autodev-cli 1.4.0 → 1.4.4

package/out/periodicActions.js

@@ -0,0 +1,237 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.PeriodicActionManager = exports.PERIODIC_ACTIONS = void 0;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+exports.PERIODIC_ACTIONS = [
+    // ─── Compact context ─────────────────────────────────────────────────────
+    // ⚠️  WARNING: Auto-compact can cause INFINITE LOOPS!
+    // When compact runs, it loads all instruction files → context fills up →
+    // triggers another compact → infinite loop. KEEP THIS DISABLED (0) unless
+    // you're using a provider with native compact that doesn't reload instructions.
+    // Use manual compact (sidebar button) instead of auto-compact.
+    {
+        id: 'compact',
+        label: 'Auto compact',
+        settingKey: 'compactEveryNTasks',
+        icon: '🗜',
+        type: 'compact',
+        prompt: '', // unused — compact is a tool action, not an AI prompt
+    },
+    // ─── Skill files ──────────────────────────────────────────────────────────
+    // Protocol ref: media/profile/04-skill-files.md
+    {
+        id: 'skill',
+        label: 'Make skill',
+        settingKey: 'skillEveryNTasks',
+        icon: '📚',
+        prompt: `Before continuing to the next task, update your skills based on recent learnings. 
+    If you discovered a new best practice, anti-pattern, or gotcha worth formalizing into a skill, create or update a markdown file in .claude/skills/ named after the pattern (e.g. .claude/skills/error-handling.md). The file should contain a concise description of the pattern, when to apply it, and an example. If the pattern is a gotcha or anti-pattern, clearly explain the potential pitfall and how to avoid it. 
+    Your skills are your personal best practices distilled from experience in this codebase — use them to level up your performance on future tasks. 
+    Update AGENTS.md with a one-paragraph summary of the new skill and why it matters. Then continue — pick up any new tasks .
+
+    `,
+    },
+    // ─── Memory / dated files ─────────────────────────────────────────────────
+    // Protocol ref: media/profile/02-memory-mcp.md
+    {
+        id: 'memory',
+        label: 'Update memory',
+        settingKey: 'memoryEveryNTasks',
+        icon: '🧠',
+        prompt: `Before continuing to the next task, consolidate what you have learned from recent tasks into the dated memory file system.
+
+For each new durable fact (architectural discovery, decision, convention, gotcha, runbook, or bug fix) from recent work:
+1. Check .autodev/MEMORY.md — if a memory file for this topic already exists, update it in place instead of creating a duplicate.
+2. Otherwise create .autodev/memories/MEMORY-YYYY-MM-DD-slug.md with format:
+   # slug (YYYY-MM-DD)
+   type: <architecture|decision|bug|convention|gotcha|runbook>
+   
+   <concise fact — one paragraph max>
+3. Append one line to .autodev/MEMORY.md:
+   - [YYYY-MM-DD slug](memories/MEMORY-YYYY-MM-DD-slug.md)
+   Create .autodev/MEMORY.md with a "# Memory Index" heading if it does not exist.
+
+Also update SUMMARY.md with any new architectural bullets, and .autodev/LESSONS.md (using dated lesson files in .autodev/lessons/) if any preventable mistakes occurred.
+
+Do NOT store credentials in memory files — use Memory MCP for credentials. Then continue — pick up any new tasks.`,
+    },
+    // ─── Full project summary ─────────────────────────────────────────────────
+    // Protocol ref: media/profile/01-learning.md
+    {
+        id: 'summary',
+        label: 'Write summary',
+        settingKey: 'summaryEveryNTasks',
+        icon: '📋',
+        prompt: `Before continuing to the next task, write a comprehensive up-to-date project state summary to SUMMARY.md in the project root. Cover: current architecture overview, module map, naming conventions, key files (entry points, config, router, DB schema), exact build & run commands (dev and prod), known gotchas, recent decisions, and non-obvious dependencies. If the file already exists, update it — preserve all valid existing content and add new learnings. Keep every entry concise — one bullet per fact. Then continue — pick up any new tasks .`,
+    },
+    // ─── Prune TODO.md ──────────────────────────────────────────────────────
+    // Moves completed [x] lines out of TODO.md into DONE.md.
+    // No AI prompt — done entirely by the extension.
+    {
+        id: 'pruneTodo',
+        label: 'Prune TODO',
+        settingKey: 'pruneTodoEveryNTasks',
+        icon: '🧹',
+        type: 'pruneTodo',
+        prompt: '', // unused — handled by the extension, not the AI
+    },
+    // ─── Journal auto-learn ──────────────────────────────────────────────────
+    // Prompts the agent to review dated journal files and distil patterns into dated lesson files.
+    {
+        id: 'journalLearn',
+        label: 'Auto-Learn (Journal Review)',
+        settingKey: 'journalLearnEveryNTasks',
+        icon: '🔬',
+        type: 'prompt',
+        prompt: `You are performing an autonomous research journal review. Follow these steps exactly:
+
+1. Read .autodev/JOURNAL.md index. Open all journal files in .autodev/journals/ that do not yet have a '## Auto-learn' marker at the bottom.
+2. For each unreviewed journal file, tally:
+   - Any hypothesis type in 2+ 'discard' rows → recurring anti-pattern.
+   - Any approach in 2+ 'keep' rows → best practice worth formalising.
+   - Any 'keep' row with ΔC = '-' → simplification win.
+   - Any row where Outcome contradicted Hypothesis → knowledge gap.
+3. For each new pattern: check .autodev/LESSONS.md index — if a lesson file for this topic already exists, update it in place. Otherwise create .autodev/lessons/LESSON-YYYY-MM-DD-slug.md:
+   # slug (YYYY-MM-DD)
+   type: <anti-pattern|best-practice|simplification|knowledge-gap>
+   
+   <one sentence: what it is and why it matters in this codebase>
+   Then append one line to .autodev/LESSONS.md:
+   - [YYYY-MM-DD slug](lessons/LESSON-YYYY-MM-DD-slug.md)
+   Create .autodev/LESSONS.md with a '# Lessons Index' heading if missing.
+4. If any pattern appears 3+ times and is actionable, check for a matching skill file in .claude/skills/. Create or update it.
+5. Append to each reviewed journal file: '## Auto-learn YYYY-MM-DD' followed by a one-sentence summary of what was learned.
+6. Commit: git add .autodev/JOURNAL.md .autodev/journals/ .autodev/LESSONS.md .autodev/lessons/ && git commit -m 'chore: auto-learn journal review'
+7. Continue immediately with the next task — do not wait or ask for confirmation.`,
+    },
+];
+// ---------------------------------------------------------------------------
+// PeriodicActionManager
+// ---------------------------------------------------------------------------
+class PeriodicActionManager {
+    _state = new Map();
+    _ensureState(id) {
+        if (!this._state.has(id)) {
+            this._state.set(id, { counter: 0, lastTriggeredAt: 0, lastTriggeredTime: null });
+        }
+        return this._state.get(id);
+    }
+    /** Reset all counters (call at loop start). */
+    reset() {
+        this._state.clear();
+    }
+    /**
+     * Reset all counters and persist the cleared state to .autodev/loop-state.json.
+     * Call at loop start.
+     */
+    resetAndPersist(workspaceRoot) {
+        this._state.clear();
+        if (workspaceRoot) {
+            this._persist(0, workspaceRoot);
+        }
+    }
+    /**
+     * Increment all action counters by 1.
+     * @param iteration Current loop iteration number (used for debug state).
+     * @param workspaceRoot If provided, persists loop-state.json to .autodev/.
+     */
+    increment(iteration, workspaceRoot) {
+        for (const action of exports.PERIODIC_ACTIONS) {
+            const s = this._ensureState(action.id);
+            s.counter++;
+        }
+        if (workspaceRoot) {
+            this._persist(iteration, workspaceRoot);
+        }
+    }
+    /** Returns the actions whose counter has reached or exceeded the configured interval. */
+    getDue(settings) {
+        return exports.PERIODIC_ACTIONS.filter(action => {
+            const interval = settings[action.settingKey] ?? 0;
+            if (interval <= 0) {
+                return false;
+            }
+            return this._ensureState(action.id).counter >= interval;
+        });
+    }
+    /**
+     * Reset the counter for a specific action after it has been handled.
+     * Records the iteration + timestamp it was triggered at.
+     */
+    markHandled(id, iteration, workspaceRoot) {
+        const s = this._ensureState(id);
+        s.counter = 0;
+        s.lastTriggeredAt = iteration;
+        s.lastTriggeredTime = new Date().toISOString();
+        if (workspaceRoot) {
+            this._persist(iteration, workspaceRoot);
+        }
+    }
+    /** Returns the current counter value for an action (for debug / display). */
+    getCount(id) {
+        return this._state.get(id)?.counter ?? 0;
+    }
+    /** Snapshot of all action states — used for debug persistence. */
+    snapshot() {
+        const out = {};
+        for (const [id, s] of this._state) {
+            out[id] = { ...s };
+        }
+        return out;
+    }
+    /**
+     * Write .autodev/loop-state.json with current iteration + per-action counters.
+     * Safe — silently ignores write errors.
+     */
+    _persist(iteration, workspaceRoot) {
+        try {
+            const dir = path.join(workspaceRoot, '.autodev');
+            if (!fs.existsSync(dir)) {
+                fs.mkdirSync(dir, { recursive: true });
+            }
+            const payload = {
+                iteration,
+                updatedAt: new Date().toISOString(),
+                actions: this.snapshot(),
+            };
+            fs.writeFileSync(path.join(dir, 'loop-state.json'), JSON.stringify(payload, null, 2), 'utf8');
+        }
+        catch { /* non-fatal */ }
+    }
+}
+exports.PeriodicActionManager = PeriodicActionManager;
+//# sourceMappingURL=periodicActions.js.map

package/out/periodicActions.js.map

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package/out/profileBuilder.d.ts

@@ -0,0 +1,29 @@
+export interface ProfileSection {
+    /** Slug used in HTML comment markers and settings key */
+    id: string;
+    /** Human-readable label for the sidebar ProfileBuilder checkbox */
+    label: string;
+    /** Filename inside media/profile/ */
+    file: string;
+    /** 2–3 critical rules shown inline in the index. Full content lives in the file. */
+    keyRules: string[];
+}
+export declare const PROFILE_SECTIONS: ProfileSection[];
+/** Returns all section IDs in order — useful as the default "all enabled" value. */
+export declare const ALL_SECTION_IDS: string[];
+/**
+ * Assemble AGENT_PROFILE.md as a compact **index**:
+ * - Each enabled section shows its key rules inline (immediate context).
+ * - A `@.autodev/profile/<file>` line lets agents load the full section on demand.
+ * - Full section files are copied to `<root>/.autodev/profile/` so the `@`
+ *   references resolve inside the workspace.
+ * - Custom `@path` references are appended at the end.
+ *
+ * @param enabledIds    Section IDs to include. Empty = all sections.
+ * @param root          Workspace root. Required to deploy section files.
+ * @param customRefs    Additional `@path` lines to append (from user settings).
+ */
+export declare function assembleProfileBody(enabledIds: string[] | undefined, root: string, customRefs?: string[]): {
+    body: string;
+    sectionPaths: string[];
+};

package/out/profileBuilder.js

@@ -0,0 +1,366 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ALL_SECTION_IDS = exports.PROFILE_SECTIONS = void 0;
+exports.assembleProfileBody = assembleProfileBody;
+const crypto = __importStar(require("crypto"));
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+exports.PROFILE_SECTIONS = [
+    {
+        id: '00-identity', label: 'Identity & Autonomous Mode', file: '00-identity.md',
+        keyRules: [
+            'Fully autonomous — never ask questions or wait for confirmation. Decide and act.',
+            'FIRST ACTION on every task: mark `[ ]` → `[~]` in TODO.md BEFORE anything else.',
+            'Never end the session while `[ ]` or `[~]` tasks remain.',
+        ],
+    },
+    {
+        id: '01-learning', label: 'Session Start Order (SUMMARY.md)', file: '01-learning.md',
+        keyRules: [
+            'Read in order: SOUL.md → AGENTS.md → SUMMARY.md → LESSONS.md → CONTRACTS.md → open issues → KB → TODO.md.',
+            'Update SUMMARY.md whenever you discover non-obvious facts or make architectural decisions.',
+        ],
+    },
+    {
+        id: '02-memory-mcp', label: 'Memory MCP — State Persistence', file: '02-memory-mcp.md',
+        keyRules: [
+            'Query Memory MCP before reading TODO.md — load all project nodes first.',
+            'After every `[x]`: write ≥1 Memory MCP node (what changed, gotcha, convention).',
+        ],
+    },
+    {
+        id: '03-living-docs', label: 'Living Project Docs', file: '03-living-docs.md',
+        keyRules: [
+            'Keep PROJECT.md, LESSONS.md, TROUBLESHOOTING.md, SETUP.md, CHANGELOG.md current every session.',
+            'Every resolved error → TROUBLESHOOTING.md. Every `[x]` → CHANGELOG.md. Every correction → LESSONS.md.',
+        ],
+    },
+    {
+        id: '04-skill-files', label: 'Automatic Skill Development (AGENTS.md)', file: '04-skill-files.md',
+        keyRules: [
+            'AGENTS.md is single source of truth — read it before starting any task.',
+            'Update AGENTS.md (+ sync Copilot file) whenever a convention, pattern, or footgun is confirmed.',
+        ],
+    },
+    {
+        id: '05-skill-creation', label: 'Skill Creation Protocol', file: '05-skill-creation.md',
+        keyRules: [
+            'Create .claude/skills/<slug>/SKILL.md when solution required 3+ failed attempts or agent would repeat mistake.',
+            'Add slug + summary to AGENTS.md `## Project Skills` after creating a skill.',
+        ],
+    },
+    {
+        id: '06-core-rules', label: 'Core Rules & File Placement', file: '06-core-rules.md',
+        keyRules: [
+            'Read every file before touching it. Never assume structure, conventions, or config.',
+            'YOU run tests/lints/builds directly. Subagents only for: implementation (Code), test writing (QA), review (Reviewer).',
+            'Think deeply; context unwieldy → summarise → spawn subagent with clean scope. Never silently degrade.',
+        ],
+    },
+    {
+        id: '07-core-loop', label: 'Core Loop & Task Classification', file: '07-core-loop.md',
+        keyRules: [
+            'Loop: MARK [~] → PLAN → DISPATCH → VERIFY → MARK [x] → commit → next task.',
+            'Re-read TODO.md after every [x]; never end while [ ] or [~] remain. Full loop: skill `autodev-core-loop`.',
+        ],
+    },
+    {
+        id: '08-thinking', label: 'Thinking, Decomposition & Validation', file: '08-thinking.md',
+        keyRules: [
+            'Answer 6 questions before dispatching: Scope, Impact, Patterns, Risks, Approach, Done criteria.',
+            'Validation panel (Simplicity · Assumption · User · Priority) must run before every [x].',
+        ],
+    },
+    {
+        id: '09-parallel-panel', label: 'Parallel Specialist Panel (§2)', file: '09-parallel-panel.md',
+        keyRules: [
+            'Five specialists: Architect (design) → Coder (edit files) → Reviewer (review) → Tester (write tests) → Ops.',
+            'Orchestrator runs tests/lints/builds directly after Coder finishes — NOT through subagent.',
+            'BLOCKER from Reviewer or Tester failure → back to Coder → re-run both gates.',
+        ],
+    },
+    {
+        id: '10-codebase-verification', label: 'Codebase Orientation & Verification', file: '10-codebase-verification.md',
+        keyRules: [
+            'Orient before dispatching: entry point, browser UI?, test runner, core modules, config.',
+            'Verify: local tests + lint/build + browser (if UI) + browser test suite + security scan before every commit.',
+        ],
+    },
+    {
+        id: '11-git-debug-security', label: 'Git, Debugging & Security', file: '11-git-debug-security.md',
+        keyRules: [
+            'Conventional commits. One logical change per commit. Commit only after Verifier passes.',
+            'Debug: read full error → locate → context → trace → hypothesis → re-dispatch → re-verify.',
+        ],
+    },
+    {
+        id: '12-todo-format', label: 'TODO.md Format & Marking Rules', file: '12-todo-format.md',
+        keyRules: [
+            '`[ ]` pending · `[~]` in-progress · `[x] YYYY-MM-DD` done (two spaces after date, lowercase x).',
+            'Non-trivial task → add checkable subtask list; final subtask is always verification.',
+        ],
+    },
+    {
+        id: '13-workflow-principles', label: 'Workflow, Quality & Principles', file: '13-workflow-principles.md',
+        keyRules: [
+            'Quality: no magic values, explicit types, single responsibility, fail loudly, surgical changes, simplicity first.',
+            'Principles: Plan before code · Read first always · Subagents are leverage · Own the outcome.',
+        ],
+    },
+    {
+        id: '14-contracts', label: 'Agent Contracts (CONTRACTS.md)', file: '14-contracts.md',
+        keyRules: [
+            'Email is the primary agent-to-agent medium. Jira comments do NOT notify agents — email is mandatory.',
+            'Never invent or guess an address. Read CONTRACTS.md before any contact. Full skeleton: skill `contracts`.',
+        ],
+    },
+    {
+        id: '15-soul', label: 'Soul Protocol — Agent Identity', file: '15-soul.md',
+        keyRules: [
+            'Read SOUL.md first — before SUMMARY.md, before everything. It holds your name, addresses, history.',
+            'Append Communication History after every message. Never invent addresses.',
+        ],
+    },
+    {
+        id: '16-journal', label: 'Research Journal & Auto-Learn Loop', file: '16-journal.md',
+        keyRules: [
+            'Research loop: HYPOTHESIS → IMPLEMENT → VERIFY → LOG → KEEP/DISCARD → REPEAT.',
+            'Write a row before/after any task that modifies 2+ files or involves a non-obvious fix.',
+        ],
+    },
+    {
+        id: '17-issue-tracking', label: 'Issue Tracking (.autodev/issues/)', file: '17-issue-tracking.md',
+        keyRules: [
+            'Create .autodev/issues/ISSUE-NNN-kebab-title.md before doing any work on an issue.',
+            'Append Work Log + attach artifacts on every session touching the issue. Resolved needs 1+ artifact.',
+        ],
+    },
+    {
+        id: '18-knowledgebase', label: 'Knowledge Base (.autodev/knowledgebase/)', file: '18-knowledgebase.md',
+        keyRules: [
+            'Create KB-NNN-kebab-title.md the moment an architectural decision, pattern, or gotcha is confirmed.',
+            'Never delete KB entries — deprecate with Status: Deprecated + Superseded by link.',
+        ],
+    },
+    {
+        id: '19-subagent-context-management', label: 'Subagent Context Management', file: '19-subagent-context-management.md',
+        keyRules: [
+            'Create CONTEXT.md for complex multi-step tasks to prevent losing track of main goal during deep work.',
+            'Subagents NEVER for: running tests/lints/builds, reading files, deciding what to do, or "compacting YOUR context".',
+            'Before spawning subagent: decide approach, write detailed brief (mission, context, files, patterns, done criteria).',
+        ],
+    },
+];
+/** Returns all section IDs in order — useful as the default "all enabled" value. */
+exports.ALL_SECTION_IDS = exports.PROFILE_SECTIONS.map(s => s.id);
+// ---------------------------------------------------------------------------
+// Helpers
+// ---------------------------------------------------------------------------
+function profileMediaDir() {
+    return path.join(__dirname, '..', 'media', 'profile');
+}
+function md5(content) {
+    return crypto.createHash('md5').update(content).digest('hex');
+}
+/**
+ * Copy a section file from `media/profile/` to `<root>/.autodev/profile/`
+ * so it is accessible via `@.autodev/profile/<file>` references inside the
+ * workspace. Returns the workspace-relative `@` path, or null on failure.
+ */
+function deploySectionFile(section, root) {
+    const src = path.join(profileMediaDir(), section.file);
+    if (!fs.existsSync(src)) {
+        return null;
+    }
+    const destDir = path.join(root, '.autodev', 'profile');
+    if (!fs.existsSync(destDir)) {
+        fs.mkdirSync(destDir, { recursive: true });
+    }
+    const dest = path.join(destDir, section.file);
+    try {
+        fs.copyFileSync(src, dest);
+        return `.autodev/profile/${section.file}`;
+    }
+    catch {
+        return null;
+    }
+}
+// ---------------------------------------------------------------------------
+// Profile assembly — index format
+// ---------------------------------------------------------------------------
+/**
+ * Assemble AGENT_PROFILE.md as a compact **index**:
+ * - Each enabled section shows its key rules inline (immediate context).
+ * - A `@.autodev/profile/<file>` line lets agents load the full section on demand.
+ * - Full section files are copied to `<root>/.autodev/profile/` so the `@`
+ *   references resolve inside the workspace.
+ * - Custom `@path` references are appended at the end.
+ *
+ * @param enabledIds    Section IDs to include. Empty = all sections.
+ * @param root          Workspace root. Required to deploy section files.
+ * @param customRefs    Additional `@path` lines to append (from user settings).
+ */
+function assembleProfileBody(enabledIds, root, customRefs = []) {
+    const ids = enabledIds && enabledIds.length > 0 ? enabledIds : exports.ALL_SECTION_IDS;
+    const orderedSections = exports.PROFILE_SECTIONS.filter(s => ids.includes(s.id));
+    const header = [
+        '# AutoDev Agent Profile',
+        '',
+        '> This is a **protocol index**. Each section file is loaded directly by the agent.',
+        '> Key rules are summarised below; full details live in the per-section files.',
+        '',
+        '---',
+        '',
+    ].join('\n');
+    const parts = [];
+    const sectionPaths = [];
+    for (const section of orderedSections) {
+        const refPath = deploySectionFile(section, root);
+        if (refPath) {
+            sectionPaths.push(refPath);
+        }
+        const rulesLines = section.keyRules.map(r => `- ${r}`).join('\n');
+        // Hash over key rules + ref so the marker changes if either is updated
+        const hash = md5(rulesLines + (refPath ?? ''));
+        const block = [
+            `<!-- AUTODEV:section:${section.id}:begin:md5=${hash} -->`,
+            `### ${section.label}`,
+            rulesLines,
+            `<!-- AUTODEV:section:${section.id}:end -->`,
+        ].join('\n');
+        parts.push(block);
+    }
+    let body = header + parts.join('\n\n') + '\n';
+    // Append custom references
+    const validCustom = customRefs.map(r => r.trim()).filter(r => r.length > 0);
+    if (validCustom.length > 0) {
+        body += '\n---\n\n## Custom References\n\n';
+        body += validCustom.map(r => {
+            // Remove @ prefix if present
+            const cleanPath = r.startsWith('@') ? r.substring(1) : r;
+            // Use a relative file:// path so the reference survives workspace moves.
+            const relPath = path.isAbsolute(cleanPath)
+                ? path.relative(root, cleanPath).replace(/\\/g, '/')
+                : cleanPath.replace(/\\/g, '/');
+            return `file://./${relPath}`;
+        }).join('\n');
+        body += '\n';
+    }
+    // Always append SOUL.md reference so agents load their identity anchor first.
+    body += [
+        '',
+        '---',
+        '',
+        '## Agent Identity Anchor',
+        '',
+        `file://./SOUL.md`,
+        '<think>',
+        'IMPORTANT: Read SOUL.md before processing any incoming message.',
+        'It contains your name, your contact addresses, and your full communication history.',
+        'When a message arrives, check ## Communication History to recognise the thread.',
+        'Never act confused about who you are — your identity is stable across all sessions.',
+        'If SOUL.md does not exist yet, create it from the skeleton in §0.0.',
+        '</think>',
+        '',
+    ].join('\n');
+    // Always append JOURNAL.md reference so agents write and read the research log.
+    body += [
+        '',
+        '---',
+        '',
+        '## Research Journal',
+        '',
+        `file://./JOURNAL.md`,
+        '<think>',
+        'IMPORTANT: Before every non-trivial task, write a hypothesis row in JOURNAL.md (status: pending).',
+        'After the task: update the row to keep or discard. Apply the simplicity criterion.',
+        'Commit JOURNAL.md together with the code change. Never delete rows — discards are valuable data.',
+        'If JOURNAL.md does not exist yet, create it from the skeleton in §0.6.',
+        '</think>',
+        '',
+    ].join('\n');
+    // Always append a direct reference to CONTRACTS.md so agents auto-load
+    // the project's contact directory regardless of which sections are enabled.
+    body += [
+        '',
+        '---',
+        '',
+        '## Project Contact Directory',
+        '',
+        `file://./CONTRACTS.md`,
+        '<think>',
+        'IMPORTANT: Read CONTRACTS.md before sending any email, message, or task to another agent.',
+        'It lists every human and agent contact address, per-channel routing rules, and the escalation',
+        'thresholds that must be met before contacting the human.',
+        'Never invent or guess a contact address — if it is not in CONTRACTS.md, do not send.',
+        '</think>',
+        '',
+    ].join('\n');
+    // Always append issue tracking and knowledge base anchors.
+    body += [
+        '',
+        '---',
+        '',
+        '## Open Issues',
+        '',
+        `file://./.autodev/issues/`,
+        '<think>',
+        'IMPORTANT: At session start, scan .autodev/issues/ for ISSUE-*.md files whose Status is not Resolved or Closed.',
+        'Re-read each open issue file before starting work so context is fully loaded.',
+        'When assigned a ticket or bug, create .autodev/issues/ISSUE-NNN-kebab-title.md immediately — before any code or email.',
+        'If .autodev/issues/ does not exist yet, create it and the first issue file from the skeleton in §0.7.',
+        '</think>',
+        '',
+    ].join('\n');
+    body += [
+        '',
+        '---',
+        '',
+        '## Knowledge Base',
+        '',
+        `file://./.autodev/knowledgebase/`,
+        '<think>',
+        'IMPORTANT: Before starting any non-trivial task, scan .autodev/knowledgebase/ for KB entries relevant to that task.',
+        'When a session produces a reusable insight (architectural decision, pattern, gotcha, confirmed API behaviour),',
+        'create .autodev/knowledgebase/KB-NNN-kebab-title.md immediately — do not wait until the end of the session.',
+        'Cross-reference KB entries and issue files bidirectionally. Never delete KB entries — deprecate with a forward link.',
+        'If .autodev/knowledgebase/ does not exist yet, create it and the first KB entry from the skeleton in §0.8.',
+        '</think>',
+        '',
+    ].join('\n');
+    return { body, sectionPaths };
+}
+//# sourceMappingURL=profileBuilder.js.map

package/out/profileBuilder.js.map

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