audit-tools 0.37.0 → 0.39.0

package/dist/remediate/dispatch/ownershipRegistry.js

@@ -432,26 +432,61 @@ export class OwnershipRegistry {
         }
         return registry;
     }
-    /** Write checkpoint synchronously after each mutation. */
+    /**
+     * PERSIST-LOCKING-DISJUNCTION-RESOLUTION (CP-NODE-2 invariants[7]) — branch (b).
+     *
+     * The disjunction required EITHER (a) routing this checkpoint write through
+     * the shared async locked-JSON persistence path (src/shared/io/lockedJsonStore.ts,
+     * built on the async `withFileLock`), OR (b) a recorded finding that
+     * single-writer discipline genuinely holds for `ownership-registry.json`.
+     *
+     * Branch (a) is not implementable in this module's granted write scope: the
+     * shared locked-JSON store has no synchronous entry point, while `_persist`
+     * is called synchronously from six in-class mutators (`initialize`,
+     * `claimAmendment`, `releaseAmendments`, `claimInFlight`, `releaseInFlight`,
+     * `handoffInFlight`) whose own callers — `src/remediate/dispatch/amendmentClaim.ts`,
+     * `src/remediate/steps/dispatch/marshal.ts`, `src/remediate/steps/dispatch/writeScope.ts`
+     * — consume the synchronous return/throw semantics directly and sit outside
+     * this contract's file scope. Converting `_persist` to async would also turn
+     * `claimInFlight`'s synchronous disjointness-violation throw into a rejected
+     * promise, changing failure semantics those callers depend on. Minting a
+     * second, synchronous locking primitive alongside the shared async one is
+     * forbidden regardless.
+     *
+     * Branch (b), taken here: single-writer discipline holds — trivially, because
+     * checkpoint persistence has no live writer in production today. Evidence
+     * (re-verify with the same greps before ever relying on this holding):
+     *   - `grep -rn "new OwnershipRegistry(" src/` finds exactly two production
+     *     instantiation sites — `src/remediate/steps/dispatch/marshal.ts` ("a
+     *     lightweight ownership registry ... interim path, until rollingDispatch
+     *     replaces this") and `src/remediate/steps/dispatch/writeScope.ts` (an
+     *     "ephemeral OwnershipRegistry") — both zero-argument, so `checkpointPath`
+     *     is `undefined` and the early-return below makes this method a no-op on
+     *     every current production call.
+     *   - `OwnershipRegistry.loadFromCheckpoint` (the only reader of a persisted
+     *     checkpoint) has zero production callers.
+     *   So there is no live writer — concurrent or solo — to the checkpoint file
+     *   today. Should a future caller (e.g. the rolling-dispatch engine the
+     *   marshal.ts comment anticipates) start passing a real `checkpointPath`, it
+     *   would drive from the single in-process synchronous scheduling loop this
+     *   file's own header already documents ("Atomicity: ... a single-threaded
+     *   orchestrator") — so single-writer discipline would continue to hold
+     *   structurally, not merely by absence of wiring. Re-run the greps above
+     *   before wiring a second `checkpointPath`-bearing caller.
+     *
+     * UNCONDITIONALLY on either branch: a persist failure must reach the caller
+     * instead of being swallowed. This method previously caught the write error
+     * and only logged it to stderr, leaving the in-memory registry silently
+     * ahead of disk so a restart lost every claim since the last successful
+     * persist. It no longer catches: an `mkdirSync`/`writeFileSync` failure now
+     * propagates straight out of `_persist` and its six mutator callers.
+     */
     _persist() {
         if (!this.checkpointPath)
             return;
         const json = JSON.stringify(this.serialize(), null, 2) + "\n";
-        try {
-            mkdirSync(dirname(this.checkpointPath), { recursive: true });
-            writeFileSync(this.checkpointPath, json, "utf8");
-        }
-        catch (err) {
-            // Best-effort: a checkpoint write failure must not crash the orchestrator.
-            process.stderr.write(JSON.stringify({
-                level: "warn",
-                event: "ownership_registry_persist_failed",
-                path: this.checkpointPath,
-                code: err.code ?? null,
-                message: String(err),
-                ts: new Date().toISOString(),
-            }) + "\n");
-        }
+        mkdirSync(dirname(this.checkpointPath), { recursive: true });
+        writeFileSync(this.checkpointPath, json, "utf8");
     }
     /** Load from a checkpoint file; returns undefined if the file doesn't exist or can't be parsed. */
     static loadFromCheckpoint(checkpointPath, knownNodeIds) {

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package/dist/remediate/intake.d.ts

@@ -1,3 +1,4 @@
+import { z } from "zod";
 import type { AuditFindingsReport, FindingSeverity } from "audit-tools/shared";
 export declare const INTAKE_SOURCE_MANIFEST_SCHEMA_VERSION: "remediate-code-intake-source-manifest/v1alpha1";
 export declare const INTAKE_SUMMARY_SCHEMA_VERSION: "remediate-code-intake-summary/v1alpha1";
@@ -13,25 +14,113 @@ export interface IntakeSourceManifest {
     created_from: "input" | "default_candidates" | "conversation" | "mixed";
     sources: IntakeSource[];
 }
-export interface IntakeOpenQuestion {
+export declare const IntakeOpenQuestionSchema: z.ZodObject<{
+    id: z.ZodString;
+    question: z.ZodString;
+    category: z.ZodOptional<z.ZodString>;
+    blocking: z.ZodOptional<z.ZodBoolean>;
+}, "strip", z.ZodTypeAny, {
     id: string;
     question: string;
-    category?: string;
-    blocking?: boolean;
-}
-export interface IntakeSummary {
-    schema_version: typeof INTAKE_SUMMARY_SCHEMA_VERSION;
+    category?: string | undefined;
+    blocking?: boolean | undefined;
+}, {
+    id: string;
+    question: string;
+    category?: string | undefined;
+    blocking?: boolean | undefined;
+}>;
+export type IntakeOpenQuestion = z.infer<typeof IntakeOpenQuestionSchema>;
+export declare const IntakeSummarySchema: z.ZodObject<{
+    schema_version: z.ZodLiteral<"remediate-code-intake-summary/v1alpha1">;
+    ready: z.ZodBoolean;
+    source_type: z.ZodEnum<["structured_audit", "documents", "conversation", "mixed"]>;
+    goals: z.ZodArray<z.ZodString, "many">;
+    non_goals: z.ZodArray<z.ZodString, "many">;
+    constraints: z.ZodArray<z.ZodString, "many">;
+    affected_files: z.ZodArray<z.ZodObject<{
+        path: z.ZodString;
+        reason: z.ZodOptional<z.ZodString>;
+    }, "strip", z.ZodTypeAny, {
+        path: string;
+        reason?: string | undefined;
+    }, {
+        path: string;
+        reason?: string | undefined;
+    }>, "many">;
+    open_questions: z.ZodArray<z.ZodObject<{
+        id: z.ZodString;
+        question: z.ZodString;
+        category: z.ZodOptional<z.ZodString>;
+        blocking: z.ZodOptional<z.ZodBoolean>;
+    }, "strip", z.ZodTypeAny, {
+        id: string;
+        question: string;
+        category?: string | undefined;
+        blocking?: boolean | undefined;
+    }, {
+        id: string;
+        question: string;
+        category?: string | undefined;
+        blocking?: boolean | undefined;
+    }>, "many">;
+}, "strip", z.ZodTypeAny, {
+    affected_files: {
+        path: string;
+        reason?: string | undefined;
+    }[];
+    schema_version: "remediate-code-intake-summary/v1alpha1";
     ready: boolean;
-    source_type: "structured_audit" | "documents" | "conversation" | "mixed";
-    goals: string[];
-    non_goals: string[];
     constraints: string[];
+    source_type: "conversation" | "structured_audit" | "mixed" | "documents";
+    non_goals: string[];
+    goals: string[];
+    open_questions: {
+        id: string;
+        question: string;
+        category?: string | undefined;
+        blocking?: boolean | undefined;
+    }[];
+}, {
     affected_files: {
         path: string;
-        reason?: string;
+        reason?: string | undefined;
     }[];
-    open_questions: IntakeOpenQuestion[];
-}
+    schema_version: "remediate-code-intake-summary/v1alpha1";
+    ready: boolean;
+    constraints: string[];
+    source_type: "conversation" | "structured_audit" | "mixed" | "documents";
+    non_goals: string[];
+    goals: string[];
+    open_questions: {
+        id: string;
+        question: string;
+        category?: string | undefined;
+        blocking?: boolean | undefined;
+    }[];
+}>;
+export type IntakeSummary = z.infer<typeof IntakeSummarySchema>;
+/**
+ * Validate a raw parsed `intake-summary.json` payload against
+ * {@link IntakeSummarySchema}, throwing a legible Error when the shape does
+ * not conform — the read-time refusal for CP-NODE-2 invariants[11]'s
+ * 'unvalidated intake artifacts' defect class. Before this, `readIntakeArtifacts`
+ * read the file through `readOptionalJsonFile<T>`, a bare `JSON.parse(content)
+ * as T` assertion with zero runtime shape checking (src/shared/io/json.ts), so
+ * a structurally malformed summary — e.g. `ready: "yes"` (a truthy STRING, not
+ * a boolean, so `Boolean(summary.ready)` in `isIntakeReady` silently accepted
+ * it) or a non-array `goals` — was trusted verbatim. The thrown Error's
+ * message becomes the caller's refusal reason: `readIntakeArtifacts` and its
+ * callers run inside `runWithBlockedStepBackstop` (src/shared/io/stepContractWriter.ts),
+ * which turns any throw into a `blocked` step contract naming the cause
+ * verbatim — the mechanism this validation deliberately relies on instead of
+ * degrading silently to `undefined` (contrast the sibling clarification-file
+ * JSON-parse-failure branch a few lines below, which intentionally DOES
+ * degrade to absent because `resolveIntakeStep` re-prompts for it downstream;
+ * `intake-summary.json` has no such re-synthesis path, so silence there would
+ * strand the run on unvalidated data instead).
+ */
+export declare function validateIntakeSummary(raw: unknown, path: string): IntakeSummary;
 export declare function intakePaths(artifactsDir: string): {
     dir: string;
     sourceManifest: string;

package/dist/remediate/intake.d.ts.map

@@ -1 +1 @@
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package/dist/remediate/intake.js

@@ -1,9 +1,68 @@
 import { existsSync } from "node:fs";
 import { join, resolve } from "node:path";
+import { z } from "zod";
 import { hashContent, readOptionalJsonFile, readOptionalTextFile, isRecord, severityCompare, countBy, } from "audit-tools/shared";
 export const INTAKE_SOURCE_MANIFEST_SCHEMA_VERSION = "remediate-code-intake-source-manifest/v1alpha1";
 export const INTAKE_SUMMARY_SCHEMA_VERSION = "remediate-code-intake-summary/v1alpha1";
 export const INTAKE_CLARIFICATION_SCHEMA_VERSION = "remediate-code-intake-clarifications/v1alpha1";
+// Zod is the single source for shape + type here (matching the repo-wide
+// zod-single-source convention, e.g. RemediationBlockSchema/ItemSpecSchema in
+// src/remediate/state/types.ts) rather than a hand-written interface kept in
+// lockstep with a second, independent runtime check. Deliberately NOT
+// `.strict()`: intake-summary.json is HOST-AUTHORED (the LLM-produced artifact
+// synthesizeIntakePrompt's template asks for), the same trust tier as the
+// auditor's `Finding` contract (FindingSchema, also non-strict) — an unknown
+// extra field is not the defect class this validates; a wrong-shaped KNOWN
+// field is (CP-NODE-2 invariants[11]).
+export const IntakeOpenQuestionSchema = z.object({
+    id: z.string(),
+    question: z.string(),
+    category: z.string().optional(),
+    blocking: z.boolean().optional(),
+});
+export const IntakeSummarySchema = z.object({
+    schema_version: z.literal(INTAKE_SUMMARY_SCHEMA_VERSION),
+    ready: z.boolean(),
+    source_type: z.enum(["structured_audit", "documents", "conversation", "mixed"]),
+    goals: z.array(z.string()),
+    non_goals: z.array(z.string()),
+    constraints: z.array(z.string()),
+    affected_files: z.array(z.object({ path: z.string(), reason: z.string().optional() })),
+    open_questions: z.array(IntakeOpenQuestionSchema),
+});
+/**
+ * Validate a raw parsed `intake-summary.json` payload against
+ * {@link IntakeSummarySchema}, throwing a legible Error when the shape does
+ * not conform — the read-time refusal for CP-NODE-2 invariants[11]'s
+ * 'unvalidated intake artifacts' defect class. Before this, `readIntakeArtifacts`
+ * read the file through `readOptionalJsonFile<T>`, a bare `JSON.parse(content)
+ * as T` assertion with zero runtime shape checking (src/shared/io/json.ts), so
+ * a structurally malformed summary — e.g. `ready: "yes"` (a truthy STRING, not
+ * a boolean, so `Boolean(summary.ready)` in `isIntakeReady` silently accepted
+ * it) or a non-array `goals` — was trusted verbatim. The thrown Error's
+ * message becomes the caller's refusal reason: `readIntakeArtifacts` and its
+ * callers run inside `runWithBlockedStepBackstop` (src/shared/io/stepContractWriter.ts),
+ * which turns any throw into a `blocked` step contract naming the cause
+ * verbatim — the mechanism this validation deliberately relies on instead of
+ * degrading silently to `undefined` (contrast the sibling clarification-file
+ * JSON-parse-failure branch a few lines below, which intentionally DOES
+ * degrade to absent because `resolveIntakeStep` re-prompts for it downstream;
+ * `intake-summary.json` has no such re-synthesis path, so silence there would
+ * strand the run on unvalidated data instead).
+ */
+export function validateIntakeSummary(raw, path) {
+    const parsed = IntakeSummarySchema.safeParse(raw);
+    if (!parsed.success) {
+        const issues = parsed.error.issues
+            .map((issue) => `${issue.path.length > 0 ? issue.path.join(".") : "(root)"}: ${issue.message}`)
+            .join("; ");
+        throw new Error(`Malformed intake summary at ${path}: ${issues}. Fix the file to match the ` +
+            "IntakeSummary contract (schema_version, ready:boolean, source_type, " +
+            "goals/non_goals/constraints:string[], affected_files:{path,reason?}[], " +
+            "open_questions:{id,question,category?,blocking?}[]) and rerun next-step.");
+    }
+    return parsed.data;
+}
 export function intakePaths(artifactsDir) {
     const dir = join(artifactsDir, "intake");
     return {
@@ -266,10 +325,16 @@ export function validateClarificationResolution(resolution, blockingQuestions, a
 }
 export async function readIntakeArtifacts(artifactsDir) {
     const paths = intakePaths(artifactsDir);
+    const rawSummary = await readOptionalJsonFile(paths.summary);
     return {
         manifest: await readOptionalJsonFile(paths.sourceManifest),
         conversationStart: await readOptionalTextFile(paths.conversationStart),
-        summary: await readOptionalJsonFile(paths.summary),
+        // File absent → undefined (no summary yet, not a defect). File present →
+        // validated at read time (see validateIntakeSummary); malformed content
+        // throws rather than being trusted as a well-formed IntakeSummary.
+        summary: rawSummary === undefined
+            ? undefined
+            : validateIntakeSummary(rawSummary, paths.summary),
         clarificationResolution: await (async () => {
             try {
                 return await readOptionalJsonFile(paths.clarificationResolution);

package/dist/remediate/intake.js.map

@@ -1 +1 @@
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package/dist/remediate/phases/close.d.ts.map

@@ -1 +1 @@
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package/dist/remediate/phases/close.js

@@ -7,6 +7,7 @@ import { AGENT_FEEDBACK_FILENAME, normalizeRepoPath, parseReflectionsNdjson, rea
 import { CONTRACT_PIPELINE_VERIFICATION_REPORT_VERSION } from "audit-tools/shared";
 import { runTracked } from "audit-tools/shared";
 import { FAILURE_OUTPUT_TAIL_CHARS } from "./constants.js";
+import { verifyAnalyzerLeads } from "./closeVerifyAnalyzerLeads.js";
 import { intakePaths } from "../intake.js";
 import { isAuditFindingsReport } from "./plan.js";
 import { dispositionToOutcomeStatus, isInProgressStatus, isSkipStatus, isUnsuccessfulEndStatus, isVerifiedCompleteStatus, statusToDisposition, } from "../state/itemStatus.js";
@@ -113,6 +114,9 @@ export function buildRemediationOutcomesReport(state, closingResult) {
             ...(item.started_at ? { started_at: item.started_at } : {}),
             ...(item.completed_at ? { completed_at: item.completed_at } : {}),
             ...(durationMs !== undefined ? { duration_ms: durationMs } : {}),
+            ...(item.mechanical_verification
+                ? { mechanical_verification: item.mechanical_verification }
+                : {}),
         };
         if (!finding) {
             // Degenerate (corrupt state): without the plan finding there is no payload
@@ -1033,6 +1037,13 @@ function buildRemediationReportMarkdown(state, entries, closingResult, e2ePassed
             reportContent += `- ${lens}: ${parts.join(", ")}\n`;
         }
     }
+    // Item C — mechanical re-verify summary (render of the per-outcome
+    // `mechanical_verification` field; present only when the leg ran).
+    const mechanical = outcomesReport.outcomes.filter((o) => o.mechanical_verification);
+    if (mechanical.length > 0) {
+        const count = (status) => mechanical.filter((o) => o.mechanical_verification.status === status).length;
+        reportContent += `\nMechanical re-verify (analyzer-born findings): ${count("verified_mechanically")} verified by analyzer re-run, ${count("lead_persists")} lead(s) persisting, ${count("skipped")} skipped (analyzer unavailable/unadmitted).\n`;
+    }
     if (!combinedTest.passed) {
         reportContent += `\n## Combined Test Suite Failure\n\nThe full test suite failed after remediation. No items with a resolved status were available to re-block, so the run completed, but the following failure was recorded:\n\n`;
         if (combinedTest.output)
@@ -1084,9 +1095,14 @@ export async function cleanupTempBranchesAndArtifacts(options, completeState, co
     catch (error) {
         const reason = error instanceof Error ? error.message : String(error);
         console.warn("Failed to clean up temporary git branches.", error);
+        // kind:"error" (not "outcome" — that kind is reserved for the one-line-
+        // per-finding remediation outcome emitted below; a cleanup failure is a
+        // run-level diagnostic, not a finding disposition. Mislabeling this
+        // duplicated the outcome-line count whenever this branch fired — see the
+        // matching fix a few lines down for the state-persist failure.)
         runLogger?.event({
             phase: "close",
-            kind: "outcome",
+            kind: "error",
             obligation: "closing",
             note: `Failed to clean up temporary git branches: ${reason}`,
         });
@@ -1103,11 +1119,15 @@ export async function cleanupTempBranchesAndArtifacts(options, completeState, co
         // a failed final-state persist means a restart resumes from the PRE-close
         // state and re-runs closing actions (re-commit/re-push) with no operator
         // clue why. Surface it on the console and in the structured run log.
+        // kind:"error" — see the matching note on the branch-cleanup catch above:
+        // this is a run-level diagnostic (the final-state persist itself failed),
+        // never a per-finding outcome, so it must not share the "outcome" kind
+        // the per-finding loop below emits.
         const reason = error instanceof Error ? error.message : String(error);
         console.warn(`Failed to persist the final remediation state — a resumed run may re-execute closing actions: ${reason}`);
         runLogger?.event({
             phase: "close",
-            kind: "outcome",
+            kind: "error",
             obligation: "closing",
             note: `Final state persist FAILED (run still reported complete): ${reason}`,
         });
@@ -1365,6 +1385,40 @@ export async function runClosePhase(state, options, runLogger) {
         }
         console.warn("Deferred verify residual failed but no resolved items to re-block — completing with the failure recorded in the report.");
     }
+    // 2c. Item C — mechanical re-verify of analyzer-born leads: re-run the same
+    // pinned analyzer per provenance-carrying resolved item and check the exact
+    // content-anchored identity no longer fires. Attribution is exact, so a
+    // persisting lead re-blocks only ITS item (objective evidence to triage) —
+    // never the whole resolved set the way a suite-level red must.
+    const analyzerVerify = await verifyAnalyzerLeads({
+        state,
+        root: options.root,
+        ...(options.analyzerLeadVerifyOverrides
+            ? { overrides: options.analyzerLeadVerifyOverrides }
+            : {}),
+    });
+    if (analyzerVerify.ran) {
+        const now = new Date().toISOString();
+        for (const [findingId, verdict] of Object.entries(analyzerVerify.verdicts)) {
+            const item = state.items[findingId];
+            if (!item)
+                continue;
+            item.mechanical_verification = verdict;
+            if (verdict.status === "lead_persists") {
+                item.status = "blocked";
+                item.completed_at = now;
+                item.failure_reason =
+                    `Mechanical re-verify: analyzer '${verdict.analyzer_id}' still reports this ` +
+                        `finding's content-anchored lead identity after the fix (item C). The lead is ` +
+                        `objective evidence — rework the fix or dispose the item in triage.`;
+            }
+        }
+        if (analyzerVerify.persisting.length > 0) {
+            console.log(`Analyzer lead re-verify: ${analyzerVerify.persisting.length} lead(s) persist ` +
+                `(${analyzerVerify.persisting.join(", ")}). Transitioning back to triage.`);
+            return { ...state, status: "triage" };
+        }
+    }
     // 3. Run end-to-end tests on the fully merged post-remediation state.
     const e2eResult = runE2eTests(state, options);
     if (!e2eResult.passed) {