairs = new Set();
+    for (const edge of importChain) {
+        importPairs.add(`${edge.importer}\0${edge.source}`);
+        importPairs.add(`${edge.source}\0${edge.importer}`);
+    }
+    const results = [];
+    for (const edge of coChangeEdges) {
+        if (edge.jaccard < MIN_JACCARD || edge.coChangeCount < MIN_CO_CHANGE_COUNT)
+            continue;
+        // Check if there's an import relationship in either direction
+        const hasImport = importPairs.has(`${edge.file1}\0${edge.file2}`) || importPairs.has(`${edge.file2}\0${edge.file1}`);
+        if (!hasImport) {
+            results.push({
+                file1: edge.file1,
+                file2: edge.file2,
+                jaccard: edge.jaccard,
+                coChangeCount: edge.coChangeCount,
+            });
+        }
+    }
+    // Sort by jaccard descending, cap at MAX_EDGES
+    results.sort((a, b) => b.jaccard - a.jaccard);
+    return results.slice(0, MAX_EDGES);
+}
+//# sourceMappingURL=implicit-coupling.js.map

package/dist/implicit-coupling.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"implicit-coupling.js","sourceRoot":"","sources":["../src/implicit-coupling.ts"],"names":[],"mappings":"AAAA,iFAAiF;AACjF,mFAAmF;AACnF,qFAAqF;AACrF,mEAAmE;AACnE,2EAA2E;AAI3E,MAAM,WAAW,GAAG,GAAG,CAAC,CAAC,mDAAmD;AAC5E,MAAM,mBAAmB,GAAG,CAAC,CAAC,CAAC,8CAA8C;AAC7E,MAAM,SAAS,GAAG,EAAE,CAAC,CAAC,0DAA0D;AAEhF;;;;GAIG;AACH,MAAM,UAAU,sBAAsB,CACpC,aAA6B,EAC7B,WAA6B;IAE7B,kDAAkD;IAClD,MAAM,WAAW,GAAG,IAAI,GAAG,EAAU,CAAC;IACtC,KAAK,MAAM,IAAI,IAAI,WAAW,EAAE,CAAC;QAC/B,WAAW,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,QAAQ,KAAK,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;QACpD,WAAW,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,MAAM,KAAK,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC;IACtD,CAAC;IAED,MAAM,OAAO,GAA2B,EAAE,CAAC;IAE3C,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;QACjC,IAAI,IAAI,CAAC,OAAO,GAAG,WAAW,IAAI,IAAI,CAAC,aAAa,GAAG,mBAAmB;YAAE,SAAS;QAErF,8DAA8D;QAC9D,MAAM,SAAS,GACb,WAAW,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,KAAK,IAAI,CAAC,KAAK,EAAE,CAAC,IAAI,WAAW,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,KAAK,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC;QAErG,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,OAAO,CAAC,IAAI,CAAC;gBACX,KAAK,EAAE,IAAI,CAAC,KAAK;gBACjB,KAAK,EAAE,IAAI,CAAC,KAAK;gBACjB,OAAO,EAAE,IAAI,CAAC,OAAO;gBACrB,aAAa,EAAE,IAAI,CAAC,aAAa;aAClC,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,+CAA+C;IAC/C,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC;IAC9C,OAAO,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;AACrC,CAAC"}

package/dist/import-chain.js

@@ -9,7 +9,6 @@ import { discoverWorkspacePackages, readWorkspaceGlobs } from "./workspace-resol
 const DEFAULT_MIN_SYMBOLS = 1; // Track all import edges for MCP tools (analyze_impact, plan_change)
 const DEFAULT_MIN_DEPENDENTS = 3;
 const DEFAULT_MAX_RULES = 5;
-const MAX_DISPLAY_SYMBOLS = 5;
 const MAX_DISPLAY_IMPORTERS = 3;
 // ─── Import Chain Computation ────────────────────────────────────────────────
 /**
@@ -25,11 +24,13 @@ export function computeImportChain(symbolGraph, packageDir, warnings, minSymbols
     for (const [importerFile, imports] of symbolGraph.importGraph) {
         // Group imported symbols by resolved source file
         const symbolsBySource = new Map();
+        const resolutionBySource = new Map();
         const fromDir = dirname(resolve(packageDir, importerFile));
         for (const imp of imports) {
             if (imp.importedNames.length === 0)
                 continue; // Skip bare imports
             let sourceFile;
+            let resolutionType = "relative";
             if (imp.moduleSpecifier.startsWith(".")) {
                 // Relative imports: resolution depends on fromDir
                 const cacheKey = `${imp.moduleSpecifier}\0${fromDir}`;
@@ -38,6 +39,7 @@ export function computeImportChain(symbolGraph, packageDir, warnings, minSymbols
                     sourceFile = resolveModuleSpecifier(imp.moduleSpecifier, fromDir, packageDir, warnings);
                     relativeCache.set(cacheKey, sourceFile);
                 }
+                resolutionType = "relative";
             }
             else if (workspaceEntries.length > 0) {
                 // Workspace aliases: resolution is dir-independent
@@ -46,6 +48,7 @@ export function computeImportChain(symbolGraph, packageDir, warnings, minSymbols
                     sourceFile = resolveWorkspaceAlias(imp.moduleSpecifier, workspaceEntries, packageDir);
                     aliasCache.set(imp.moduleSpecifier, sourceFile);
                 }
+                resolutionType = "workspace-alias";
             }
             if (!sourceFile)
                 continue;
@@ -53,20 +56,26 @@ export function computeImportChain(symbolGraph, packageDir, warnings, minSymbols
                 continue; // Skip self-imports
             const symbols = symbolsBySource.get(sourceFile) ?? new Set();
             for (const name of imp.importedNames) {
-                // Skip namespace imports (e.g., "* as foo")
                 if (!name.startsWith("*"))
                     symbols.add(name);
             }
             symbolsBySource.set(sourceFile, symbols);
+            // Track best resolution type per source file
+            if (!resolutionBySource.has(sourceFile) || resolutionType === "relative") {
+                resolutionBySource.set(sourceFile, resolutionType);
+            }
         }
         // Keep only high-coupling pairs
         for (const [sourceFile, symbols] of symbolsBySource) {
             if (symbols.size >= minSymbols) {
+                const resolution = resolutionBySource.get(sourceFile) ?? "relative";
                 edges.push({
                     importer: importerFile,
                     source: sourceFile,
                     symbolCount: symbols.size,
-                    symbols: [...symbols].slice(0, MAX_DISPLAY_SYMBOLS),
+                    symbols: [...symbols],
+                    confidence: resolution === "relative" ? 0.95 : 0.85,
+                    resolution,
                 });
             }
         }

package/dist/import-chain.js.map

@@ -1 +1 @@
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package/dist/index.js

@@ -3,6 +3,7 @@
 import { resolve } from "node:path";
 import { formatDeterministic as formatDeterministicImpl, formatHierarchical, formatHierarchicalDeterministic as formatHierarchicalDeterministicImpl, formatWithLLM, } from "./llm-adapter.js";
 import { runPipeline } from "./pipeline.js";
+import { discoverWorkspacePackages, readWorkspaceGlobs } from "./workspace-resolver.js";
 export { formatBudgetReport, validateBudget } from "./budget-validator.js";
 export { generateMinimalAgentsMd } from "./deterministic-formatter.js";
 export { diffAnalyses } from "./diff-analyzer.js";
@@ -23,16 +24,34 @@ const DEFAULTS = {
     verbose: false,
     metaToolThreshold: 5,
     noMetaTool: false,
+    typeChecking: false,
 };
 /**
  * Analyze one or more packages and produce a StructuredAnalysis.
  * This is the core intelligence engine — pure computation + file reads.
  */
 export async function analyze(options) {
+    let packages = options.packages.map((p) => resolve(p));
+    let rootDir = options.rootDir ? resolve(options.rootDir) : undefined;
+    // Auto-detect workspace packages: if a single directory has workspace globs,
+    // expand to the individual workspace packages (monorepo root → workspace packages).
+    // This makes MCP and CLI automatically analyze real source packages, not empty roots.
+    if (packages.length === 1 && !rootDir) {
+        const root = packages[0];
+        const globs = readWorkspaceGlobs(root);
+        if (globs.length > 0) {
+            const workspacePkgs = discoverWorkspacePackages(root, globs);
+            if (workspacePkgs.length > 0) {
+                packages = workspacePkgs;
+                rootDir = root;
+            }
+        }
+    }
     const config = {
         ...DEFAULTS,
         ...options,
-        packages: options.packages.map((p) => resolve(p)),
+        packages,
+        rootDir,
         output: { ...DEFAULTS.output, ...options.output },
         llm: { ...DEFAULTS.llm, ...options.llm },
         conventions: { ...DEFAULTS.conventions, ...options.conventions },