atris 3.80.1 → 3.82.1

package/commands/worktree.js

@@ -1,548 +1,77 @@
 'use strict';
 
 const fs = require('fs');
-const os = require('os');
 const path = require('path');
-const { spawn, spawnSync } = require('child_process');
+const { spawnSync } = require('child_process');
 const { hasFlag, readFlag } = require('../lib/arg-parser');
 const { stampLatestOpenBriefForWorktree } = require('../lib/brief-ledger');
-const { installKeep, planKeep, removeKeep } = require('../lib/campaign-keep');
-const { isConductorArtifact, isConductorUntracked } = require('../lib/conductor-artifacts');
-const { fixMapDocs } = require('../lib/map-refs');
-const { sleepSync } = require('../lib/sleep-sync');
+const { installKeep, removeKeep } = require('../lib/campaign-keep');
+const { isConductorUntracked } = require('../lib/conductor-artifacts');
 const space = require('../lib/worktree-space');
-const close = require('./close');
-
-const ATRIS_BIN = path.resolve(__dirname, '..', 'bin', 'atris.js');
-
-// Files atris regenerates on its own. Unstaged churn in them is restored
-// before ship commits, unless the commit message names the file. The task
-// projection is rewritten by any task command run in a work folder, and two
-// parallel landings that each carry a copy always clash.
-const REGEN_ADAPTER_FILES = ['AGENTS.md', 'CLAUDE.md', 'GEMINI.md', '.atris/state/tasks.projection.json'];
-const COMMAND_MAX_BUFFER_BYTES = 64 * 1024 * 1024;
-// Push also runs local hooks. Backend startup and regression checks alone can
-// exceed the short network-only allowance used by fetch and discovery.
-const GIT_PUSH_TIMEOUT_MS = 5 * 60 * 1000;
-const GIT_OID_PATTERN = /^[0-9a-f]{40,64}$/;
-const ONE_LAP_PROOF_REF_PATTERN = /^refs\/atris\/one-lap\/([0-9a-f]{40,64})$/;
-const DAY_MS = 24 * 60 * 60 * 1000;
-const SHIP_HEALTH_SOURCE = 'ship-health:experiments-daily';
-
-function gitNetworkEnvironment(source = process.env, cwd = process.cwd()) {
-  const env = { ...source, GIT_TERMINAL_PROMPT: '0' };
-  // Custom commands may be wrappers that do not accept OpenSSH flags.
-  // Leave Git's own command/config/program precedence intact.
-  if (source.GIT_SSH_COMMAND || source.GIT_SSH) return env;
-  const configured = spawnSync('git', ['config', '--get', 'core.sshCommand'], {
-    cwd, encoding: 'utf8', env: source, timeout: 5000, killSignal: 'SIGKILL',
-  });
-  if (configured.status === 0 && String(configured.stdout || '').trim()) return env;
-  env.GIT_SSH_COMMAND = 'ssh -o BatchMode=yes -o ConnectTimeout=10 -o ServerAliveInterval=15';
-  return env;
-}
-
-// A killed network call leaves stderr empty; name the timeout instead.
-function gitFailureDetail(result) {
-  if (result && result.error && result.error.code === 'ETIMEDOUT') return 'timed out';
-  return [result && result.stdout, result && result.stderr]
-    .map(output => String(output || '').trim()).filter(Boolean).join('\n');
-}
-
-function runGit(args, { cwd = process.cwd(), check = true, timeout } = {}) {
-  const network = ['fetch', 'push', 'ls-remote'].includes(args[0]);
-  // Only network calls need the SSH probe; local calls skip its extra git spawn.
-  const defaultTimeout = args[0] === 'push' ? GIT_PUSH_TIMEOUT_MS : network ? 30000 : undefined;
-  const options = { cwd, encoding: 'utf8', timeout: timeout ?? defaultTimeout,
-    killSignal: 'SIGKILL', env: network ? gitNetworkEnvironment(process.env, cwd) : undefined };
-  let result = spawnSync('git', args, options);
-  // Linked checkouts share config. A concurrent start must not silently lose
-  // its owner/base metadata, but real config errors still stop immediately.
-  for (let retry = 1; args[0] === 'config' && retry < 3 && configLocked(result); retry += 1) {
-    sleepSync(100 * retry);
-    result = spawnSync('git', args, options);
-  }
-  if (check && result.status !== 0) {
-    const detail = gitFailureDetail(result);
-    throw new Error(detail === 'timed out' ? `git ${args[0]} timed out` : (detail || `git ${args.join(' ')} failed`));
-  }
-  return result;
-}
-
-function configLocked(result) {
-  return result.status !== 0 && /could not lock config file/i.test(`${result.stderr || ''}${result.stdout || ''}`);
-}
-
-function runCommand(command, { cwd = process.cwd(), check = true } = {}) {
-  const result = spawnSync(command, {
-    cwd,
-    encoding: 'utf8',
-    shell: true,
-    stdio: 'pipe',
-    maxBuffer: COMMAND_MAX_BUFFER_BYTES,
-  });
-  if (result.error) throw result.error;
-  if (check && result.status !== 0) {
-    const msg = (result.stderr || result.stdout || `${command} failed`).trim();
-    throw new Error(msg);
-  }
-  return result;
-}
-
-function statusSnapshot(root) {
-  const result = runGit(['status', '--porcelain=v1', '--untracked-files=all'], { cwd: root, check: false });
-  if (result.status !== 0) return [];
-  return result.stdout
-    .split(/\r?\n/)
-    .map((line) => line.trimEnd())
-    .filter(Boolean);
-}
-
-function newStatusRows(before, after) {
-  const seen = new Set(before);
-  return after.filter((row) => !seen.has(row));
-}
-
-function readOneLapProofBinding(root, branch) {
-  const sidecarPath = path.join(root, '.atris', 'agent-worktree.json');
-  let sidecar = null;
-  try {
-    sidecar = JSON.parse(fs.readFileSync(sidecarPath, 'utf8'));
-  } catch (error) {
-    if (error && error.code !== 'ENOENT') throw new Error('one-lap proof metadata is unreadable');
-  }
-  const metadata = sidecar && sidecar.one_lap_proof;
-  const configured = runGit(['config', '--get', `branch.${branch}.atris-proof-ref`], { cwd: root, check: false });
-  const configuredRef = configured.status === 0 ? String(configured.stdout || '').trim() : '';
-  if (!metadata && !configuredRef) return null;
-  if (!metadata || !configuredRef) throw new Error('one-lap proof binding is incomplete');
-
-  const proofRef = String(metadata.ref || '');
-  const sourceCommit = String(metadata.commit || '');
-  const sourceTree = String(metadata.tree || '');
-  const refMatch = proofRef.match(ONE_LAP_PROOF_REF_PATTERN);
-  if (!refMatch || proofRef !== configuredRef || !GIT_OID_PATTERN.test(sourceCommit) || !GIT_OID_PATTERN.test(sourceTree)) {
-    throw new Error('one-lap proof binding is invalid');
-  }
-  const resolvedCommit = runGit(['rev-parse', '--verify', `${proofRef}^{commit}`], { cwd: root, check: false });
-  const resolvedTree = runGit(['rev-parse', '--verify', `${proofRef}^{tree}`], { cwd: root, check: false });
-  if (resolvedCommit.status !== 0 || String(resolvedCommit.stdout || '').trim() !== sourceCommit || refMatch[1] !== sourceCommit) {
-    throw new Error('one-lap proof commit no longer matches its retained ref');
-  }
-  if (resolvedTree.status !== 0 || String(resolvedTree.stdout || '').trim() !== sourceTree) {
-    throw new Error('one-lap proof tree no longer matches its retained ref');
-  }
-  return { ref: proofRef, commit: sourceCommit, tree: sourceTree };
-}
-
-function worktreeTree(root, source) {
-  const result = runGit(source === 'index'
-    ? ['write-tree']
-    : ['rev-parse', '--verify', 'HEAD^{tree}'], { cwd: root, check: false });
-  if (result.status !== 0) throw new Error(`could not resolve the ${source} tree for one-lap proof`);
-  return String(result.stdout || '').trim();
-}
-
-function assertOneLapProofTree(root, binding, source) {
-  if (!binding) return;
-  if (worktreeTree(root, source) !== binding.tree) {
-    throw new Error(`one-lap ${source} tree differs from the independently verified proof tree`);
-  }
-}
-
-function repoRoot(cwd = process.cwd()) {
-  return runGit(['rev-parse', '--show-toplevel'], { cwd }).stdout.trim();
-}
-
-function slugify(value, fallback = 'task', limit = 48) {
-  const slug = String(value || '')
-    .trim()
-    .toLowerCase()
-    .replace(/[^a-z0-9]+/g, '-')
-    .replace(/^-+|-+$/g, '')
-    .slice(0, limit)
-    .replace(/-+$/g, '');
-  return slug || fallback;
-}
-
-function stamp(now = new Date()) {
-  return now.toISOString().replace(/[-:]/g, '').replace(/\.\d+Z$/, '').replace('T', '-');
-}
-
-function branchName(member, task, now = new Date()) {
-  return `codex/${slugify(member, 'member', 24)}-${slugify(task, 'task', 36)}-${stamp(now)}`;
-}
-
-// The newest earlier run of this same member+job, if its commits never reached
-// the base, so a retry continues that work instead of redoing it. Only the
-// newest run counts: once it landed or did nothing, anything older is stale.
-function lastRunBranch(root, owner, task, base, skip) {
-  const prefix = `codex/${slugify(owner, 'member', 24)}-${slugify(task, 'task', 36)}-`;
-  const listed = runGit(['for-each-ref', '--format=%(refname:short)', `refs/heads/${prefix}*`], { cwd: root, check: false });
-  if (listed.status !== 0) return null;
-  // Only exact runs of this job (stamp plus optional same-second number), so
-  // "fix-login" never matches "fix-login-page".
-  const runs = listed.stdout.split('\n').map((name) => name.trim())
-    .map((name) => ({ name, run: name.slice(prefix.length).match(/^(\d{8}-\d{6})(?:-(\d+))?$/) }))
-    .filter(({ name, run }) => run && name !== skip)
-    .sort((a, b) => b.run[1].localeCompare(a.run[1]) || Number(b.run[2] || 1) - Number(a.run[2] || 1));
-  if (!runs.length) return null;
-  const newest = runs[0].name;
-  const cherry = runGit(['cherry', base, newest], { cwd: root, check: false });
-  if (cherry.status !== 0) return null;
-  return cherry.stdout.split('\n').some((line) => line.startsWith('+')) ? newest : null;
-}
-
-// True only when git proves the branch no longer merges cleanly with the base.
-// merge-tree --write-tree exits 1 on conflict; an error or old git keeps the
-// resume as before.
-function conflictsWithBase(root, base, branch) {
-  const result = runGit(['merge-tree', '--write-tree', '--name-only', base, branch], { cwd: root, check: false });
-  return result.status === 1;
-}
-
-function defaultWorktreePath(root, member, task, now = new Date()) {
-  const name = `${slugify(member, 'member', 24)}-${slugify(task, 'task', 36)}-${stamp(now)}`;
-  return path.join(path.dirname(root), '.agent-worktrees', path.basename(root), name);
-}
-
-function parseWorktrees(text) {
-  const out = [];
-  let current = {};
-  for (const raw of `${text}\n`.split(/\r?\n/)) {
-    const line = raw.trim();
-    if (!line) {
-      if (current.worktree) {
-        let branch = current.branch || 'detached';
-        branch = branch.replace(/^refs\/heads\//, '');
-        const item = { path: current.worktree, branch, head: current.HEAD || '' };
-        if (current.locked) item.locked = true;
-        if (current.prunable) item.prunable = true;
-        out.push(item);
-      }
-      current = {};
-      continue;
-    }
-    const idx = line.indexOf(' ');
-    if (idx === -1) {
-      current[line] = true;
-    } else {
-      current[line.slice(0, idx)] = line.slice(idx + 1);
-    }
-  }
-  return out;
-}
-
-function listWorktrees(root = repoRoot()) {
-  return parseWorktrees(runGit(['worktree', 'list', '--porcelain'], { cwd: root }).stdout);
-}
-
-// Duplicate flight guard. On 2026-08-07 two agents were dispatched onto the
-// same map rewrite 44 seconds apart: fleet dispatch claims a task first, but a
-// direct `worktree start` had no pre-check beyond the target path existing.
-// Refuse only the same task slug. A shared word on an unrelated flight is not
-// a collision (dispatch-cli-900 must not block dispatch-cli-901).
-const AGENT_FLIGHT_NAME_PATTERN = /^codex\/(.+)-(\d{8}-\d{6})$/;
-const FLIGHT_WINDOW_MS = 24 * 60 * 60 * 1000;
-const FLIGHT_STOPWORDS = new Set([
-  'fix', 'add', 'update', 'make', 'change', 'new', 'task', 'work', 'repo',
-  'cli', 'atris', 'backend', 'the', 'a', 'an', 'and', 'for', 'to', 'of', 'in', 'on',
-]);
-
-function flightStampMs(stampText) {
-  const m = /^(\d{4})(\d{2})(\d{2})-(\d{2})(\d{2})(\d{2})$/.exec(String(stampText || ''));
-  if (!m) return null;
-  const [, year, month, day, hour, minute, second] = m.map(Number);
-  if (month < 1 || month > 12 || day < 1 || day > 31 || hour > 23 || minute > 59 || second > 59) return null;
-  return Date.UTC(year, month - 1, day, hour, minute, second);
-}
-
-function taskTokens(value) {
-  return String(value || '')
-    .toLowerCase()
-    .split(/[^a-z0-9]+/)
-    .filter(Boolean)
-    .filter((token) => !FLIGHT_STOPWORDS.has(token));
-}
-
-// codex/<owner>-<task-slug>-<YYYYMMDD-HHMMSS>: drop the owner segment and the
-// stamp, and what is left is the task the flight is working on.
-function parseAgentFlightName(name) {
-  const text = String(name || '').trim().replace(/^refs\/heads\//, '');
-  const match = AGENT_FLIGHT_NAME_PATTERN.exec(text);
-  if (!match) return null;
-  const stampMs = flightStampMs(match[2]);
-  if (stampMs === null) return null;
-  const segments = match[1].split('-').filter(Boolean);
-  if (segments.length < 2) return null;
-  return {
-    name: text,
-    owner: segments[0],
-    taskSlug: segments.slice(1).join('-'),
-    stamp: match[2],
-    stampMs,
-    tokens: taskTokens(segments.slice(1).join('-')),
-  };
-}
-
-function remoteAgentBranchNames(root) {
-  // One ls-remote, best effort: offline dispatchers still get the local view.
-  const result = runGit(['ls-remote', '--heads', 'origin'], { cwd: root, check: false, timeout: 10000 });
-  if (result.status !== 0) return [];
-  return String(result.stdout || '')
-    .split(/\r?\n/)
-    .map((line) => (line.split(/\s+/)[1] || '').replace(/^refs\/heads\//, '').trim())
-    .filter(Boolean);
-}
-
-function inFlightAgentFlights({ root = repoRoot(), now = new Date(), windowMs = FLIGHT_WINDOW_MS } = {}) {
-  const nowMs = now.getTime();
-  const flights = new Map();
-  const add = (name, kind) => {
-    const flight = parseAgentFlightName(name);
-    if (!flight) return;
-    // Branch age comes from the stamp in the name, never a git log per branch.
-    if (kind !== 'worktree' && nowMs - flight.stampMs > windowMs) return;
-    const existing = flights.get(flight.name);
-    if (existing && existing.kind === 'worktree') return;
-    flights.set(flight.name, { ...flight, kind });
-  };
-  for (const wt of listWorktrees(root)) add(wt.branch, 'worktree');
-  const local = runGit(['branch', '--format=%(refname:short)'], { cwd: root, check: false });
-  if (local.status === 0) {
-    for (const name of String(local.stdout || '').split(/\r?\n/)) add(name, 'branch');
-  }
-  for (const name of remoteAgentBranchNames(root)) add(name, 'branch');
-  return [...flights.values()].sort((a, b) => b.stampMs - a.stampMs);
-}
-
-function collidingFlights(flights, taskSlug) {
-  const wanted = String(taskSlug || '').trim().toLowerCase();
-  if (!wanted) return [];
-  return flights.filter((flight) => String(flight.taskSlug || '').toLowerCase() === wanted);
-}
-
-function describeFlightAge(flight, nowMs = Date.now()) {
-  const minutes = Math.max(0, Math.round((nowMs - flight.stampMs) / 60000));
-  if (minutes < 60) return `${minutes}m old`;
-  return `${Math.floor(minutes / 60)}h${minutes % 60}m old`;
-}
-
-function refExists(root, ref) {
-  return runGit(['rev-parse', '--verify', `${ref}^{commit}`], { cwd: root, check: false }).status === 0;
-}
-
-function currentBranch(root = repoRoot()) {
-  return runGit(['branch', '--show-current'], { cwd: root, check: false }).stdout.trim();
-}
-
-function detachedShipBranch(root) {
-  return `codex/${path.basename(root)}`;
-}
-
-function createDetachedShipBranch(root, branch) {
-  if (refExists(root, `refs/heads/${branch}`) || refExists(root, `refs/remotes/origin/${branch}`)) {
-    console.error(`blocked: detached head branch already exists: ${branch}`);
-    return false;
-  }
-  const created = runGit(['switch', '-c', branch], { cwd: root, check: false });
-  if (created.status !== 0) {
-    console.error(`blocked: detached head branch create failed: ${branch}`);
-    console.error((created.stderr || created.stdout || '').trim());
-    return false;
-  }
-  console.log(`ship: detached head, created branch ${branch}`);
-  return true;
-}
-
-function currentUpstream(root) {
-  const result = runGit(['rev-parse', '--abbrev-ref', '--symbolic-full-name', '@{u}'], { cwd: root, check: false });
-  return result.status === 0 ? result.stdout.trim() : '';
-}
-
-function remoteHead(root) {
-  // The saved origin/HEAD survives branch renames. Ask the remote before
-  // trusting it, keeping the offline fallback when the remote is unavailable.
-  const remote = runGit(['remote', 'get-url', 'origin'], { cwd: root, check: false });
-  if (remote.status === 0) {
-    const live = runGit(['ls-remote', '--symref', 'origin', 'HEAD'], { cwd: root, check: false, timeout: 5000 });
-    const match = live.status === 0 && String(live.stdout || '').match(/^ref: refs\/heads\/(.+)\s+HEAD$/m);
-    if (match) {
-      const head = `origin/${match[1]}`;
-      if (!refExists(root, head)) {
-        const fetched = runGit(['fetch', 'origin', `refs/heads/${match[1]}:refs/remotes/${head}`], { cwd: root, check: false, timeout: 5000 });
-        if (fetched.status !== 0 || !refExists(root, head)) {
-          throw new Error('could not fetch the remote default branch; stop and retry when the remote is available');
-        }
-      }
-      return head;
-    }
-  }
-  const result = runGit(['symbolic-ref', '--quiet', '--short', 'refs/remotes/origin/HEAD'], { cwd: root, check: false });
-  return result.status === 0 ? result.stdout.trim() : '';
-}
-
-function normalizeTargetRef(root, target) {
-  const value = String(target || '').trim();
-  if (!value) return '';
-  const remotes = runGit(['remote'], { cwd: root, check: false }).stdout.split(/\r?\n/);
-  const preferRemote =
-    !value.startsWith('origin/') &&
-    !value.startsWith('refs/') &&
-    value !== 'HEAD' &&
-    !/^[0-9a-f]{7,40}$/i.test(value) &&
-    remotes.includes('origin');
-  const remoteRef = value.startsWith('origin/') ? value : `origin/${value}`;
-  if (preferRemote && refExists(root, remoteRef)) return remoteRef;
-  if (preferRemote) return remoteRef;
-  if (refExists(root, value)) return value;
-  if (refExists(root, remoteRef)) return remoteRef;
-  if (value.startsWith('origin/') || remotes.includes('origin')) return remoteRef;
-  return value;
-}
-
-function defaultMainlineBase(root) {
-  const head = remoteHead(root);
-  if (head && refExists(root, head)) return head;
-  for (const candidate of ['origin/main', 'origin/master']) {
-    if (refExists(root, candidate)) return candidate;
-  }
-  return 'HEAD';
-}
-
-function defaultStartBase(root) {
-  const upstream = currentUpstream(root);
-  const mainline = defaultMainlineBase(root);
-  // Always refresh before cutting a worktree: a stale origin/master base sent
-  // an engine off to rebuild work that had already landed (2026-07-09, packs
-  // one-click flight rebuilt the stars backend from a base two PRs behind).
-  refreshRemoteRef(root, mainline);
-  if (!upstream || !refExists(root, upstream)) return mainline;
-  if (mainline === 'HEAD' || mainline === upstream) return upstream;
-  // A launcher upstream that is behind the mainline is a stale cut point
-  // (2026-07-05: a stale origin/task branch sent two flights into rebase
-  // conflicts). Start from the mainline unless the upstream carries new work.
-  refreshRemoteRef(root, upstream);
-  const behind = runGit(['merge-base', '--is-ancestor', upstream, mainline], { cwd: root, check: false });
-  return behind.status === 0 ? mainline : upstream;
-}
-
-function defaultShipTarget(root) {
-  const branch = currentBranch(root);
-  if (branch) {
-    const configured = runGit(['config', '--get', `branch.${branch}.atris-base`], { cwd: root, check: false }).stdout.trim();
-    if (configured && refExists(root, configured)) return configured;
-  }
-  const head = remoteHead(root);
-  if (head && refExists(root, head)) return head;
-  for (const candidate of ['origin/main', 'origin/master']) {
-    if (refExists(root, candidate)) return candidate;
-  }
-  return 'HEAD';
-}
-
-function refreshRemoteRef(root, ref) {
-  if (!ref.startsWith('origin/')) return;
-  const remoteBranch = ref.slice('origin/'.length);
-  const fetched = runGit(['fetch', 'origin', remoteBranch], { cwd: root, check: false, timeout: 5000 });
-  return fetched.status === 0 ? '' : (gitFailureDetail(fetched) || 'fetch failed');
-}
-
-function baseBranchName(ref) {
-  return String(ref || '').replace(/^refs\/heads\//, '').replace(/^origin\//, '');
-}
-
-function statusCounts(root, {
-  ignoredUnstagedFiles = new Set(),
-  ignoredUntrackedFiles = new Set(),
-  ignoreUntracked = null,
-  ignoreAny = null,
-} = {}) {
-  if (!fs.existsSync(root)) return null;
-  // -uall expands untracked directories to individual files so ignoredUntrackedFiles
-  // and ignoreUntracked can match exact paths (plain porcelain collapses them to "?? dir/").
-  const expandUntracked = ignoredUntrackedFiles.size
-    || typeof ignoreUntracked === 'function'
-    || typeof ignoreAny === 'function';
-  const statusArgs = expandUntracked ? ['status', '--porcelain', '-uall'] : ['status', '--porcelain'];
-  const result = runGit(statusArgs, { cwd: root, check: false });
-  if (result.status !== 0) return null;
-  let staged = 0;
-  let unstaged = 0;
-  let untracked = 0;
-  for (const line of result.stdout.split(/\r?\n/).filter(Boolean)) {
-    const file = line.slice(3);
-    if (typeof ignoreAny === 'function' && ignoreAny(file)) continue;
-    if (ignoredUnstagedFiles.has(file) && line[0] === ' ' && line[1] !== ' ') continue;
-    if (line.startsWith('??')) {
-      if (ignoredUntrackedFiles.has(file)) continue;
-      if (typeof ignoreUntracked === 'function' && ignoreUntracked(file)) continue;
-      untracked += 1;
-      continue;
-    }
-    if (line[0] !== ' ') staged += 1;
-    if (line[1] !== ' ') unstaged += 1;
-  }
-  return { staged, unstaged, untracked };
-}
-
-// Remove conductor plumbing from the index after a broad `git add -A`, so the commit
-// records engine output only. Paths that were never staged are simply not listed.
-// GitHub refuses a merge with "Base branch was modified" when another PR
-// merged into the same base a moment earlier; the same merge succeeds on a
-// second try. On 2026-10-15 five parallel dispatches lost three landings to
-// it. Retry only that message, a few times, with a short wait.
-const BASE_MODIFIED_PATTERN = /Base branch was modified/i;
-function mergePrWithRetry(mergeArgs, root, { run = spawnSync, wait = sleepSync, attempts = 4 } = {}) {
-  let merged = run('gh', mergeArgs, { cwd: root, encoding: 'utf8' });
-  for (let attempt = 1; attempt < attempts && merged.status !== 0
-    && BASE_MODIFIED_PATTERN.test(`${merged.stderr || ''}${merged.stdout || ''}`); attempt += 1) {
-    console.log(`merge: base branch moved, retrying (${attempt + 1}/${attempts})`);
-    wait(1500 * attempt);
-    merged = run('gh', mergeArgs, { cwd: root, encoding: 'utf8' });
-  }
-  return merged;
-}
-
-function unstageConductorArtifacts(root) {
-  const staged = runGit(['diff', '--cached', '--name-only'], { cwd: root, check: false });
-  if (staged.status !== 0) return [];
-  const added = runGit(['diff', '--cached', '--name-only', '--diff-filter=A'], { cwd: root, check: false });
-  const newFiles = new Set(String(added.stdout || '').split(/\r?\n/).filter(Boolean));
-  // A file this commit would add under .atris/ is the tool's own state, never work.
-  const drop = String(staged.stdout || '').split(/\r?\n/).filter(Boolean)
-    .filter((file) => isConductorArtifact(file) || (newFiles.has(file) && isConductorUntracked(file)));
-  if (drop.length) runGit(['reset', '-q', 'HEAD', '--', ...drop], { cwd: root, check: false });
-  return drop;
-}
-
-function changedFiles(root, args) {
-  const result = runGit([...args, '--', ...REGEN_ADAPTER_FILES], { cwd: root, check: false });
-  if (result.status !== 0) return new Set();
-  return new Set(result.stdout.split(/\r?\n/).filter(Boolean));
-}
-
-function restoreRegeneratedAdapterChurn(root, message, { dryRun = false } = {}) {
-  const unstaged = changedFiles(root, ['diff', '--name-only']);
-  const staged = changedFiles(root, ['diff', '--cached', '--name-only']);
-  const commitMessage = String(message || '');
-  const skipped = REGEN_ADAPTER_FILES.filter(
-    (file) => unstaged.has(file) && !staged.has(file) && !commitMessage.includes(file)
-  );
-  if (!skipped.length) return [];
-  console.log(`ship: skipped regenerated adapter churn: ${skipped.join(', ')}`);
-  if (!dryRun) runGit(['checkout', '--', ...skipped], { cwd: root });
-  return skipped;
-}
-
-function swarloClaim(root, { channel, taskKey, content }) {
-  const script = path.join(root, 'scripts', 'swarlo.py');
-  if (!fs.existsSync(script)) return 'skip: scripts/swarlo.py not found';
-  const result = spawnSync('python3', [script, 'claim', channel, taskKey, content], { cwd: root, encoding: 'utf8' });
-  const output = `${result.stdout || ''}${result.stderr || ''}`.trim();
-  if (result.status === 0) return output || `claimed ${taskKey}`;
-  return `skip: swarlo claim failed: ${output || result.status}`;
-}
+const worktreeCore = require('../lib/worktree-core');
+
+const {
+  ATRIS_BIN,
+  SWEEP_IDLE_MS,
+  SWEEP_EVERY_HOURS,
+  SWEEP_KEPT_LABELS,
+  announceShippedCopyRemoval,
+  assertOneLapProofTree,
+  baseBranchName,
+  branchName,
+  cleanupWorktrees,
+  collidingFlights,
+  createAgentWorktree,
+  createDetachedShipBranch,
+  createOrFindPr,
+  currentBranch,
+  defaultMainlineBase,
+  defaultShipTarget,
+  defaultStartBase,
+  defaultSweepWorkspace,
+  deniedLaneForShip,
+  describeFlightAge,
+  detachedShipBranch,
+  findPrimaryRoot,
+  flightStampMs,
+  gitFailureDetail,
+  gitNetworkEnvironment,
+  inFlightAgentFlights,
+  listActiveProcessPaths,
+  listWorktrees,
+  lowDiskRefusal,
+  mergePrWithRetry,
+  newStatusRows,
+  normalizeTargetRef,
+  parseAgentFlightName,
+  parseProcessArgPaths,
+  parseWorktrees,
+  plural,
+  prMergeRef,
+  protectedPushRefusal,
+  readOneLapProofBinding,
+  reapShippedCopy,
+  recordWorktreeRemoval,
+  refreshMovedMapRefs,
+  refreshRemoteRef,
+  repoRoot,
+  restoreRegeneratedAdapterChurn,
+  runCommand,
+  runGit,
+  runShipHealthCheck,
+  scheduleShippedCopyRemoval,
+  shipMergeRecord,
+  shippedCopyRemovalPlan,
+  slugify,
+  statusCounts,
+  statusSnapshot,
+  swarloClaim,
+  sweepSchedulePlan,
+  sweepWorkspace,
+  taskTokens,
+  unstageConductorArtifacts,
+  worktreeHasActiveProcess,
+} = worktreeCore;
 
 function printStatus() {
   const root = repoRoot();
@@ -562,241 +91,6 @@ function printStatus() {
   }
 }
 
-// Programmatic core shared by `atris worktree start` and `atris mission start
-// --worktree`: creates the branch + isolated checkout + identity sidecar and
-// returns the facts. Throws on failure; callers own messaging and next steps.
-//
-// checkoutBase (what the branch is cut from) and shipBase (what `atris
-// worktree ship` targets, recorded as branch.<branch>.atris-base) are kept
-// separate on purpose. checkoutBase defaults to the launcher's own
-// upstream/default remote base, so the agent starts from current work.
-// shipBase defaults to the remote mainline for agent/member worktrees regardless of
-// what branch the launcher happened to have checked out. recording the
-// launcher's own feature branch as the ship target false-landed two PRs on
-// 2026-07-04 (ship merged into the launcher's branch, never reached master).
-// --base/--target still overrides both when the caller wants a different
-// checkout point and ship target on purpose.
-//
-// spaceGuard and deps default to on outside temp folders: a low disk reaps
-// finished copies across the workspace and then refuses (ATRIS_LOW_DISK),
-// and a matching install is cloned in as node_modules. deps: false skips
-// the clone; an object passes options through to seedNodeModules.
-function createAgentWorktree({ root = repoRoot(), member = '', agent = '', task, formerTasks = [], branch: branchOverride, path: pathOverride, base: baseOverride, now = new Date(), env = process.env, freeSpace = space.freeBytes, spaceGuard, deps } = {}) {
-  const owner = member || agent;
-  if (!owner || !task) throw new Error('createAgentWorktree: owner (member/agent) and task required');
-  // Pin the caller's flight base, or resolve it once for this new flight.
-  const mainline = baseOverride || defaultMainlineBase(root);
-  // Every new flight pays down completed checkout debt before adding another
-  // full repo copy. Branches and commits survive worktree removal, while real
-  // uncommitted changes remain protected by cleanupWorktrees.
-  const cleanupBudget = { count: 0, kib: 0 };
-  let reapedBeforeStart = [];
-  let cachePrunedBeforeStart = [];
-  try {
-    const cleaned = cleanupWorktrees({ root, base: mainline, apply: true, by: 'atris worktree start', cleanupBudget });
-    reapedBeforeStart = cleaned.removed;
-    cachePrunedBeforeStart = cleaned.cachePruned;
-  } catch {}
-  let branch = branchOverride || branchName(owner, task, now);
-  let target = path.resolve(pathOverride || defaultWorktreePath(root, owner, task, now));
-  // Two runs of the same job in the same second get the same name; number
-  // the later one instead of failing it.
-  if (!pathOverride && !branchOverride) {
-    const baseBranch = branch;
-    const baseTarget = target;
-    for (let n = 2; fs.existsSync(target) && n < 100; n += 1) {
-      branch = `${baseBranch}-${n}`;
-      target = `${baseTarget}-${n}`;
-    }
-  }
-  // Agent/member worktrees always cut from the mainline: honoring the
-  // launcher checkout's upstream let a dispatch inherit another session's
-  // in-progress feature branch (2026-07-09: an auth fix arrived carrying 13
-  // unpushed commits from a parallel session and could not merge).
-  const checkoutBase = normalizeTargetRef(root, mainline);
-  const shipBase = checkoutBase;
-  if (fs.existsSync(target)) throw new Error(`worktree path already exists: ${target}`);
-  // A full disk stops every flight at once. Reap first; refuse before cutting.
-  const room = checkRoomForCopy({ root, target, freeSpace, env, spaceGuard, cleanupBudget });
-  fs.mkdirSync(path.dirname(target), { recursive: true });
-  const staleBase = refreshRemoteRef(root, checkoutBase);
-  // A retry of the same job starts from the last run's unlanded commits; it
-  // still ships to the mainline.
-  let resumedFrom = (!pathOverride && !branchOverride)
-    ? lastRunBranch(root, owner, task, checkoutBase, branch)
-    : null;
-  // A last run that now conflicts with the mainline would hand its conflict
-  // to the retry, which then cannot land on the first try. Start fresh; the
-  // old branch keeps its commits.
-  let skippedResume = null;
-  if (resumedFrom && conflictsWithBase(root, checkoutBase, resumedFrom)) {
-    skippedResume = resumedFrom;
-    resumedFrom = null;
-    console.error(`note: the last run's branch ${skippedResume} no longer merges cleanly with ${checkoutBase}, so this run starts fresh; that branch keeps its commits`);
-  }
-  // A display name is not an identity: it repeats across workspaces and changes when the task list
-  // changes, so a branch under a job's older name is never a starting point and never blocks a
-  // flight. It can still be this job's own unfinished work, so say where it is and leave the choice
-  // to a person; this run goes on from the job's own name.
-  const own = slugify(task, 'task', 36);
-  for (const former of Array.isArray(formerTasks) ? formerTasks : [formerTasks]) {
-    if (!former || !String(former).trim() || slugify(former, 'task', 36) === own) continue;
-    const olderRun = lastRunBranch(root, owner, former, checkoutBase, branch);
-    if (!olderRun) continue;
-    console.error(`note: older unfinished work may be on ${olderRun}; ${resumedFrom ? `continuing from ${resumedFrom} instead` : 'starting fresh'}`);
-    break;
-  }
-  const startPoint = resumedFrom || checkoutBase;
-  const ref = `refs/heads/${branch}`;
-  const existed = runGit(['show-ref', '--verify', '--quiet', ref], { cwd: root, check: false }).status !== 1;
-  const baseCommit = runGit(['rev-parse', '--verify', `${startPoint}^{commit}`], { cwd: root, check: false });
-  const startCommit = baseCommit.status === 0 ? baseCommit.stdout.trim() : '';
-  // With no local copy the start fails on its own; only a real cut gets the warning.
-  if (staleBase && startCommit) {
-    console.error(`warning: could not refresh ${checkoutBase} (${staleBase.split('\n')[0]}); the new worktree starts from the local copy, which may be behind`);
-  }
-  const discardFailedStart = () => {
-    if (existed || !startCommit) return;
-    const registered = listWorktrees(root).find((wt) => wt.branch === branch);
-    if (registered) {
-      if (!fs.existsSync(target) || fs.realpathSync(registered.path) !== fs.realpathSync(target)
-        || registered.head !== startCommit) return;
-      const dirt = statusCounts(target, { ignoreUntracked: isConductorUntracked });
-      if (!dirt || dirt.staged || dirt.unstaged || dirt.untracked) return;
-      // No engine has started. Normal removal still refuses unexpected dirt.
-      runGit(['worktree', 'remove', target], { cwd: root });
-    }
-    if (!fs.existsSync(target)) runGit(['update-ref', '-d', ref, startCommit], { cwd: root });
-  };
-  for (let attempt = 0; attempt < 3; attempt += 1) {
-    const added = runGit(['worktree', 'add', '-b', branch, target, startPoint], { cwd: root, check: false });
-    if (added.status === 0) break;
-    // Git can create the branch before failing to write its tracking config.
-    // Drop only that untouched ref, never an existing branch or a checkout.
-    if (!/already exists|already used by worktree/i.test(added.stderr || '')) discardFailedStart();
-    if (!configLocked(added) || attempt === 2) {
-      throw new Error(String(added.stderr || added.stdout || 'worktree start failed').trim());
-    }
-    sleepSync(100 * (attempt + 1));
-  }
-  // A resumed branch takes in what the mainline gained since, or a job that
-  // keeps resuming drifts further behind every run until it clashes
-  // (2026-10-15: five long jobs sat 103 to 129 commits behind). The clash
-  // check above proved this merge is clean; if git still refuses, the run
-  // keeps the old start instead of failing.
-  if (resumedFrom) {
-    const caughtUp = runGit(['merge', '--no-edit', '-m', `Merge ${checkoutBase} into ${branch}`, checkoutBase], { cwd: target, check: false });
-    if (caughtUp.status !== 0) runGit(['merge', '--abort'], { cwd: target, check: false });
-  }
-  try {
-    runGit(['config', `branch.${branch}.atris-base`, shipBase], { cwd: target });
-    runGit(['config', `branch.${branch}.atris-owner`, owner], { cwd: target });
-    runGit(['config', `branch.${branch}.atris-task`, task], { cwd: target });
-    fs.mkdirSync(path.join(target, '.atris'), { recursive: true });
-    fs.writeFileSync(
-      path.join(target, '.atris', 'agent-worktree.json'),
-      JSON.stringify({
-        agent: agent || null,
-        member: member || null,
-        owner,
-        task,
-        branch,
-        base: shipBase,
-        checkout_base: checkoutBase,
-        resumed_from: resumedFrom,
-        skipped_resume: skippedResume,
-        workspace_root: root,
-        created_at: now.toISOString(),
-      }, null, 2) + '\n',
-      'utf8'
-    );
-  } catch (error) {
-    discardFailedStart();
-    throw error;
-  }
-  const seedDeps = deps !== false && env.ATRIS_WORKTREE_NO_DEP_CLONE !== '1' && (deps ?? !space.isScratchPath(target));
-  const depsResult = seedDeps ? seedCopyDeps({ root, target, options: deps && typeof deps === 'object' ? deps : {} }) : null;
-  return { path: target, branch, base: shipBase, checkoutBase, resumedFrom, skippedResume, owner, reapedBeforeStart, cachePrunedBeforeStart, space: room, deps: depsResult };
-}
-
-// node_modules as a clone of a matching install (see lib/worktree-space.js),
-// so a web copy costs 12 MB and 2 seconds instead of npm ci.
-function seedCopyDeps({ root, target, options = {} }) {
-  try {
-    const primaryRoot = findPrimaryRoot(root);
-    return space.seedNodeModules({
-      target,
-      workspace: path.dirname(primaryRoot),
-      repoName: path.basename(primaryRoot),
-      sources: [primaryRoot, ...listWorktrees(root).map((wt) => wt.path)],
-      isIgnored: (dir) => runGit(['check-ignore', '-q', '--', 'node_modules/'], { cwd: dir, check: false }).status === 0,
-      ...options,
-    });
-  } catch (error) {
-    return { status: 'skipped', reason: `could not clone installs: ${String((error && error.message) || error)}` };
-  }
-}
-
-// When the disk runs low, reaps finished copies of every repo in the
-// workspace (merged, clean, nothing running inside, past the fresh-copy
-// grace). Below the floor it refuses with ATRIS_LOW_DISK, before any copy
-// is cut. Limits: ATRIS_WORKTREE_REAP_BELOW_GB, ATRIS_WORKTREE_MIN_FREE_GB.
-// Even when the disk is low, a copy touched in the last ten minutes stays:
-// the engine that just finished may still have its last message unread.
-const LOW_DISK_IDLE_MS = 10 * 60 * 1000;
-
-function ensureRoomForCopy({ root, target, freeSpace = space.freeBytes, env = process.env, by = 'atris worktree start', cleanupBudget = null }) {
-  const limits = space.spaceLimits(env);
-  const before = freeSpace(target);
-  const room = { before, free: before, removed: [], cleared: [], ...limits };
-  if (typeof before !== 'number' || !Number.isFinite(before)) return room;
-  if (before >= limits.reapBelow && before >= limits.refuseBelow) return room;
-  const swept = sweepWorkspace({ workspace: path.dirname(findPrimaryRoot(root)), apply: true, idleMs: LOW_DISK_IDLE_MS, freeSpace, by, cleanupBudget });
-  for (const repo of swept.repos) {
-    room.removed.push(...(repo.removed || []));
-    room.cleared.push(...(repo.cachePruned || []));
-  }
-  const after = freeSpace(target);
-  room.free = typeof after === 'number' && Number.isFinite(after) ? after : before;
-  if (limits.refuseBelow > 0 && room.free < limits.refuseBelow) {
-    const count = room.removed.length;
-    const reaped = count
-      ? `Removed ${count} finished build ${count === 1 ? 'copy' : 'copies'} first, and that was not enough.`
-      : 'No finished build copies were safe to remove.';
-    const error = new Error(
-      `only ${space.formatGb(room.free)} free on this disk, and a new build copy needs at least ${space.formatGb(limits.refuseBelow)}. ${reaped} `
-      + 'Free some space and retry; `atris worktree sweep` shows what is left, and ATRIS_WORKTREE_MIN_FREE_GB=0 skips this check.'
-    );
-    error.code = 'ATRIS_LOW_DISK';
-    error.space = room;
-    throw error;
-  }
-  return room;
-}
-
-// When the disk is checked before a copy is cut: spaceGuard says so, else anywhere but a temp folder.
-function checkRoomForCopy({ root, target, freeSpace, env, spaceGuard, cleanupBudget = null }) {
-  return (spaceGuard ?? !space.isScratchPath(target))
-    ? ensureRoomForCopy({ root, target, freeSpace, env, cleanupBudget })
-    : null;
-}
-
-// The question worktree start asks about the disk, asked on its own so a flight can ask it once before it
-// claims anything: the same floor, the same reaping of finished copies, the same words. null when there is
-// room, when the disk cannot be read, or when a copy would land in a temp folder. Otherwise the sentence
-// worktree start would refuse with, and the numbers behind it. Any other trouble is left for worktree start
-// to report when it runs. target names the folder the build will use when it is not worktree start's usual
-// one (a sealed review sandbox is cut in the temp folder).
-function lowDiskRefusal({ root = repoRoot(), member = '', agent = '', task = 'flight', now = new Date(), env = process.env, freeSpace = space.freeBytes, spaceGuard, target = '' } = {}) {
-  try {
-    checkRoomForCopy({ root, target: target ? path.resolve(target) : path.resolve(defaultWorktreePath(root, member || agent, task, now)), freeSpace, env, spaceGuard });
-    return null;
-  } catch (error) {
-    if (!error || error.code !== 'ATRIS_LOW_DISK') return null;
-    return { message: error.message, free: error.space.free, needs: error.space.refuseBelow };
-  }
-}
-
 function startWorktree(args) {
   const root = repoRoot();
   const member = readFlag(args, '--member');
@@ -807,8 +101,6 @@ function startWorktree(args) {
     console.error('Usage: atris worktree start --member <member>|--agent <name> --task "<short task>" [--former-task "<older name of the task>"] [--claim] [--force] [--no-deps]');
     return 2;
   }
-  // The task's older name, when it has gone by one. It is only mentioned: an unfinished branch under
-  // it is named in one line, never resumed and never a collision (see createAgentWorktree).
   const formerTask = readFlag(args, '--former-task');
   const memberFile = member ? path.join(root, 'atris', 'team', member, 'MEMBER.md') : '';
   if (memberFile && !fs.existsSync(memberFile)) {
@@ -890,56 +182,6 @@ function startWorktree(args) {
   return 0;
 }
 
-function createOrFindPr(root, branch, targetRef, title, dryRun) {
-  const targetBranch = baseBranchName(targetRef);
-  // `gh pr view` (no --state filter) returns ANY PR for this branch name,
-  // including one already MERGED or CLOSED. A worktree branch that ships
-  // more than once (this same branch, more commits, another `worktree ship`)
-  // would then reuse the dead PR number: `gh pr merge <dead pr> --merge`
-  // exits 0 with just a warning (never fails), so the new commits silently
-  // never land while the ship command still reports success. Only reuse a
-  // PR that is still OPEN; anything else gets a fresh one.
-  const existing = spawnSync('gh', ['pr', 'view', '--json', 'number,url,state', '--jq', '"\\(.number) \\(.url) \\(.state)"'], {
-    cwd: root,
-    encoding: 'utf8',
-  });
-  if (existing.status === 0 && existing.stdout.trim()) {
-    const parts = existing.stdout.trim().split(/\s+/);
-    const state = parts.pop();
-    if (state === 'OPEN') return parts.join(' ');
-  }
-  const body = [
-    'Automated Atris worktree ship.',
-    '',
-    `Branch: ${branch}`,
-    `Target: ${targetBranch}`,
-  ].join('\n');
-  if (dryRun) return `dry-run: gh pr create --base ${targetBranch} --head ${branch}`;
-  // An engine that produced nothing leaves a branch level with its base. Asking
-  // GitHub for a PR there fails with "No commits between ...", and that throw used
-  // to escape the flight and abort the whole run. Say it plainly instead.
-  const ahead = runGit(['rev-list', '--count', `${targetRef}..HEAD`], { cwd: root, check: false });
-  if (ahead.status === 0 && String(ahead.stdout || '').trim() === '0') {
-    console.log('pr: skipped (no commits ahead of base)');
-    return '';
-  }
-  const created = spawnSync(
-    'gh',
-    ['pr', 'create', '--base', targetBranch, '--head', branch, '--title', title, '--body', body],
-    { cwd: root, encoding: 'utf8' }
-  );
-  if (created.status !== 0) {
-    throw new Error((created.stderr || created.stdout || 'gh pr create failed').trim());
-  }
-  return created.stdout.trim();
-}
-
-function prMergeRef(prOutput) {
-  const text = String(prOutput || '').trim();
-  if (!text || text.startsWith('dry-run:')) return '';
-  return text.split(/\s+/)[0];
-}
-
 function shipHelp() {
   console.log('Usage: atris worktree ship --message "<commit>" --verify "<cmd>" [--merge] [--target <ref>] [--local]');
   console.log('');
@@ -952,167 +194,6 @@ function shipHelp() {
   console.log('  recommended flight verify: npm run test:fast && node --test <focused files>');
 }
 
-function deniedLaneForShip(root, branch, message) {
-  try {
-    const { protectedLaneOfTask } = require('../lib/fleet');
-    const refs = new Set();
-    for (const source of [String(branch || ''), String(message || '')]) {
-      for (const m of source.toUpperCase().matchAll(/([A-Z]{2,6}-\d+)/g)) refs.add(m[1]);
-      for (const m of source.toLowerCase().matchAll(/([a-z]{2,6})-(\d+)/g)) refs.add(`${m[1].toUpperCase()}-${m[2]}`);
-    }
-    // A flight's branch names its job by row id, lowercased, not by the display id a person reads
-    // (flightTaskName in lib/fleet.js), so a branch also finds a job by its row id as a whole word.
-    const words = new Set(String(branch || '').toLowerCase().split(/[^a-z0-9]+/).filter(Boolean));
-    const projectionPath = path.join(findPrimaryRoot(root), '.atris', 'state', 'tasks.projection.json');
-    if (!fs.existsSync(projectionPath)) return null;
-    const projection = JSON.parse(fs.readFileSync(projectionPath, 'utf8'));
-    for (const task of projection.tasks || []) {
-      const ids = [task.display_id, task.legacy_ref].filter(Boolean).map(v => String(v).toUpperCase());
-      // Only a real row id counts: a short or odd one could match any word in a branch name.
-      const rowId = typeof task.id === 'string' && /^[A-Za-z0-9]{16,}$/.test(task.id) ? task.id.toLowerCase() : '';
-      if (!ids.some(id => refs.has(id)) && !(rowId && words.has(rowId))) continue;
-      const hit = protectedLaneOfTask(task);
-      if (hit) return { taskId: ids[0] || task.id, tag: hit };
-    }
-    return null;
-  } catch {
-    return null;
-  }
-}
-
-// Pushing a protected-lane branch for review lands nothing, unless the branch
-// already has a pull request with GitHub auto-merge on: that request merges
-// itself the moment its checks pass, and the push is what feeds it. A branch
-// that shipped earlier with --merge and was retagged into a protected lane since
-// would land with no person. One branch can have several open pull requests (one
-// per base), and a single push feeds every one of them, so this asks for the whole
-// list: `gh pr view` shows just one, and it may be the one without auto-merge.
-// Returns the words to refuse with, or '' when the push is safe. It fails closed:
-// if gh cannot say, or the list may be incomplete, nothing is pushed.
-const OPEN_PR_LIST_LIMIT = 100;
-
-function protectedPushRefusal(root, branch, run = spawnSync) {
-  const unknown = (why) => `blocked: cannot tell whether ${branch} has a pull request with auto-merge on (${why}); nothing was pushed`;
-  // A minute is plenty for one lookup; a gh that hangs must not hang the ship.
-  const listed = run('gh', [
-    'pr', 'list', '--head', branch, '--state', 'open',
-    '--json', 'number,url,baseRefName,autoMergeRequest',
-    '--limit', String(OPEN_PR_LIST_LIMIT),
-  ], { cwd: root, encoding: 'utf8', timeout: 60000 });
-  if (listed.error) {
-    return unknown(listed.error.code === 'ETIMEDOUT' ? 'gh took longer than a minute to answer' : `gh did not run: ${listed.error.message}`);
-  }
-  if (listed.status !== 0) {
-    // No branch has an empty answer to read as "none": an empty list is an
-    // exit 0, so a failed lookup is never taken for a clear.
-    const said = `${listed.stderr || ''}\n${listed.stdout || ''}`;
-    const firstLine = said.split(/\r?\n/).map((line) => line.trim()).find(Boolean);
-    return unknown(firstLine || `gh exited ${listed.status}`);
-  }
-  let open;
-  try { open = JSON.parse(String(listed.stdout || '')); } catch { open = null; }
-  // Every entry must say whether auto-merge is on (null means off), or the
-  // answer is not one this check can lean on.
-  const readable = Array.isArray(open)
-    && open.every((pr) => pr && typeof pr === 'object' && !Array.isArray(pr) && Object.prototype.hasOwnProperty.call(pr, 'autoMergeRequest'));
-  if (!readable) return unknown("gh's answer could not be read");
-  // gh stops at its limit without saying so: a full page may be only part of the list.
-  if (open.length >= OPEN_PR_LIST_LIMIT) return unknown(`${open.length} open pull requests may have been cut short`);
-  const armed = open.filter((pr) => pr.autoMergeRequest);
-  if (!armed.length) return '';
-  const name = (pr) => `${pr.url || (pr.number ? `#${pr.number}` : branch)}${pr.baseRefName ? ` (into ${pr.baseRefName})` : ''}`;
-  const off = (pr) => `gh pr merge ${pr.number || pr.url || branch} --disable-auto`;
-  if (armed.length === 1) {
-    return `blocked: pull request ${name(armed[0])} has auto-merge on, so pushing ${branch} would land it with no person; turn auto-merge off first (${off(armed[0])}), then ship again`;
-  }
-  const names = armed.map(name);
-  return `blocked: pull requests ${names.slice(0, -1).join(', ')} and ${names[names.length - 1]} have auto-merge on, so pushing ${branch} would land them with no person; turn auto-merge off on each first (${armed.map(off).join(', ')}), then ship again`;
-}
-
-function findPrimaryRoot(root) {
-  const worktrees = listWorktrees(root);
-  return worktrees[0]?.path || root;
-}
-
-function shellQuote(value) {
-  const text = String(value || '');
-  if (/^[A-Za-z0-9_./:@+-]+$/.test(text)) return text;
-  return `'${text.replace(/'/g, `'"'"'`)}'`;
-}
-
-function experimentHealthProbe(statePath) {
-  const script = [
-    "const fs=require('fs')",
-    'const state=JSON.parse(fs.readFileSync(process.argv[1],\'utf8\'))',
-    'const last=Date.parse(state.last_run_date)',
-    `process.exit(Number.isFinite(last)&&Date.now()-last<=${DAY_MS}?0:1)`,
-  ].join(';');
-  return `${shellQuote(process.execPath)} -e ${shellQuote(script)} ${shellQuote(statePath)}`;
-}
-
-function runShipHealthCheck(workspaceRoot, options = {}) {
-  try {
-    const now = options.now ? new Date(options.now) : new Date();
-    const statePath = path.join(workspaceRoot, '.atris', 'state', 'experiments-daily.json');
-    const state = fs.existsSync(statePath)
-      ? JSON.parse(fs.readFileSync(statePath, 'utf8'))
-      : {};
-    const rawLastRunDate = state && state.last_run_date;
-    const lastRunMs = rawLastRunDate ? Date.parse(rawLastRunDate) : null;
-    if (rawLastRunDate && !Number.isFinite(lastRunMs)) {
-      throw new Error('experiment state date is unreadable');
-    }
-
-    const ageMs = Number.isFinite(lastRunMs) ? now.getTime() - lastRunMs : null;
-    if (ageMs !== null && ageMs <= DAY_MS) return { healthy: true, filed: false };
-
-    const days = ageMs === null ? 1 : Math.max(1, Math.floor(ageMs / DAY_MS));
-    console.log(`health check failed: no verified experiment in ${days} days. shipping still works, the metabolism does not.`);
-    const filed = close.upsertSourceFlag({
-      what: 'no verified experiment has run in over a day',
-      owner: 'operator',
-      lane: 'code',
-      ttlDays: 1,
-      source: SHIP_HEALTH_SOURCE,
-      closeCondition: 'a verified experiment ran within 24 hours',
-      probe: experimentHealthProbe(statePath),
-    }, workspaceRoot, { now });
-    return { healthy: false, ...filed };
-  } catch (error) {
-    console.log(`health check skipped: ${String(error && error.message || error).toLowerCase()}. shipping still works.`);
-    return { healthy: null, filed: false, error };
-  }
-}
-
-const MAP_REFRESH_COMMIT_MESSAGE = 'Refresh map references that moved';
-const MAP_REFRESH_TRAILER = 'Co-authored-by: Atris <299057014+atris-builder[bot]@users.noreply.github.com>';
-
-// Rewrites map line refs whose code moved (the same fix `atris doc-health
-// --fix-refs` applies), then commits only the rewritten map files. A human-only
-// remainder or an error never blocks the ship; pass --no-map-refresh to skip.
-function refreshMovedMapRefs(root, args = []) {
-  if (hasFlag(args, '--no-map-refresh')) return { skipped: true, refreshed: 0, left: 0 };
-  try {
-    const { changes, left } = fixMapDocs(root);
-    if (changes.length) {
-      const docs = [...new Set(changes.map(change => change.doc))];
-      runGit(['add', '--', ...docs], { cwd: root });
-      runGit(['commit', '-m', MAP_REFRESH_COMMIT_MESSAGE, '-m', MAP_REFRESH_TRAILER], { cwd: root });
-      console.log(`map: refreshed ${changes.length} moved references`);
-    } else {
-      console.log('map: references current');
-    }
-    if (left.length) {
-      console.log(`map: ${left.length} references need a human; run atris doc-health --fix-refs to see them`);
-    }
-    return { skipped: false, refreshed: changes.length, left: left.length };
-  } catch (error) {
-    const message = String((error && error.message) || error).toLowerCase().replace(/\s+/g, ' ').trim();
-    console.log(`map: refresh skipped (${message}); the ship continues`);
-    return { skipped: false, refreshed: 0, left: 0, error };
-  }
-}
-
 function shipWorktree(args) {
   if (hasFlag(args, '--help') || hasFlag(args, '-h') || args[0] === 'help') {
     shipHelp();
@@ -1146,13 +227,6 @@ function shipWorktree(args) {
     console.error('blocked: ship from an isolated worktree, not the primary checkout');
     return 2;
   }
-  // Denied lanes are checked at dispatch, but a flight that was staffed
-  // before a task entered a denied lane (or killed mid-flight) could still
-  // ship: a payments command self-landed twice this way on 2026-07-26. The
-  // ship gate is the last door, so it re-checks. It guards landing only:
-  // pushing the branch and opening a pull request lands nothing, and that is
-  // how protected work reaches a person to review. The one exception is a
-  // pull request that already has auto-merge on, which a push would feed.
   if (!hasFlag(args, '--allow-denied-lane')) {
     const denied = deniedLaneForShip(root, branch, message);
     if (denied && (merge || localMode)) {
@@ -1186,8 +260,6 @@ function shipWorktree(args) {
   refreshRemoteRef(root, targetRef);
   const skippedAdapters = restoreRegeneratedAdapterChurn(root, message, { dryRun });
   const ignoredUnstagedFiles = dryRun ? new Set(skippedAdapters) : new Set();
-  // Conductor plumbing must not make the checkout look dirty, or a flight where the
-  // engine wrote nothing commits the fleet's own prompt file and calls it work.
   const counts = statusCounts(root, { ignoredUnstagedFiles, ignoreUntracked: isConductorUntracked })
     || { staged: 0, unstaged: 0, untracked: 0 };
   const dirty = counts.staged || counts.unstaged || counts.untracked;
@@ -1200,8 +272,6 @@ function shipWorktree(args) {
     console.log(`commit: ${message}`);
     if (!dryRun) {
       runGit(['add', '-A'], { cwd: root });
-      // `add -A` sweeps in the fleet's own prompt file and friends. Drop them from the
-      // index so a work commit carries work, not harness plumbing. Safe when absent.
       unstageConductorArtifacts(root);
       if (!proofTreeMatches('index')) return 3;
       runGit(['commit', '-m', message], { cwd: root });
@@ -1224,8 +294,6 @@ function shipWorktree(args) {
     if (!dryRun) runCommand(verify, { cwd: root });
     const afterVerifyRows = dryRun ? [] : statusSnapshot(root);
     const verifyDelta = newStatusRows(beforeVerify, afterVerifyRows);
-    // This check exists to catch a verifier that writes files. Conductor plumbing was
-    // already present before the verifier ran, so counting it here blocks a clean ship.
     const afterVerify = dryRun
       ? { staged: 0, unstaged: 0, untracked: 0 }
       : statusCounts(root, { ignoreUntracked: isConductorUntracked })
@@ -1255,7 +323,6 @@ function shipWorktree(args) {
   }
   console.log(`merge_check: ${targetRef} clean`);
 
-  // Set once the change is confirmed merged; the build copy then goes away.
   let landedOn = '';
   if (localMode) {
     console.log('push: skipped (local mode)');
@@ -1305,13 +372,9 @@ function shipWorktree(args) {
         mergeArgs.push('--merge');
         const merged = mergePrWithRetry(mergeArgs, root);
         if (merged.status !== 0) throw new Error((merged.stderr || merged.stdout || 'gh pr merge failed').trim());
-        // `gh pr merge` on an already-merged PR exits 0 with a warning
-        // instead of failing, which would otherwise report a false landing.
         if (/already merged/i.test(`${merged.stdout}${merged.stderr}`)) {
           throw new Error(`gh pr merge reported the PR was already merged (stale PR reused): ${(merged.stdout || merged.stderr).trim()}`);
         }
-        // A merge queue accepts the request before merging. Deleting its head
-        // here closes the PR and cancels that request, so confirm the outcome.
         const confirmation = spawnSync('gh', ['pr', 'view', mergeRef, '--json', 'state,mergedAt,number,url,mergeCommit'], { cwd: root, encoding: 'utf8' });
         if (confirmation.status !== 0) {
           throw new Error('could not confirm the merge; the source branch was kept');
@@ -1328,8 +391,6 @@ function shipWorktree(args) {
           throw new Error('the change was not merged; the source branch was kept');
         }
         console.log('merge: merged');
-        // One machine-readable line, so a caller can save which pull request
-        // and commit landed. The rating only counts a landing it can point at.
         const record = shipMergeRecord(state);
         if (record) console.log(`merge: record ${JSON.stringify(record)}`);
         landedOn = targetRef;
@@ -1358,90 +419,6 @@ function shipWorktree(args) {
   return 0;
 }
 
-// A shipped build copy is dead weight, but the engine that shipped it is
-// still inside and writes its last message there on exit. A detached
-// `atris worktree reap-shipped` waits until nothing has run in the copy for
-// SHIP_SETTLE_MS, then removes it if it is still merged and clean.
-const SHIP_SETTLE_MS = 10 * 60 * 1000;
-const SHIP_REAP_POLL_MS = 60 * 1000;
-const SHIP_REAP_GIVE_UP_MS = 6 * 60 * 60 * 1000;
-// Right after a merge the local copy of the target can lag; allow a short
-// wait before treating the copy as unmerged and leaving it for the sweep.
-const SHIP_REAP_UNMERGED_GRACE_MS = 15 * 60 * 1000;
-// Reasons that can clear on their own: someone is still inside, or the
-// main branch moved or could not be reached during the check.
-const SHIP_REAP_RETRY_REASONS = new Set([
-  'active_process', 'process_scan_failed', 'recent_activity', 'base_refresh_failed', 'base_unverified',
-  'ignored_scan_failed', 'changed_or_active_during_verification',
-]);
-
-function shippedCopyRemovalPlan({ root, primary, env = process.env, atrisBin = ATRIS_BIN }) {
-  const copy = path.resolve(root);
-  if (env.ATRIS_WORKTREE_KEEP_AFTER_SHIP === '1') return { skip: 'ATRIS_WORKTREE_KEEP_AFTER_SHIP=1', announce: true };
-  if (!primary || canonicalPath(copy) === canonicalPath(primary)) return { skip: 'primary checkout' };
-  if (!space.isAgentCopyPath(copy)) return { skip: 'not an agent build copy' };
-  if (space.isScratchPath(copy)) return { skip: 'temp folder' };
-  // The removal runs this same atris; one that lives in the copy would delete itself.
-  if (space.isInside(atrisBin, copy)) return { skip: 'this atris runs from inside the copy', announce: true };
-  return { copy };
-}
-
-function scheduleShippedCopyRemoval({ root, primary, branch, base, env = process.env, spawnProcess = spawn }) {
-  const plan = shippedCopyRemovalPlan({ root, primary, env });
-  if (plan.skip) return plan;
-  try {
-    // The copy rides in the environment, not the arguments, so the process
-    // scan does not count this waiter as someone working in the copy.
-    const child = spawnProcess(process.execPath, [ATRIS_BIN, 'worktree', 'reap-shipped'], {
-      cwd: primary,
-      detached: true,
-      stdio: 'ignore',
-      env: { ...env, ATRIS_SKIP_UPDATE_CHECK: '1', ATRIS_REAP_WORKTREE: plan.copy, ATRIS_REAP_BRANCH: branch || '', ATRIS_REAP_BASE: base || '' },
-    });
-    if (child && typeof child.on === 'function') child.on('error', () => {});
-    if (child && typeof child.unref === 'function') child.unref();
-    return { ...plan, scheduled: true };
-  } catch (error) {
-    return { skip: `could not start the removal: ${String((error && error.message) || error)}`, announce: true };
-  }
-}
-
-function announceShippedCopyRemoval(plan) {
-  if (plan.scheduled) {
-    console.log(`cleanup: this build copy is removed once nothing has run in it for ${Math.round(SHIP_SETTLE_MS / 60000)} minutes`);
-  } else if (plan.announce) {
-    console.log(`cleanup: kept this build copy (${plan.skip})`);
-  }
-}
-
-function reapShippedCopy({
-  root,
-  target,
-  base = '',
-  settleMs = SHIP_SETTLE_MS,
-  pollMs = SHIP_REAP_POLL_MS,
-  giveUpMs = SHIP_REAP_GIVE_UP_MS,
-  unmergedGraceMs = SHIP_REAP_UNMERGED_GRACE_MS,
-  sleep = sleepSync,
-  clock = Date.now,
-  cleanup: cleanupFn = cleanupWorktrees,
-} = {}) {
-  const startedAt = clock();
-  sleep(settleMs);
-  for (;;) {
-    const result = cleanupFn({
-      root, base, apply: true, onlyPaths: [target], freshGraceMs: 0, idleMs: settleMs, by: 'atris worktree ship', now: clock(),
-    });
-    if (result.removed.length) return { removed: true, reason: result.removed[0].reason };
-    const entry = result.kept.find((item) => canonicalPath(item.path) === canonicalPath(target));
-    if (!entry) return { removed: false, reason: 'not_registered' };
-    const waited = clock() - startedAt;
-    const retry = SHIP_REAP_RETRY_REASONS.has(entry.reason) || (entry.reason === 'unmerged' && waited < unmergedGraceMs);
-    if (!retry || waited >= giveUpMs) return { removed: false, reason: entry.reason };
-    sleep(pollMs);
-  }
-}
-
 function reapShipped() {
   const target = process.env.ATRIS_REAP_WORKTREE || '';
   if (!target) {
@@ -1453,17 +430,6 @@ function reapShipped() {
   return result.removed ? 0 : 1;
 }
 
-// The landed pull request from `gh pr view --json`, or null without a merge commit.
-function shipMergeRecord(state) {
-  const commit = state && state.mergeCommit && typeof state.mergeCommit === 'object' ? state.mergeCommit.oid : null;
-  if (typeof commit !== 'string' || !/^[0-9a-f]{7,64}$/i.test(commit)) return null;
-  const record = { merge_commit: commit };
-  if (Number.isInteger(state.number) && state.number > 0) record.number = state.number;
-  if (typeof state.url === 'string' && state.url) record.url = state.url;
-  if (typeof state.mergedAt === 'string' && state.mergedAt) record.merged_at = state.mergedAt;
-  return record;
-}
-
 function guard(args) {
   const root = repoRoot();
   const worktrees = listWorktrees(root);
@@ -1473,9 +439,6 @@ function guard(args) {
     console.error('run: atris worktree start --member <member>|--agent <name> --task "<short task>" --claim');
     return 2;
   }
-  // Conductor plumbing (worktree metadata, the fleet prompt written for this very
-  // engine, runtime scratch, the brief ledger) must not count as dirt, otherwise the
-  // harness blocks the engine with the harness's own files.
   const counts = statusCounts(root, { ignoreUntracked: isConductorUntracked });
   if (counts && (counts.staged || counts.unstaged || counts.untracked) && !hasFlag(args, '--allow-dirty')) {
     console.error(`blocked: checkout is dirty staged=${counts.staged} unstaged=${counts.unstaged} untracked=${counts.untracked}`);
@@ -1494,503 +457,6 @@ function prune(args) {
   return result.status || 0;
 }
 
-const PROTECTED_BRANCHES = new Set(['main', 'master']);
-
-// A worktree fresh off `worktree start` is merged into base by definition
-// (zero commits yet), so without a grace window the janitor reaps it while
-// the engine that requested it is still booting inside.
-const WORKTREE_REAP_GRACE_MS = 60 * 60 * 1000;
-const GENERATED_WORKTREE_CACHE_DIRS = [
-  '.derivedData',
-  '.next',
-  '.swiftpm',
-  '.cache/swiftpm',
-  'node_modules/.cache',
-];
-
-function worktreeWithinReapGrace(worktreePath, now = Date.now(), graceMs = WORKTREE_REAP_GRACE_MS) {
-  try {
-    return now - fs.statSync(worktreePath).mtimeMs < graceMs;
-  } catch {
-    return false;
-  }
-}
-
-// Newest sign of work in a copy: its folder, its branch tip and reflog, web
-// build output, and the engine's last message. The index is left out on
-// purpose: a plain `git status` rewrites it.
-function lastCopyActivityMs(worktreePath) {
-  const marks = [worktreePath, path.join(worktreePath, '.next'), path.join(worktreePath, '.codex-last-message.txt')];
-  try {
-    const pointer = /^gitdir:\s*(.+)$/m.exec(fs.readFileSync(path.join(worktreePath, '.git'), 'utf8'));
-    if (pointer) {
-      const gitDir = path.resolve(worktreePath, pointer[1].trim());
-      marks.push(path.join(gitDir, 'HEAD'), path.join(gitDir, 'logs', 'HEAD'));
-    }
-  } catch {}
-  let newest = 0;
-  for (const mark of marks) {
-    try {
-      newest = Math.max(newest, fs.statSync(mark).mtimeMs);
-    } catch {}
-  }
-  return newest;
-}
-
-function canonicalPath(value) {
-  try {
-    return fs.realpathSync(value);
-  } catch {
-    return path.resolve(value);
-  }
-}
-
-// null means the scan failed: we cannot tell who is inside, so callers keep
-// every folder. An empty list would read as "nobody is here" and delete.
-function listActiveProcessFiles() {
-  const result = spawnSync('lsof', ['-n', '-F', 'n'], {
-    encoding: 'utf8',
-    maxBuffer: COMMAND_MAX_BUFFER_BYTES,
-    timeout: 20000,
-    killSignal: 'SIGKILL',
-  });
-  if (result.error || result.status !== 0 || String(result.stderr || '').trim()) return null;
-  const paths = String(result.stdout || '')
-    .split(/\r?\n/)
-    .filter((line) => line.startsWith('n/'))
-    .map((line) => canonicalPath(line.slice(1)))
-    .filter(Boolean);
-  return paths.length ? paths : null;
-}
-
-// Absolute paths named on each program's command line, including flag values
-// like --require=/x.js. A program can run a script from a work folder while
-// its current folder is elsewhere; the folder scan alone misses it. The list
-// prints arguments unquoted, so a path with a space is also kept as the rest
-// of the line from where it starts; the folder match is a prefix check.
-function parseProcessArgPaths(psOutput) {
-  const paths = new Set();
-  const starts = /(?:^|\s)(?:[^\s=]*=)?(?=\/)/g;
-  for (const raw of String(psOutput || '').split(/\r?\n/)) {
-    const line = raw.trim();
-    for (const match of line.matchAll(starts)) {
-      const rest = line.slice(match.index + match[0].length);
-      const token = rest.split(/\s/, 1)[0];
-      if (token.length > 1) paths.add(token);
-      if (rest.length > token.length) paths.add(rest);
-    }
-  }
-  return [...paths];
-}
-
-function listActiveProcessArgPaths() {
-  const result = spawnSync('ps', ['-axww', '-o', 'args='], {
-    encoding: 'utf8',
-    maxBuffer: COMMAND_MAX_BUFFER_BYTES,
-    timeout: 5000,
-    killSignal: 'SIGKILL',
-  });
-  if (result.error || result.status !== 0) return null;
-  return parseProcessArgPaths(result.stdout);
-}
-
-// Open files and working folders, plus script paths on command lines.
-function listActiveProcessPaths() {
-  const files = listActiveProcessFiles();
-  if (!Array.isArray(files)) return null;
-  const args = listActiveProcessArgPaths();
-  if (!Array.isArray(args)) return null;
-  return files.concat(args);
-}
-
-function worktreeHasActiveProcess(worktreePath, activeCwds) {
-  if (!Array.isArray(activeCwds)) return true;
-  const resolved = canonicalPath(worktreePath);
-  const prefix = `${resolved}${path.sep}`;
-  return activeCwds.some((cwd) => {
-    const active = canonicalPath(cwd);
-    return active === resolved || active.startsWith(prefix);
-  });
-}
-
-// Every work-folder removal leaves one line naming who removed it and why, in
-// the main checkout's state so the line outlives the folder it describes.
-function recordWorktreeRemoval(root, { path: removedPath, branch = '', by, reason }) {
-  try {
-    const common = runGit(['rev-parse', '--path-format=absolute', '--git-common-dir'], { cwd: root, check: false });
-    const main = common.status === 0 ? path.dirname(common.stdout.trim()) : root;
-    const file = path.join(main, '.atris', 'state', 'worktree_removals.jsonl');
-    fs.mkdirSync(path.dirname(file), { recursive: true });
-    fs.appendFileSync(file, `${JSON.stringify({
-      at: new Date().toISOString(), path: removedPath, branch: branch || null, by, reason, pid: process.pid,
-    })}\n`);
-  } catch {}
-}
-
-// Only webpack's disposable pack files have a sufficiently narrow contract
-// for unattended cleanup. Unknown files or links turn the folder into review.
-function webpackCacheSnapshot(worktreePath) {
-  try {
-    const root = fs.realpathSync(worktreePath);
-    let current = root;
-    for (const part of ['.next', 'cache', 'webpack']) {
-      current = path.join(current, part);
-      const stat = fs.lstatSync(current);
-      if (!stat.isDirectory() || stat.isSymbolicLink()) return null;
-    }
-    if (fs.realpathSync(current) !== current) return null;
-    const entries = [];
-    function walk(dir) {
-      for (const name of fs.readdirSync(dir).sort()) {
-        const file = path.join(dir, name);
-        const stat = fs.lstatSync(file);
-        if (stat.isSymbolicLink()) return false;
-        if (stat.isDirectory()) {
-          entries.push([file, 'd', stat.ino, stat.mtimeMs]);
-          if (!walk(file)) return false;
-        } else if (stat.isFile() && /^(?:index|\d+)\.pack(?:\.gz|\.old)?$/.test(name)) {
-          entries.push([file, 'f', stat.ino, stat.size, stat.mtimeMs]);
-        } else return false;
-      }
-      return true;
-    }
-    if (!walk(current)) return null;
-    const size = spawnSync('du', ['-sk', current], { encoding: 'utf8', timeout: 5000, killSignal: 'SIGKILL' });
-    const match = size.status === 0 && String(size.stdout || '').match(/^(\d+)\s/);
-    if (!match) return null;
-    return { path: current, kib: Number(match[1]), fingerprint: JSON.stringify(entries) };
-  } catch {
-    return null;
-  }
-}
-
-function pruneGeneratedWorktreeCaches(worktreePath, { apply = false, budget } = {}) {
-  const candidates = [];
-  const pruned = [];
-  for (const relative of GENERATED_WORKTREE_CACHE_DIRS) {
-    const target = path.join(worktreePath, relative);
-    if (!fs.existsSync(target)) continue;
-    const ignored = runGit(['check-ignore', '-q', '--', relative], { cwd: worktreePath, check: false });
-    if (ignored.status !== 0) continue;
-    const item = { worktree: worktreePath, path: target, relative, reason: 'manual_review_required' };
-    candidates.push(item);
-  }
-  const relative = '.next/cache/webpack';
-  const ignored = runGit(['check-ignore', '-q', '--', relative], { cwd: worktreePath, check: false });
-  const snapshot = ignored.status === 0 ? webpackCacheSnapshot(worktreePath) : null;
-  if (snapshot) {
-    const item = { worktree: worktreePath, path: snapshot.path, relative, kib: snapshot.kib, reason: 'generated_webpack_cache' };
-    candidates.push(item);
-    if (apply && budget && budget.count < 20 && budget.kib + snapshot.kib <= 10 * 1024 * 1024) {
-      const active = listActiveProcessPaths();
-      const fresh = webpackCacheSnapshot(worktreePath);
-      const stillIgnored = runGit(['check-ignore', '-q', '--', relative], { cwd: worktreePath, check: false });
-      if (Array.isArray(active) && !worktreeHasActiveProcess(worktreePath, active)
-          && stillIgnored.status === 0 && fresh && fresh.path === snapshot.path
-          && fresh.kib === snapshot.kib && fresh.fingerprint === snapshot.fingerprint) {
-        try {
-          fs.rmSync(snapshot.path, { recursive: true });
-          budget.count += 1;
-          budget.kib += snapshot.kib;
-          pruned.push(item);
-        } catch (error) {
-          item.error = String((error && error.message) || error);
-        }
-      }
-    }
-  }
-  return { candidates, pruned };
-}
-
-function originBaseIsCurrent(root, base) {
-  const prefix = base.startsWith('origin/') ? 'origin/'
-    : base.startsWith('refs/remotes/origin/') ? 'refs/remotes/origin/' : '';
-  if (!prefix) {
-    if (base === 'HEAD') {
-      const branch = runGit(['symbolic-ref', '--short', 'HEAD'], { cwd: root, check: false });
-      return branch.status === 0 && PROTECTED_BRANCHES.has(branch.stdout.trim());
-    }
-    return PROTECTED_BRANCHES.has(base.replace(/^refs\/heads\//, ''));
-  }
-  const branch = base.slice(prefix.length);
-  const local = runGit(['rev-parse', '--verify', base], { cwd: root, check: false });
-  const remote = runGit(['ls-remote', '--exit-code', 'origin', `refs/heads/${branch}`], { cwd: root, check: false, timeout: 5000 });
-  const match = String(remote.stdout || '').match(/^([a-f0-9]{40,64})\s+(refs\/heads\/[^\r\n]+)$/m);
-  return local.status === 0 && remote.status === 0 && Boolean(match)
-    && match[2] === `refs/heads/${branch}` && local.stdout.trim() === match[1];
-}
-
-// Scope and pace options, all off by default:
-//   onlyUnder / onlyPaths  touch only copies inside that folder / those paths
-//   idleMs                 keep merged copies with work newer than this, and
-//                          leave their caches alone
-//   freshGraceMs           how long a merged copy is kept after its start
-function cleanupWorktrees({
-  root = repoRoot(),
-  base: baseOverride = '',
-  apply = false,
-  activeCwds: activeCwdsOverride,
-  by = 'atris worktree cleanup',
-  onlyUnder = '',
-  onlyPaths = null,
-  idleMs = 0,
-  freshGraceMs = WORKTREE_REAP_GRACE_MS,
-  now = Date.now(),
-  cleanupBudget = null,
-} = {}) {
-  const worktrees = listWorktrees(root);
-  const primary = worktrees[0]?.path ? path.resolve(worktrees[0].path) : '';
-  const current = path.resolve(root);
-  const activeCwds = Array.isArray(activeCwdsOverride) ? activeCwdsOverride.map(canonicalPath) : listActiveProcessPaths();
-  const base = normalizeTargetRef(root, baseOverride || defaultShipTarget(root));
-  const refreshError = refreshRemoteRef(root, base);
-  const candidates = [];
-  const kept = [];
-  const removed = [];
-  const cacheCandidates = [];
-  const cachePruned = [];
-  const cacheBudget = cleanupBudget || { count: 0, kib: 0 };
-  const scopePaths = Array.isArray(onlyPaths) ? onlyPaths.map(canonicalPath) : null;
-  const inScope = (wtPath) => (!scopePaths || scopePaths.includes(canonicalPath(wtPath)))
-    && (!onlyUnder || space.isInside(wtPath, onlyUnder));
-  const recentlyUsed = (wtPath) => Boolean(idleMs) && now - lastCopyActivityMs(wtPath) < idleMs;
-  const pruneCachesForKept = (wtPath) => {
-    if (worktreeWithinReapGrace(wtPath, now)) return;
-    if (recentlyUsed(wtPath)) return;
-    const caches = pruneGeneratedWorktreeCaches(wtPath, { apply, budget: cacheBudget });
-    cacheCandidates.push(...caches.candidates);
-    cachePruned.push(...caches.pruned);
-  };
-
-  for (const wt of worktrees) {
-    const wtPath = path.resolve(wt.path);
-    const item = { path: wt.path, branch: wt.branch, head: wt.head };
-    if (wtPath === primary) {
-      kept.push({ ...item, reason: 'primary_checkout' });
-      continue;
-    }
-    if (wtPath === current) {
-      kept.push({ ...item, reason: 'current_checkout' });
-      continue;
-    }
-    if (!inScope(wtPath)) {
-      kept.push({ ...item, reason: 'out_of_scope' });
-      continue;
-    }
-    if (wt.locked) {
-      kept.push({ ...item, reason: 'locked' });
-      continue;
-    }
-    if (PROTECTED_BRANCHES.has(wt.branch)) {
-      kept.push({ ...item, reason: 'protected_branch' });
-      continue;
-    }
-    if (worktreeHasActiveProcess(wtPath, activeCwds)) {
-      kept.push({ ...item, reason: activeCwds ? 'active_process' : 'process_scan_failed' });
-      continue;
-    }
-    const counts = statusCounts(wt.path);
-    if (!counts) {
-      kept.push({ ...item, reason: 'missing_or_unreadable' });
-      continue;
-    }
-    if (counts.staged || counts.unstaged || counts.untracked) {
-      pruneCachesForKept(wtPath);
-      kept.push({ ...item, reason: 'dirty', staged: counts.staged, unstaged: counts.unstaged, untracked: counts.untracked });
-      continue;
-    }
-    // Git removes ignored files along with a worktree. They may include local
-    // state, credentials, or user data, so a clean status is not enough proof.
-    const ignored = runGit(['ls-files', '--others', '--ignored', '--exclude-standard', '--directory', '-z'], { cwd: wt.path, check: false });
-    if (ignored.status !== 0 || ignored.error) {
-      kept.push({ ...item, reason: 'ignored_scan_failed' });
-      continue;
-    }
-    if (ignored.stdout) {
-      pruneCachesForKept(wtPath);
-      kept.push({ ...item, reason: 'ignored_data' });
-      continue;
-    }
-    if (!wt.head) {
-      pruneCachesForKept(wtPath);
-      kept.push({ ...item, reason: 'missing_head' });
-      continue;
-    }
-    if (refreshError) {
-      kept.push({ ...item, reason: 'base_refresh_failed' });
-      continue;
-    }
-    const merged = runGit(['merge-base', '--is-ancestor', wt.head, base], { cwd: root, check: false }).status === 0;
-    if (!merged) {
-      pruneCachesForKept(wtPath);
-      kept.push({ ...item, reason: wt.branch === 'detached' ? 'detached_unmerged' : 'unmerged' });
-      continue;
-    }
-    if (freshGraceMs > 0 && worktreeWithinReapGrace(wtPath, now, freshGraceMs)) {
-      kept.push({ ...item, reason: 'fresh_worktree_grace' });
-      continue;
-    }
-    if (recentlyUsed(wtPath)) {
-      kept.push({ ...item, reason: 'recent_activity' });
-      continue;
-    }
-    if (!originBaseIsCurrent(root, base)) {
-      kept.push({ ...item, reason: 'base_unverified' });
-      continue;
-    }
-    let real;
-    try { real = fs.realpathSync(wtPath); } catch { real = ''; }
-    if (!real || real !== wtPath) {
-      kept.push({ ...item, reason: 'path_not_canonical' });
-      continue;
-    }
-    const measured = spawnSync('du', ['-sk', wtPath], { encoding: 'utf8', timeout: 30000, killSignal: 'SIGKILL' });
-    const sizeMatch = measured.status === 0 && !String(measured.stderr || '').trim() && String(measured.stdout || '').match(/^(\d+)\s/);
-    const kib = sizeMatch ? Number(sizeMatch[1]) : 0;
-    if (!kib || cacheBudget.count >= 20 || cacheBudget.kib + kib > 10 * 1024 * 1024) {
-      kept.push({ ...item, reason: 'size_unknown_or_cleanup_limit' });
-      continue;
-    }
-    const candidate = { ...item, reason: 'merged_into_base', size_kib: kib };
-    candidates.push(candidate);
-    cacheBudget.count += 1;
-    cacheBudget.kib += kib;
-    if (!apply) continue;
-    const freshActive = Array.isArray(activeCwdsOverride) ? activeCwds : listActiveProcessPaths();
-    const freshCounts = statusCounts(wt.path);
-    const freshIgnored = runGit(['ls-files', '--others', '--ignored', '--exclude-standard', '--directory', '-z'], { cwd: wt.path, check: false });
-    const freshSize = spawnSync('du', ['-sk', wtPath], { encoding: 'utf8', timeout: 30000, killSignal: 'SIGKILL' });
-    const freshMatch = freshSize.status === 0 && !String(freshSize.stderr || '').trim() && String(freshSize.stdout || '').match(/^(\d+)\s/);
-    const gitdir = runGit(['rev-parse', '--absolute-git-dir'], { cwd: wtPath, check: false });
-    const freshHead = runGit(['rev-parse', 'HEAD'], { cwd: wtPath, check: false });
-    if (!Array.isArray(freshActive) || worktreeHasActiveProcess(wtPath, freshActive)
-        || !freshCounts || freshCounts.staged || freshCounts.unstaged || freshCounts.untracked
-        || freshIgnored.status !== 0 || freshIgnored.stdout || !freshMatch || Number(freshMatch[1]) !== kib
-        || gitdir.status !== 0 || !gitdir.stdout.trim() || fs.existsSync(path.join(gitdir.stdout.trim(), 'locked'))
-        || freshHead.status !== 0 || String(freshHead.stdout || '').trim() !== wt.head
-        || runGit(['merge-base', '--is-ancestor', wt.head, base], { cwd: root, check: false }).status !== 0
-        || !originBaseIsCurrent(root, base)
-        || canonicalPath(wtPath) !== wtPath) {
-      kept.push({ ...item, reason: 'changed_or_active_during_verification' });
-      continue;
-    }
-    const removedResult = runGit(['worktree', 'remove', wt.path], { cwd: root, check: false });
-    if (removedResult.status === 0) {
-      removed.push(candidate);
-      recordWorktreeRemoval(root, { path: wt.path, branch: wt.branch, by, reason: candidate.reason });
-    } else {
-      kept.push({ ...item, reason: 'remove_failed', error: (removedResult.stderr || removedResult.stdout || '').trim() });
-    }
-  }
-
-  return { apply, base, candidates, removed, kept, cacheCandidates, cachePruned };
-}
-
-// The sweep: cleanup for every repo with build copies in the workspace.
-// Removes copies that pass every cleanup check (merged into origin's main
-// branch, nothing changed, untracked, or ignored, nothing running inside)
-// and are unused for idleMs; clears verified webpack caches in the idle
-// copies it keeps. Shared installs and unmerged work stay for review.
-const SWEEP_IDLE_MS = 2 * 60 * 60 * 1000;
-const SWEEP_EVERY_HOURS = 3;
-const SWEEP_HIDDEN_KEPT = new Set(['primary_checkout', 'current_checkout', 'out_of_scope']);
-
-function sweepWorkspace({ workspace, apply = false, idleMs = SWEEP_IDLE_MS, activeCwds, freeSpace = space.freeBytes, by = 'atris worktree sweep', cleanupBudget = null } = {}) {
-  const root = path.resolve(workspace);
-  const before = freeSpace(root);
-  const report = { workspace: root, apply, idle_ms: idleMs, before, after: before, repos: [] };
-  const scan = Array.isArray(activeCwds) ? activeCwds.map(canonicalPath) : listActiveProcessPaths();
-  // Without a process list nobody can tell which copies are in use.
-  if (!Array.isArray(scan)) return { ...report, error: 'could not list running programs, so every copy was kept' };
-  const scope = path.join(root, space.AGENT_COPIES_DIR);
-  // One limit covers the whole sweep, not each repository separately.
-  cleanupBudget = cleanupBudget || { count: 0, kib: 0 };
-  for (const repo of space.agentCopyRepos(root)) {
-    const entry = { name: repo.name, root: repo.root };
-    try {
-      const base = defaultMainlineBase(repo.root);
-      if (!base.startsWith('origin/')) {
-        report.repos.push({ ...entry, skipped: 'no origin main branch to compare against' });
-        continue;
-      }
-      // A real removal scans again per repo and right before each copy goes;
-      // the shared scan only serves previews and tests.
-      const shared = Array.isArray(activeCwds) || !apply ? scan : undefined;
-      const result = cleanupWorktrees({ root: repo.root, base, apply, activeCwds: shared, by, onlyUnder: scope, idleMs, cleanupBudget });
-      report.repos.push({
-        ...entry,
-        base: result.base,
-        removed: result.removed,
-        candidates: result.candidates,
-        cachePruned: result.cachePruned,
-        cacheCandidates: result.cacheCandidates,
-        kept: result.kept.filter((item) => !SWEEP_HIDDEN_KEPT.has(item.reason)),
-        // Shared installs may be in use or contain local changes. Leave them
-        // for explicit review rather than pruning by age.
-        installsPruned: [],
-      });
-    } catch (error) {
-      report.repos.push({ ...entry, error: String((error && error.message) || error) });
-    }
-  }
-  report.after = freeSpace(root);
-  return report;
-}
-
-const SWEEP_KEPT_LABELS = {
-  active_process: 'in use',
-  process_scan_failed: 'in use (could not check)',
-  dirty: 'with changes',
-  unmerged: 'not merged',
-  detached_unmerged: 'not merged',
-  ignored_data: 'holding files git ignores (kept for review)',
-  ignored_scan_failed: 'unreadable',
-  fresh_worktree_grace: 'new',
-  recent_activity: 'used recently',
-  locked: 'locked',
-  protected_branch: 'on a main branch',
-  missing_or_unreadable: 'unreadable',
-  missing_head: 'without a commit',
-  remove_failed: 'failed to remove',
-  base_refresh_failed: 'main branch unreachable',
-  base_unverified: 'main branch moved during the check',
-  path_not_canonical: 'behind a link',
-  size_unknown_or_cleanup_limit: 'over the per-run limit',
-  changed_or_active_during_verification: 'changed during the check',
-};
-
-function plural(count, one, many) {
-  return `${count} ${count === 1 ? one : many}`;
-}
-
-// The folder that holds .agent-worktrees: this folder if it has one, else
-// the one above the repo's main checkout.
-function defaultSweepWorkspace(cwd = process.cwd()) {
-  if (fs.existsSync(path.join(cwd, space.AGENT_COPIES_DIR))) return cwd;
-  try {
-    return path.dirname(findPrimaryRoot(repoRoot(cwd)));
-  } catch {
-    return cwd;
-  }
-}
-
-function sweepSchedulePlan({ workspace, everyHours = SWEEP_EVERY_HOURS, homeDir = os.homedir(), platform = process.platform, atrisBin = ATRIS_BIN, envPath = process.env.PATH || '' }) {
-  return planKeep({
-    root: workspace,
-    home: path.join(homeDir, '.atris', 'worktree-sweep'),
-    platform,
-    homeDir,
-    atrisBin,
-    envPath,
-    job: {
-      name: 'worktree-sweep',
-      args: ['worktree', 'sweep', '--apply', '--workspace', workspace],
-      every_seconds: Math.round(everyHours * 3600),
-      marker: 'ATRIS_WORKTREE_SWEEP',
-    },
-  });
-}
-
 function sweepSchedule(args, workspace) {
   const everyHours = Number(readFlag(args, '--every', String(SWEEP_EVERY_HOURS)));
   if (!Number.isFinite(everyHours) || everyHours <= 0) {
@@ -2007,7 +473,6 @@ function sweepSchedule(args, workspace) {
     console.log(`sweep timer: ${removed.removed === false ? 'was not on' : 'off'} for ${workspace}`);
     return 0;
   }
-  // The timer runs this atris file every few hours; a copy or temp folder vanishes.
   if (space.isAgentCopyPath(ATRIS_BIN) || space.isScratchPath(ATRIS_BIN)) {
     console.error(`refusing: this atris runs from ${path.dirname(path.dirname(ATRIS_BIN))}, a folder that gets removed; install the timer from a lasting atris install`);
     return 2;
@@ -2188,6 +653,7 @@ function worktreeCommand(args = []) {
 }
 
 module.exports = {
+  ...worktreeCore,
   branchName,
   collidingFlights,
   mergePrWithRetry,