npm - autodocs-engine - Versions diffs - 0.10.3 → 0.10.4 - Mend

autodocs-engine 0.10.3 → 0.10.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (5) hide show

package/dist/git-history.js CHANGED Viewed

@@ -3,7 +3,7 @@
 // Produces WorkflowRule entries: "When modifying X → also check Y, Z"
 // Uses Jaccard similarity for symmetric, unbiased co-change scoring.
 import { execFileSync } from "node:child_process";
-import { existsSync } from "node:fs";
+import { existsSync, realpathSync } from "node:fs";
 import { relative, resolve } from "node:path";
 import { SOURCE_EXTENSIONS } from "./types.js";
 // ─── Constants ───────────────────────────────────────────────────────────────
@@ -21,7 +21,7 @@ const MIN_CO_CHANGES = 3;
 const MAX_EDGES = 50;
 const MAX_RULES = 5;
 const MAX_DISPLAY_PARTNERS = 3;
-const RECENCY_DAYS = 45; // co-change pair must have at least 1 co-change within this window
+const RECENCY_DAYS = 180; // co-change pair must have at least 1 co-change within this window (6 months)
 const MIN_CLUSTER_SIZE = 3; // minimum files to form a co-change cluster
 // ─── Public API ──────────────────────────────────────────────────────────────
 /**
@@ -29,7 +29,9 @@ const MIN_CLUSTER_SIZE = 3; // minimum files to form a co-change cluster
  * Returns a map from package directory to GitHistoryAnalysis, or null if git is unavailable.
  */
 export function mineGitHistory(repoDir, packageDirs, warnings, options = {}) {
-    const absRepoDir = resolve(repoDir);
+    // realpathSync resolves symlinks (e.g., macOS /tmp → /private/tmp)
+    // so that relative() works correctly against git's resolved --show-toplevel
+    const absRepoDir = realpathSync(resolve(repoDir));
     // Detect shallow clone
     if (isShallowClone(absRepoDir)) {
         warnings.push({
@@ -66,7 +68,7 @@ export function mineGitHistory(repoDir, packageDirs, warnings, options = {}) {
     }
     const results = new Map();
     for (const pkgDir of packageDirs) {
-        const absPkgDir = resolve(pkgDir);
+        const absPkgDir = realpathSync(resolve(pkgDir));
         const pkgPrefix = relative(gitRoot, absPkgDir);
         // Filter commits to only files within this package that still exist
         const existingFiles = new Set();

package/dist/git-history.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/visualizer.js CHANGED Viewed

@@ -1,18 +1,16 @@
-// src/visualizer.ts — Full-viewport codebase topology visualization.
-// The graph IS the page. Structural imports + behavioral co-change edges
-// rendered simultaneously on a dark canvas. Click to explore blast radius.
+// src/visualizer.ts — Full-viewport file-level codebase topology visualization.
+// Every file is a node. Files cluster by directory via force simulation.
+// Import edges + co-change edges + implicit coupling rendered simultaneously.
 export function generateReport(analysis) {
     const pkg = analysis.packages[0];
     if (!pkg)
         return "<html><body><p>No packages found.</p></body></html>";
-    const graph = buildGraphData(pkg);
-    const importData = (pkg.importChain ?? []).map((e) => [e.source, e.importer, e.symbolCount]);
+    const graph = buildFileGraph(pkg);
     const cochangeData = (pkg.gitHistory?.coChangeEdges ?? []).map((e) => [
         e.file1,
         e.file2,
         Math.round(e.jaccard * 100),
     ]);
-    const clusterData = pkg.coChangeClusters ?? [];
     const statsHtml = [
         ["Files", pkg.files.total],
         ["Imports", pkg.importChain?.length ?? 0],
@@ -65,7 +63,8 @@ svg{display:block;width:100%;height:100%}
 .panel .sub{font-size:12px;color:#555;margin-bottom:16px}
 .panel h3{font-size:10px;text-transform:uppercase;letter-spacing:0.08em;color:#444;margin:14px 0 6px}
 .panel ul{list-style:none}
-.panel li{font-size:12px;padding:4px 0;display:flex;justify-content:space-between;align-items:center;border-bottom:1px solid #111}
+.panel li{font-size:12px;padding:4px 0;display:flex;justify-content:space-between;align-items:center;border-bottom:1px solid #111;cursor:pointer;border-radius:4px;padding:4px 6px;transition:background 0.15s}
+.panel li:hover{background:rgba(255,255,255,0.04)}
 .panel li:last-child{border:none}
 .panel code{font-size:11px;color:#8a8a9a}
 .badge{font-size:9px;padding:1px 6px;border-radius:99px;font-weight:600}
@@ -76,8 +75,8 @@ svg{display:block;width:100%;height:100%}
 .close-btn:hover{color:#888}
 .drawer{position:fixed;bottom:0;left:0;right:0;z-index:10;pointer-events:none}
 .drawer>*{pointer-events:auto}
-.dtoggle{display:flex;justify-content:center;padding:8px}
-.dtoggle button{font-size:11px;padding:4px 16px;border-radius:99px 99px 0 0;border:1px solid #1a1a24;border-bottom:none;background:#0d0d14;color:#666;cursor:pointer}
+.dtoggle{display:flex;justify-content:center}
+.dtoggle button{font-size:11px;padding:4px 16px;border-radius:6px 6px 0 0;border:1px solid #1a1a24;border-bottom:none;background:#0d0d14;color:#666;cursor:pointer}
 .dtoggle button:hover{color:#999}
 .dcontent{background:#0d0d14;border-top:1px solid #1a1a24;max-height:0;overflow:hidden;transition:max-height 0.3s ease}
 .dcontent.open{max-height:300px;overflow-y:auto}
@@ -93,6 +92,33 @@ svg{display:block;width:100%;height:100%}
 .cv-no{border-color:#f87171;background:rgba(248,113,113,0.05);color:#777}
 .cd{font-size:9px;color:#555}
 .hint{position:fixed;bottom:50px;left:50%;transform:translateX(-50%);font-size:12px;color:#333;z-index:5;transition:opacity 0.5s}
+/* ── Default visual state (all via CSS so .sel class can override) ── */
+.n-c{opacity:1;stroke-width:1px}
+.n-t{opacity:1;font-size:8px;font-weight:500}
+.edge-i{opacity:0.2;stroke-width:0.4px}
+.edge-c{opacity:0.5;stroke-width:1.2px}
+.edge-m{opacity:0.5;stroke-width:1.2px}
+.hull-v{fill-opacity:0.05;stroke-opacity:0.15;stroke-width:1.5px}
+.dir-l{opacity:0.7;font-size:13px}
+/* ── Selection: dim everything with one class toggle ── */
+svg.sel .n-c{opacity:0.12;filter:none}
+svg.sel .n-t{opacity:0.15}
+svg.sel .edge-i,svg.sel .edge-c,svg.sel .edge-m{opacity:0.03}
+svg.sel .hull-v{fill-opacity:0.02;stroke-opacity:0.06;stroke-width:1.5px}
+svg.sel .dir-l{opacity:0.25;font-size:13px}
+/* ── Highlight tiers (override dim) ── */
+svg.sel .hl>.n-c,svg.sel .n-c.hl{opacity:1}
+svg.sel .hl>.n-t,svg.sel .n-t.hl{opacity:1}
+svg.sel .hl-conn>.n-c{opacity:0.8}
+svg.sel .hl-conn>.n-t{opacity:0.8}
+svg.sel .hl-ext>.n-c{opacity:0.5}
+svg.sel .hl-ext>.n-t{opacity:0.5}
+svg.sel .hl-sel>.n-c{opacity:1;stroke-width:2px}
+svg.sel .hl-sel>.n-t{opacity:1;font-size:11px;font-weight:700}
+svg.sel .edge-i.hl{opacity:0.55;stroke-width:0.8px}
+svg.sel .edge-c.hl,svg.sel .edge-m.hl{opacity:0.7;stroke-width:1.4px}
+svg.sel .hull-v.hl{fill-opacity:0.12;stroke-opacity:0.6;stroke-width:2.5px}
+svg.sel .dir-l.hl{opacity:1;font-size:15px}
 </style>
 </head>
 <body>
@@ -105,8 +131,10 @@ svg{display:block;width:100%;height:100%}
   <span><i class="leg-imp"></i>import</span>
   <span><i class="leg-coc" style="border:1px dashed #c59a28;height:0;width:20px"></i>co-change</span>
   <span><i class="leg-impl" style="border:1px dotted #b44e8a;height:0;width:20px"></i>implicit coupling</span>
+  <span style="margin-left:8px;opacity:0.6">|</span>
+  <span>color = directory group</span>
 </div>
-<div class="hint" id="hint">click a module to explore its blast radius</div>
+<div class="hint" id="hint">click a file to explore its connections</div>
 <svg id="graph"></svg>
 <div class="panel" id="panel">
   <button class="close-btn" onclick="closePanel()">&times;</button>
@@ -124,81 +152,290 @@ svg{display:block;width:100%;height:100%}
 <script src="https://cdn.jsdelivr.net/npm/d3@7/dist/d3.min.js"></script>
 <script>
 const G=${JSON.stringify(graph)};
-const IM=${JSON.stringify(importData)};
 const CC=${JSON.stringify(cochangeData)};
-const CL=${JSON.stringify(clusterData)};
 const PAL=['#7aa2f7','#4ade80','#c59a28','#f87171','#a78bfa','#e879a0','#38bdf8','#fb923c'];
 const W=innerWidth,H=innerHeight;
 const svg=d3.select('#graph').attr('viewBox',[0,0,W,H]);
-const maxW=Math.max(1,...G.edges.map(e=>e.weight));
-const maxF=Math.max(1,...G.nodes.map(n=>n.files));
 const NC=G.nodes.length;
-const spread=Math.min(W,H)*0.35;
+const maxImp=Math.max(1,...G.nodes.map(n=>n.importedBy));
+// Directory cluster centers — spread across the full viewport
+const dirs=[...new Set(G.nodes.map(n=>n.dir))];
+const dirCenters={};
+dirs.forEach((d,i)=>{
+  const angle=(2*Math.PI*i)/dirs.length - Math.PI/2;
+  const rx=W*0.38,ry=H*0.36;
+  dirCenters[d]={x:W/2+Math.cos(angle)*rx, y:H/2+Math.sin(angle)*ry};
+});
+// Directory label colors
+const dirColor={};
+dirs.forEach((d,i)=>{dirColor[d]=PAL[i%PAL.length]});
+// Force simulation — strong directory clustering, strong inter-cluster repulsion
 const sim=d3.forceSimulation(G.nodes)
-  .force('link',d3.forceLink(G.edges).id(d=>d.id).distance(220))
-  .force('charge',d3.forceManyBody().strength(NC>12?-1200:NC>6?-1800:-2400))
-  .force('center',d3.forceCenter(W/2,H/2))
-  .force('collision',d3.forceCollide().radius(d=>30+Math.sqrt(d.files/maxF)*35))
-  .force('x',d3.forceX(W/2).strength(0.02))
-  .force('y',d3.forceY(H/2).strength(0.02));
-const link=svg.append('g').selectAll('line').data(G.edges).join('line')
-  .attr('stroke',d=>d.type==='cochange'?'#c59a28':d.type==='implicit'?'#b44e8a':'#222')
-  .attr('stroke-width',d=>d.type==='cochange'||d.type==='implicit'?1.5:Math.max(0.8,Math.sqrt(d.weight/maxW)*4))
-  .attr('stroke-dasharray',d=>d.type==='cochange'?'6,4':d.type==='implicit'?'2,3':'none')
-  .attr('opacity',d=>d.type==='import'?0.35:0.5);
+  .force('link',d3.forceLink(G.edges).id(d=>d.id).distance(30).strength(0.15))
+  .force('charge',d3.forceManyBody().strength(-80))
+  .force('collision',d3.forceCollide().radius(14))
+  .force('x',d3.forceX(d=>dirCenters[d.dir].x).strength(0.35))
+  .force('y',d3.forceY(d=>dirCenters[d.dir].y).strength(0.35));
+// ── Pre-computed indexes (built once, used everywhere) ──
+// 1. dirNodes: dir → node[] (eliminates repeated G.nodes.filter per dir)
+const dirNodes={};
+dirs.forEach(d=>{dirNodes[d]=[]});
+G.nodes.forEach(n=>dirNodes[n.dir].push(n));
+// 2. Resolved edge IDs: after forceLink init, source/target are objects.
+//    Pre-resolve to avoid typeof checks at every call site (~15 occurrences).
+G.edges.forEach(e=>{e._s=e.source.id||e.source;e._t=e.target.id||e.target});
+// 3. adj: nodeId → edge[] (eliminates full edge scans on selection)
+const adj={};
+G.nodes.forEach(n=>{adj[n.id]=[]});
+G.edges.forEach(e=>{adj[e._s].push(e);if(e._s!==e._t)adj[e._t].push(e)});
+// 4. nodeById: fast node lookup for navTo
+const nodeById={};
+G.nodes.forEach(n=>{nodeById[n.id]=n});
+// Directory group hulls
+const hullLayer=svg.append('g');
+const hullPad=30;
+const hulls=hullLayer.selectAll('path').data(dirs).join('path')
+  .attr('class','hull-v')
+  .attr('fill',d=>dirColor[d]).attr('stroke',d=>dirColor[d])
+  .attr('stroke-linejoin','round').attr('pointer-events','none');
+// Directory name labels — prominent, above hull
+const dirLabels=hullLayer.selectAll('text').data(dirs).join('text')
+  .attr('class','dir-l')
+  .attr('text-anchor','middle')
+  .attr('fill',d=>dirColor[d])
+  .attr('font-weight','700')
+  .attr('paint-order','stroke').attr('stroke','#0a0a0f').attr('stroke-width',4)
+  .text(d=>{const p=d.split('/');return p.at(-1)||d})
+  .style('cursor','pointer')
+  .on('click',(e,d)=>{e.stopPropagation();selectDir(d)});
+function computeHullPath(points,pad){
+  if(points.length<1)return'';
+  if(points.length===1)return'M'+(points[0][0]-pad)+','+(points[0][1]-pad)+' a'+pad+','+pad+' 0 1,0 '+(pad*2)+',0 a'+pad+','+pad+' 0 1,0 '+(-pad*2)+',0';
+  if(points.length===2){const[a,b]=points;const dx=b[0]-a[0],dy=b[1]-a[1],len=Math.sqrt(dx*dx+dy*dy)||1;const nx=-dy/len*pad,ny=dx/len*pad;const expanded=[[a[0]+nx,a[1]+ny],[b[0]+nx,b[1]+ny],[b[0]-nx,b[1]-ny],[a[0]-nx,a[1]-ny]];const cx=d3.mean(expanded,p=>p[0]),cy=d3.mean(expanded,p=>p[1]);const rounded=expanded.map(p=>{const ddx=p[0]-cx,ddy=p[1]-cy,l=Math.sqrt(ddx*ddx+ddy*ddy)||1;return[p[0]+ddx/l*pad*0.5,p[1]+ddy/l*pad*0.5]});return'M'+rounded.map(p=>p[0]+','+p[1]).join('L')+'Z'}
+  const hull=d3.polygonHull(points);
+  if(!hull)return'';
+  // Expand hull outward by pad
+  const cx=d3.mean(hull,p=>p[0]),cy=d3.mean(hull,p=>p[1]);
+  const expanded=hull.map(p=>{const dx=p[0]-cx,dy=p[1]-cy,len=Math.sqrt(dx*dx+dy*dy)||1;return[p[0]+dx/len*pad,p[1]+dy/len*pad]});
+  return'M'+expanded.map(p=>p[0]+','+p[1]).join('L')+'Z';
+}
+// Glow filters
 const defs=svg.append('defs');
 const glow=defs.append('filter').attr('id','glow');
 glow.append('feGaussianBlur').attr('stdDeviation','3').attr('result','blur');
-const m=glow.append('feMerge');m.append('feMergeNode').attr('in','blur');m.append('feMergeNode').attr('in','SourceGraphic');
+const mg=glow.append('feMerge');mg.append('feMergeNode').attr('in','blur');mg.append('feMergeNode').attr('in','SourceGraphic');
+// Edges — invisible wide hit-area lines behind visible edges for easier clicking
+const linkG=svg.append('g');
+const linkHit=linkG.selectAll('line.hit').data(G.edges).join('line')
+  .attr('class','hit').attr('stroke','transparent').attr('stroke-width',12)
+  .style('cursor','pointer')
+  .on('click',(e,d)=>{e.stopPropagation();selectEdge(d)});
+const link=linkG.selectAll('line.vis').data(G.edges).join('line')
+  .attr('class',d=>d.type==='cochange'?'vis edge-c':d.type==='implicit'?'vis edge-m':'vis edge-i')
+  .attr('stroke',d=>d.type==='cochange'?'#c59a28':d.type==='implicit'?'#b44e8a':'#1a1a1f')
+  .attr('stroke-dasharray',d=>d.type==='cochange'?'5,3':d.type==='implicit'?'2,3':'none')
+  .attr('pointer-events','none');
+// Interactive hull overlay — between edges and nodes so hull gaps are draggable
+const hullInteract=svg.append('g').selectAll('path').data(dirs).join('path')
+  .attr('fill','transparent').attr('stroke','none')
+  .attr('pointer-events','all').style('cursor','pointer')
+  .on('click',(e,d)=>{e.stopPropagation();selectDir(d)});
+// File nodes — on top so individual node drag/click takes priority
 const node=svg.append('g').selectAll('g').data(G.nodes).join('g')
   .call(d3.drag().on('start',(e,d)=>{if(!e.active)sim.alphaTarget(.3).restart();d.fx=d.x;d.fy=d.y})
-    .on('drag',(e,d)=>{d.fx=e.x;d.fy=e.y}).on('end',(e,d)=>{if(!e.active)sim.alphaTarget(0);d.fx=null;d.fy=null}))
-  .on('click',(e,d)=>{e.stopPropagation();selectNode(d)})
+    .on('drag',(e,d)=>{d.fx=e.x;d.fy=e.y}).on('end',(e,d)=>{if(!e.active)sim.alphaTarget(0)}))
+  .on('click',(e,d)=>{e.stopPropagation();selectFile(d)})
   .style('cursor','pointer');
 node.append('circle')
-  .attr('r',d=>16+Math.sqrt(d.files/maxF)*32)
-  .attr('fill',d=>d.group>=0?PAL[d.group%PAL.length]+'22':'#151520')
-  .attr('stroke',d=>d.group>=0?PAL[d.group%PAL.length]:'#282830')
-  .attr('stroke-width',1.5);
-function lbl(d){const p=d.id.split('/');if(p.length<=1)return d.id||'root';const l=p.at(-1);return G.nodes.filter(n=>n.id.split('/').at(-1)===l).length>1?p.slice(-2).join('/'):l}
-node.append('text').text(d=>lbl(d))
-  .attr('text-anchor','middle').attr('dy',d=>-(22+Math.sqrt(d.files/maxF)*34))
-  .attr('font-size','13px').attr('fill','#888').attr('font-weight','600')
-  .attr('paint-order','stroke').attr('stroke','#0a0a0f').attr('stroke-width',4);
-node.append('text').text(d=>d.files)
-  .attr('text-anchor','middle').attr('dy',6)
-  .attr('font-size','13px').attr('fill','#555').attr('font-weight','700');
+  .attr('class','n-c')
+  .attr('r',d=>5+Math.sqrt(d.importedBy/maxImp)*14)
+  .attr('fill',d=>dirColor[d.dir]+'33')
+  .attr('stroke',d=>dirColor[d.dir]);
+// ALL files get labels
+node.append('text')
+  .attr('class','n-t')
+  .text(d=>d.name)
+  .attr('text-anchor','middle')
+  .attr('dy',d=>-(9+Math.sqrt(d.importedBy/maxImp)*14))
+  .attr('fill','#555')
+  .attr('paint-order','stroke').attr('stroke','#0a0a0f').attr('stroke-width',3);
+const pad=50;
+// Per-dir tick cache: hull path string, centroid x, min y (reused by hull + labels)
+const dirTick={};dirs.forEach(d=>{dirTick[d]={path:'',cx:0,minY:0}});
 sim.on('tick',()=>{
+  // Clamp nodes to viewport
+  G.nodes.forEach(d=>{d.x=Math.max(pad,Math.min(W-pad,d.x));d.y=Math.max(pad,Math.min(H-pad,d.y))});
+  // Update edge positions
   link.attr('x1',d=>d.source.x).attr('y1',d=>d.source.y).attr('x2',d=>d.target.x).attr('y2',d=>d.target.y);
+  linkHit.attr('x1',d=>d.source.x).attr('y1',d=>d.source.y).attr('x2',d=>d.target.x).attr('y2',d=>d.target.y);
+  // Update node positions
   node.attr('transform',d=>\`translate(\${d.x},\${d.y})\`);
+  // Compute per-dir hull + label data in a single pass (was 3 separate filter scans per dir)
+  for(const d of dirs){
+    const ns=dirNodes[d];
+    if(!ns.length){dirTick[d].path='';continue}
+    const pts=ns.map(n=>[n.x,n.y]);
+    dirTick[d].path=computeHullPath(pts,hullPad);
+    let sx=0,minY=Infinity;
+    for(let i=0;i<ns.length;i++){sx+=ns[i].x;if(ns[i].y<minY)minY=ns[i].y}
+    dirTick[d].cx=sx/ns.length;
+    dirTick[d].minY=minY;
+  }
+  hulls.attr('d',d=>dirTick[d].path);
+  hullInteract.attr('d',d=>dirTick[d].path);
+  dirLabels.attr('x',d=>dirTick[d].cx).attr('y',d=>dirTick[d].minY-(hullPad+8));
 });
-function selectNode(d){
+function clearHighlights(){
+  node.classed('hl',false).classed('hl-sel',false).classed('hl-conn',false).classed('hl-ext',false);
+  node.select('circle').attr('filter',null);
+  link.classed('hl',false).attr('stroke',d=>d.type==='cochange'?'#c59a28':d.type==='implicit'?'#b44e8a':'#1a1a1f');
+  hulls.classed('hl',false);
+  dirLabels.classed('hl',false);
+}
+function selectFile(d){
   document.getElementById('hint').style.opacity='0';
-  node.select('circle').attr('opacity',.15).attr('filter',null);
-  link.attr('opacity',.04);
-  node.filter(n=>n.id===d.id).select('circle').attr('opacity',1).attr('filter','url(#glow)').attr('stroke-width',2.5);
+  clearHighlights();
+  svg.classed('sel',true);
+  // Highlight selected node (1 element)
+  node.filter(n=>n.id===d.id).classed('hl-sel',true).select('circle').attr('filter','url(#glow)');
+  // Build connected set + categorized edges from adjacency index
+  const myEdges=adj[d.id]||[];
   const conn=new Set();
-  G.edges.forEach(e=>{const s=typeof e.source==='object'?e.source.id:e.source,t=typeof e.target==='object'?e.target.id:e.target;if(s===d.id)conn.add(t);if(t===d.id)conn.add(s)});
-  node.filter(n=>conn.has(n.id)).select('circle').attr('opacity',.85);
-  link.filter(e=>{const s=typeof e.source==='object'?e.source.id:e.source,t=typeof e.target==='object'?e.target.id:e.target;return s===d.id||t===d.id}).attr('opacity',.9);
-  const dir=d.id;
-  const imp=IM.filter(e=>(e[0].startsWith(dir+'/')||e[0]===dir)&&!e[1].startsWith(dir+'/'));
-  const coc=CC.filter(e=>((e[0].startsWith(dir+'/')||e[0]===dir)&&!e[1].startsWith(dir+'/'))||((e[1].startsWith(dir+'/')||e[1]===dir)&&!e[0].startsWith(dir+'/')));
+  const imp=[],impBy=[];
+  for(const e of myEdges){
+    const other=e._s===d.id?e._t:e._s;
+    conn.add(other);
+    if(e.type==='import'){if(e._s===d.id)imp.push(e);else impBy.push(e)}
+  }
+  // Highlight connected nodes
+  node.filter(n=>conn.has(n.id)).classed('hl-conn',true);
+  // Highlight connected edges (brighter stroke, no filter, no raise)
+  link.filter(e=>e._s===d.id||e._t===d.id).classed('hl',true)
+    .attr('stroke',e=>e.type==='cochange'?'#e8b83a':e.type==='implicit'?'#d468a8':'#556');
+  // Panel
+  const path=d.id;
+  const coc=CC.filter(e=>e[0]===path||e[1]===path);
   const seen=new Set();const ucoc=coc.filter(e=>{const k=e[0]+e[1];if(seen.has(k))return false;seen.add(k);return true});
-  const cl=CL.filter(c=>c.some(f=>f.startsWith(dir+'/')||f===dir));
+  let h='<h2>'+d.name+'</h2>';
+  h+='<div class="sub">'+d.dir+'/ &middot; imported by '+d.importedBy+' files</div>';
+  if(impBy.length){h+='<h3>Imported by ('+impBy.length+')</h3><ul>';impBy.slice(0,10).forEach(e=>{h+='<li onclick="navTo(\\''+e._s+'\\')"><code>'+e._s.split('/').pop()+'</code><span class="badge badge-b">'+e.weight+'</span></li>'});h+='</ul>'}
+  if(imp.length){h+='<h3>Imports ('+imp.length+')</h3><ul>';imp.slice(0,10).forEach(e=>{h+='<li onclick="navTo(\\''+e._t+'\\')"><code>'+e._t.split('/').pop()+'</code><span class="badge badge-b">'+e.weight+'</span></li>'});h+='</ul>'}
+  if(ucoc.length){h+='<h3>Co-changes</h3><ul>';ucoc.slice(0,8).forEach(e=>{const p=e[0]===path?e[1]:e[0];h+='<li onclick="navTo(\\''+p+'\\')"><code>'+p.split('/').pop()+'</code><span class="badge badge-a">'+e[2]+'%</span></li>'});h+='</ul>'}
+  document.getElementById('panel-content').innerHTML=h;
+  document.getElementById('panel').classList.add('open');
+}
+function selectDir(dir){
+  document.getElementById('hint').style.opacity='0';
+  clearHighlights();
+  svg.classed('sel',true);
+  // Highlight selected directory hull + label (2 elements)
+  hulls.filter(d=>d===dir).classed('hl',true);
+  dirLabels.filter(d=>d===dir).classed('hl',true);
+  // Highlight all files in this directory
+  node.filter(d=>d.dir===dir).classed('hl',true);
+  // Build dir file set from pre-computed dirNodes
+  const files=dirNodes[dir]||[];
+  const dirFileSet=new Set(files.map(n=>n.id));
+  // Highlight connected edges (brighter stroke, no filter, no raise)
+  link.filter(e=>dirFileSet.has(e._s)||dirFileSet.has(e._t)).classed('hl',true)
+    .attr('stroke',e=>e.type==='cochange'?'#e8b83a':e.type==='implicit'?'#d468a8':'#556');
+  // Find connected external nodes via adjacency index
+  const connNodes=new Set();
+  for(const f of files){
+    for(const e of adj[f.id]||[]){
+      const other=e._s===f.id?e._t:e._s;
+      if(!dirFileSet.has(other))connNodes.add(other);
+    }
+  }
+  node.filter(n=>connNodes.has(n.id)).classed('hl-ext',true);
+  // Panel
+  const totalImp=files.reduce((s,f)=>s+f.importedBy,0);
   let h='<h2>'+dir+'/</h2>';
-  h+='<div class="sub">'+d.files+' files &middot; '+d.imports+' imported &middot; '+d.exports+' exported</div>';
-  if(imp.length){h+='<h3>Imported by ('+imp.length+')</h3><ul>';imp.slice(0,10).forEach(e=>{h+='<li><code>'+e[1].split('/').slice(-2).join('/')+'</code><span class="badge badge-b">'+e[2]+'</span></li>'});h+='</ul>'}
-  if(ucoc.length){h+='<h3>Co-change partners</h3><ul>';ucoc.slice(0,6).forEach(e=>{const p=(e[0].startsWith(dir+'/')||e[0]===dir)?e[1]:e[0];h+='<li><code>'+p.split('/').slice(-2).join('/')+'</code><span class="badge badge-a">'+e[2]+'%</span></li>'});h+='</ul>'}
-  if(cl.length){h+='<h3>Cluster membership</h3><ul>';cl.forEach(c=>{h+='<li><span>'+c.length+'-file cluster</span><span class="badge badge-p">clique</span></li>'});h+='</ul>'}
-  if(!imp.length&&!ucoc.length&&!cl.length){h+='<div style="color:#333;padding:16px 0">No external dependencies detected</div>'}
+  h+='<div class="sub">'+files.length+' files &middot; '+totalImp+' total imports</div>';
+  h+='<h3>Files</h3><ul>';
+  files.slice().sort((a,b)=>b.importedBy-a.importedBy).forEach(f=>{
+    h+='<li onclick="navTo(\\''+f.id+'\\')"><code>'+f.name+'</code><span class="badge badge-b">'+f.importedBy+'</span></li>';
+  });
+  h+='</ul>';
+  const dirPrefix=dir+'/';
+  const coc=CC.filter(e=>(e[0].startsWith(dirPrefix)&&!e[1].startsWith(dirPrefix))||(e[1].startsWith(dirPrefix)&&!e[0].startsWith(dirPrefix)));
+  if(coc.length){
+    const seen=new Set();const ucoc=coc.filter(e=>{const k=e[0]+e[1];if(seen.has(k))return false;seen.add(k);return true});
+    h+='<h3>Co-changes with other dirs</h3><ul>';
+    ucoc.slice(0,8).forEach(e=>{const p=e[0].startsWith(dirPrefix)?e[1]:e[0];h+='<li onclick="navTo(\\''+p+'\\')"><code>'+p.split('/').pop()+'</code><span class="badge badge-a">'+e[2]+'%</span></li>'});
+    h+='</ul>';
+  }
+  document.getElementById('panel-content').innerHTML=h;
+  document.getElementById('panel').classList.add('open');
+}
+function selectEdge(d){
+  document.getElementById('hint').style.opacity='0';
+  clearHighlights();
+  svg.classed('sel',true);
+  const s=d._s,t=d._t;
+  // Highlight the two endpoint nodes
+  node.filter(n=>n.id===s||n.id===t).classed('hl',true).select('circle').attr('filter','url(#glow)');
+  // Highlight the clicked edge
+  link.filter(e=>(e._s===s&&e._t===t)||(e._s===t&&e._t===s)).classed('hl',true)
+    .attr('stroke',d.type==='cochange'?'#e8b83a':d.type==='implicit'?'#d468a8':'#7aa2f7');
+  // Panel content
+  const sName=s.split('/').pop(), tName=t.split('/').pop();
+  const typeLabel=d.type==='cochange'?'Co-change':d.type==='implicit'?'Implicit Coupling':'Import';
+  const typeColor=d.type==='cochange'?'badge-a':d.type==='implicit'?'badge-p':'badge-b';
+  let h='<h2>Connection</h2>';
+  h+='<div class="sub"><span class="badge '+typeColor+'">'+typeLabel+'</span></div>';
+  h+='<h3>Source</h3><ul><li onclick="navTo(\\''+s+'\\')"><code>'+sName+'</code></li></ul>';
+  h+='<h3>Target</h3><ul><li onclick="navTo(\\''+t+'\\')"><code>'+tName+'</code></li></ul>';
+  if(d.type==='import'){h+='<h3>Symbols imported</h3><ul><li>'+d.weight+' symbol'+(d.weight!==1?'s':'')+'</li></ul>'}
+  if(d.type==='cochange'){h+='<h3>Co-change similarity</h3><ul><li>Jaccard: '+d.weight+'%</li></ul><p style="font-size:11px;color:#555;margin-top:8px">These files frequently change together in commits, suggesting a functional relationship.</p>'}
+  if(d.type==='implicit'){h+='<h3>Coupling strength</h3><ul><li>Jaccard: '+d.weight+'%</li></ul><p style="font-size:11px;color:#555;margin-top:8px">These files co-change in commits but have no direct import relationship\\u2014a potential hidden dependency.</p>'}
   document.getElementById('panel-content').innerHTML=h;
   document.getElementById('panel').classList.add('open');
 }
+function navTo(fileId){
+  const target=nodeById[fileId];
+  if(target)selectFile(target);
+}
 function closePanel(){
   document.getElementById('panel').classList.remove('open');
-  node.select('circle').attr('opacity',1).attr('filter',null).attr('stroke-width',1.5);
-  link.attr('opacity',d=>d.type==='import'?.35:.5);
+  svg.classed('sel',false);
+  clearHighlights();
 }
 svg.on('click',()=>closePanel());
 function toggleDrawer(){document.getElementById('drawer').classList.toggle('open')}
@@ -206,77 +443,49 @@ function toggleDrawer(){document.getElementById('drawer').classList.toggle('open
 </body>
 </html>`;
 }
-function buildGraphData(pkg) {
+function buildFileGraph(pkg) {
     const importEdges = pkg.importChain ?? [];
     const coChangeEdges = pkg.gitHistory?.coChangeEdges ?? [];
     const implicitEdges = pkg.implicitCoupling ?? [];
-    const clusters = pkg.coChangeClusters ?? [];
-    const ds = new Map();
-    const de = new Map();
+    // Collect all files and their import counts
+    const files = new Map(); // path → importedBy count
     for (const e of importEdges) {
-        const f = fdir(e.importer);
-        const t = fdir(e.source);
-        for (const d of [f, t])
-            if (!ds.has(d))
-                ds.set(d, { files: new Set(), imports: 0, exports: 0 });
-        ds.get(f).files.add(e.importer);
-        ds.get(t).files.add(e.source);
-        ds.get(f).imports += e.symbolCount;
-        ds.get(t).exports += e.symbolCount;
-        if (f !== t) {
-            const k = `${f}|${t}`;
-            de.set(k, (de.get(k) ?? 0) + e.symbolCount);
-        }
-    }
-    const ce = new Map();
-    for (const e of coChangeEdges) {
-        const a = fdir(e.file1);
-        const b = fdir(e.file2);
-        if (a === b)
-            continue;
-        const k = [a, b].sort().join("|");
-        ce.set(k, (ce.get(k) ?? 0) + e.jaccard);
-    }
-    const ie = new Map();
-    for (const e of implicitEdges) {
-        const a = fdir(e.file1);
-        const b = fdir(e.file2);
-        if (a === b)
-            continue;
-        const k = [a, b].sort().join("|");
-        ie.set(k, (ie.get(k) ?? 0) + e.jaccard);
+        if (!files.has(e.importer))
+            files.set(e.importer, 0);
+        files.set(e.source, (files.get(e.source) ?? 0) + 1);
     }
-    const dc = new Map();
-    for (let i = 0; i < clusters.length; i++) {
-        for (const f of clusters[i]) {
-            const d = fdir(f);
-            if (!dc.has(d))
-                dc.set(d, i);
-        }
-    }
-    const nodes = [...ds.entries()].map(([id, s]) => ({
-        id,
-        files: s.files.size,
-        imports: s.imports,
-        exports: s.exports,
-        group: dc.get(id) ?? -1,
+    const nodes = [...files.entries()].map(([path, importedBy]) => ({
+        id: path,
+        name: path.split("/").pop(),
+        dir: fdir(path),
+        importedBy,
     }));
+    const fileSet = new Set(files.keys());
     const edges = [];
-    for (const [k, w] of de) {
-        const [s, t] = k.split("|");
-        edges.push({ source: s, target: t, weight: w, type: "import" });
+    // Import edges (file to file)
+    for (const e of importEdges) {
+        edges.push({ source: e.importer, target: e.source, weight: e.symbolCount, type: "import" });
     }
-    for (const [k, w] of ce) {
-        const [s, t] = k.split("|");
-        if (!de.has(`${s}|${t}`) && !de.has(`${t}|${s}`)) {
-            edges.push({ source: s, target: t, weight: Math.round(w * 20), type: "cochange" });
+    // Co-change edges (only between files that are in the graph)
+    for (const e of coChangeEdges) {
+        if (fileSet.has(e.file1) && fileSet.has(e.file2)) {
+            edges.push({
+                source: e.file1,
+                target: e.file2,
+                weight: Math.round(e.jaccard * 100),
+                type: "cochange",
+            });
         }
     }
-    for (const [k, w] of ie) {
-        const [s, t] = k.split("|");
-        const ck = [s, t].sort().join("|");
-        if (!ce.has(ck) && !de.has(`${s}|${t}`) && !de.has(`${t}|${s}`)) {
-            edges.push({ source: s, target: t, weight: Math.round(w * 15), type: "implicit" });
+    // Implicit coupling edges
+    for (const e of implicitEdges) {
+        if (fileSet.has(e.file1) && fileSet.has(e.file2)) {
+            edges.push({
+                source: e.file1,
+                target: e.file2,
+                weight: Math.round(e.jaccard * 100),
+                type: "implicit",
+            });
         }
     }
     return { nodes, edges };

package/dist/visualizer.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "autodocs-engine",
-  "version": "0.10.3",
+  "version": "0.10.4",
   "description": "Codebase intelligence for AI coding agents — MCP server with git co-change analysis, convention detection, execution flows, and type-aware analysis",
   "type": "module",
   "main": "dist/index.js",