audit-tools 0.52.3 → 0.52.5

package/dist/audit/cli/nextStepHelpers.d.ts

@@ -1,10 +1,4 @@
-/**
- * Extracted helpers for the next-step command.
- *
- * Splitting these out of nextStepCommand.ts reduces that file to just the
- * top-level cmdNextStep dispatcher, keeping each module focused on a single
- * concern.
- */
+import { type CurrentReviewInputRevision } from "./reviewSubmission.js";
 import { type ObligationDef } from "audit-tools/shared";
 import type { AnalyzerSetting, GraphEdge } from "audit-tools/shared";
 import { type ArtifactBundle } from "../io/artifacts.js";
@@ -41,6 +35,7 @@ export type SubmissionConsumeAttempt<T> = {
     status: "malformed";
     path: string;
     reason: string;
+    issueCode?: "submission_malformed" | "submission_contract_invalid";
 };
 /**
  * Read a lane's submission from the TOOL-COMPUTED path its emission bound —
@@ -56,7 +51,7 @@ export type SubmissionConsumeAttempt<T> = {
  * direct unlink) schedules its commit-time deletion. Without a transaction the
  * read is a pure probe of the bound path — nothing moves.
  */
-export declare function tryConsumeSubmission<T>(artifactsDir: string, lane: string, tx?: FoldTransaction): Promise<SubmissionConsumeAttempt<T>>;
+export declare function tryConsumeSubmission<T>(artifactsDir: string, lane: string, tx?: FoldTransaction, currentInputRevision?: CurrentReviewInputRevision): Promise<SubmissionConsumeAttempt<T>>;
 export type NextStepParams = {
     root: string;
     artifactsDir: string;
@@ -71,6 +66,10 @@ export type NextStepParams = {
      * acquisition executor stays a hermetic empty-marker no-op.
      */
     externalAcquisition?: ExternalAcquisitionAdvanceOptions;
+    autoFix?: {
+        enabled?: boolean;
+        dryRun?: boolean;
+    };
     since?: string;
     /**
      * The FOLD's git-index probe cache (see `ScopeIndexMemo`), created once by
@@ -269,20 +268,6 @@ type AnalyzerConsentBranchResult = {
 } | {
     action: "fallthrough";
 };
-/**
- * Item B (consent surfacing) — the acquisition obligation's fold branch,
- * mirroring the analyzer-install consent fold exactly:
- *   - nothing pending (acquisition off / this run's scoped grant covers every
- *     applicable candidate / all decided) → run the deterministic acquisition
- *     executor (`fallthrough`);
- *   - a decisions submission arrived on the `analyzer_consent` lane
- *     (`{ "<id>": "granted" | "declined" }`) → persist the decisions into
- *     session config (decisions durable, tokens never), fold them into the
- *     in-flight acquisition options, and re-scan (`continue`);
- *   - otherwise → emit the ONE batched operator-interactive offer step
- *     (`return`), so applicable consent-gated candidates are never silently
- *     skipped (the silent-fail-closed defect this program exists to fix).
- */
 export declare function handleAnalyzerConsentBranch(params: Pick<NextStepParams, "root" | "artifactsDir" | "externalAcquisition">, bundle: ArtifactBundle, state: AuditState, analyzersRef: {
     value: Record<string, AnalyzerSetting> | undefined;
 }, tx: FoldTransaction): Promise<AnalyzerConsentBranchResult>;
@@ -407,7 +392,7 @@ type ConsumeArraySubmissionResult<T> = {
  * it has applied the value, so a submission is never destroyed before its
  * content has landed somewhere else.
  */
-export declare function consumeArraySubmission<T>(artifactsDir: string, lane: string, tx?: FoldTransaction, itemSchema?: ZodTypeAny): Promise<ConsumeArraySubmissionResult<T>>;
+export declare function consumeArraySubmission<T>(artifactsDir: string, lane: string, tx?: FoldTransaction, itemSchema?: ZodTypeAny, currentInputRevision?: CurrentReviewInputRevision): Promise<ConsumeArraySubmissionResult<T>>;
 type ConsumeObjectSubmissionResult = {
     status: "absent";
 } | {
@@ -429,7 +414,7 @@ type ConsumeObjectSubmissionResult = {
  * caller unlinks after applying, so a crash mid-apply retains the submission
  * for the retry.
  */
-export declare function consumeObjectSubmission(artifactsDir: string, lane: string, tx?: FoldTransaction): Promise<ConsumeObjectSubmissionResult>;
+export declare function consumeObjectSubmission(artifactsDir: string, lane: string, tx?: FoldTransaction, currentInputRevision?: CurrentReviewInputRevision): Promise<ConsumeObjectSubmissionResult>;
 /**
  * Render the host-facing notice for a pending quarantined edge-reasoning
  * submission, naming the quarantined file and the shape error — so the
@@ -582,7 +567,7 @@ export declare function handleSystemicChallengeBranch(params: Pick<NextStepParam
  * on `failureRef` so the fold's commit-on-throw persists it without a second
  * lock acquisition (the deleted O2 RMW).
  */
-export declare function executeAndRecord(params: Pick<NextStepParams, "root" | "artifactsDir" | "graphLlmEdgeReasoning" | "externalAcquisition" | "since" | "scopeIndexMemo">, analyzers: Record<string, AnalyzerSetting> | undefined, decision: ReturnType<typeof decideNextStep>, index: number, lastSummary: string, bundle: ArtifactBundle, ctx: {
+export declare function executeAndRecord(params: Pick<NextStepParams, "root" | "artifactsDir" | "graphLlmEdgeReasoning" | "externalAcquisition" | "autoFix" | "since" | "scopeIndexMemo">, analyzers: Record<string, AnalyzerSetting> | undefined, decision: ReturnType<typeof decideNextStep>, index: number, lastSummary: string, bundle: ArtifactBundle, ctx: {
     manifestIndexCache: WeakMap<object, {
         lineIndex?: Record<string, number>;
         sizeIndex?: Record<string, number>;

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package/dist/audit/cli/nextStepHelpers.js

@@ -1,3 +1,5 @@
+import { designReviewInputRevision } from "../orchestrator/designReviewProjection.js";
+import { decodeAuditReviewSubmission, readAuditReviewSubmission, currentAuditReviewInputRevision, auditLaneReviewRequirement } from "./reviewSubmission.js";
 // sites-pinned: tests/audit/next-step-helpers.test.ts, tests/audit/charter-emit-order.test.ts, tests/audit/executor-registry-sync.test.ts, tests/audit/pipeline-integration.test.ts
 /**
  * Extracted helpers for the next-step command.
@@ -6,10 +8,10 @@
  * top-level cmdNextStep dispatcher, keeping each module focused on a single
  * concern.
  */
-import { randomUUID } from "node:crypto";
+import { AnalyzerRunConsentDecisionSchema, readRunConsentUnlocked, updateRunConsentUnlocked } from "../../shared/analyzerRunConsent.js";
 import { mkdir, readFile, unlink } from "node:fs/promises";
 import { join, relative } from "node:path";
-import { advance, describeStoppedFold, RunLogger, compareCodeUnits, hashContent, isFileMissingError, isJsonParseError, isRecord, readJsonFile, readSubmissionIngestHistory, readTrailingSubmissionRefusals, persistAnalyzerConsent, persistAnalyzerSettings, writeJsonFile, } from "audit-tools/shared";
+import { advance, ANALYZER_SETTINGS, describeStoppedFold, RunLogger, hashContent, isFileMissingError, isJsonParseError, isRecord, readJsonFile, readSubmissionIngestHistory, readTrailingSubmissionRefusals, persistAnalyzerSettings, writeJsonFile, } from "audit-tools/shared";
 import { loadArtifactBundle, promoteFinalAuditReport, } from "../io/artifacts.js";
 import { auditReportPath, groundDesignFindings, repoPathUniverse, systemicChallengeSchema, laneAssetsDir, promotedAuditReportPath, } from "audit-tools/shared";
 import { charterExtractionKindsForCeiling } from "./charterExtractionPrompt.js";
@@ -29,7 +31,8 @@ import { deriveObligationState } from "../orchestrator/obligationDerive.js";
 import { deriveAuditState } from "../orchestrator/state.js";
 import { checkFileIntegrity } from "../orchestrator/fileIntegrity.js";
 import { graphEnrichmentUnresolvedAnalyzers, graphEnrichmentLowConfidenceEdges, pendingAnalyzerConsent, } from "../orchestrator/hostInputPause.js";
-import { runAuditStepUnlocked, withArtifactTreeHold } from "./auditStep.js";
+import { runAuditStepUnlocked } from "./auditStep.js";
+import { withArtifactTreeHold } from "../../shared/io/artifactTreeHold.js";
 import { writeHandoffOnly, ensureSemanticReviewRunUnlocked, loadCurrentActiveReviewRun, } from "./reviewRun.js";
 import { sizeIndexFromManifest } from "../orchestrator/reviewPackets.js";
 import { buildPendingAuditTasks } from "./dispatch/packetFilter.js";
@@ -52,15 +55,17 @@ import { recordHostResultOutcomes, renderIngestReportLines } from "audit-tools/s
  * direct unlink) schedules its commit-time deletion. Without a transaction the
  * read is a pure probe of the bound path — nothing moves.
  */
-export async function tryConsumeSubmission(artifactsDir, lane, tx) {
+export async function tryConsumeSubmission(artifactsDir, lane, tx, currentInputRevision) {
     if (tx) {
         const stagedResult = await stageLaneSubmission(tx, artifactsDir, lane);
         if (stagedResult.status === "absent")
             return { status: "absent" };
         const { stagingPath, contentHash } = stagedResult.staged;
         try {
-            const value = await readJsonFile(stagingPath);
-            return { status: "ok", value, path: stagingPath, contentHash };
+            const decoded = await decodeAuditReviewSubmission(artifactsDir, lane, await readJsonFile(stagingPath), currentInputRevision);
+            if (!decoded.ok)
+                return { status: "malformed", path: stagingPath, reason: decoded.issue, issueCode: "submission_contract_invalid" };
+            return { status: "ok", value: decoded.result, path: stagingPath, contentHash };
         }
         catch (error) {
             if (isJsonParseError(error)) {
@@ -71,8 +76,10 @@ export async function tryConsumeSubmission(artifactsDir, lane, tx) {
     }
     const filePath = laneSubmissionPath(artifactsDir, lane);
     try {
-        const value = await readJsonFile(filePath);
-        return { status: "ok", value, path: filePath };
+        const decoded = await decodeAuditReviewSubmission(artifactsDir, lane, await readJsonFile(filePath), currentInputRevision);
+        if (!decoded.ok)
+            return { status: "malformed", path: filePath, reason: decoded.issue, issueCode: "submission_contract_invalid" };
+        return { status: "ok", value: decoded.result, path: filePath };
     }
     catch (error) {
         if (isFileMissingError(error))
@@ -226,6 +233,13 @@ export async function buildTerminalStep(params, bundle, state, blockedReason) {
  *     (`return`), so applicable consent-gated candidates are never silently
  *     skipped (the silent-fail-closed defect this program exists to fix).
  */
+function applyRunConsent(options, consent) {
+    options.analyzerConsent = {
+        ...Object.fromEntries(Object.entries(consent.decisions).filter(([, value]) => value === "declined").map(([id]) => [id, "declined"])),
+    };
+    const granted = Object.entries(consent.decisions).filter(([, value]) => value === "granted").map(([id]) => id);
+    options.consentToken = granted.length ? { value: consent.run_id, tools: granted } : undefined;
+}
 export async function handleAnalyzerConsentBranch(params, bundle, state, analyzersRef, tx) {
     const pending = pendingAnalyzerConsent({
         root: params.root,
@@ -244,41 +258,11 @@ export async function handleAnalyzerConsentBranch(params, bundle, state, analyze
         return { action: "continue" };
     }
     if (incoming.status === "ok") {
-        // The operator answers grants and declines on ONE lane, but the two have
-        // different lifetimes and the split is enforced here rather than trusted.
-        // A DECLINE is durable: it vetoes every later spawn of that tool. A GRANT
-        // binds only the run that asked (owner directive, 2026-08-21) — a durable
-        // grant keeps granting itself to runs whose operator never saw the offer,
-        // which for a network-egress analyzer turns one consent into standing
-        // consent. Grants therefore ride the per-run consent TOKEN, the channel the
-        // strict policy schema cannot hold.
-        const declined = {};
-        const granted = [];
-        for (const [id, decision] of Object.entries(incoming.values)) {
-            if (decision === "declined")
-                declined[id] = "declined";
-            else
-                granted.push(id);
-        }
-        await persistAnalyzerConsent(params.root, declined);
-        if (params.externalAcquisition) {
-            params.externalAcquisition.analyzerConsent = {
-                ...(params.externalAcquisition.analyzerConsent ?? {}),
-                ...declined,
-            };
-            if (granted.length > 0) {
-                const existing = params.externalAcquisition.consentToken;
-                params.externalAcquisition.consentToken = {
-                    value: existing?.value ?? randomUUID(),
-                    // Scoped, never run-wide: the grant names exactly the ids the
-                    // operator was offered and answered.
-                    tools: [...new Set([...(existing?.tools ?? []), ...granted])].sort(compareCodeUnits),
-                };
-            }
-        }
-        // Deletion + the accepted ledger event are COMMIT-phase (the consent
-        // persist above is durable-by-design and idempotent, so a crash-replay
-        // re-applies it harmlessly while the staged file is restored).
+        // Both answers survive process boundaries only within this working audit.
+        // The artifact-tree lock covers this write and staged-submission replay.
+        const consent = await updateRunConsentUnlocked(params.root, params.artifactsDir, incoming.values);
+        if (params.externalAcquisition)
+            applyRunConsent(params.externalAcquisition, consent);
         markSubmissionApplied(tx, incoming.path, incoming.ignored.length > 0
             ? describeIgnoredKeys(incoming.ignored, ANALYZER_CONSENT_VALUES)
             : undefined);
@@ -345,7 +329,7 @@ export async function handleGraphEnrichmentBranch(params, bundle, state, analyze
                 });
                 await recordLaneOutcome(params.artifactsDir, GATE_LANES.edge_reasoning, {
                     kind: "rejected",
-                    issueCode: "submission_malformed",
+                    issueCode: edgeReasoningIncoming.issueCode ?? "submission_malformed",
                     message: edgeReasoningIncoming.reason + quarantineSurvivalNote(quarantine),
                 });
                 return { action: "continue", bundle };
@@ -419,7 +403,7 @@ export async function handleGraphEnrichmentBranch(params, bundle, state, analyze
 /** Whether a completed design-review pass has gone stale vs. its snapshot. */
 function passIsStale(bundle, pass) {
     const snapshot = bundle.design_review_snapshots?.[pass];
-    return snapshot ? isDesignReviewStale(snapshot, bundle) : false;
+    return !snapshot || isDesignReviewStale(snapshot, bundle);
 }
 // `quarantineSubmissionFile` moved to `foldTransaction.ts` (the staging/commit
 // module owns submission-file lifecycle mechanics); imported above.
@@ -497,15 +481,15 @@ async function quarantineMisshapedSubmission(artifactsDir, filePath, lane, error
  * it has applied the value, so a submission is never destroyed before its
  * content has landed somewhere else.
  */
-export async function consumeArraySubmission(artifactsDir, lane, tx, itemSchema) {
-    const incoming = await tryConsumeSubmission(artifactsDir, lane, tx);
+export async function consumeArraySubmission(artifactsDir, lane, tx, itemSchema, currentInputRevision) {
+    const incoming = await tryConsumeSubmission(artifactsDir, lane, tx, currentInputRevision);
     if (incoming.status === "absent")
         return { status: "absent" };
     if (incoming.status === "malformed") {
         const quarantine = await quarantineSubmissionFile(artifactsDir, incoming.path, lane);
         await recordLaneOutcome(artifactsDir, lane, {
             kind: "rejected",
-            issueCode: "submission_malformed",
+            issueCode: incoming.issueCode ?? "submission_malformed",
             message: incoming.reason + quarantineSurvivalNote(quarantine),
         });
         return {
@@ -569,8 +553,8 @@ export async function consumeArraySubmission(artifactsDir, lane, tx, itemSchema)
  * caller unlinks after applying, so a crash mid-apply retains the submission
  * for the retry.
  */
-export async function consumeObjectSubmission(artifactsDir, lane, tx) {
-    const incoming = await tryConsumeSubmission(artifactsDir, lane, tx);
+export async function consumeObjectSubmission(artifactsDir, lane, tx, currentInputRevision) {
+    const incoming = await tryConsumeSubmission(artifactsDir, lane, tx, currentInputRevision);
     if (incoming.status === "absent")
         return { status: "absent" };
     if (incoming.status === "malformed") {
@@ -580,7 +564,7 @@ export async function consumeObjectSubmission(artifactsDir, lane, tx) {
             `Fix the JSON and resubmit.\n`);
         await recordLaneOutcome(artifactsDir, lane, {
             kind: "rejected",
-            issueCode: "submission_malformed",
+            issueCode: incoming.issueCode ?? "submission_malformed",
             message: incoming.reason + quarantineSurvivalNote(quarantine),
         });
         return {
@@ -615,11 +599,11 @@ export async function consumeObjectSubmission(artifactsDir, lane, tx) {
  * files to validate and makes stale round output fail closed. Without a
  * manifest this remains the shallow findings-array contract.
  */
-async function consumeConceptualSubmission(artifactsDir, tx) {
+async function consumeConceptualSubmission(artifactsDir, tx, currentInputRevision) {
     const lane = GATE_LANES.design_review_conceptual;
     const manifest = await readConceptualReviewRoundManifest(artifactsDir);
     if (!manifest) {
-        const result = await consumeArraySubmission(artifactsDir, lane, tx, SubmittedDesignFindingSchema);
+        const result = await consumeArraySubmission(artifactsDir, lane, tx, SubmittedDesignFindingSchema, currentInputRevision);
         return result.status === "ok"
             ? { status: "ok", findings: result.value, path: result.path }
             : result;
@@ -632,7 +616,7 @@ async function consumeConceptualSubmission(artifactsDir, tx) {
             throw new Error(`conceptual perspective path does not match its bound lane path: ${perspective.result_path}`);
         }
     }
-    const incoming = await consumeObjectSubmission(artifactsDir, lane, tx);
+    const incoming = await consumeObjectSubmission(artifactsDir, lane, tx, currentInputRevision);
     if (incoming.status === "absent")
         return incoming;
     if (incoming.status === "quarantined") {
@@ -667,7 +651,7 @@ async function consumeConceptualSubmission(artifactsDir, tx) {
     }
     let perspectiveFindings;
     try {
-        perspectiveFindings = await loadConceptualPerspectiveFindings(manifest);
+        perspectiveFindings = await loadConceptualPerspectiveFindings(manifest, (path, lane) => readAuditReviewSubmission(path, artifactsDir, lane, currentInputRevision));
     }
     catch (error) {
         // Only invalid bytes are quarantinable. IO errors propagate so valid
@@ -726,14 +710,8 @@ async function consumeConceptualSubmission(artifactsDir, tx) {
     }
 }
 /** The two decision vocabularies the operator-facing analyzer gates accept. */
-const ANALYZER_CONSENT_VALUES = ["granted", "declined"];
-const ANALYZER_SETTING_VALUES = [
-    "ephemeral",
-    "permanent",
-    "skip",
-    "repo",
-    "auto",
-];
+const ANALYZER_CONSENT_VALUES = AnalyzerRunConsentDecisionSchema.options;
+const ANALYZER_SETTING_VALUES = ANALYZER_SETTINGS;
 /** Name the keys that carried no recognized value, for the ledger event. */
 function describeIgnoredKeys(ignored, allowed) {
     return (`ignored ${ignored.length} unrecognized entr${ignored.length === 1 ? "y" : "ies"} ` +
@@ -973,8 +951,9 @@ export async function handleDesignReviewBranch(params, bundle, state, tx) {
     // translated from the old lane. See the invalidation at load —
     // `designReviewPassState` in `orchestrator/state.ts`, which reads only the two
     // modern per-pass flags and never the retired combined one.
-    const contractResult = await consumeArraySubmission(params.artifactsDir, GATE_LANES.design_review_contract, tx, SubmittedDesignFindingSchema);
-    const conceptualResult = await consumeConceptualSubmission(params.artifactsDir, tx);
+    const currentReviewInputRevision = designReviewInputRevision(bundle);
+    const contractResult = await consumeArraySubmission(params.artifactsDir, GATE_LANES.design_review_contract, tx, SubmittedDesignFindingSchema, currentReviewInputRevision);
+    const conceptualResult = await consumeConceptualSubmission(params.artifactsDir, tx, designReviewInputRevision(bundle, "conceptual"));
     if (contractResult.status === "quarantined") {
         assessment =
             withRejectedDesignReviewSubmission(assessment, "contract", contractResult) ??
@@ -1070,7 +1049,7 @@ export async function handleDesignReviewBranch(params, bundle, state, tx) {
  * above for the two gates that deviate and are not run through this engine.
  */
 async function runOmittableGate(descriptor, params, bundle, state, tx) {
-    const incoming = await tryConsumeSubmission(params.artifactsDir, descriptor.lane, tx);
+    const incoming = await tryConsumeSubmission(params.artifactsDir, descriptor.lane, tx, auditLaneReviewRequirement(descriptor.lane) === "ordinary" ? undefined : () => currentAuditReviewInputRevision(params.root, bundle, descriptor.lane));
     if (incoming.status === "malformed") {
         // Not-JSON submission: same quarantine-loudly lifecycle as a mis-shaped one.
         await quarantineMisshapedSubmission(params.artifactsDir, incoming.path, descriptor.lane, incoming.reason);
@@ -1228,7 +1207,7 @@ export async function handleCharterExtractionBranch(params, bundle, state, tx) {
         // Staged per lane; an INCOMPLETE set is restored to its bound paths at
         // commit (un-applied), which is exactly the K-of-N resume the design
         // wants — pending lanes survive on disk until every lane is present.
-        const incoming = await tryConsumeSubmission(params.artifactsDir, lane, tx);
+        const incoming = await tryConsumeSubmission(params.artifactsDir, lane, tx, () => currentAuditReviewInputRevision(params.root, bundle, lane));
         if (incoming.status === "absent")
             continue;
         if (incoming.status === "malformed") {
@@ -1453,6 +1432,7 @@ export async function executeAndRecord(params, analyzers, decision, index, lastS
             analyzers,
             graphLlmEdgeReasoning: params.graphLlmEdgeReasoning,
             externalAcquisition: params.externalAcquisition,
+            autoFix: params.autoFix,
             since: params.since,
             lineIndex: indexes.lineIndex,
             sizeIndex: indexes.sizeIndex,
@@ -2383,6 +2363,13 @@ async function runDeterministicFold(params, heartbeat) {
         const holdStartMs = Date.now();
         let chargedExecutions;
         await recoverStagedSubmissions(params.artifactsDir);
+        const previousConsent = await readRunConsentUnlocked(params.root, params.artifactsDir);
+        const consent = params.autoFix?.enabled === undefined && !params.autoFix?.dryRun
+            ? previousConsent
+            : await updateRunConsentUnlocked(params.root, params.artifactsDir, {}, params.autoFix?.enabled, params.autoFix?.dryRun);
+        if (params.externalAcquisition?.enabled)
+            applyRunConsent(params.externalAcquisition, consent);
+        params.autoFix = { enabled: consent.auto_fix, dryRun: consent.dry_run };
         // The PERSISTED carry, read back under the hold. A transition that ENDED
         // an earlier call left its advisories on disk for the next emission to
         // state, and that emission may be this call's — the ctx ref starts empty
@@ -2392,6 +2379,9 @@ async function runDeterministicFold(params, heartbeat) {
         // once-only property is the same one the in-call path already relies on.
         ctx.foldAdvisoriesRef.value = await readPendingAdvisories(params.artifactsDir);
         const startBundle = await loadArtifactBundle(params.artifactsDir);
+        if (consent.auto_fix && !previousConsent.auto_fix && !consent.dry_run) {
+            delete startBundle.auto_fixes_applied;
+        }
         ctx.currentBundleRef.value = startBundle;
         try {
             const engineOutcome = await advance({