arkgate 3.6.0 → 3.7.0

package/dist/index.js

@@ -1,7 +1,7 @@
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+`).length,l={kind:"import",file:e.path,line:s,excerpt:i.excerpt},p=Qt(e.path,a,t);n.push({from:e.path,specifier:a,to:p?.path??null,resolution:p?"resolved":"unresolved",fromLayer:e.layer,toLayer:p?.layer??null,evidence:l})}return{edges:n,capabilityUses:r}}function Qt(e,t,n){let r=e.split("/");r.pop();for(let a of t.split("/"))a==="."||a===""||(a===".."?r.pop():r.push(a));let i=r.join("/");for(let a of[i,`${i}.ts`,`${i}.tsx`,`${i}.mts`,`${i}.cts`,`${i}/index.ts`,`${i}/index.tsx`]){let s=n.get(a);if(s)return s}}function rt(e,t){let n=[];for(let r of e){if(!r.to||!r.fromLayer||!r.toLayer)continue;let i=v(t.rules,r.fromLayer,r.toLayer,{fromPath:r.from,toPath:r.to,layers:t.layers});i&&n.push({ruleId:`layer-dependency:${i.from}->${i.to}`,message:i.message??`${i.from} must not depend on ${i.to}.`,edge:r,evidence:r.evidence})}return n}function fe(e,t){let n=typeof e=="string"?ve(e,t):oe(e,t);return{...n,policyHash:R(w(n.config))}}function it(e){let t=fe(e.baseConfig,e.baseSource??"base ark.config.json"),n=fe(e.candidateConfig,e.candidateSource??"candidate ark.config.json"),r=Me(t.config,n.config),i=r.findings.filter(l=>l.classification==="weakening"||l.classification==="judgment-required").map(l=>l.id).sort(),a=i.length>0,s=a&&Te(e.acknowledgement,{basePolicyHash:t.policyHash,candidatePolicyHash:n.policyHash,findingIds:i});return{schemaVersion:r.schemaVersion,basePolicyHash:t.policyHash,candidatePolicyHash:n.policyHash,classification:r.classification,findings:r.findings,blockingFindingIds:i,requiresAcknowledgement:a,acknowledged:s,valid:!a||s}}function Q(e){let t=e.files.map(p=>{let f=M(p.path);return{path:f,content:p.content,contentHash:R(p.content),layer:K(f,e.contract.config.layers)??null}}).sort((p,f)=>p.path.localeCompare(f.path)),n=new Map(t.map(p=>[p.path,p])),r=[],i=[];for(let p of t){let f=nt(p,n);r.push(...f.edges),i.push(...f.capabilityUses)}let a=rt(r,e.contract.config),s=new Map(e.contract.config.layers.map(p=>[p.name,p])),l=new Map(e.contract.config.layers.map(p=>[p.name,new Set(te(p))]));for(let p of i){let f=n.get(p.file)?.layer;if(!f)continue;let u=s.get(f),m=D(p.symbol,u?.forbiddenGlobals??[]);if(m){a.push({ruleId:"FORBIDDEN_GLOBAL",message:`${f} must not use module "${p.symbol}" because it is the import form of forbidden global "${m}".`,symbol:p.symbol,evidence:p.evidence});continue}l.get(f)?.has(p.capability)&&a.push({ruleId:"CAPABILITY_VIOLATION",message:`${f} denies the ${p.capability} capability; found import of "${p.symbol}".`,capability:p.capability,symbol:p.symbol,evidence:p.evidence})}return{ir:{schemaVersion:"1.0",policyHash:e.contract.policyHash,compilerOptionsHash:R(w(e.compilerOptions??{})),files:t,layers:e.contract.config.layers.map(p=>p.name),edges:r,capabilityUses:i,violations:a}}}function ue(e){let t=new Map(e.files.map(n=>[M(n.path),n]));for(let n of e.changes){let r=M(n.path);"delete"in n&&n.delete?t.delete(r):"content"in n&&t.set(r,{path:r,content:n.content})}return Q({contract:e.contract,files:[...t.values()],compilerOptions:e.compilerOptions})}function at(e){let t=`${e.evidence.file}:${e.evidence.line}`;if(!e.edge)return`${e.ruleId} at ${t}: ${e.message}`;let n=e.edge.to??e.edge.specifier;return`${e.ruleId} at ${t}: ${e.edge.from} imports ${n}. ${e.message}`}function De(e){let t=0,n=new Map,r=new Map,i=new Set,a=[],s=[],l=p=>{n.set(p,t),r.set(p,t),t+=1,a.push(p),i.add(p);for(let m of[...e.get(p)??[]].sort())e.has(m)&&(n.has(m)?i.has(m)&&r.set(p,Math.min(r.get(p)??0,n.get(m)??0)):(l(m),r.set(p,Math.min(r.get(p)??0,r.get(m)??0))));if(r.get(p)!==n.get(p))return;let f=[],u;do{if(u=a.pop(),u===void 0)break;i.delete(u),f.push(u)}while(u!==p);f.length>1&&s.push(f.sort())};for(let p of[...e.keys()].sort())n.has(p)||l(p);return s.sort((p,f)=>p[0].localeCompare(f[0])).map(p=>({ruleId:"CIRCULAR_DEPENDENCY",file:p[0],line:1,target:p.join(" \u2192 "),message:`Circular dependency among ${p.length} files: ${p.join(" \u2192 ")} \u2192 ${p[0]}.`,cycleKind:"value"}))}function ye(e){let t=e.contentViolations.map(a=>({...a})),n=(e.warnings??[]).map(a=>({...a})),r=new Map(e.files.map(a=>[a,new Set]));for(let a of e.edges){if(a.to&&a.to!==a.from&&!a.typeOnly&&r.has(a.from)&&r.get(a.from)?.add(a.to),!a.to||!a.toLayer)continue;let s=v(e.rules,a.fromLayer,a.toLayer,{fromPath:a.from,toPath:a.to,layers:e.config.layers});if(!s)continue;let l=!!s.peerIsolation;t.push({ruleId:"LAYER_IMPORT_VIOLATION",file:a.from,line:a.line,fromLayer:a.fromLayer,toLayer:a.toLayer,target:a.to,...a.typeOnly?{typeOnly:!0}:{},...a.targetTypeOnlyExports?{targetTypeOnlyExports:!0}:{},...a.sourcePureTypeModule?{sourcePureTypeModule:!0}:{},...a.namedBindingsTypeOnly?{namedBindingsTypeOnly:!0}:{},...!l&&a.portProofEligible?{portProofEligible:!0}:{},...a.kind?{edgeKind:a.kind}:{},...l?{peerIsolation:!0}:{},message:s.message??(l?`${a.fromLayer} must not ${a.kind} another slice of ${a.toLayer} (${a.from} \u2192 ${a.to}). Extract shared code or use events/ports across slices.`:`${a.fromLayer} must not ${a.kind} ${a.toLayer}.`)})}let i=String(e.config.cyclePolicy??"strict").toLowerCase();if(i!=="off"){let a=De(r);i==="soft"||i==="framework-soft"?n.push(...a.map(s=>({...s,message:`${s.message} (soft cycle policy \u2014 advisory only; set cyclePolicy: "strict" to fail the check)`,failsStrict:!1}))):t.push(...a)}return{violations:t,warnings:n,safety:e.safety}}function ot(e){switch(e.ruleId){case"LAYER_IMPORT_VIOLATION":return e.typeOnly||e.targetTypeOnlyExports||e.namedBindingsTypeOnly?"Move the referenced type to a mutually allowed layer, use `import type`, then preflight again.":e.peerIsolation?"Extract the shared dependency to a shared layer, then preflight again.":`Define a port in ${e.fromLayer??"the source layer"}, inject the ${e.toLayer??"outer-layer"} implementation, then preflight again.`;case"FORBIDDEN_GLOBAL":return`Inject ${e.target??"the capability"} through a port, then preflight again.`;case"CAPABILITY_VIOLATION":return`Define a ${String(e.capability??"capability")} port in ${e.fromLayer??"the walled layer"}, bind the implementation outside it, then preflight again.`;case"CIRCULAR_DEPENDENCY":return"Extract the shared dependency into a third module, then preflight again.";case"RAW_EVENT_PUBLISH":return"Publish through a registered intent creator, then run Ark again.";case"PUBLISH_MISSING_SOURCE":return"Add metadata.source to the publish call, then run Ark again.";default:return`Resolve ${typeof e.ruleId=="string"&&e.ruleId.length>0?e.ruleId:"ARK_UNKNOWN"} without weakening ark.config.json, then run Ark again.`}}function st(e){return R(w(e.map(({path:t,contentHash:n})=>({path:t,contentHash:n}))))}function ct(e){let t=Q(e),n=new Map(t.ir.files.map(o=>[o.path,o])),r=[],i=new Set,a=[];for(let o of e.changes){let g=o.path.replace(/\\/g,"/"),y=M(o.path);if(!y||y===".."||y.startsWith("../")||g.startsWith("/")||/^[A-Za-z]:\//.test(g)||g.includes("\0")){a.push({ruleId:"INVALID_CHANGE_PATH",file:"<change-set>",line:1,message:"Every change requires a safe, non-empty project-relative path."});continue}if(i.has(y)){a.push({ruleId:"DUPLICATE_CHANGE_PATH",file:y,line:1,message:`The atomic change set contains more than one operation for ${y}.`});continue}i.add(y),"delete"in o&&o.delete&&!n.has(y)&&a.push({ruleId:"DELETE_TARGET_MISSING",file:y,line:1,message:`Cannot delete ${y} because it is not present in the supplied base tree.`}),r.push("delete"in o&&o.delete?{path:y,delete:!0}:{path:y,content:"content"in o?o.content:""})}e.changes.length===0&&a.push({ruleId:"CHANGE_SET_EMPTY",file:"<change-set>",line:1,message:"Atomic preflight requires at least one create, update, or delete."});let s=ue({...e,changes:r}),l=new Map(s.ir.files.map(o=>[o.path,o])),p=s.ir.violations.filter(o=>o.ruleId==="CAPABILITY_VIOLATION"||o.ruleId==="FORBIDDEN_GLOBAL").map(o=>{let g=l.get(o.evidence.file)?.layer;return{ruleId:o.ruleId,file:o.evidence.file,line:o.evidence.line,target:o.symbol,...o.capability?{capability:o.capability}:{},...g?{fromLayer:g}:{},edgeKind:"import",message:o.message}}),f=ye({config:e.contract.config,rules:e.contract.config.rules,files:s.ir.files.map(o=>o.path),contentViolations:p,edges:s.ir.edges.filter(o=>!!o.fromLayer).map(o=>({from:o.from,fromLayer:o.fromLayer,...o.to?{to:o.to}:{},...o.toLayer?{toLayer:o.toLayer}:{},line:o.evidence.line,kind:"import"}))}),u=r.map(o=>{let g=M(o.path),y=n.get(g),I=l.get(g);return{path:g,operation:"delete"in o&&o.delete?"delete":y?"update":"create",...y?{beforeContentHash:y.contentHash}:{},...I?{candidateContentHash:I.contentHash}:{}}}).sort((o,g)=>o.path.localeCompare(g.path)),m=[...a,...f.violations].map(o=>({...o,nextAction:ot(o)})),c=e.changeMap?le({changeMap:e.changeMap,changes:u,baseDependencies:t.ir.edges.flatMap(o=>o.to?[{from:o.from,to:o.to}]:[]),candidateDependencies:s.ir.edges.flatMap(o=>o.to?[{from:o.from,to:o.to}]:[])}):void 0;return{schemaVersion:"1.0",valid:m.length===0&&(c?.structurallyConverged??!0),readOnly:!0,policyHash:e.contract.policyHash,compilerOptionsHash:s.ir.compilerOptionsHash,baseTreeHash:st(t.ir.files),candidateTreeHash:st(s.ir.files),...e.changeMap?{changeMapHash:e.changeMap.hash}:{},...c?{convergence:c}:{},changes:u,violations:m,warnings:f.warnings}}function S(e,t,n={}){return{ruleId:e,message:t,...n}}function lt(e){let{config:t,rules:n,files:r,manifest:i}=e,a=[];if(t.dynamicImportAllowlist!==void 0&&(!Array.isArray(t.dynamicImportAllowlist)||t.dynamicImportAllowlist.some(o=>typeof o!="string"))&&a.push(S("CONFIG_INVALID_DYNAMIC_IMPORT_ALLOWLIST","dynamicImportAllowlist must be an array of file globs.")),t.safety!==void 0&&(t.safety===null||typeof t.safety!="object"||Array.isArray(t.safety)))a.push(S("CONFIG_INVALID_SAFETY","safety must be an object."));else if(t.safety)for(let o of["maxTsSuppressions","maxAnyCasts"]){let g=t.safety[o];g!==void 0&&(!Number.isInteger(g)||g<0)&&a.push(S("CONFIG_INVALID_SAFETY_THRESHOLD",`safety.${o} must be a non-negative integer.`))}let s=Array.isArray(t.layers)?t.layers:[],l=Array.isArray(i?.architecture?.layers)?i.architecture.layers:[],p=new Set([...s.map(o=>o.name).filter(Boolean),...l.map(o=>o.name).filter(o=>!!o)]);s.length===0&&a.push(S("CONFIG_NO_LAYERS","No file layers are configured; ark-check cannot classify files for import-boundary enforcement."));let f=new Set,u=new Set;for(let o of s){if(!o.name){a.push(S("CONFIG_LAYER_WITHOUT_NAME","A configured layer is missing a name."));continue}f.has(o.name)&&u.add(o.name),f.add(o.name),o.forbiddenGlobals!==void 0&&(!Array.isArray(o.forbiddenGlobals)||o.forbiddenGlobals.some(y=>typeof y!="string"))&&a.push(S("CONFIG_INVALID_FORBIDDEN_GLOBALS",`Layer "${o.name}" has an invalid forbiddenGlobals value; expected an array of strings (e.g. ["fetch", "Date.now"]). The entry is ignored.`,{layer:o.name}));let g=Array.isArray(o.patterns)?o.patterns:[];if(g.length===0){a.push(S("CONFIG_LAYER_WITHOUT_PATTERNS",`Layer "${o.name}" has no file patterns and will never classify files.`,{layer:o.name}));continue}for(let y of g){let I;try{I=z(y)}catch(x){a.push(S("CONFIG_INVALID_LAYER_PATTERN",`Layer "${o.name}" has an invalid pattern "${y}": ${x instanceof Error?x.message:String(x)}`,{layer:o.name,pattern:y}));continue}!r.some(x=>I.test(x))&&!o.optional&&a.push(S("CONFIG_LAYER_PATTERN_NO_MATCHES",`Layer "${o.name}" pattern "${y}" matched no included files.`,{layer:o.name,pattern:y,failsStrict:!1}))}}for(let o of u)a.push(S("CONFIG_DUPLICATE_LAYER",`Layer "${o}" is configured more than once.`,{layer:o}));if(p.size>0)for(let o of n??[])o.from&&!p.has(o.from)&&a.push(S("CONFIG_RULE_UNKNOWN_FROM_LAYER",`Rule references unknown source layer "${o.from}".`,{fromLayer:o.from,toLayer:o.to})),o.to&&!p.has(o.to)&&a.push(S("CONFIG_RULE_UNKNOWN_TO_LAYER",`Rule references unknown target layer "${o.to}".`,{fromLayer:o.from,toLayer:o.to}));let m=new Set;if(s.length>1)for(let o of r){let g=-1,y=[];for(let I of s)for(let x of I.patterns??[]){if(!z(x).test(o))continue;let d=ke(x);d>g?(g=d,y=[I.name]):d===g&&!y.includes(I.name)&&y.push(I.name)}y.length>1&&m.add([...y].sort().join(" + "))}m.size>0&&a.push(S("CONFIG_AMBIGUOUS_LAYERS",`Some files match multiple layers at equal specificity; classification falls back to declaration order. Disambiguate the overlapping patterns: ${[...m].join(", ")}.`,{pairs:[...m]}));let c=r.filter(o=>!K(o,s));return c.length>0&&a.push(S("CONFIG_UNCLASSIFIED_FILES",`${c.length} included source file(s) are not matched by any configured layer; ark-check will not enforce import rules for those source files.`,{count:c.length,samples:c.slice(0,5)})),a}export{_e as ANALYSIS_IR_SCHEMA_VERSION,yt as ARK_ANALYSIS_RESULT_SCHEMA,dt as ARK_ANALYSIS_RESULT_SCHEMA_VERSION,$e as ARK_CONFIG_SCHEMA,_t as ARK_CONFIG_SCHEMA_VERSION,Ne as POLICY_DELTA_SCHEMA_VERSION,le as analyzeArchitectureConvergence,ue as analyzeChange,it as analyzePolicyDelta,Q as analyzeProject,Me as classifyArkPolicyDelta,lt as collectAnalysisConfigWarnings,G as collectForbiddenCapabilityUses,qe as createAICodeGate,ut as createAdapterResult,ce as createArchitectureProfile,Qe as createArchitectureProfileFromArkConfig,Xe as createElevenLayerArkConfig,De as detectArchitectureCycles,R as deterministicHash,se as elevenLayerProfile,ye as evaluateArchitectureGraph,at as explainViolation,j as extractSemanticDependencies,oe as loadArkConfigContract,fe as loadContract,ve as parseArkConfigJson,Te as policyDeltaAcknowledgementMatches,ct as preflightChange,w as stableSerialize,me as toAdapterDiagnostic,pt as version};

package/docs/agent-guide.md

@@ -112,7 +112,7 @@ Smell **ids** (stable JSON) plus **outcome** lines (plain language, Q02) on each
 | id | Outcome (what to do / why the AI struggles) |
 |----|-----------------------------------------------|
 | `io-under-application` | Business code reaches DB/APIs directly — put I/O behind a port/adapter |
-| `handler-in-persistence` | HTTP handlers under storage folders — move handlers to API/UI |
+| `handler-in-persistence` | Static framework HTTP imports (`next/server`), `defineRoute` calls, or handler bodies under Persistence-role storage folders — move transport to API/UI |
 | `god-module` | Huge multi-job files — split the pilot by concern |
 | `domain-logic-in-ui` | can*/calculate* in UI — move pure rules into Domain |
 | `facade-sql-in-routes` | Routes import ORM/SQL — keep queries in repository/adapter |
@@ -164,6 +164,29 @@ never move. `reshapePilot.nextPilot` is a **proposed** one-at-a-time card (`move
 write gate + atomic preflight; merges are `/ark-architect` judgment cards. `notAScore`, never a
 verdict/`designFitness` input; there is no apply path.
 
+**Reshape decision memory (Y01):** when the team accepts, defers, or rejects that target, record
+the explicit verdict in `.ark/reshape-decisions.json` using the card's exact
+`decisionTarget` (`concept` + complete sorted `anchors`), a non-empty `reason`, and optional
+`reviewBy` (`YYYY-MM-DD`). Current rejected/deferred decisions hide only the repeated pilot card;
+the physical facts keep rendering. Accepted keeps the same `/ark-loop` path. Expired/malformed
+dates and decisions whose anchor set changed no longer apply; doctor/report list them. The golden
+pattern is never parsed to infer a decision — cite it in `reason` when it explains the layout.
+
+```json
+{
+  "schemaVersion": "1",
+  "decisions": [
+    {
+      "concept": "projects",
+      "anchors": ["src/app/api", "src/lib/api-handlers", "src/lib/repositories"],
+      "verdict": "rejected",
+      "reason": "These role directories are our thin-shell-handlers-data golden layout.",
+      "reviewBy": "2027-01-31"
+    }
+  ]
+}
+```
+
 **Governance weight (W02):** `contractHealth.governanceWeight` reports raw facts (layers, rules,
 governed files, files/layer, rules/layer) plus a fixed band (`heavy` / `typical` / `light` /
 `unknown`) with fixed wording. It is explicitly `notAScore` — never a gate input. Read `heavy` as
@@ -368,7 +391,7 @@ npx arkgate-check --install-agent-gates --tools claude,cursor,codex,grok
 |------|-----------------|-------------|
 | Claude Code | `.claude/settings.json` hook + `.mcp.json` / `claude mcp add` | `.claude/skills/<name>/SKILL.md` |
 | Cursor | `.cursor/mcp.json` + `.cursor/rules/ark.mdc` | `.cursor/commands/` |
-| OpenAI Codex | `$CODEX_HOME/config.toml` (global; absolute `--root`; multi-project → secondary `ark_<slug>` unless `--force`; doctor defers non-temp home gaps when session host ≠ Codex — see [ai-gates.md](ai-gates.md)) | **Repo:** `.agents/skills/<name>/SKILL.md`; **home:** `$CODEX_HOME/skills/<name>/SKILL.md` (`--codex-home`) |
+| OpenAI Codex | `.codex/config.toml` (project primary, relative `--root .`); optional legacy `$CODEX_HOME/config.toml` fallback uses absolute roots and scoped secondaries — see [ai-gates.md](ai-gates.md) | **Repo:** `.agents/skills/<name>/SKILL.md`; **home:** `$CODEX_HOME/skills/<name>/SKILL.md` (`--codex-home`) |
 | **Grok Build** | `.grok/hooks/ark-write-gate.json` + `.grok/config.toml` / `.mcp.json` | `.grok/skills/<name>/SKILL.md` |
 
 This is a path reference, not a guarantee table. Full copy-paste setups:
@@ -630,7 +653,15 @@ modules the way your build does, but is intentionally not yet a full type-graph
 
 Repeat runs are cached in `node_modules/.cache/ark-check.json` — unchanged files skip the
 parse, while import edges always re-resolve against the live filesystem so the cache can
-never hide a new violation. `--no-cache` disables it.
+never hide a new violation. Cache schema v9 also preserves each file's parse-diagnostic count
+and binds it to the TypeScript parser version, so a warm doctor run cannot silently turn
+unreadable governed syntax into a clean claim after a parser change.
+`--no-cache` disables it.
+
+`ark-check --doctor --json` reports that syntax honesty under `doctor.parseHealth`: exact
+scanned/affected/diagnostic totals plus a deterministic top-12 file list and honest overflow.
+It is advisory in this release — it does not change the verdict, design fitness, pattern bets,
+or violations — but an affected governed file must not be described as successfully inspected.
 
 `ark-check --json` also reports `warnings` for incomplete governance coverage: missing
 layers, unclassified included files, unmatched layer patterns, duplicate layers, and rules

package/docs/ai-gates.md

@@ -263,23 +263,22 @@ npx ark-check --install-agent-gates --tools codex
 The generated hook includes `--hook-repair`, so a rejected patch carries the same structured
 repair envelope as Claude and Grok. Codex still needs hook trust enabled for the project.
 
-Unlike Claude/Cursor (project-local MCP files), **Codex loads MCP servers only from
-`$CODEX_HOME/config.toml`** (default `~/.codex/config.toml`) — a **global** home file.
-Hand-editing with relative `--root .` is wrong: Codex does not use the project as cwd, so
-`.` resolves against the launch directory. Prefer absolute paths, or let Ark write them:
+Modern Codex resolves MCP servers from the active project's `.codex/config.toml`. Ark writes
+that file with relative paths, so every repository owns its primary `ark` binding without
+competing for a global slot:
 
 ```bash
 npx ark-check --install-agent-gates --tools codex
-# optional: install /ark-* skills into $CODEX_HOME/skills/<name>/SKILL.md
+# optional: install /ark-* skills and a legacy global MCP fallback under $CODEX_HOME
 npx ark-check --install-agent-gates --codex-home
 ```
 
-Example shape (absolute paths — also what install writes):
+Project-scoped shape:
 
 ```toml
 [mcp_servers.ark]
 command = "npx"
-args = ["arkgate-mcp", "--root", "/absolute/path/to/project", "--config", "/absolute/path/to/project/ark.config.json"]
+args = ["arkgate-mcp", "--root", ".", "--config", "ark.config.json"]
 ```
 
 Then **restart Codex** — it does not hot-load MCP servers. Expect resource `ark://manifest`
@@ -288,11 +287,12 @@ and tools `validate_code`, `ark_check`, `ark_coverage`, `ark_place`.
 Codex uses the best-effort local patch hook plus advisory MCP for discovery/validation and
 `ark-check` as the hard merge backstop. Register all three as soon as the repo is adopted.
 
-### Multi-project Codex (home config last-wins)
+### Legacy Codex home fallback
 
-`[mcp_servers.ark]` is a **single primary** binding. If project A is already registered and
-you install gates for project B **without** `--force`, Ark does **not** silently steal
-primary A. It writes a **scoped secondary** table:
+`$CODEX_HOME/config.toml` remains supported for older clients or an explicit global binding.
+Because it is global, its `[mcp_servers.ark]` is a single primary. If project A is already
+registered and you run `--codex-home` for project B without `--force`, Ark preserves A and
+writes a scoped secondary table:
 
 ```toml
 [mcp_servers.ark]            # primary — still project A
@@ -304,13 +304,15 @@ primary A. It writes a **scoped secondary** table:
 
 | Goal | Command |
 |------|---------|
-| Add B without moving primary | `ark-check --install-agent-gates --tools codex` (no `--force`) |
-| Make B the primary binding | `ark-check --install-agent-gates --tools codex --force` |
+| Install the normal project binding | `ark-check --install-agent-gates --tools codex` |
+| Add B to the legacy home fallback | `ark-check --install-agent-gates --codex-home` |
+| Make B the legacy home primary | `ark-check --install-agent-gates --codex-home --force` |
 | Doctor: primary points at another permanent project | gap id `codex-home-multi-project` (warn if no secondary yet and session host is unknown/Codex; **info + `deferred`** when the session host is known and not Codex — e.g. Grok/Claude/Cursor; info if a scoped secondary is already present) |
-| When using Codex: refresh home skills/MCP | `ark-check --install-agent-gates --skills-only --codex-home --force` |
+| When using Codex: refresh home skills | `ark-check --install-agent-gates --skills-only --codex-home --force` |
 
-`ark-check --doctor` surfaces the multi-project state so you are not left thinking B owns
-`ark://manifest` when only a secondary table exists. **Deferred (fix when using Codex):**
+When a valid project `.codex/config.toml` exists, doctor treats it as the effective binding and
+does not report an unrelated home primary. Without a project binding, doctor surfaces the
+legacy multi-project state. **Deferred (fix when using Codex):**
 non-temp Codex-home gaps (`codex-home-multi-project`, stale `$CODEX_HOME/skills`) are
 severity **info**, marked `deferred: true`, and omitted from Top actions when the session
 host is known and not Codex — `/ark-upgrade` on Grok/Claude is not Incomplete because of
@@ -444,11 +446,12 @@ export default [
 
 - Relative imports are resolved to on-disk TS/JS targets; package bare imports are left to CI/TS.
 - Type-only and value forbidden edges both error (same pass/fail as `arkgate-check`).
-- `no-forbidden-globals` only applies when the file’s layer declares `forbiddenGlobals` (or you pass a `globals` option). Layers without a purity list are not inventively restricted.
+- `no-forbidden-globals` applies from the file layer’s `forbiddenGlobals`; the `globals` option is only a standalone fallback when no project config applies, never an override that weakens the project contract. Layers without either surface are not inventively restricted. `process` also owns exact value imports of `process` / `node:process`; type-only forms, subpaths, and `child_process` stay excluded. If the same layer also denies the `process` capability, this rule is the single `FORBIDDEN_GLOBAL` voice.
 - Without `ark.config.json`, `no-domain-infra-imports` falls back to a domain→infra path heuristic.
 
 Rule ids are `ark/<kebab-name>`. Individual rules are also on `ark.rules` if you wire them by hand.
-Prefer keeping editor + CI on the same `ark.config.json` — do not maintain a parallel globals list unless you intentionally override.
+Prefer keeping editor + CI on the same `ark.config.json`. Use the rule-local `globals` list only
+for standalone linting where no project contract applies.
 
 ## CI backstop
 

package/docs/configuration.md

@@ -87,6 +87,12 @@ Layer fields:
   (`network`, `filesystem`, `clock`, `randomness`, `environment`, `process`, `persistence`);
   `pure: true` is the shorthand that denies all seven. Absence changes no verdict.
 
+`forbiddenGlobals: ["process"]` covers the ambient binding plus exact runtime imports from
+`process` and `node:process`. It does not imply the broader `process` capability wall: subpaths
+and `child_process` remain outside this narrow dual, and statement-level `import type` /
+`export type` declarations are excluded. Declare `capabilities.deny: ["process"]` when the whole
+process module-capability family must be denied.
+
 Rule fields:
 
 - `from`, `to`, `allowed`, `message`, `peerIsolation`, `sliceFolders`

package/docs/enthusiast/how-to-agent-gates.md

@@ -21,7 +21,7 @@ Installs:
 |------|-------------|
 | Claude Code | `.claude/settings.json`, `.claude/skills/` |
 | Cursor | `.cursor/mcp.json`, `.cursor/rules/ark.mdc`, `.cursor/commands/` |
-| Codex | `.codex/hooks.json`, `.agents/skills/`; MCP in `$CODEX_HOME/config.toml` |
+| Codex | `.codex/hooks.json`, `.codex/config.toml`, `.agents/skills/` |
 | **Grok Build** | `.grok/config.toml`, `.grok/hooks/`, `.grok/skills/` |
 
 See the [canonical host support matrix](../../README.md#host-enforcement-support) for the exact

package/docs/package-surface.md

@@ -17,20 +17,21 @@ hardening guide remains repository-hosted rather than duplicated in the gate tar
 | Surface | How you use it | Stability notes |
 |---------|----------------|-----------------|
 | **CLI** | `arkgate` / `arkgate-check` (aliases `ark` / `ark-check`) | Flags and human text may improve; **JSON output shapes** for `--json` (check, doctor, plan, coverage, recommend) are stable within a major. Additive fields OK; removals/renames are major. |
-| **Doctor design fitness (P02+)** | `ark-check --doctor --json` → `doctor.designFitness`, `doctor.designSmells[]` | Additive. Stable smell `id`s: `io-under-application`, `handler-in-persistence`, `god-module`, `domain-logic-in-ui`, `facade-sql-in-routes`, `mixed-pattern-cluster`, `soft-contract`. Each smell has `evidence[]`, `fix`, technical `message`, and plain-language **`outcome`** (Q02). Does **not** fail the gate by itself. |
+| **Doctor design fitness (P02+)** | `ark-check --doctor --json` → `doctor.designFitness`, `doctor.designSmells[]` | Additive. Stable smell `id`s: `io-under-application`, `handler-in-persistence`, `god-module`, `domain-logic-in-ui`, `facade-sql-in-routes`, `mixed-pattern-cluster`, `soft-contract`. Y02 extends `handler-in-persistence` to static ES imports/re-exports of framework HTTP surfaces (`next/server`), `defineRoute` calls, and existing handler bodies inside Persistence-role layers or specific persistence paths; `require()` and dynamic `import()` are outside this narrow advisory, and a generic `Infrastructure` role alone is not Persistence. Persistence candidates are filtered and sorted before the bounded content scan so large application prefixes cannot hide the advisory. The detector inspects the first 800 sorted Persistence candidates; later candidates are uninspected, so absence of this advisory is not whole-tree proof above that envelope. Each smell has `evidence[]`, `fix`, technical `message`, and plain-language **`outcome`** (Q02). Does **not** fail the gate by itself. |
 | **Post-green path (Q01)** | `doctor.postGreenPath`, `doctor.primaryNextAction`, `doctor.healthyFinishedForbidden` | Additive when `designFitness.designWeak`. Single Shape door (`id: clarify-for-ai`): explore shape-focus → dual-plan B → autopilot only with OK. Never empty plan A = healthy finished. |
 | **Golden pattern (Q03)** | Optional `.ark/golden-pattern.json`; doctor JSON `doctor.goldenPattern`; MCP `ark_place` / `ark_prepare_write` → `goldenPattern` | Additive, **advisory for NEW code only**. Required fields: `name`, `norm`; optional `newCodeHome`, `examplePath`, `schemaVersion`. **Absent is normal** (no claim). Never ENFORCE; never clears design-weak. Malformed → `invalid: true`, not silent guidance. |
 | **Plan pattern B (P03+)** | `ark-check --plan --json` → `plan.patternBets[]`, `plan.goal.designWeak` | Additive. Each bet: `id`, `smellId`, `pilot`, `evidence`, `successSignal`, `killSwitch`, **`neverMechanicalSafe: true`**, `class: "judgment"`. **Never** auto-applied by loop/autoPatch; not a `remediationKind` mechanical-safe. `goal.met` remains edge honesty only. |
 | **Pilot loop (Q04)** | `plan.pilotLoop` / `doctor.pilotLoop` | Additive. When design-weak: `active`, `oneAtATime`, `neverMechanicalSafe`, **`nextPilot`** extraction-card fields (`pilotTarget`, `smellId`, `move`, `successSignal`, `killSwitch`, `doNot[]`). **One pilot → re-doctor**; never multi-pilot batch; never mechanical-safe. |
 | **AI-velocity eval (Q05)** | `npm run eval:ai-velocity` → `eval/ai-velocity-report.json` | Fixture-measured (no live LLM). Same feature scenario on design-weak vs golden-path arms; metric **`placementTurns`** (agent-equivalent). Golden must be strictly better. Method string lives next to the number. Does not weaken the gate. |
 | **Contract health (W01)** | `ark-check --doctor --json` → `doctor.contractHealth`; optional `.ark/contract-smell-acks.json` | Additive, **advisory only** — meta-lint of the contract itself (layer-name heuristics; imprecision costs a warning line, never a verdict); never changes the verdict, `designFitness`, or `patternBets`. Stable smell ids: `contract-bidirectional-allow`, `contract-peripheral-depends-core`, `contract-lateral-adapter-allow`, `contract-dead-rule`; each smell has `severity`, `evidence[]` (sorted, honest `…(+N more)` truncation), `fix`, `message`, plain-language `outcome`, and `acknowledgedEdges` (acks applied to that id). **X03/X06**: the lateral smell does not fire on an adapter reaching its **own family's infra base** — the target reads `<Family><InfraWords…>` (**every** remaining target token an infra word: `Infra(structure)`/`Base`/`Core`/`Shared`/`Common`/`Kernel`/`Platform`/`Foundation`) and the source carries the family token **anywhere** in its name (X06, field: `HoursPersistenceAdapters -> PersistenceInfrastructure` — mid-name families). `PaymentsCoreAdapters` is still a sibling; cross-family edges, non-infra siblings, and the reverse (base → member) still fire. Acknowledgments live in the bounded sidecar (`{ acks: [{ id, edge, reason, reviewBy? }] }`, ≤64 KB / ≤200 entries; bidirectional edges order-insensitive, exact two segments); `contractHealth.acknowledged` counts **applied** acks only (stale acks count 0). **X02 ack lifecycle**: optional `reviewBy` (`YYYY-MM-DD`, strict round-trip validation — `2026-02-30` is malformed) — past the date the ack **stops applying** and the smell returns with `(ack expired …)` annotated evidence; among dated entries a fresh re-ack wins over a dead one, but once ANY dated ack exists for an edge the dated entries govern — a leftover undated duplicate cannot resurrect an expired exception. `detectContractSmells` defaults `today` to the real clock (pass `null` to disable expiry); `analyzeContractSmells` stays pure (clock injected). `contractHealth.ackLifecycle` reports `{ undated, malformed, expiredCount, expired[], staleCount, stale[] (lists capped at 12) }`; undated acks apply (backward compatible) but surface in doctor, report, and the fossilization note even when every smell is suppressed. **X05**: an ack matching **no detected edge** (orphaned by a fixed contract or quieted heuristic, unknown id, or typo'd edge) is `stale` — it suppresses nothing and doctor/report list the exact entries to fix or delete, even at zero visible smells. Malformed `reviewBy` never applies (fail-loud, like a sloppy edge); non-string `reviewBy` → whole file `invalid`. **Absent is normal**; malformed file or edge grammar → ignored + `ackFile.invalid` where applicable, never silent suppression. |
-| **Effect capabilities (U03)** | Analysis API `collectCapabilityUses(ts, sourceFile)` + Domain vocabulary (`CAPABILITY_IDS`, `capabilityForModuleSpecifier`, `capabilityForAmbientName`, `lowerForbiddenGlobal`); pure-engine `ir.capabilityUses` | Additive within IR `1.0`. Seven **closed** ids: `network`, `filesystem`, `clock`, `randomness`, `environment`, `process`, `persistence` (ADR 0009). Direct evidence only — transitive inference never detects. The symbol-aware collector covers ambient globals (shadowing/type-only/globalThis-alias precision from the S05/C04 machinery) plus imports; the compiler-free IR engine carries **import-based** uses only (exact module or subpath match, never substring; textual `import type`/`export type` erasure — ANY braced named-binding list stays a value import there; template-literal bodies are skipped entirely (specifiers inside `${…}` are the symbol path's job); `require(…)` counts as capability evidence but never creates a graph edge on the pure path). **U04 walls are opt-in:** per-layer `capabilities: { deny: [...] }` or the dual-depth sugar `pure: true` (denies all seven); absence changes no verdict. `CAPABILITY_VIOLATION` is judgment-class (never mechanical-safe) with a port-injection `nextAction`; D7 dedup — an ambient use covered by the layer's `forbiddenGlobals` reports only `FORBIDDEN_GLOBAL`. Atomic preflight blocks denied capabilities across a complete multi-file candidate (import-based on the pure path; ambient adds on the symbol-aware CLI/hook path). T01 policy-delta classifies the ambient surface on **coverage atoms** (`ambient:<entry>` prefix-expanded + `import:<capability>`): any lost atom is weakening (`fetch`→`XMLHttpRequest`, `Date`→`Date.now`, wall→fg all weaken; finding path `$.layers[name].capabilities`); fg → equivalent-or-stronger wall never needs an acknowledgment; unlowerable custom globals keep raw key comparison. |
+| **Effect capabilities (U03/Y08)** | Analysis API `collectCapabilityUses(ts, sourceFile)` + Domain vocabulary (`CAPABILITY_IDS`, `capabilityForModuleSpecifier`, `capabilityForAmbientName`, `forbiddenGlobalForModuleSpecifier`, `lowerForbiddenGlobal`); pure-engine `ir.capabilityUses` | Additive within IR `1.0`. Seven **closed** ids: `network`, `filesystem`, `clock`, `randomness`, `environment`, `process`, `persistence` (ADR 0009). Direct evidence only — transitive inference never detects. The symbol-aware collector covers ambient globals (shadowing/type-only/globalThis-alias precision from the S05/C04 machinery) plus imports; the compiler-free IR engine carries **import-based** uses only (exact module or subpath match, never substring; textual `import type`/`export type` erasure — ANY braced named-binding list stays a value import there; template-literal bodies are skipped entirely (specifiers inside `${…}` are the symbol path's job); `require(…)` counts as capability evidence but never creates a graph edge on the pure path). **U04 walls are opt-in:** per-layer `capabilities: { deny: [...] }` or the dual-depth sugar `pure: true` (denies all seven); absence changes no verdict. `CAPABILITY_VIOLATION` is judgment-class (never mechanical-safe) with a port-injection `nextAction`; D7 dedup — evidence already owned by the layer's `forbiddenGlobals` reports only `FORBIDDEN_GLOBAL`. Y08 adds one deliberately narrow import dual: `forbiddenGlobals: ["process"]` owns exact value imports of `process` and `node:process`, but not subpaths or `child_process`; statement-level `import type` / `export type` remains erased on every path (the existing pure-IR all-named limitation above is unchanged). Atomic preflight blocks denied capabilities and that exact dual across a complete multi-file candidate (import-based on the pure path; other ambient evidence adds on the symbol-aware CLI/hook path). T01 policy-delta classifies the surface on **coverage atoms** (`ambient:<entry>` prefix-expanded, narrow `import-exact:<specifier>` duals, and `import:<capability>` for a complete wall): any lost atom is weakening (`fetch`→`XMLHttpRequest`, `Date`→`Date.now`, wall→fg all weaken; finding path `$.layers[name].capabilities`); fg → equivalent-or-stronger wall never needs an acknowledgment; unlowerable custom globals keep raw key comparison. |
 | **Ambient state (U05)** | `ark-check --doctor --json` → `doctor.ambientState`; optional `.ark/ambient-state-acks.json` | Additive, **advisory only and opt-in**: only layers declared `pure: true` are scanned; the MVP shape is module-scope `let`/`var`. Findings carry `file`/`line`/`name`/`kind` (sorted, capped with honest `truncated` count). Acknowledgments live in the bounded sidecar (`{ acks: [{ file, name, reason }] }`, ≤64 KB / ≤200 entries); `acknowledged` counts applied acks; malformed file suppresses nothing. When TypeScript is unavailable the sensor reports `available: false` instead of guessing. **No strict mode exists** — A5: strictness requires a completed corpus and an explicit later decision. |
-| **Physical cohesion + reshape pilot (X04)** | `ark-check --doctor --json` → `doctor.physicalCohesion` (incl. `reshapePilot`); report section `data-advisory="physicalCohesion"` | Additive, **advisory only** — `notAScore`; never feeds the verdict, `designFitness`, or `patternBets`. Signal is **concentration, not volume**: concept clusters per anchor directory (deterministic path/name tokenization; framework filenames like `route.ts` take the topmost meaningful path segment — ADR 0010 D2). Fixed corpus-calibrated thresholds (`maxCluster ≥ 40` OR ≥2 anchors ≥ 20, ADR 0010 D3); findings ranked and capped (top 5, honest `truncated`). Anchors under `app/`/`pages/` are `fixedByConvention` and never move (D7). `reshapePilot` is **proposed, never applied** (`neverMechanicalSafe`): one Q04-style pilot card at a time targeting the smallest convention-free anchor, with `moveSample`/`movesTotal`, `successSignal`, `killSwitch`, `doNot[]`; real moves run only through the write gate + atomic preflight via `/ark-loop`; merges are `/ark-architect` judgment cards, never a codemod (D6). |
+| **Parse health (Y03)** | `ark-check --doctor --json` → `doctor.parseHealth`; report section `data-advisory="parseHealth"` | Additive, **advisory only**. The existing architecture AST contributes only `parseDiagnosticCount` per governed file (cache schema v9, bound to the TypeScript parser version; no raw diagnostics, second parse, or `tsc`). JSON reports `scannedFiles`, `affectedFiles`, `diagnosticCount`, deterministic top-12 `{ file, diagnosticCount }` entries, and honest `truncated`/`overflow`; missing/unsafe counts or unavailable scan evidence produce `available: false`, never a clean claim or a non-JSON-safe number. Parse health never changes the verdict, `ok`, violations, `designFitness`, or `patternBets`. |
+| **Physical cohesion + reshape pilot (X04/Y01)** | `ark-check --doctor --json` → `doctor.physicalCohesion` (`reshapePilot`, `reshapeDecisions`); optional `.ark/reshape-decisions.json`; report section `data-advisory="physicalCohesion"` | Additive, **advisory only** — `notAScore`; never feeds the verdict, `designFitness`, or `patternBets`. Signal is **concentration, not volume**: concept clusters per anchor directory (deterministic path/name tokenization; framework filenames like `route.ts` take the topmost meaningful path segment — ADR 0010 D2). Fixed corpus-calibrated thresholds (`maxCluster ≥ 40` OR ≥2 anchors ≥ 20, ADR 0010 D3); findings ranked and capped (top 5, honest `truncated`). Anchors under `app/`/`pages/` are `fixedByConvention` and never move (D7). `reshapePilot` is **proposed, never applied** (`neverMechanicalSafe`): one Q04-style pilot card at a time targeting the smallest convention-free anchor, with `moveSample`/`movesTotal`, `successSignal`, `killSwitch`, `doNot[]`; real moves run only through the write gate + atomic preflight via `/ark-loop`; merges are `/ark-architect` judgment cards, never a codemod (D6). **Y01 verdict memory:** bounded sidecar `{ schemaVersion?: "1", decisions: [{ concept, anchors, verdict: "accepted"|"deferred"|"rejected", reason, reviewBy? }] }` (≤64 KiB / ≤200 unique targets). Identity is concept + complete sorted anchor set, never counts/change-map evidence. Current rejected/deferred records suppress pilot pressure only; accepted keeps the existing path. Expired/malformed/stale/invalid records suppress nothing; lifecycle and decisions render in doctor/report. Explicit only — golden-pattern prose never infers a verdict. |
 | **Capability walls, every adapter (U04+U06)** | CLI scan, pure IR engine, atomic preflight, `ark-mcp --hook` / MCP gate (`capabilityWalls`), ESLint `ark/no-denied-capabilities` | The same opt-in deny set enforces across every surface: hook/MCP and CLI cover ambient + import evidence (symbol-aware); the pure engine, preflight, and ESLint cover the import dimension (documented envelope). Dual depth everywhere: plain port hint (`FIX_HINTS`/`suggestion`) + stable JSON (`ruleId`, `capability`, `fixClass: inject-port`, deterministic `nextAction`). |
 | **Hook-path budgets (U06)** | `npm run bench:hook-path`; `eval/performance/hook-budgets.v1.json`; CI job "Hook-path end-to-end budgets" | Measures the COMPLETE pre-tool paths as fresh child processes (hook cold/warm, doctor cold) at 1k/10k. D5 method locked: ceilings are Linux-baseline p95 + fixed headroom, set once per cycle, never ratcheted; scenarios without a recorded baseline stay in RECORDING mode and cannot fail CI. |
 | **Governance weight (W02)** | `ark-check --doctor --json` → `doctor.contractHealth.governanceWeight` | Additive, **advisory only** — raw facts (`declaredLayers`, `populatedLayers`, `governedFiles`, `rules`, `deniedEdges`, `allowedEdges`, `filesPerLayer`, `rulesPerLayer`) plus a fixed comparative band `weight: heavy | typical | light | unknown` and its fixed `note`. Fixed deterministic thresholds: **heavy** = fewer than 25 governed files per declared layer AND (6+ layers OR 4+ well-formed rules per layer); **light** = at most 2 layers over 150+ governed files; **unknown** = no layers or no governed files; everything else is **typical** (banding uses raw ratios; the reported ratios are rounded for display). `notAScore: true` is explicit: never a composite score, ranking, or gate input; the heavy note asks to justify NEW layers/rules and never suggests deleting working ones. Human doctor prints a line only for `heavy`/`light`. |
-| **Report parity (X01)** | `ark-check --report` → advisory sections (`data-advisory="contractHealth\|ambientState"`, nested `governanceWeight`) + layer wall badges | The report is a rendering of doctor truth. **Standing rule:** every doctor advisory ships with its report section — enforced by the `reportParity` guard, which enumerates the doctor's advisory keys and fails on any missing section. |
+| **Report parity (X01)** | `ark-check --report` → advisory sections (`data-advisory="contractHealth\|ambientState\|parseHealth"`, nested `governanceWeight`) + layer wall badges | The report is a rendering of doctor truth. **Standing rule:** every doctor advisory ships with its report section — enforced by the `reportParity` guard, which enumerates the doctor's advisory keys and fails on any missing section. |
 | **MCP tools** | `arkgate-mcp` / `ark://…` resources | Tool names and primary argument shapes are stable within a major. |
 | **`ark.config.json`** | Layer globs, rules, include/exclude, forbiddenGlobals, intent prefixes, `peerIsolation`, `dynamicImportAllowlist`, `safety` thresholds | Versioned by `schemaVersion`; unknown fields fail closed and migrations preserve the previous supported major. |
 | **Policy transition analysis (T01, 3.1.0)** | `analyzePolicyDelta(...)`; MCP `ark_policy_delta`; CLI `--policy-base` / `--policy-base-ref` / `--policy-ack`; check JSON `policyDelta` | Additive schema `1.0`. Classifications and finding ids are deterministic. Weakening/judgment requires an acknowledgement bound to both policy hashes and the exact blocking finding set. |
@@ -100,5 +101,5 @@ production deployment would need to satisfy; it is not a readiness certification
 ## Release notes (maintainers)
 
 Ship notes for a version live under [releases/](./releases/) (latest:
-[3.4.0.md](./releases/3.4.0.md)).
+[3.7.0.md](./releases/3.7.0.md)).
 Publish path: signed annotated tag → GitHub Release → `publish-npm.yml` (see [CONTRIBUTING.md](../CONTRIBUTING.md)).