atlas-pipeline-mcp 1.0.16 → 1.0.18

package/dist/tools/intent.js.map

@@ -1 +1 @@
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package/dist/tools/optimize.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"optimize.d.ts","sourceRoot":"","sources":["../../src/tools/optimize.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,KAAK,EACV,eAAe,EACf,QAAQ,EACR,eAAe,EACf,YAAY,EAEb,MAAM,aAAa,CAAC;AASrB;;GAEG;AACH,wBAAsB,eAAe,CACnC,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,QAAQ,GACjB,OAAO,CAAC,eAAe,CAAC,CAqF1B;AA6JD;;GAEG;AACH,wBAAsB,qBAAqB,CACzC,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,QAAQ,EAClB,SAAS,GAAE,MAAU,GACpB,OAAO,CAAC,eAAe,CAAC,CAwC1B;AAED;;GAEG;AACH,eAAO,MAAM,mBAAmB;IAC9B;;OAEG;;eAE2C,YAAY,CAAC,MAAM,CAAC,EAAE;;;;IAKpE;;OAEG;;eAE0C,YAAY,CAAC,MAAM,CAAC,EAAE;;;;IAKnE;;OAEG;;eAEsB,YAAY,CAAC,MAAM,CAAC,EAAE;;;;IAK/C;;OAEG;;eAEqE,YAAY,CAAC,MAAM,CAAC,EAAE;;;;CAI/F,CAAC;AAEF;;GAEG;AACH,wBAAgB,8BAA8B,CAC5C,QAAQ,EAAE,QAAQ,GACjB;IACD,MAAM,EAAE,MAAM,OAAO,mBAAmB,CAAC;IACzC,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,MAAM,EAAE,CAAC;CACtB,CAqCA"}

package/dist/tools/optimize.js

@@ -7,7 +7,8 @@
  * - Enhances readability and maintainability
  * - Follows best practices
  */
-import { getOllamaClient, PromptTemplates } from './ollama.js';
+import { getActiveProvider, isNoLLMMode } from '../providers/index.js';
+import { PromptTemplates } from './ollama.js';
 import { logger } from '../utils.js';
 // ============================================================================
 // Optimization
@@ -25,10 +26,24 @@ export async function optimizeVariant(variant, critique) {
     if (critique.qualityScore >= 90 && !hasCriticalIssues(critique)) {
         return createMinimalOptimization(variant, critique);
     }
+    // Check if we're in no-LLM mode - return delegation fallback
+    if (isNoLLMMode()) {
+        logger.debug('No LLM available, returning optimization delegation fallback');
+        return {
+            content: variant.content,
+            optimizationsApplied: [{
+                    type: 'best_practice',
+                    description: 'Optimization Delegation: AI Assistant to perform changes',
+                    impact: 'high',
+                }],
+            finalMetrics: critique.assessment,
+            explanation: `Optimization Strategy: Manual Application.\n\nBased on the analysis, please apply the following improvements to the code:\n${critique.issues.map(i => `- [${i.severity}] ${i.description}`).join('\n')}`,
+        };
+    }
     try {
-        const client = getOllamaClient();
+        const provider = await getActiveProvider();
         const prompt = buildOptimizationPrompt(variant, critique);
-        const response = await client.generateJson(prompt, {
+        const response = await provider.completeJson(prompt, {
             systemPrompt: PromptTemplates.optimization,
             temperature: 0.4,
             maxTokens: 4096,

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package/dist/tools/security.d.ts

@@ -0,0 +1,45 @@
+/**
+ * Atlas Server - Security Analysis Tool
+ *
+ * Comprehensive security vulnerability scanning:
+ * - SQL Injection detection
+ * - XSS vulnerability detection
+ * - Hardcoded secrets/credentials
+ * - Insecure dependencies patterns
+ * - Authentication/Authorization issues
+ * - Input validation gaps
+ * - Cryptographic weaknesses
+ */
+export interface SecurityVulnerability {
+    id: string;
+    severity: 'critical' | 'high' | 'medium' | 'low' | 'info';
+    category: SecurityCategory;
+    title: string;
+    description: string;
+    lineNumber?: number;
+    codeSnippet?: string;
+    recommendation: string;
+    cweId?: string;
+    owaspCategory?: string;
+}
+export type SecurityCategory = 'injection' | 'authentication' | 'authorization' | 'xss' | 'secrets' | 'cryptography' | 'configuration' | 'dependencies' | 'input_validation' | 'sensitive_data' | 'other';
+export interface SecurityScanResult {
+    vulnerabilities: SecurityVulnerability[];
+    summary: SecuritySummary;
+    riskScore: number;
+    recommendations: string[];
+    scannedAt: string;
+}
+export interface SecuritySummary {
+    critical: number;
+    high: number;
+    medium: number;
+    low: number;
+    info: number;
+    total: number;
+}
+/**
+ * Scan code for security vulnerabilities
+ */
+export declare function scanSecurity(code: string, language?: string, context?: string): Promise<SecurityScanResult>;
+//# sourceMappingURL=security.d.ts.map

package/dist/tools/security.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"security.d.ts","sourceRoot":"","sources":["../../src/tools/security.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAUH,MAAM,WAAW,qBAAqB;IACpC,EAAE,EAAE,MAAM,CAAC;IACX,QAAQ,EAAE,UAAU,GAAG,MAAM,GAAG,QAAQ,GAAG,KAAK,GAAG,MAAM,CAAC;IAC1D,QAAQ,EAAE,gBAAgB,CAAC;IAC3B,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,cAAc,EAAE,MAAM,CAAC;IACvB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,MAAM,gBAAgB,GACxB,WAAW,GACX,gBAAgB,GAChB,eAAe,GACf,KAAK,GACL,SAAS,GACT,cAAc,GACd,eAAe,GACf,cAAc,GACd,kBAAkB,GAClB,gBAAgB,GAChB,OAAO,CAAC;AAEZ,MAAM,WAAW,kBAAkB;IACjC,eAAe,EAAE,qBAAqB,EAAE,CAAC;IACzC,OAAO,EAAE,eAAe,CAAC;IACzB,SAAS,EAAE,MAAM,CAAC;IAClB,eAAe,EAAE,MAAM,EAAE,CAAC;IAC1B,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,eAAe;IAC9B,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;CACf;AAsMD;;GAEG;AACH,wBAAsB,YAAY,CAChC,IAAI,EAAE,MAAM,EACZ,QAAQ,CAAC,EAAE,MAAM,EACjB,OAAO,CAAC,EAAE,MAAM,GACf,OAAO,CAAC,kBAAkB,CAAC,CAiC7B"}

package/dist/tools/security.js

@@ -0,0 +1,417 @@
+/**
+ * Atlas Server - Security Analysis Tool
+ *
+ * Comprehensive security vulnerability scanning:
+ * - SQL Injection detection
+ * - XSS vulnerability detection
+ * - Hardcoded secrets/credentials
+ * - Insecure dependencies patterns
+ * - Authentication/Authorization issues
+ * - Input validation gaps
+ * - Cryptographic weaknesses
+ */
+import { getActiveProvider, isNoLLMMode } from '../providers/index.js';
+import { logger } from '../utils.js';
+const SECURITY_PATTERNS = [
+    // SQL Injection
+    {
+        pattern: /(\$\{.*\}|`.*\$\{.*\}`|\+\s*\w+\s*\+).*(?:SELECT|INSERT|UPDATE|DELETE|DROP|CREATE|ALTER|EXEC|EXECUTE)/gi,
+        category: 'injection',
+        severity: 'critical',
+        title: 'Potential SQL Injection',
+        description: 'String concatenation or template literals used in SQL queries can lead to SQL injection attacks.',
+        recommendation: 'Use parameterized queries or prepared statements instead of string concatenation.',
+        cweId: 'CWE-89',
+    },
+    {
+        pattern: /(?:query|execute|exec)\s*\(\s*[`'"].*\$\{/gi,
+        category: 'injection',
+        severity: 'critical',
+        title: 'SQL Query with Template Literal',
+        description: 'Template literals in SQL queries are vulnerable to injection attacks.',
+        recommendation: 'Use parameterized queries with placeholders (?, $1, :param).',
+        cweId: 'CWE-89',
+    },
+    // Command Injection
+    {
+        pattern: /(?:exec|spawn|execSync|spawnSync|execFile)\s*\([^)]*\$\{/gi,
+        category: 'injection',
+        severity: 'critical',
+        title: 'Potential Command Injection',
+        description: 'User input in shell commands can lead to arbitrary command execution.',
+        recommendation: 'Validate and sanitize all inputs. Use execFile with argument arrays instead of exec.',
+        cweId: 'CWE-78',
+    },
+    // XSS
+    {
+        pattern: /innerHTML\s*=|outerHTML\s*=|document\.write\s*\(/gi,
+        category: 'xss',
+        severity: 'high',
+        title: 'Potential XSS Vulnerability',
+        description: 'Direct DOM manipulation with user content can lead to cross-site scripting.',
+        recommendation: 'Use textContent instead of innerHTML, or sanitize HTML with DOMPurify.',
+        cweId: 'CWE-79',
+    },
+    {
+        pattern: /dangerouslySetInnerHTML/gi,
+        category: 'xss',
+        severity: 'high',
+        title: 'React dangerouslySetInnerHTML',
+        description: 'Using dangerouslySetInnerHTML can introduce XSS vulnerabilities.',
+        recommendation: 'Sanitize HTML content with DOMPurify before rendering.',
+        cweId: 'CWE-79',
+    },
+    // Hardcoded Secrets
+    {
+        pattern: /(?:api[_-]?key|apikey|secret|password|passwd|pwd|token|auth|credential)\s*[:=]\s*['"][^'"]{8,}['"]/gi,
+        category: 'secrets',
+        severity: 'critical',
+        title: 'Hardcoded Secret/Credential',
+        description: 'Secrets hardcoded in source code can be exposed in version control.',
+        recommendation: 'Use environment variables or a secrets manager (e.g., AWS Secrets Manager, HashiCorp Vault).',
+        cweId: 'CWE-798',
+    },
+    {
+        pattern: /(?:-----BEGIN\s+(?:RSA\s+)?PRIVATE\s+KEY-----)/gi,
+        category: 'secrets',
+        severity: 'critical',
+        title: 'Private Key in Source Code',
+        description: 'Private keys should never be stored in source code.',
+        recommendation: 'Store private keys in secure key management systems, not in code.',
+        cweId: 'CWE-321',
+    },
+    // Weak Cryptography
+    {
+        pattern: /createHash\s*\(\s*['"](?:md5|sha1)['"]\s*\)/gi,
+        category: 'cryptography',
+        severity: 'high',
+        title: 'Weak Hash Algorithm',
+        description: 'MD5 and SHA1 are cryptographically broken and should not be used for security.',
+        recommendation: 'Use SHA-256, SHA-3, or bcrypt/argon2 for password hashing.',
+        cweId: 'CWE-328',
+    },
+    {
+        pattern: /Math\.random\s*\(\)/gi,
+        category: 'cryptography',
+        severity: 'medium',
+        title: 'Insecure Random Number Generator',
+        description: 'Math.random() is not cryptographically secure.',
+        recommendation: 'Use crypto.randomBytes() or crypto.randomUUID() for security-sensitive operations.',
+        cweId: 'CWE-338',
+    },
+    // Authentication Issues
+    {
+        pattern: /(?:verify|check).*(?:===|==)\s*(?:true|false|['"])/gi,
+        category: 'authentication',
+        severity: 'medium',
+        title: 'Potentially Weak Authentication Check',
+        description: 'Simple boolean comparisons for authentication may be bypassable.',
+        recommendation: 'Use timing-safe comparison functions and proper authentication libraries.',
+        cweId: 'CWE-287',
+    },
+    // Eval and Dynamic Code Execution
+    {
+        pattern: /\beval\s*\(/gi,
+        category: 'injection',
+        severity: 'critical',
+        title: 'Use of eval()',
+        description: 'eval() executes arbitrary code and is a severe security risk.',
+        recommendation: 'Avoid eval(). Use JSON.parse() for JSON, or Function constructor with caution.',
+        cweId: 'CWE-95',
+    },
+    {
+        pattern: /new\s+Function\s*\(/gi,
+        category: 'injection',
+        severity: 'high',
+        title: 'Dynamic Function Constructor',
+        description: 'new Function() can execute arbitrary code similar to eval().',
+        recommendation: 'Avoid dynamic code generation. Use safe alternatives.',
+        cweId: 'CWE-95',
+    },
+    // Input Validation
+    {
+        pattern: /JSON\.parse\s*\([^)]*(?:req|request|body|params|query)/gi,
+        category: 'input_validation',
+        severity: 'medium',
+        title: 'Unvalidated JSON Parsing',
+        description: 'Parsing user input without validation can lead to prototype pollution or crashes.',
+        recommendation: 'Validate JSON schema before parsing. Use libraries like zod or joi.',
+        cweId: 'CWE-20',
+    },
+    // Sensitive Data Exposure
+    {
+        pattern: /console\.log\s*\([^)]*(?:password|secret|token|key|credential)/gi,
+        category: 'sensitive_data',
+        severity: 'medium',
+        title: 'Sensitive Data in Logs',
+        description: 'Logging sensitive information can expose credentials.',
+        recommendation: 'Redact sensitive data before logging. Use structured logging.',
+        cweId: 'CWE-532',
+    },
+    // CORS Misconfiguration
+    {
+        pattern: /(?:Access-Control-Allow-Origin|cors).*['"]\*['"]/gi,
+        category: 'configuration',
+        severity: 'medium',
+        title: 'Overly Permissive CORS',
+        description: 'Allowing all origins (*) can expose APIs to unauthorized access.',
+        recommendation: 'Specify allowed origins explicitly instead of using wildcard.',
+        cweId: 'CWE-942',
+    },
+    // Path Traversal
+    {
+        pattern: /(?:readFile|writeFile|readdir|unlink|rmdir).*(?:req|request|params|query)/gi,
+        category: 'injection',
+        severity: 'high',
+        title: 'Potential Path Traversal',
+        description: 'Using user input in file operations can allow directory traversal attacks.',
+        recommendation: 'Validate and sanitize file paths. Use path.resolve() and check against base directory.',
+        cweId: 'CWE-22',
+    },
+    // Insecure Deserialization
+    {
+        pattern: /(?:unserialize|deserialize|pickle\.loads|yaml\.load(?!_safe))/gi,
+        category: 'injection',
+        severity: 'critical',
+        title: 'Insecure Deserialization',
+        description: 'Deserializing untrusted data can lead to remote code execution.',
+        recommendation: 'Use safe deserialization methods. Validate and sanitize input.',
+        cweId: 'CWE-502',
+    },
+    // HTTP without TLS
+    {
+        pattern: /http:\/\/(?!localhost|127\.0\.0\.1|0\.0\.0\.0)/gi,
+        category: 'configuration',
+        severity: 'low',
+        title: 'Non-HTTPS URL',
+        description: 'Using HTTP instead of HTTPS exposes data to interception.',
+        recommendation: 'Use HTTPS for all external communications.',
+        cweId: 'CWE-319',
+    },
+];
+// ============================================================================
+// Security Scanning
+// ============================================================================
+/**
+ * Scan code for security vulnerabilities
+ */
+export async function scanSecurity(code, language, context) {
+    logger.debug({ codeLength: code.length, language }, 'Starting security scan');
+    // First, run heuristic pattern matching
+    const heuristicVulns = runHeuristicScan(code);
+    // If LLM is available, enhance with AI analysis
+    let aiVulns = [];
+    if (!isNoLLMMode()) {
+        try {
+            aiVulns = await runAIScan(code, language, context);
+        }
+        catch (error) {
+            logger.warn({ error }, 'AI security scan failed, using heuristic results only');
+        }
+    }
+    // Merge and deduplicate vulnerabilities
+    const allVulns = mergeVulnerabilities(heuristicVulns, aiVulns);
+    // Calculate summary
+    const summary = calculateSummary(allVulns);
+    const riskScore = calculateRiskScore(summary);
+    // Generate recommendations
+    const recommendations = generateRecommendations(allVulns);
+    return {
+        vulnerabilities: allVulns,
+        summary,
+        riskScore,
+        recommendations,
+        scannedAt: new Date().toISOString(),
+    };
+}
+/**
+ * Run heuristic pattern-based security scan
+ */
+function runHeuristicScan(code) {
+    const vulnerabilities = [];
+    const lines = code.split('\n');
+    for (const secPattern of SECURITY_PATTERNS) {
+        // Reset regex state
+        secPattern.pattern.lastIndex = 0;
+        let match;
+        while ((match = secPattern.pattern.exec(code)) !== null) {
+            // Find line number
+            const beforeMatch = code.substring(0, match.index);
+            const lineNumber = beforeMatch.split('\n').length;
+            // Get code snippet (the line containing the match)
+            const snippetLine = lines[lineNumber - 1] || '';
+            vulnerabilities.push({
+                id: `heur-${vulnerabilities.length + 1}`,
+                severity: secPattern.severity,
+                category: secPattern.category,
+                title: secPattern.title,
+                description: secPattern.description,
+                lineNumber,
+                codeSnippet: snippetLine.trim(),
+                recommendation: secPattern.recommendation,
+                cweId: secPattern.cweId,
+            });
+        }
+    }
+    return vulnerabilities;
+}
+/**
+ * Run AI-powered security analysis
+ */
+async function runAIScan(code, language, context) {
+    const provider = await getActiveProvider();
+    const prompt = `Analyze this code for security vulnerabilities.
+
+## Code
+\`\`\`${language ?? ''}
+${code}
+\`\`\`
+
+${context ? `## Additional Context\n${context}\n` : ''}
+
+## Find These Types of Issues:
+1. Injection vulnerabilities (SQL, Command, XSS)
+2. Authentication/Authorization flaws
+3. Hardcoded secrets or credentials
+4. Cryptographic weaknesses
+5. Input validation issues
+6. Sensitive data exposure
+7. Configuration problems
+8. Any OWASP Top 10 vulnerabilities
+
+## Output Format
+{
+  "vulnerabilities": [
+    {
+      "severity": "critical|high|medium|low|info",
+      "category": "injection|authentication|authorization|xss|secrets|cryptography|configuration|dependencies|input_validation|sensitive_data|other",
+      "title": "Brief title",
+      "description": "Detailed description of the vulnerability",
+      "lineNumber": 0,
+      "recommendation": "How to fix it",
+      "cweId": "CWE-XXX",
+      "owaspCategory": "A01:2021 - Broken Access Control"
+    }
+  ]
+}`;
+    const response = await provider.completeJson(prompt, {
+        systemPrompt: 'You are a senior security engineer. Analyze code for vulnerabilities. Be thorough but avoid false positives. Return valid JSON only.',
+        temperature: 0.2,
+        maxTokens: 2048,
+    });
+    if (response.data?.vulnerabilities) {
+        return response.data.vulnerabilities.map((v, i) => ({
+            id: `ai-${i + 1}`,
+            severity: normalizeSeverity(v.severity),
+            category: normalizeCategory(v.category),
+            title: v.title,
+            description: v.description,
+            lineNumber: v.lineNumber,
+            recommendation: v.recommendation,
+            cweId: v.cweId,
+            owaspCategory: v.owaspCategory,
+        }));
+    }
+    return [];
+}
+/**
+ * Merge and deduplicate vulnerabilities
+ */
+function mergeVulnerabilities(heuristic, ai) {
+    const seen = new Set();
+    const merged = [];
+    for (const vuln of [...heuristic, ...ai]) {
+        // Create a dedup key based on category, line, and title
+        const key = `${vuln.category}-${vuln.lineNumber ?? 'none'}-${vuln.title.toLowerCase().slice(0, 30)}`;
+        if (!seen.has(key)) {
+            seen.add(key);
+            merged.push(vuln);
+        }
+    }
+    // Sort by severity
+    const severityOrder = { critical: 0, high: 1, medium: 2, low: 3, info: 4 };
+    return merged.sort((a, b) => severityOrder[a.severity] - severityOrder[b.severity]);
+}
+/**
+ * Calculate vulnerability summary
+ */
+function calculateSummary(vulnerabilities) {
+    const summary = {
+        critical: 0,
+        high: 0,
+        medium: 0,
+        low: 0,
+        info: 0,
+        total: vulnerabilities.length,
+    };
+    for (const vuln of vulnerabilities) {
+        summary[vuln.severity]++;
+    }
+    return summary;
+}
+/**
+ * Calculate overall risk score (0-100)
+ */
+function calculateRiskScore(summary) {
+    // Weighted scoring
+    const score = summary.critical * 25 +
+        summary.high * 15 +
+        summary.medium * 8 +
+        summary.low * 3 +
+        summary.info * 1;
+    // Normalize to 0-100 (capped)
+    return Math.min(100, score);
+}
+/**
+ * Generate actionable recommendations
+ */
+function generateRecommendations(vulnerabilities) {
+    const recommendations = new Set();
+    // Add critical issue recommendations first
+    for (const vuln of vulnerabilities) {
+        if (vuln.severity === 'critical' || vuln.severity === 'high') {
+            recommendations.add(vuln.recommendation);
+        }
+    }
+    // Add general best practices
+    const categories = new Set(vulnerabilities.map(v => v.category));
+    if (categories.has('secrets')) {
+        recommendations.add('Implement a secrets management solution (e.g., HashiCorp Vault, AWS Secrets Manager)');
+    }
+    if (categories.has('injection')) {
+        recommendations.add('Use parameterized queries and input validation throughout the application');
+    }
+    if (categories.has('authentication')) {
+        recommendations.add('Review authentication flow and implement multi-factor authentication');
+    }
+    if (categories.has('xss')) {
+        recommendations.add('Implement Content Security Policy (CSP) headers');
+    }
+    return Array.from(recommendations).slice(0, 10);
+}
+/**
+ * Normalize severity string
+ */
+function normalizeSeverity(severity) {
+    const normalized = severity.toLowerCase();
+    if (['critical', 'high', 'medium', 'low', 'info'].includes(normalized)) {
+        return normalized;
+    }
+    return 'medium';
+}
+/**
+ * Normalize category string
+ */
+function normalizeCategory(category) {
+    const normalized = category.toLowerCase().replace(/[^a-z_]/g, '_');
+    const validCategories = [
+        'injection', 'authentication', 'authorization', 'xss', 'secrets',
+        'cryptography', 'configuration', 'dependencies', 'input_validation',
+        'sensitive_data', 'other'
+    ];
+    if (validCategories.includes(normalized)) {
+        return normalized;
+    }
+    return 'other';
+}
+//# sourceMappingURL=security.js.map

package/dist/tools/security.js.map

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