audit-tools 0.51.7 → 0.51.9

package/dist/remediate/index.js

@@ -1,3 +1,6 @@
+// sites-pinned: tests/remediate/recover-verb-branches.test.ts
+// (the
+// ACCEPTED-WITH-ISSUES arm — its status token and exit code)
 import { Command } from "commander";
 import { readFileSync } from "node:fs";
 import { join, dirname, resolve } from "node:path";
@@ -9,7 +12,7 @@ import { evaluateContractPipelineCrossGateOutcomes } from "./validation/contract
 import { readRepairState, waivedJudgeAcceptedIds, } from "./contractPipeline/repairState.js";
 import { CP_ARTIFACT_NAMES, isEnvelope, stampToolCreatedAt, readContractArtifact, envelopePayload, } from "./contractPipeline/artifactStore.js";
 import { intakePaths } from "./intake.js";
-import { applyGuidanceFile, assertCliCommandAllowedFromCwd, callerWorkingDirectory, discoverRepoRoot, remediationArtifactsDir, resolveRepoRoot, readOptionalJsonFile, recoverSubmission, runTracked, runWithBlockedStepBackstop, } from "audit-tools/shared";
+import { applyGuidanceFile, assertCliCommandAllowedFromCwd, callerWorkingDirectory, discoverRepoRoot, remediationArtifactsDir, resolveRepoRoot, invalidateStepContracts, readOptionalJsonFile, recoverSubmission, runTracked, runWithBlockedStepBackstop, } from "audit-tools/shared";
 import { writeBlockedStep } from "./steps/stepWriter.js";
 import { remediationSubmissionBinding, } from "./steps/dispatch/hostHandoff.js";
 // src/remediate/index.ts (source) or dist/remediate/index.js (built) → three
@@ -147,37 +150,20 @@ program
     // is paid only on the rare rescue, by an operator at a terminal.
     const root = resolveRootOption(options.root);
     const artifactsDir = resolveArtifactsDirOption(root, options.artifactsDir);
-    const binding = await remediationSubmissionBinding({
-        root,
-        artifactsDir,
-        runId: options.runId,
-        workItemId: options.submissionId,
-    });
-    if (binding === null) {
-        // No contract to check against must never read as "passes".
-        console.error(`No live workload for run '${options.runId}' names work item ` +
-            `'${options.submissionId}'. Recovery refuses a submission it cannot validate.`);
-        process.exit(1);
-    }
-    const outcome = await recoverSubmission({
+    const result = await recoverSubmissionVerb({
         root,
         artifactsDir,
         runId: options.runId,
         submissionId: options.submissionId,
-        fromPath: resolve(options.from),
-        lane: options.submissionId,
-        submissionDir: binding.submissionDir,
-    }, binding.validate);
-    if (!outcome.ok) {
-        console.error(`recover-submission refused the payload for '${options.submissionId}' ` +
-            `(${outcome.issue.code}): ${outcome.issue.message}`);
+        from: resolve(options.from),
+    });
+    if (result.status === "unrunnable") {
+        console.error(result.message);
         process.exit(1);
     }
-    console.log(JSON.stringify({
-        status: "recovered",
-        work_item_id: options.submissionId,
-        submission_path: outcome.submission_path,
-    }, null, 2));
+    console.log(JSON.stringify(result.body, null, 2));
+    if (result.status !== "recovered")
+        process.exit(result.exitCode);
 });
 program
     .command("recover-ingest")
@@ -190,36 +176,19 @@ program
     // lane needs no command (next-step ingests), so the relaxed evidence bar is
     // never reachable by a host that merely calls the normal loop.
     const root = resolveRootOption(options.root);
-    let summary;
-    try {
-        summary = await recoverIngestHostResults({
-            root,
-            artifactsDir: resolveArtifactsDirOption(root, options.artifactsDir),
-            runId: options.runId,
-        });
-    }
-    catch (error) {
+    const result = await recoverIngestVerb({
+        root,
+        artifactsDir: resolveArtifactsDirOption(root, options.artifactsDir),
+        runId: options.runId,
+    });
+    if (result.status === "unrunnable") {
         // An operator at a terminal gets the reason, not a stack trace.
-        console.error(`recover-ingest could not run: ${error instanceof Error ? error.message : String(error)}`);
+        console.error(`recover-ingest could not run: ${result.message}`);
         process.exit(1);
     }
-    // A run that recovered NOTHING is not a recovery. Saying "recovered" and
-    // exiting 0 over an empty accept set is the one outcome an operator could
-    // mistake for success, so it gets its own status and a non-zero exit — as
-    // does any partial run, since an operator who asked for N items back must
-    // not read a partial ingest as a complete one. The body names what landed.
-    const recoveredNothing = summary.accepted_count === 0 &&
-        summary.completed_work_item_ids.length === 0;
-    console.log(JSON.stringify({
-        status: recoveredNothing ? "nothing-to-recover" : "recovered",
-        run_id: options.runId,
-        accepted_count: summary.accepted_count,
-        completed_work_item_ids: summary.completed_work_item_ids,
-        pending_work_item_ids: summary.pending_work_item_ids,
-        issues: summary.issues,
-    }, null, 2));
-    if (recoveredNothing || summary.issues.length > 0)
-        process.exit(1);
+    console.log(JSON.stringify(result.body, null, 2));
+    if (result.status !== "recovered")
+        process.exit(result.exitCode);
 });
 program
     .command("validate-artifacts")
@@ -466,6 +435,146 @@ export function resolveArtifactsDirOption(root, artifactsDir) {
         ? remediationArtifactsDir(root)
         : resolve(artifactsDir);
 }
+/**
+ * `recover-ingest`'s whole decision, minus argv parsing and printing.
+ *
+ * Exit code, not prose, is what an operator scripts on — so the three outcomes
+ * are told apart mechanically, in this precedence:
+ *
+ *   75 the EXPECTED-PENDING outcome, tested FIRST: every issue is
+ *      `submission_missing`, i.e. the run is waiting on results the host simply
+ *      has not written yet. No operator action is implied, so this must not read
+ *      as a fault — not even when a sibling item was accepted in the same pass,
+ *      because the issues are what an operator acts on and none of them asks for
+ *      anything. (`accepted_count` in the body still reports the acceptance.)
+ *   2  ACCEPTED-WITH-ISSUES: something was accepted AND something was really
+ *      refused. Tested before the clean arm, because the clean arm's condition
+ *      ("something was accepted") is a strict superset: without this arm a
+ *      partial recovery reports the same status token as a complete one, and a
+ *      caller scripting on the token cannot see the refusal at all.
+ *   0  otherwise, everything the pass saw was accepted
+ *   1  otherwise (nothing accepted, and not every issue is expected-pending): a
+ *      run that recovered NOTHING is not a recovery, and any REAL issue — a
+ *      partial ingest, a moved tree, a refused payload — is a failure.
+ *
+ * The pending arm is the distinction the entry asks for: "the host hasn't
+ * finished" must not read identically to "the run is wedged", or an operator's
+ * retry loop cannot tell a normal wait from a real fault. `submission_missing`
+ * is the ONLY issue code that means expected-pending — every other code
+ * describes something the operator must act on. (75 = EX_TEMPFAIL, the
+ * conventional "try again" code.)
+ *
+ * The accepted-with-issues arm applies the same rule one level down: a pass that
+ * landed real work AND refused real work is neither a clean success nor a
+ * nothing-to-recover, and it gets its own token so the three are told apart
+ * without reading `issues`.
+ */
+export async function recoverIngestVerb(options) {
+    let summary;
+    try {
+        summary = await recoverIngestHostResults(options);
+    }
+    catch (error) {
+        return {
+            status: "unrunnable",
+            message: error instanceof Error ? error.message : String(error),
+        };
+    }
+    const expectedPendingOnly = summary.issues.length > 0 &&
+        summary.issues.every((issue) => issue.code === "submission_missing");
+    const recoveredNothing = summary.accepted_count === 0 &&
+        summary.completed_work_item_ids.length === 0 &&
+        !expectedPendingOnly;
+    // A pass that accepted real work AND refused real work. Computed from the SAME
+    // two facts the other arms read — an acceptance happened, and at least one
+    // issue is not the expected-pending code — so this arm does not re-derive
+    // "was there a refusal", which is what would let the token and the issue list
+    // disagree.
+    const acceptedWithIssues = !recoveredNothing &&
+        !expectedPendingOnly &&
+        summary.issues.length > 0;
+    const body = {
+        status: recoveredNothing
+            ? "nothing-to-recover"
+            : expectedPendingOnly
+                ? "pending"
+                : acceptedWithIssues
+                    ? "recovered-with-issues"
+                    : "recovered",
+        run_id: options.runId,
+        accepted_count: summary.accepted_count,
+        completed_work_item_ids: summary.completed_work_item_ids,
+        pending_work_item_ids: summary.pending_work_item_ids,
+        issues: summary.issues,
+        // The per-item progress the issues alone cannot express: an item whose
+        // edits LANDED but whose result file is missing is partial progress, and it
+        // would otherwise be indistinguishable here from one the host never started.
+        worked_but_unreported_work_item_ids: [...summary.work_item_outcomes]
+            .filter(([, outcome]) => outcome === "missing_result_with_commit")
+            .map(([id]) => id)
+            .sort(),
+    };
+    if (recoveredNothing)
+        return { status: "nothing-to-recover", body, exitCode: 1 };
+    if (expectedPendingOnly)
+        return { status: "pending", body, exitCode: 75 };
+    if (acceptedWithIssues) {
+        return { status: "recovered-with-issues", body, exitCode: 2 };
+    }
+    return { status: "recovered", body };
+}
+/**
+ * `recover-submission`'s whole decision, minus argv parsing and printing — the
+ * same extraction, so its no-live-binding refusal and its refusal path are
+ * covered by a test instead of by a manual smoke log.
+ *
+ * A successful rescue LANDS a submission, which changes what the run's persisted
+ * step contract is still asking for, so it invalidates that contract exactly as
+ * `recover-ingest` does. The invalidation is best-effort by construction
+ * (`invalidateStepContracts` swallows a missing steps tree), so a rescue can
+ * never be reported as failed because a stale prompt could not be removed.
+ */
+export async function recoverSubmissionVerb(options) {
+    const binding = await remediationSubmissionBinding({
+        root: options.root,
+        artifactsDir: options.artifactsDir,
+        runId: options.runId,
+        workItemId: options.submissionId,
+    });
+    if (binding === null) {
+        // No contract to check against must never read as "passes".
+        return {
+            status: "unrunnable",
+            message: `No live workload for run '${options.runId}' names work item ` +
+                `'${options.submissionId}'. Recovery refuses a submission it cannot validate.`,
+        };
+    }
+    const outcome = await recoverSubmission({
+        root: options.root,
+        artifactsDir: options.artifactsDir,
+        runId: options.runId,
+        submissionId: options.submissionId,
+        fromPath: options.from,
+        lane: options.submissionId,
+        submissionDir: binding.submissionDir,
+    }, binding.validate);
+    if (!outcome.ok) {
+        return {
+            status: "unrunnable",
+            message: `recover-submission refused the payload for '${options.submissionId}' ` +
+                `(${outcome.issue.code}): ${outcome.issue.message}`,
+        };
+    }
+    await invalidateStepContracts(options.artifactsDir);
+    return {
+        status: "recovered",
+        body: {
+            status: "recovered",
+            work_item_id: options.submissionId,
+            submission_path: outcome.submission_path,
+        },
+    };
+}
 export function runValidateCommand(deps = {}) {
     const run = deps.run ?? runTracked;
     const log = deps.log ?? console.log;

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package/dist/remediate/intake.d.ts

@@ -183,6 +183,41 @@ export declare function resolveManifestSources(root: string, manifest: IntakeSou
     missing: IntakeSource[];
 };
 export declare function blockingIntakeQuestions(summary: IntakeSummary | undefined): IntakeOpenQuestion[];
+/**
+ * Reconcile an intake summary against the clarification file that answers its
+ * open questions — the mechanical form of "resolved at the checkpoint is
+ * resolved everywhere" (open-bugs: answering an intake question did not clear
+ * `open_questions`).
+ *
+ * The defect was a split authority, not a missing check: the host answered in
+ * `intake-clarifications.json` (the file the tool's own step names), while
+ * `decideNextStep` gated on `intake-summary.json`'s `open_questions[]`. The two
+ * could only agree if the host ALSO hand-edited the summary — a workflow that
+ * depended on the host remembering, which is exactly the latent failure mode the
+ * tool must not have. So the answer file is applied HERE, at the single read
+ * every consumer already goes through (`readIntakeArtifacts`), rather than at
+ * each gate: the reconcile cannot be skipped by a consumer that forgot to ask.
+ *
+ * `answered` is the resolution's ids that actually carry a decision. A blank
+ * answer is not one: `validateClarificationResolution` requires the field to be
+ * present, but a whitespace-only string decides nothing, and treating it as a
+ * resolution would clear a blocking question the user never addressed.
+ *
+ * Pure and idempotent, and it never invents a `ready`: it removes resolved
+ * questions and leaves `ready` exactly as authored. A run whose only blocking
+ * question is now answered still becomes unusable if the host left `ready:
+ * false` — that stays the author's claim about completeness, and the
+ * `ready:false` path already re-issues synthesize_intake.
+ *
+ * The RESOLVED questions are returned rather than merely dropped, because a
+ * second read of the same tree (the loader re-passes the same files every
+ * next-step) must still recognize an answer naming a question this pass removed
+ * — see the resolver's id-join.
+ */
+export declare function reconcileIntakeQuestions(summary: IntakeSummary | undefined, resolution: unknown): {
+    summary: IntakeSummary | undefined;
+    resolvedQuestions: IntakeOpenQuestion[];
+};
 export declare function intakeSummaryContentErrors(summary: IntakeSummary): string[];
 export declare function isIntakeReady(summary: IntakeSummary | undefined): boolean;
 export interface ClarificationValidationResult {
@@ -201,6 +236,14 @@ export declare function readIntakeArtifacts(artifactsDir: string): Promise<{
     manifest?: IntakeSourceManifest;
     conversationStart?: string;
     summary?: IntakeSummary;
+    /**
+     * The `open_questions` entries this read REMOVED from `summary` because the
+     * clarification resolution answered them, so a caller validating that file can
+     * still recognize an id the reconciliation just cleared — otherwise a re-run
+     * carrying an already-applied answer would be refused for naming an "unknown"
+     * id, and the run would be stuck on a question it had already answered.
+     */
+    resolvedQuestions: IntakeOpenQuestion[];
     clarificationResolution?: unknown;
     brief?: string;
 }>;

package/dist/remediate/intake.d.ts.map

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package/dist/remediate/intake.js

@@ -218,6 +218,68 @@ export function blockingIntakeQuestions(summary) {
     // semantics so a question with no explicit blocking field is NON-blocking.
     return (summary?.open_questions ?? []).filter((question) => question.blocking === true);
 }
+/**
+ * Reconcile an intake summary against the clarification file that answers its
+ * open questions — the mechanical form of "resolved at the checkpoint is
+ * resolved everywhere" (open-bugs: answering an intake question did not clear
+ * `open_questions`).
+ *
+ * The defect was a split authority, not a missing check: the host answered in
+ * `intake-clarifications.json` (the file the tool's own step names), while
+ * `decideNextStep` gated on `intake-summary.json`'s `open_questions[]`. The two
+ * could only agree if the host ALSO hand-edited the summary — a workflow that
+ * depended on the host remembering, which is exactly the latent failure mode the
+ * tool must not have. So the answer file is applied HERE, at the single read
+ * every consumer already goes through (`readIntakeArtifacts`), rather than at
+ * each gate: the reconcile cannot be skipped by a consumer that forgot to ask.
+ *
+ * `answered` is the resolution's ids that actually carry a decision. A blank
+ * answer is not one: `validateClarificationResolution` requires the field to be
+ * present, but a whitespace-only string decides nothing, and treating it as a
+ * resolution would clear a blocking question the user never addressed.
+ *
+ * Pure and idempotent, and it never invents a `ready`: it removes resolved
+ * questions and leaves `ready` exactly as authored. A run whose only blocking
+ * question is now answered still becomes unusable if the host left `ready:
+ * false` — that stays the author's claim about completeness, and the
+ * `ready:false` path already re-issues synthesize_intake.
+ *
+ * The RESOLVED questions are returned rather than merely dropped, because a
+ * second read of the same tree (the loader re-passes the same files every
+ * next-step) must still recognize an answer naming a question this pass removed
+ * — see the resolver's id-join.
+ */
+export function reconcileIntakeQuestions(summary, resolution) {
+    if (!summary)
+        return { summary, resolvedQuestions: [] };
+    const answered = new Set();
+    if (isRecord(resolution) && Array.isArray(resolution.answers)) {
+        for (const answer of resolution.answers) {
+            if (!isRecord(answer))
+                continue;
+            const id = answer.question_id;
+            const text = answer.answer;
+            if (typeof id === "string" &&
+                id.length > 0 &&
+                typeof text === "string" &&
+                text.trim().length > 0) {
+                answered.add(id);
+            }
+        }
+    }
+    if (answered.size === 0)
+        return { summary, resolvedQuestions: [] };
+    const resolvedQuestions = summary.open_questions.filter((question) => answered.has(question.id));
+    if (resolvedQuestions.length === 0)
+        return { summary, resolvedQuestions: [] };
+    return {
+        summary: {
+            ...summary,
+            open_questions: summary.open_questions.filter((question) => !answered.has(question.id)),
+        },
+        resolvedQuestions,
+    };
+}
 export function intakeSummaryContentErrors(summary) {
     if (!summary.ready)
         return [];
@@ -298,25 +360,32 @@ export function validateClarificationResolution(resolution, blockingQuestions, a
 export async function readIntakeArtifacts(artifactsDir) {
     const paths = intakePaths(artifactsDir);
     const rawSummary = await readOptionalJsonFile(paths.summary);
+    const clarificationResolution = await (async () => {
+        try {
+            return await readOptionalJsonFile(paths.clarificationResolution);
+        }
+        catch {
+            // Malformed JSON in the clarification file is treated as absent;
+            // validation in resolveIntakeStep will re-emit collect_intake_clarifications.
+            return undefined;
+        }
+    })();
+    const reconciliation = reconcileIntakeQuestions(rawSummary === undefined
+        ? undefined
+        : validateIntakeSummary(rawSummary, paths.summary), clarificationResolution);
     return {
         manifest: await readOptionalJsonFile(paths.sourceManifest),
         conversationStart: await readOptionalTextFile(paths.conversationStart),
         // File absent → undefined (no summary yet, not a defect). File present →
         // validated at read time (see validateIntakeSummary); malformed content
         // throws rather than being trusted as a well-formed IntakeSummary.
-        summary: rawSummary === undefined
-            ? undefined
-            : validateIntakeSummary(rawSummary, paths.summary),
-        clarificationResolution: await (async () => {
-            try {
-                return await readOptionalJsonFile(paths.clarificationResolution);
-            }
-            catch {
-                // Malformed JSON in the clarification file is treated as absent;
-                // validation in resolveIntakeStep will re-emit collect_intake_clarifications.
-                return undefined;
-            }
-        })(),
+        //
+        // Applied through `reconcileIntakeQuestions` so the answered questions are
+        // gone for EVERY consumer of this read — the decide loop's `isIntakeReady`
+        // gate, the resolver, and the clarification prompt alike.
+        summary: reconciliation.summary,
+        resolvedQuestions: reconciliation.resolvedQuestions,
+        clarificationResolution,
         brief: await readOptionalTextFile(paths.brief),
     };
 }

package/dist/remediate/intake.js.map

@@ -1 +1 @@
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package/dist/remediate/phases/close.d.ts

@@ -3,7 +3,38 @@ import { OrchestratorOptions } from "../types/options.js";
 import type { RemediationOutcomesReport, RunLogger, VerificationReport } from "audit-tools/shared";
 import type { ClosingAction } from "audit-tools/shared";
 import type { OutcomeCoverageLedger } from "../state/types.js";
-import { type FinalGateReport } from "../../shared/types/remediationOutcome.js";
+import { type FinalGateReport, type RunRecovery } from "../../shared/types/remediationOutcome.js";
+/**
+ * How this run was recovered, as read from the submission ledger at close.
+ *
+ * THE LEDGER'S READER. Every append site writes the ledger; until this existed,
+ * no CLOSE-phase surface read it, so a run repaired through a recovery verb — a
+ * lower evidence bar than the normal lane's — produced a completion report
+ * byte-identical to a clean one. The facts were durable and unreadable at the
+ * same time.
+ *
+ * Read once, here, and THREADED into both the outcomes contract and the
+ * markdown render rather than re-read by either: {@link
+ * cleanupTempBranchesAndArtifacts} deletes the artifacts directory (and the
+ * ledger under it) on a green close, so a builder that re-read would be reading
+ * a deleted file.
+ *
+ * Scoped to this run by `state.plan.plan_id` — the SAME id the remediate host
+ * handoff mints its ledger events under (`stateRunId` in
+ * `src/remediate/steps/nextStep.ts`), so the scope is the producer's own
+ * identity rather than a second spelling of it. `submissions/` sits under the
+ * artifacts directory and is removed with it on a green close, but a preserved
+ * (non-green) directory may outlive a later run, and another run's recovery
+ * must never mark this one.
+ *
+ * An absent ledger reads as NO recovery rather than throwing: this is
+ * bookkeeping on a reporting path, and a run that recorded no ledger recorded
+ * no drift. A READ FAILURE is not laundered into that same empty answer —
+ * `readSubmissionLedger` documents that it never throws, and the `catch` here
+ * exists only so that a future change to that guarantee cannot turn an
+ * unreadable ledger into a clean-looking run.
+ */
+export declare function readRunRecoveryFacts(artifactsDir: string, state: RemediationState | null): Promise<RunRecovery>;
 /**
  * Read the run's tool-owned gate outcome for the report.
  *
@@ -15,7 +46,7 @@ import { type FinalGateReport } from "../../shared/types/remediationOutcome.js";
  * {@link ABSENT_FINAL_GATE_REPORT}: stated as absent, never as green.
  */
 export declare function readFinalGateReport(artifactsDir: string): Promise<FinalGateReport>;
-export declare function buildRemediationOutcomesReport(state: RemediationState, closingResult: ClosingResult, finalGate?: FinalGateReport): RemediationOutcomesReport;
+export declare function buildRemediationOutcomesReport(state: RemediationState, closingResult: ClosingResult, finalGate?: FinalGateReport, recovery?: RunRecovery): RemediationOutcomesReport;
 /**
  * Build the outcomes file's coverage-ledger section: the plan's coverage ledger
  * with every never-planned entry (cross-lens-deduped, checkpoint-dropped,

package/dist/remediate/phases/close.d.ts.map

@@ -1 +1 @@
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