atlas-mcp 0.1.0

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Files changed (54) hide show
  1. package/.env.example +32 -0
  2. package/README.md +282 -0
  3. package/package.json +72 -0
  4. package/public/app/assets/app-CxbS1w9p.js +3981 -0
  5. package/public/app/assets/index-BA6nxCuI.css +1 -0
  6. package/public/app/assets/index-BXmIRrQH.js +177 -0
  7. package/public/app/index.html +27 -0
  8. package/public/assets/brain-atlas.LICENSE.txt +16 -0
  9. package/public/assets/brain-atlas.glb +0 -0
  10. package/public/assets/brain.obj +27282 -0
  11. package/public/fonts/DepartureMono-Regular.woff +0 -0
  12. package/public/fonts/DepartureMono-Regular.woff2 +0 -0
  13. package/scripts/sync-memory-vectors.js +46 -0
  14. package/src/audit.js +9 -0
  15. package/src/cli/args.js +87 -0
  16. package/src/cli/commands/add.js +103 -0
  17. package/src/cli/commands/config.js +228 -0
  18. package/src/cli/commands/delete.js +75 -0
  19. package/src/cli/commands/entities.js +39 -0
  20. package/src/cli/commands/entity.js +47 -0
  21. package/src/cli/commands/get.js +46 -0
  22. package/src/cli/commands/list.js +53 -0
  23. package/src/cli/commands/related.js +56 -0
  24. package/src/cli/commands/search.js +68 -0
  25. package/src/cli/commands/update.js +58 -0
  26. package/src/cli/deps.js +114 -0
  27. package/src/cli/env-file.js +44 -0
  28. package/src/cli/format.js +246 -0
  29. package/src/cli.js +187 -0
  30. package/src/cognitive-worker.js +381 -0
  31. package/src/db.js +2674 -0
  32. package/src/extraction-context.js +31 -0
  33. package/src/ingestion-service.js +387 -0
  34. package/src/ingestion-worker.js +225 -0
  35. package/src/llm-config.js +31 -0
  36. package/src/llm.js +789 -0
  37. package/src/logger.js +51 -0
  38. package/src/mcp-server.js +577 -0
  39. package/src/memory-comparison.js +421 -0
  40. package/src/related-memories.js +232 -0
  41. package/src/run-cognitive-worker.js +12 -0
  42. package/src/run-ingestion-worker.js +13 -0
  43. package/src/run-vector-worker.js +12 -0
  44. package/src/schemas.js +413 -0
  45. package/src/semantic-validation.js +430 -0
  46. package/src/server.js +827 -0
  47. package/src/shared/brain-regions.js +61 -0
  48. package/src/shared/entity-lens.js +249 -0
  49. package/src/shared/memory-placement.js +171 -0
  50. package/src/shared/memory-search.js +55 -0
  51. package/src/shared/region-anchors.js +112 -0
  52. package/src/shared/region-mapper.js +247 -0
  53. package/src/vector-store.js +546 -0
  54. package/src/vector-worker.js +71 -0
package/public/app/index.html ADDED
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+ <!doctype html>
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+ <html lang="en">
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+ <head>
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+ <meta charset="UTF-8" />
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+ <meta
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+ name="description"
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+ content="Atlas turns moments into a living atlas of memory — people, places, time, and the neural associations that make them retrievable."
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+ />
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+ <title>Atlas · A map of remembered things</title>
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+ <link
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+ rel="icon"
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+ href="data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 32 32'%3E%3Crect width='32' height='32' fill='%23060807'/%3E%3Ccircle cx='16' cy='16' r='11' fill='none' stroke='%234ef08f' stroke-width='1.5'/%3E%3Ccircle cx='19' cy='12' r='2' fill='%234ef08f'/%3E%3Ccircle cx='12' cy='20' r='1.6' fill='%234ef08f'/%3E%3C/svg%3E"
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+ />
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+ <link rel="preconnect" href="https://fonts.googleapis.com" />
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+ <link rel="preconnect" href="https://fonts.gstatic.com" crossorigin />
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+ <link
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+ href="https://fonts.googleapis.com/css2?family=Instrument+Serif:ital@0;1&display=swap"
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+ rel="stylesheet"
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+ />
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+ <script type="module" crossorigin src="/assets/index-BXmIRrQH.js"></script>
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+ <link rel="stylesheet" crossorigin href="/assets/index-BA6nxCuI.css">
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+ </head>
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+ <body>
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+ <div id="root"></div>
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+ </body>
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+ </html>
package/public/assets/brain-atlas.LICENSE.txt ADDED
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+ Brain atlas asset attribution
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+
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+ Source: Human Reference Atlas (HRA) v1.3, 3D Male Allen Brain
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+ Provider: HuBMAP Consortium / humanatlas.io
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+ Source URL: https://cdn.humanatlas.io/hra-releases/v2.0/models/3d-vh-m-allen-brain.glb
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+ Source SHA-256: 2b9ad5b53e40e9f0936da74f7be38d2eed15604e26358c3870a0ea13499b9a35
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+ Digital object page: https://cdn.humanatlas.io/hra-releases/v2.0/docs/ref-organs/3d-m-brain.html
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+
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+ The source model is licensed under the Creative Commons Attribution 4.0
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+ International license (CC BY 4.0):
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+ https://creativecommons.org/licenses/by/4.0/
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+
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+ Neurogram modifies the source by selecting anatomical structures, grouping them
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+ into application-specific semantic regions, simplifying geometry, joining meshes,
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+ reordering vertices, and quantizing attributes. The resulting semantic groupings
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+ are product mappings and are not anatomical claims by the HRA or HuBMAP.
package/public/assets/brain-atlas.glb ADDED
Binary file