atabey 0.1.1-beta → 0.1.3

package/README.md

@@ -1,10 +1,19 @@
-# [GOV] Atabey — AI Governance & Multi-Agent Platform / Orchestrator (Core Engine)
+# Atabey — Local AI Control Plane & Discipline Layer (Core Engine)
 
-[![Version](https://img.shields.io/badge/Version-v0.1.0-beta.0-blue.svg)](https://github.com/ysf-bkr/atabey)
+[![Version](https://img.shields.io/badge/Version-v0.1.3-blue.svg)](https://github.com/ysf-bkr/atabey)
 [![npm](https://img.shields.io/npm/v/atabey)](https://www.npmjs.com/package/atabey)
 [![License: AGPL-3.0](https://img.shields.io/badge/License-AGPL--3.0-blue.svg)](https://www.gnu.org/licenses/agpl-3.0)
 
-**Atabey Core Engine** is the CLI and orchestration layer of the Atabey framework. It provides the multi-agent system, governance engines, routing engine, risk assessment, quality gates, evaluation and learning, contract management, phase management, memory systems, skill definitions, and provider integrations.
+**Atabey Core Engine** is the CLI and orchestration layer of the Atabey framework: the multi-agent system, governance engines, routing engine, risk assessment, quality gates, evaluation & learning, contract management, phase management, memory systems, skill definitions and provider integrations.
+
+**Atabey** is a **local AI control plane & discipline layer** that sits between your
+codebase and your local AI coding assistants. It does **not** write code and does **not**
+host an LLM — it **disciplines, bounds and coordinates** the assistant you already use
+through the Model Context Protocol (MCP).
+
+> "Order from Chaos" — keeps AI coding assistants focused, blocks destructive actions,
+> rolls back broken edits, prevents runaway token loops, and records an audit trail.
+
 
 ---
 
@@ -12,14 +21,15 @@
 
 | Capability | Description |
 |-----------|-------------|
-| **CLI** | 30+ commands for initialization, orchestration, status, compliance, memory |
+| **CLI** | 27 commands for initialization, orchestration, status, compliance and memory |
 | **Engines** | 9 engines: routing, risk, quality, evaluation, health, planning, agent-executor, agent-loop, crud-governance |
-| **Agents** | 13 specialized agent definitions with 3-tier hierarchy (Supreme/Core/Recon) |
+| **Agents** | 13 specialized agent definitions with a 3-tier hierarchy (Supreme / Core / Recon) |
+| **Runtime** | Headless CLI adapters, DAG dispatcher, git-worktree isolation, signed evidence bundles |
 | **Memory** | 3-layer memory: vector (TF-IDF/OpenAI), project, specialty |
-| **Skills** | 11 core skills with 8 platform adapter mappings |
+| **Skills** | 11 core skills mapped across 8 platform adapters |
 | **Providers** | 8 platform adapters: Claude, Gemini, Cursor, Codex, Antigravity, Grok, Local LLM, OpenCode |
-| **Contracts** | Zod-schema task contracts, API contracts |
-| **Standards** | 30+ governance standard templates |
+| **Contracts** | Zod-schema task contracts and API contracts |
+| **Standards** | 33 governance standard templates |
 
 ---
 
@@ -32,10 +42,10 @@ npm install -g atabey
 ## Quick Start
 
 ```bash
-# Initialize in your project
+# Initialize Atabey inside your project
 npx atabey init gemini --profile freelancer --yes
 
-# Verify installation
+# Verify
 npx atabey status
 ```
 
@@ -54,7 +64,7 @@ npx atabey status
 | **@database** | Core | 9/10 | Database management, migrations, queries |
 | **@analyst** | Recon | 8/10 | Strategy analysis, requirements |
 | **@mobile** | Core | 8/10 | React Native mobile development |
-| **@native** | Recon | 8/10 | Native platform integration |
+| **@native** | Recon | 8/10 | Native platform integration (Rust/Go only) |
 | **@devops** | Core | 8/10 | CI/CD, deploy, infrastructure |
 | **@explorer** | Recon | 8/10 | Codebase discovery, analysis |
 | **@git** | Recon | 8/10 | Version control, commit management |
@@ -65,30 +75,27 @@ npx atabey status
 
 | Engine | File | Description |
 |--------|------|-------------|
-| **RoutingEngine** | `routing-engine.ts` | TF-IDF + Semantic (cosine similarity) task routing with 60/40 blend |
-| **RiskEngine** | `risk-engine.ts` | Keyword + path + behavioral risk assessment (requiresApproval ≥ 60) |
+| **RoutingEngine** | `routing-engine.ts` | TF-IDF + semantic (cosine similarity) task routing, 60/40 blend |
+| **RiskEngine** | `risk-engine.ts` | Keyword + path + behavioral risk assessment (requires approval ≥ 60) |
 | **QualityGate** | `quality-gate.ts` | Compliance AST scan + lint + content validation |
-| **EvaluationEngine** | `evaluation-engine.ts` | Post-task scoring (0-100), specialty memory learning |
-| **HealthEngine** | `health-engine.ts` | Weighted project health: agent(30%), quality(25%), security(25%), architecture(20%) |
-| **PlanningEngine** | `planning-engine.ts` | DAG-based task plan creation + circular dependency detection |
+| **EvaluationEngine** | `evaluation-engine.ts` | Post-task scoring (0–100), specialty-memory learning |
+| **HealthEngine** | `health-engine.ts` | Weighted project health: agent 30% · quality 25% · security 25% · architecture 20% |
+| **PlanningEngine** | `planning-engine.ts` | DAG-based task plan creation + circular-dependency detection |
 | **AgentExecutor** | `agent-executor.ts` | Hermes message-based agent task distribution with 3 retries |
 | **AgentLoop** | `agent-loop.ts` | Background polling loop consuming DELEGATION messages |
-| **CrudGovernance** | `crud-governance.ts` | CRUD operation governance rules |
+| **CrudGovernance** | `crud-governance.ts` | CRUD / administrative operation governance rules |
 
-> Contract/policy/phase/session logic lives elsewhere (CLI commands, `atabey-shared`),
-> and file locking is `AtomicFileLock` in `packages/shared/src/file-lock.ts`.
+> Contract, policy, phase and session logic lives in the CLI commands and `atabey-shared`;
+> atomic file locking is `AtomicFileLock` in `packages/shared`.
 
----
-
-## 🧠 3-Layer Memory System
+## 3-Layer Memory System
 
 | Layer | Storage | Technology | Purpose |
 |-------|---------|------------|---------|
-| **Vector Memory** | SQLite | TF-IDF / OpenAI embeddings + Cosine similarity | Semantic search across project knowledge |
+| **Vector Memory** | SQLite | TF-IDF / OpenAI embeddings + cosine similarity | Semantic search across project knowledge |
 | **Project Memory** | Markdown | `PROJECT_MEMORY.md` | Central project state, synchronized every session |
 | **Specialty Memory** | Markdown | `.atabey/memory/specialties/{agent}.md` | Per-agent learned conventions from past tasks |
 
-### Memory Flow
 ```
 Task → Evaluation Engine → Score (0-100)
   ├── Success → extractSuccessLesson() → updateSpecialtyMemory()
@@ -97,6 +104,7 @@ Task → Evaluation Engine → Score (0-100)
   Next session: readLearnedConventions() → injected into agent prompt
 ```
 
+
 ---
 
 ## 🎯 11 Core Skills
@@ -110,18 +118,23 @@ Task → Evaluation Engine → Score (0-100)
 | **QUALITY_ASSURANCE** | run_shell_command, read_file | Testing & code quality |
 | **DATABASE_MANAGEMENT** | read_file, replace_text, run_shell_command | DB & migrations |
 | **DEVOPS_INFRASTRUCTURE** | run_shell_command, read_file | CI/CD & deployment |
+| **SECURITY_AUDIT** | grep_search, read_file, http_proxy_request | Vulnerability assessment |
+| **FRONTEND_DEVELOPMENT** | write_file, replace_text, run_shell_command | UI & component design |
+| **MOBILE_DEVELOPMENT** | write_file, replace_text | Mobile & cross-platform |
+| **GIT_WORKFLOW** | run_shell_command, git | Version control discipline |
 
 ### Platform Adapter Skills
 
 | Platform | Skills | Tool Count |
 |----------|--------|:----------:|
-| **Claude Code** ⭐ | file_system, editing, orchestration, governance, quality, search, memory | 20 tools |
-| **Gemini CLI** | file_system, editing, orchestration, governance, quality, search | 14 tools |
-| **Cursor IDE** | file_system, editing, search, quality | 9 tools |
-| **Codex CLI** | file_system, editing, search, quality | 9 tools |
-| **Antigravity CLI** | file_system, editing, orchestration, governance, quality, search | 14 tools |
-| **Grok** | file_system, editing, search, quality | 9 tools |
-| **Local LLM** | file_system, editing, orchestration, governance, quality, search | 14 tools |
+| **Claude Code** ⭐ | file_system, editing, orchestration, governance, quality, search, memory | 20 |
+| **Gemini CLI** | file_system, editing, orchestration, governance, quality, search | 14 |
+| **Cursor IDE** | file_system, editing, search, quality | 9 |
+| **Codex CLI** | file_system, editing, search, quality | 9 |
+| **Antigravity CLI** | file_system, editing, orchestration, governance, quality, search | 14 |
+| **Grok** | file_system, editing, search, quality | 9 |
+| **Local LLM** | file_system, editing, orchestration, governance, quality, search | 14 |
+| **OpenCode** | file_system, editing, orchestration, governance, quality, search | 14 |
 
 ---
 
@@ -138,44 +151,56 @@ Task → Evaluation Engine → Score (0-100)
 | **Performance** | performance-standards, observability-standards |
 | **UI/UX** | tailwind-standards, react-query-standards, react-router-standards |
 | **Data** | typeorm-standards, vite-standards |
-| **Economics** | pino-standards, swagger-standards |
+| **Reporting** | pino-standards, swagger-standards |
 
----
-
-## 🔌 8 Platform Adapters
+## 8 Platform Adapters
 
 | Platform | Framework Dir | Agents Dir | Shim File |
 |----------|---------------|------------|-----------|
 | **Claude Code** | `.claude` | `.claude/agents/*.md` | `CLAUDE.md` |
 | **Gemini CLI** | `.gemini` | `.gemini/agents/*.md` | `GEMINI.md` |
 | **Cursor IDE** | `.cursor` | `.cursor/rules/*.mdc` | `CURSOR.md` |
-| **Codex CLI** | `.agents` | `.agents/instructions/*.md` | `copilot-instructions.md` |
+| **Codex CLI / Copilot** | `.agents` | `.agents/instructions/*.md` | `copilot-instructions.md` |
 | **Antigravity CLI** | `.agents` | `.agents/agents/{name}/agent.json` | `AGENTS.md` |
 | **Grok** | `.grok` | `.grok/agents/*.md` | `GROK.md` |
-| **Local LLM** | `.atabey` | `.atabey/agents/*.md` | `LOCAL_AI.md` |
+| **Local LLM / Ollama** | `.atabey` | `.atabey/agents/*.md` | `LOCAL_AI.md` |
 | **OpenCode** | `.opencode` | `.opencode/agents/*.md` | `OPENCODE.md` |
 
+> `atabey init <platform> --unified` configures and mirrors agents across **all platforms simultaneously**.
+
+
 ---
 
 ## 📋 CLI Reference
 
 ```bash
 atabey init [adapter]        Initialize Atabey (--profile freelancer|team|enterprise)
-atabey mcp start             Start MCP server
-atabey mcp install           Generate mcp.json config
-atabey status                Show agent statuses and costs
+atabey mcp start|install     MCP server management
+atabey status                Show agent statuses and token usage
 atabey check                 Full health and compliance check
-atabey orchestrate           Start orchestration workflow loop
+atabey orchestrate           Start the orchestration workflow loop
 atabey approve <traceId>     Approve a blocked high-risk task
-atabey hitl answer "<text>"  Answer a pending ask_human question
-atabey @agent "task"         Send task directly to an agent
+atabey hitl status|answer|approve|reject   HITL responses & approvals
 atabey trace new|replay <id> Create/replay an execution trace
-atabey contract              Verify contract integrity
-atabey plan [task]           Create a task plan
-atabey memory update <sect> <content>  Update project memory
-atabey log [agent]           View agent logs
-atabey explorer graph|audit  Explore / audit codebase
-atabey security [path]       Run security audit
+atabey plan [submit <json>]  Create/submit a task plan
+atabey memory update <sect> <content>      Update project memory
+atabey git commit|sync       Git operations
+atabey explorer graph|audit  Explore / audit the codebase
+atabey knowledge <query>     Knowledge base search
+atabey log [@agent]          View agent logs
+atabey script <name> [dir]   Run a predefined script
+atabey security [path]       Run a security audit
+atabey compliance [path]     Run a compliance check
+atabey contract verify|update          Contract integrity (update re-syncs hash)
+atabey lint                  Run ESLint
+atabey db <status|migrate|verify|backup|restore>   SQLite schema, integrity & backups
+atabey secrets <list|set|get|delete|scan>          AES-256-GCM secret vault & leak scan
+atabey api <scan|list|drift|json>                  API endpoint catalog & contract drift
+atabey audit export|erase                          Signed audit export / KVKK-GDPR erasure
+atabey worktree <create|list|remove> [name]        Isolated agent worktrees
+atabey index [dir]           Index the codebase for RAG
+atabey coverage              Test coverage reports
+atabey quickstart            Generate an example task file
 ```
 
 ### `atabey init [adapter]` Options
@@ -185,6 +210,7 @@ atabey security [path]       Run security audit
 | `[adapter]` | `gemini`, `claude`, `cursor`, `grok`, `codex`, `local`, `antigravity-cli`, `opencode` | Target AI platform |
 | `--profile` | `freelancer`, `team`, `enterprise` | Preset agent group layout |
 | `--focus` | `fullstack`, `backend`, `frontend`, `mobile`, `mobile-fullstack` | Project type optimization |
+| `--backend` / `--frontend` / `--native` | `node|go|java|python|dotnet|rust` / `vite|next|vanilla` / `rust|go` | Application-tier scaffolding |
 | `--lang` | `tr`, `en` | Constitution language |
 | `--unified` | Flag | Multi-platform export |
 | `--yes` | Flag | Non-interactive mode |
@@ -194,58 +220,98 @@ atabey security [path]       Run security audit
 ## 🏗️ Architecture
 
 ```
-src/
-├── cli/
-│   ├── commands/        # 30+ CLI commands
-│   ├── platforms/       # 8 platform adapters
-│   └── utils/           # CLI utilities (compliance, memory, pkg, config)
-├── contracts/           # Zod schemas, task/API contracts
-├── modules/
-│   ├── agents/          # 13 agent definitions + registry
-│   ├── contracts/       # Module-level contracts
-│   ├── engines/         # 9 governance/orchestration engines
-│   ├── memory/          # Vector, project, specialty memory
-│   ├── providers/       # 7 LLM provider adapters
-│   └── skills/          # 11 core skills + platform mappings
-├── schema/              # JSON schemas
-├── shared/              # Audit, storage, PII, logger, constants, types
+packages/atabey/
+├── src/
+│   ├── cli/
+│   │   ├── commands/    # 27 CLI commands
+│   │   ├── platforms/   # 8 platform adapters
+│   │   └── utils/       # CLI utilities (compliance, memory, pkg, config)
+│   ├── modules/
+│   │   ├── agents/      # 13 agent definitions + registry
+│   │   ├── audit/       # HMAC-signed audit export
+│   │   ├── contracts/   # Task/API contracts (Zod)
+│   │   ├── engines/     # 9 governance/orchestration engines
+│   │   ├── memory/      # Vector, project, specialty memory
+│   │   ├── providers/   # 8 platform provider adapters
+│   │   ├── runtime/     # Headless CLI runtime, DAG dispatcher, worktrees
+│   │   └── skills/      # 11 core skills
+│   ├── schema/          # JSON schemas
+│   └── shared/          # Audit, storage, PII, logger, constants, types
 └── templates/
     ├── prompts/         # 9 prompt recipes
-    ├── standards/       # 30+ governance standards
+    ├── standards/       # 33 governance standards
     └── full/            # Full constitution template
 ```
 
----
+## 5 Core Capabilities
+
+| # | Capability | Description |
+|---|-----------|-------------|
+| 🛠️ | **40 MCP Tools** | File system, search, messaging, governance, memory, quality, network, orchestration |
+| 🧠 | **3-Layer Memory** | Vector (TF-IDF/OpenAI), project memory, specialty (agent learning) |
+| 🤖 | **13 Role Profiles** | 3-tier hierarchy (Supreme / Core / Recon) injected into the host LLM |
+| 🎯 | **11 Core Skills** | Platform-adaptive skills for AI coding environments |
+| 📚 | **30+ Standards** | Governance, security, architecture, compliance, deployment |
 
-## 🔒 Security & Technical Alignment
 
-### KVKK/GDPR Alignment
+## Security & Compliance
+
+### Deterministic, fail-closed governance
+- AST-based compliance scanning + strict TypeScript (**`any` is forbidden**, no `console.*` in production code)
+- **Fail-closed PolicyGate** + deny-by-default RBAC permission matrix (protected paths: `.env*`, `.git/`, `.ssh/`, `.atabey/*`, keys)
+- **Prompt-injection protection** (OWASP LLM01) on both input and response
+- **Secret-leak redaction** on tool output + AES-256-GCM local secret vault
+- **HMAC-SHA256** tamper-evident audit chain
+- SSRF-guarded HTTP proxy (private IP / metadata / DNS-rebinding protection)
+- **TLS 1.3 + optional mTLS** on the unified HTTP/SSE transport
+- Human-in-the-Loop: risk score ≥ 60 requires approval
+
+### KVKK / GDPR technical alignment
 
 | Feature | KVKK | GDPR | Status |
 |---------|------|------|--------|
 | PII Masking (20+ patterns) | Art. 4, 5, 11, 12 | Art. 5, 32 | ✅ |
-| Data Retention (30/90 days) | Art. 5, 7 | Art. 5, 17 | ✅ |
-| Right to Erasure | Art. 7 | Art. 17 | ✅ |
+| Data Retention (30–730 days, by category) | Art. 5, 7 | Art. 5, 17 | ✅ |
+| Right to Erasure (`atabey audit erase`) | Art. 7 | Art. 17 | ✅ |
 | Audit Trail | Art. 11 | Art. 30 | ✅ |
 | Data Classification | Art. 6 | Art. 9 | ✅ |
 
-### Zero Type Hole Policy
-- `any` type usage is **strictly forbidden**
-- All function inputs validated with Zod schemas
-- Type safety enforced in governance pipeline
+> Technical compliance tooling — not legal certification. Pair with your DPO / counsel.
+
+
+## Token Efficiency
+
+Atabey keeps token consumption low at three layers — **there is no monetary budget layer**:
+
+1. **Measurement** — every tool call is counted with the real `cl100k_base` BPE tokenizer (input/output split).
+2. **Limits** — per-provider context / response / per-minute / per-hour and tool-call rate ceilings (`context-optimizer.ts`). A breach sets a cooldown; hard blocking is opt-in via `ATABEY_TOKEN_BUDGET_ENFORCE=true`.
+3. **Savings** — `read_file` responses are smart-truncated (imports/types/signatures preserved), `http_proxy` caches + strips HTML, loop detection stops token-burning loops, and `get_task_context` / `get_symbol_outline` / `get_api_catalog` feed the AI pre-indexed context instead of forcing full-repo scans.
+
+Tune limits with `MCP_MAX_TOKENS_PER_MINUTE`, `MCP_MAX_TOKENS_PER_HOUR`, `MCP_MAX_CONTEXT_TOKENS`, `MCP_MAX_FILE_READ_SIZE`.
+
 
 ---
 
 ## 📦 Dependencies
 
-- **atabey-mcp**: MCP Server for tool execution and governance pipeline
-- **@modelcontextprotocol/sdk**: MCP protocol implementation
-- **better-sqlite3**: SQLite database for memory, audit, tasks
+- **atabey-shared**: Shared constants, storage, PII masking, audit and locking primitives
+- **atabey-mcp** _(optional)_: MCP server enabling `atabey mcp start` and the HTTP/SSE transport
+- **better-sqlite3**: SQLite database for memory, audit and tasks
 - **zod**: Runtime schema validation
 - **chalk**: Terminal UI styling
-- **ws**: WebSocket for real-time IPC and live event streaming
+- **js-yaml**: YAML parsing for the agent-registry validator
+- **typescript**: TypeScript Compiler API for AST compliance scanning
+
+## 🔗 Related Packages
+
+| Package | Role | Links |
+|---------|------|-------|
+| **atabey** | Core engine — CLI, agents, engines, orchestrator | [npm](https://www.npmjs.com/package/atabey) · [source](https://github.com/ysf-bkr/atabey/tree/main/packages/atabey) |
+| **atabey-mcp** | MCP server — 40 tools & governance pipeline | [npm](https://www.npmjs.com/package/atabey-mcp) · [source](https://github.com/ysf-bkr/atabey/tree/main/packages/atabey-mcp) |
+| **atabey-shared** | Shared utilities — constants, storage, PII, audit, locks | [npm](https://www.npmjs.com/package/atabey-shared) · [source](https://github.com/ysf-bkr/atabey/tree/main/packages/shared) |
+
+> Full bilingual documentation (TR + EN): **[github.com/ysf-bkr/atabey](https://github.com/ysf-bkr/atabey#readme)**
 
----
 
 ## License
 

package/dist/atabey/src/cli/commands/coverage.js

@@ -4,8 +4,8 @@ import path from "path";
 import { logger } from "../../shared/logger.js";
 import { getPackageRoot } from "../utils/pkg.js";
 import { UI } from "../utils/ui.js";
-function parseCoverageSummary() {
-    const coverageDir = path.join(getPackageRoot(), "coverage");
+function parseCoverageSummary(root) {
+    const coverageDir = path.join(root, "coverage");
     const summaryPath = path.join(coverageDir, "coverage-summary.json");
     if (!fs.existsSync(summaryPath))
         return null;
@@ -19,8 +19,8 @@ function parseCoverageSummary() {
         return null;
     }
 }
-function getFileCoverage() {
-    const coverageDir = path.join(getPackageRoot(), "coverage");
+function getFileCoverage(root) {
+    const coverageDir = path.join(root, "coverage");
     const summaryPath = path.join(coverageDir, "coverage-summary.json");
     if (!fs.existsSync(summaryPath))
         return [];
@@ -31,7 +31,7 @@ function getFileCoverage() {
             if (filePath === "total")
                 continue;
             const d = data;
-            files.push({ file: filePath.replace(process.cwd() + "/", ""), stmts: d.statements?.pct ?? 0, branch: d.branches?.pct ?? 0, funcs: d.functions?.pct ?? 0, lines: d.lines?.pct ?? 0, uncovered: [] });
+            files.push({ file: filePath.replace(root + "/", ""), stmts: d.statements?.pct ?? 0, branch: d.branches?.pct ?? 0, funcs: d.functions?.pct ?? 0, lines: d.lines?.pct ?? 0, uncovered: [] });
         }
         return files.sort((a, b) => a.lines - b.lines);
     }
@@ -40,8 +40,8 @@ function getFileCoverage() {
         return [];
     }
 }
-function getThresholdConfig() {
-    const vitestConfigPath = path.join(getPackageRoot(), "vitest.config.ts");
+function getThresholdConfig(root) {
+    const vitestConfigPath = path.join(root, "vitest.config.ts");
     if (!fs.existsSync(vitestConfigPath))
         return { lines: 80, functions: 80, branches: 80, statements: 80 };
     try {
@@ -75,22 +75,27 @@ function suggestImprovements(lowCoverageFiles) {
 }
 export async function coverageCommand() {
     const statusIcon = (current, threshold) => current >= threshold ? "[OK]" : "[LOW]";
-    const coverageDir = path.join(getPackageRoot(), "coverage");
+    // Analyze the user's current project (cwd); fall back to the Atabey package
+    // only when cwd is not a Node project.
+    const projectRoot = fs.existsSync(path.join(process.cwd(), "package.json"))
+        ? process.cwd()
+        : getPackageRoot();
+    const coverageDir = path.join(projectRoot, "coverage");
     if (!fs.existsSync(path.join(coverageDir, "coverage-summary.json"))) {
         UI.info("Running tests with coverage...");
         try {
-            execSync("npm run test:coverage", { stdio: "inherit", cwd: getPackageRoot() });
+            execSync("npm run test:coverage", { stdio: "inherit", cwd: projectRoot });
         }
         catch (err) {
             logger.warn("Coverage run failed (some tests may have failed), continuing with existing coverage data", err);
         }
     }
-    const summary = parseCoverageSummary();
+    const summary = parseCoverageSummary(projectRoot);
     if (!summary) {
         UI.info("No coverage data found. Run 'npm run test:coverage' first.");
         return;
     }
-    const thresholds = getThresholdConfig();
+    const thresholds = getThresholdConfig(projectRoot);
     UI.info("Test Coverage Analysis");
     const header = `  ${"Metric".padEnd(13)} | ${"Current".padEnd(7)} | ${"Threshold".padEnd(9)} | Status`;
     const separator = "  " + "-".repeat(header.length - 4);
@@ -100,7 +105,7 @@ export async function coverageCommand() {
         const threshold = thresholds[name.toLowerCase()];
         process.stdout.write(`  ${name.padEnd(13)} | ${String(val).padStart(7)}% | ${String(threshold).padStart(9)}% | ${statusIcon(val, threshold)}\n`);
     }
-    const files = getFileCoverage();
+    const files = getFileCoverage(projectRoot);
     const lowCoverageFiles = getLowCoverageFiles(files, thresholds.lines);
     if (lowCoverageFiles.length > 0) {
         UI.info(`Low Coverage Files (below ${thresholds.lines}%):`);

package/dist/atabey/src/cli/commands/coverage.js.map

@@ -1 +1 @@
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package/dist/atabey/src/cli/commands/lint.d.ts

@@ -1,4 +1,5 @@
 /**
- * Run ESLint for the project (same as npm run lint).
+ * Run ESLint for the current project (delegates to `npm run lint`).
+ * Gives a friendly message when the project has no `lint` script configured.
  */
 export declare function lintCommand(): Promise<void>;

package/dist/atabey/src/cli/commands/lint.js

@@ -1,12 +1,31 @@
 import { execSync } from "child_process";
+import fs from "fs";
+import path from "path";
 import { getPackageVersion } from "../utils/pkg.js";
 import { UI } from "../utils/ui.js";
 /**
- * Run ESLint for the project (same as npm run lint).
+ * Run ESLint for the current project (delegates to `npm run lint`).
+ * Gives a friendly message when the project has no `lint` script configured.
  */
 export async function lintCommand() {
     UI.info(`Running ESLint (v${getPackageVersion()})...`);
     const projectRoot = process.cwd();
+    let hasLintScript = false;
+    try {
+        const pkgPath = path.join(projectRoot, "package.json");
+        if (fs.existsSync(pkgPath)) {
+            const pkg = JSON.parse(fs.readFileSync(pkgPath, "utf8"));
+            hasLintScript = Boolean(pkg.scripts?.lint);
+        }
+    }
+    catch {
+        /* treat as no script */
+    }
+    if (!hasLintScript) {
+        UI.error("No \"lint\" script found in this project's package.json.");
+        UI.info("Add one (e.g. \"lint\": \"eslint .\") plus an eslint.config.js, then re-run `atabey lint`.");
+        process.exit(1);
+    }
     try {
         execSync("npm run lint", {
             cwd: projectRoot,

package/dist/atabey/src/cli/commands/lint.js.map

@@ -1 +1 @@
-{"version":3,"file":"lint.js","sourceRoot":"","sources":["../../../../../src/cli/commands/lint.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EAAE,iBAAiB,EAAE,MAAM,iBAAiB,CAAC;AACpD,OAAO,EAAE,EAAE,EAAE,MAAM,gBAAgB,CAAC;AAEpC;;GAEG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW;IAC7B,EAAE,CAAC,IAAI,CAAC,oBAAoB,iBAAiB,EAAE,MAAM,CAAC,CAAC;IACvD,MAAM,WAAW,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAClC,IAAI,CAAC;QACD,QAAQ,CAAC,cAAc,EAAE;YACrB,GAAG,EAAE,WAAW;YAChB,KAAK,EAAE,SAAS;YAChB,GAAG,EAAE,OAAO,CAAC,GAAG;SACnB,CAAC,CAAC;QACH,EAAE,CAAC,OAAO,CAAC,+BAA+B,CAAC,CAAC;IAChD,CAAC;IAAC,MAAM,CAAC;QACL,EAAE,CAAC,KAAK,CAAC,2DAA2D,CAAC,CAAC;QACtE,EAAE,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC;QACtC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;AACL,CAAC"}
+{"version":3,"file":"lint.js","sourceRoot":"","sources":["../../../../../src/cli/commands/lint.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EAAE,MAAM,IAAI,CAAC;AACpB,OAAO,IAAI,MAAM,MAAM,CAAC;AACxB,OAAO,EAAE,iBAAiB,EAAE,MAAM,iBAAiB,CAAC;AACpD,OAAO,EAAE,EAAE,EAAE,MAAM,gBAAgB,CAAC;AAEpC;;;GAGG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW;IAC7B,EAAE,CAAC,IAAI,CAAC,oBAAoB,iBAAiB,EAAE,MAAM,CAAC,CAAC;IACvD,MAAM,WAAW,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAElC,IAAI,aAAa,GAAG,KAAK,CAAC;IAC1B,IAAI,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,cAAc,CAAC,CAAC;QACvD,IAAI,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;YACzB,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,OAAO,EAAE,MAAM,CAAC,CAAyC,CAAC;YACjG,aAAa,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QAC/C,CAAC;IACL,CAAC;IAAC,MAAM,CAAC;QACL,wBAAwB;IAC5B,CAAC;IAED,IAAI,CAAC,aAAa,EAAE,CAAC;QACjB,EAAE,CAAC,KAAK,CAAC,0DAA0D,CAAC,CAAC;QACrE,EAAE,CAAC,IAAI,CAAC,4FAA4F,CAAC,CAAC;QACtG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;IAED,IAAI,CAAC;QACD,QAAQ,CAAC,cAAc,EAAE;YACrB,GAAG,EAAE,WAAW;YAChB,KAAK,EAAE,SAAS;YAChB,GAAG,EAAE,OAAO,CAAC,GAAG;SACnB,CAAC,CAAC;QACH,EAAE,CAAC,OAAO,CAAC,+BAA+B,CAAC,CAAC;IAChD,CAAC;IAAC,MAAM,CAAC;QACL,EAAE,CAAC,KAAK,CAAC,2DAA2D,CAAC,CAAC;QACtE,EAAE,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC;QACtC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;AACL,CAAC"}

package/dist/atabey/src/cli/commands/mcp.js

@@ -64,29 +64,62 @@ async function startMcpServer() {
         : [mcpPath];
     UI.success("MCP Server starting via " + runner + "...");
     logger.info("[MCP] Starting MCP server", { runner, path: mcpPath });
-    // MCP uses stdio transport:
-    // - stdin/stdout: JSON-RPC protocol (clean pipe to AI interface)
-    // - stderr: server diagnostics and logs
-    const child = spawn(runner, args, {
-        stdio: ["inherit", "inherit", "inherit"],
-        env: {
-            ...process.env,
-            ATABEY_PROJECT_ROOT: process.cwd(),
-            [MCP.TRANSPORT_ENV]: MCP.TRANSPORT_STDIO,
-            ATABEY_AUTO_START_ORCHESTRATOR: "true",
-        }
-    });
-    child.on("error", (err) => {
-        UI.error(`Failed to start MCP Server: ${err.message}`);
-        logger.error("[MCP] Failed to start server", err);
-        process.exit(70);
-    });
-    child.on("exit", (code) => {
-        if (code !== 0) {
-            UI.error(`MCP Server exited with code ${code}`);
-            process.exit(code || 70);
-        }
-    });
+    const MAX_RESTARTS = 5;
+    const STABLE_RUN_THRESHOLD_MS = 30000;
+    let restartCount = 0;
+    let isShuttingDown = false;
+    process.on("SIGINT", () => { isShuttingDown = true; process.exit(0); });
+    process.on("SIGTERM", () => { isShuttingDown = true; process.exit(0); });
+    function launchInstance() {
+        const startTime = Date.now();
+        const child = spawn(runner, args, {
+            stdio: ["inherit", "inherit", "inherit"],
+            env: {
+                ...process.env,
+                ATABEY_PROJECT_ROOT: process.cwd(),
+                [MCP.TRANSPORT_ENV]: MCP.TRANSPORT_STDIO,
+                ATABEY_AUTO_START_ORCHESTRATOR: "true",
+            }
+        });
+        child.on("error", (err) => {
+            UI.error(`Failed to start MCP Server: ${err.message}`);
+            logger.error("[MCP] Failed to start server", err);
+            if (!isShuttingDown && restartCount < MAX_RESTARTS) {
+                restartCount++;
+                UI.warning(`[MCP] Retrying startup in 1s (${restartCount}/${MAX_RESTARTS})...`);
+                setTimeout(launchInstance, 1000);
+            }
+            else {
+                process.exit(70);
+            }
+        });
+        child.on("exit", (code, signal) => {
+            if (isShuttingDown || code === 0 || signal === "SIGINT" || signal === "SIGTERM") {
+                process.exit(0);
+            }
+            const uptime = Date.now() - startTime;
+            if (uptime > STABLE_RUN_THRESHOLD_MS) {
+                restartCount = 0;
+            }
+            restartCount++;
+            const canRestart = process.env.ATABEY_AUTO_RESTART !== "false" && restartCount <= MAX_RESTARTS;
+            if (canRestart) {
+                UI.warning(`[MCP] Server crashed (exit code: ${code}). Auto-restarting in 1s (${restartCount}/${MAX_RESTARTS})...`);
+                logger.warn("[MCP] Auto-restarting crashed MCP server", { code, restartCount });
+                setTimeout(launchInstance, 1000);
+            }
+            else {
+                if (restartCount > MAX_RESTARTS) {
+                    UI.error(`[MCP] Maximum restart attempts (${MAX_RESTARTS}) reached. Aborting.`);
+                }
+                else {
+                    UI.error(`MCP Server exited with code ${code}`);
+                }
+                process.exit(code || 70);
+            }
+        });
+    }
+    launchInstance();
 }
 async function installMcpConfig() {
     process.stdout.write("[MCP] Installing Atabey MCP configuration...\n");