app-builder-lib 27.0.0-alpha.7 → 27.0.0-alpha.9

package/dist/node-module-collector/nodeModulesCollector.js.map

@@ -1 +1 @@
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{ exists, log, retry, stripSensitiveEnvVars, TmpDir } from \"builder-util\"\nimport _fsExtra from \"fs-extra\"\nimport { Lazy } from \"lazy-val\"\nimport * as path from \"path\"\nimport { hoist, type HoisterResult, type HoisterTree } from \"./hoist.js\"\nimport { LogMessageByKey, ModuleManager } from \"./moduleManager.js\"\nimport { getPackageManagerCommand, PM } from \"./packageManager.js\"\nimport { streamSpawnToFile } from \"../util/streamSpawnToFile.js\"\nimport type { Dependency, DependencyGraph, NodeModuleInfo, PackageJson } from \"./types.js\"\nimport { isPackageCompatible } from \"../util/archCompatibility.js\"\n\n/** Target arch/platform used to drop `cpu`/`os`-incompatible packages while collecting. */\nexport interface ArchFilter {\n  cpu: string | null\n  os: string\n}\n\nexport abstract class NodeModulesCollector<ProdDepType extends Dependency<ProdDepType, OptionalDepType>, OptionalDepType> {\n  private readonly nodeModules: NodeModuleInfo[] = []\n  protected readonly allDependencies: Map<string, ProdDepType> = new Map()\n  protected readonly productionGraph: DependencyGraph = {}\n  protected readonly cache: ModuleManager = new ModuleManager()\n\n  protected isHoisted = new Lazy<boolean>(async () => {\n    const { manager } = this.installOptions\n    const command = getPackageManagerCommand(manager)\n    const config = (await this.asyncExec(command, [\"config\", \"list\"])).stdout\n    if (config == null) {\n      log.debug({ manager }, \"unable to determine node-linker setting; assuming non-hoisted (virtual store) layout\")\n      return false\n    }\n    const lines = Object.fromEntries(config.split(\"\\n\").map(line => line.split(\"=\").map(s => s.trim())))\n    if (lines[\"node-linker\"] === \"hoisted\") {\n      log.debug({ manager }, \"node_modules are hoisted\")\n      return true\n    }\n    return false\n  })\n\n  constructor(\n    protected readonly rootDir: string,\n    private readonly tempDirManager: TmpDir\n  ) {}\n\n  /**\n   * Retrieves and collects all Node.js modules for a given package.\n   *\n   * This method orchestrates the entire module collection process by:\n   * 1. Fetching the dependency tree from the package manager\n   * 2. Collecting all dependencies recursively\n   * 3. Extracting workspace references if applicable\n   * 4. Building a production dependency graph\n   * 5. Hoisting the dependencies to their final locations\n   * 6. Resolving and returning module information\n   */\n  public async getNodeModules({\n    packageName,\n    archFilter,\n    ignoredDependencies,\n  }: {\n    packageName: string\n    archFilter?: ArchFilter\n    ignoredDependencies?: ReadonlyArray<string>\n  }): Promise<{\n    nodeModules: NodeModuleInfo[]\n    logSummary: ModuleManager[\"logSummary\"]\n  }> {\n    const tree: ProdDepType = await this.getDependenciesTree(this.installOptions.manager)\n\n    await this.collectAllDependencies(tree, packageName)\n    const realTree: ProdDepType = this.getTreeFromWorkspaces(tree, packageName)\n    await this.extractProductionDependencyGraph(realTree, packageName)\n\n    this.markExcludedModules(this.productionGraph, packageName, ignoredDependencies ?? [])\n\n    const hoisterResult: HoisterResult = hoist(this.transformToHoisterTree(this.productionGraph, packageName), {\n      check: log.isDebugEnabled,\n    })\n\n    await this._getNodeModules(hoisterResult.dependencies, this.nodeModules, archFilter)\n\n    log.debug({ packageName, depCount: this.nodeModules.length }, \"node modules collection complete\")\n\n    return { nodeModules: this.nodeModules, logSummary: this.cache.logSummary }\n  }\n\n  public abstract readonly installOptions: {\n    manager: PM\n    lockfile: string\n  }\n\n  protected abstract getArgs(): string[]\n  protected abstract extractProductionDependencyGraph(tree: Dependency<ProdDepType, OptionalDepType>, dependencyId: string): Promise<void>\n  protected abstract collectAllDependencies(tree: Dependency<ProdDepType, OptionalDepType>, appPackageName: string): Promise<void>\n\n  /**\n   * Retrieves the dependency tree from the package manager.\n   *\n   * Executes the appropriate package manager command to fetch the dependency tree and writes\n   * the output to a temporary file. Includes retry logic to handle transient failures such as\n   * incomplete JSON output or missing files. Will retry up to 1 time with exponential backoff.\n   */\n  protected async getDependenciesTree(pm: PM): Promise<ProdDepType> {\n    const command = getPackageManagerCommand(pm)\n    const args = this.getArgs()\n\n    const tempOutputFile = await this.tempDirManager.getTempFile({\n      prefix: path.basename(command, path.extname(command)),\n      suffix: \"output.json\",\n    })\n\n    return retry(\n      async () => {\n        await this.streamCollectorCommandToFile(command, args, this.rootDir, tempOutputFile)\n        const shellOutput = await _fsExtra.readFile(tempOutputFile, { encoding: \"utf8\" })\n        const result = await Promise.resolve(this.parseDependenciesTree(shellOutput))\n        return result\n      },\n      {\n        retries: 1,\n        interval: 2000,\n        backoff: 2000,\n        shouldRetry: async (error: any) => {\n          const fields: Record<string, string> = { error: error.message, tempOutputFile, cwd: this.rootDir, packageManager: pm }\n\n          if (!(await exists(tempOutputFile))) {\n            log.debug(fields, \"dependency tree output file missing, retrying\")\n            return true\n          }\n\n          const fileContent = await _fsExtra.readFile(tempOutputFile, { encoding: \"utf8\" })\n          fields.fileContentLength = fileContent.length.toString()\n\n          if (fileContent.trim().length === 0) {\n            log.debug(fields, \"dependency tree output file empty, retrying\")\n            return true\n          }\n\n          // extract small start/end sample for debugging purposes (e.g. polluted console output)\n          const lines = fileContent.split(\"\\n\")\n          const lineSampleSize = Math.min(5, lines.length / 2)\n          if (2 * lineSampleSize > 5) {\n            fields.sampleStart = lines.slice(0, lineSampleSize).join(\"\\n\")\n            fields.sampleEnd = lines.slice(-lineSampleSize).join(\"\\n\")\n          } else {\n            fields.content = fileContent\n          }\n\n          // Both indicate truncated/polluted PM output (a transient that re-running the command clears).\n          if (error.message?.includes(\"Unexpected end of JSON input\") || error.message?.includes(\"No JSON content found in output\")) {\n            log.debug(fields, \"JSON parse error in dependency tree, retrying\")\n            return true\n          }\n\n          log.error(fields, \"error parsing dependencies tree\")\n          return false\n        },\n      }\n    )\n  }\n\n  /**\n   * Parses the dependencies tree from shell command output.\n   *\n   **/\n  protected parseDependenciesTree(shellOutput: string): ProdDepType | Promise<ProdDepType> {\n    return this.extractJsonFromPollutedOutput<ProdDepType>(shellOutput)\n  }\n\n  protected extractJsonFromPollutedOutput<T>(shellOutput: string): T {\n    const consoleOutput = shellOutput.trim()\n    try {\n      // Please for the love of all that is holy, this should cover 99% of cases where npm/pnpm/yarn output is clean JSON\n      return JSON.parse(consoleOutput)\n    } catch {\n      // ignore\n    }\n\n    // DEDICATED FALLBACK FOR POLLUTED OUTPUT, non-trivial to implement correctly, not needed in most cases, and highly inefficient\n\n    // Find the first index that starts with { or [\n    const bracketOpen = Math.max(consoleOutput.indexOf(\"{\"), 0)\n    const bracketOpenSquare = Math.max(consoleOutput.indexOf(\"[\"), 0)\n    const start = Math.min(bracketOpen, bracketOpenSquare) // always non-negative due to Math.max above\n\n    for (let i = start; i < consoleOutput.length; i++) {\n      const slice = consoleOutput.slice(start, i + 1)\n      try {\n        return JSON.parse(slice)\n      } catch {\n        // ignore, try next\n      }\n    }\n    throw new Error(\"No JSON content found in output\")\n  }\n\n  protected cacheKey(pkg: Pick<ProdDepType, \"name\" | \"version\" | \"path\">): string {\n    const rel = path.relative(this.rootDir, pkg.path)\n    return `${pkg.name}::${pkg.version}::${rel ?? \".\"}`\n  }\n\n  // We use the key (alias name) instead of value.name for npm aliased packages\n  // e.g., { \"foo\": { name: \"@scope/bar\", ... } } should be stored as \"foo@version\"\n  protected normalizePackageVersion(key: string, pkg: ProdDepType) {\n    return { id: `${key}@${pkg.version}`, pkgOverride: { ...pkg, name: key } }\n  }\n\n  /**\n   * Determines if a given dependency is a production dependency of a package.\n   *\n   * Checks both the dependencies and optionalDependencies of a package to see if\n   * the specified dependency name is listed.\n   *\n   * @param depName - The name of the dependency to check\n   * @param pkg - The package to search for the dependency in\n   * @returns True if the dependency is found in either dependencies or optionalDependencies, false otherwise\n   */\n  protected isProdDependency(depName: string, pkg: ProdDepType): boolean {\n    const prodDeps = { ...pkg.dependencies, ...pkg.optionalDependencies }\n    return prodDeps[depName] != null\n  }\n\n  protected async locatePackageWithVersion(depTree: Pick<ProdDepType, \"name\" | \"version\" | \"path\">): Promise<{ packageDir: string; packageJson: PackageJson } | null> {\n    const result = await this.cache.locatePackageVersion({\n      parentDir: depTree.path,\n      pkgName: depTree.name,\n      requiredRange: depTree.version,\n    })\n    return result\n  }\n  /**\n   * Parses a dependency identifier string into name and version components.\n   *\n   * Handles both scoped packages (e.g., \"@scope/pkg@1.2.3\") and regular packages (e.g., \"pkg@1.2.3\").\n   * If the identifier is malformed or cannot be parsed, defaults to treating the entire string as\n   * the package name with an \"unknown\" version.\n   */\n  protected parseNameVersion(identifier: string): { name: string; version: string } {\n    let at: number\n    if (identifier.startsWith(\"@\")) {\n      // Scoped package: find the version separator after the scope (e.g. \"@scope/pkg@1.2.3\")\n      const slashIndex = identifier.indexOf(\"/\")\n      if (slashIndex === -1) {\n        return { name: identifier, version: \"unknown\" }\n      }\n      at = identifier.indexOf(\"@\", slashIndex + 1)\n    } else {\n      at = identifier.indexOf(\"@\")\n    }\n    if (at <= 0) {\n      return { name: identifier, version: \"unknown\" }\n    }\n    return { name: identifier.slice(0, at), version: identifier.slice(at + 1) }\n  }\n\n  /**\n   * Retrieves the dependency tree and handles workspace package self-references.\n   *\n   * If the project is a workspace project, this method removes the root package's self-reference\n   * from the dependency tree to avoid circular dependencies. It promotes the root package's\n   * direct dependencies to the top level of the tree.\n   *\n   * @param tree - The original dependency tree\n   * @param packageName - The name of the package to check for and remove from the tree\n   * @returns The extracted dependency subtree\n   */\n  protected getTreeFromWorkspaces(tree: ProdDepType, packageName: string): ProdDepType {\n    if (tree.workspaces && tree.dependencies) {\n      for (const [key, value] of Object.entries(tree.dependencies)) {\n        if (key === packageName) {\n          return value\n        }\n      }\n    }\n\n    return tree\n  }\n\n  /**\n   * Flags which modules must be omitted from the *copied* app output for the given `ignoredNames` by\n   * setting an `excluded` marker on the pre-hoist graph nodes.\n   *\n   * Only a *top-level* production dependency (one the app itself declares) can be excluded, together\n   * with its exclusively-owned transitive subtree. A package that is merely a transitive dependency of\n   * a non-excluded production dependency is never excluded, even if its name is in `ignoredNames`:\n   * only the root's own edges to ignored names are severed, so anything still reachable through another\n   * production dependency stays reachable and is kept.\n   *\n   * Runs on the pre-hoist graph, where the true parent->child edges still exist, so a shared (deduped)\n   * transitive dependency remains reachable and is kept while an ignored package's exclusive subtree\n   * becomes unreachable and is flagged.\n   */\n  private markExcludedModules(graph: DependencyGraph, rootId: string, ignoredNames: ReadonlyArray<string>): void {\n    const ignored = new Set(ignoredNames)\n    if (ignored.size === 0) {\n      return\n    }\n\n    const rootDeps = graph[rootId]?.dependencies ?? []\n    const ignoredRootEdges = new Set(rootDeps.filter(dep => ignored.has(this.parseNameVersion(dep).name)))\n    if (ignoredRootEdges.size === 0) {\n      return\n    }\n\n    const reachable = new Set<string>()\n    const stack: string[] = [rootId]\n    while (stack.length > 0) {\n      const id = stack.pop()!\n      if (reachable.has(id)) {\n        continue\n      }\n      reachable.add(id)\n      const node = graph[id]\n      if (node != null) {\n        for (const dep of node.dependencies) {\n          if (id === rootId && ignoredRootEdges?.has(dep)) {\n            continue\n          }\n          if (!reachable.has(dep)) {\n            stack.push(dep)\n          }\n        }\n      }\n    }\n    for (const id of Object.keys(graph)) {\n      if (!reachable.has(id)) {\n        graph[id].excluded = true\n      }\n    }\n\n    // Only directly-declared deps that actually ended up excluded (i.e. not still reachable via a kept\n    // dependency) are surfaced to the user; their exclusive transitive subtree is omitted from the log.\n    // Report the full `name@version` graph id — like the other logSummary buckets — so the log stays\n    // truthful when another version of the same name still ships via a kept dependency (e.g. `debug@4`\n    // excluded while `debug@3` remains bundled).\n    const topLevelExcluded = new Set<string>()\n    for (const dep of ignoredRootEdges) {\n      if (!reachable.has(dep)) {\n        topLevelExcluded.add(dep)\n      }\n    }\n    if (topLevelExcluded.size > 0) {\n      this.cache.logSummary[LogMessageByKey.PKG_EXCLUDED_IGNORED].push(...Array.from(topLevelExcluded).sort())\n    }\n  }\n\n  private transformToHoisterTree(obj: DependencyGraph, key: string, nodes: Map<string, HoisterTree> = new Map()): HoisterTree {\n    let node = nodes.get(key)\n    const { name, version } = this.parseNameVersion(key)\n\n    if (!node) {\n      node = {\n        name,\n        identName: name,\n        reference: version,\n        dependencies: new Set<HoisterTree>(),\n        peerNames: new Set<string>(),\n      }\n\n      nodes.set(key, node)\n\n      const deps = (obj[key] || {}).dependencies || []\n      for (const dep of deps) {\n        const child = this.transformToHoisterTree(obj, dep, nodes)\n        // a package that declares itself as a dependency (e.g. libsql) must not produce a self-edge\n        if (child !== node) {\n          node.dependencies.add(child)\n        }\n      }\n    }\n\n    return node\n  }\n\n  private async _getNodeModules(dependencies: Set<HoisterResult>, result: NodeModuleInfo[], archFilter?: ArchFilter, ancestors: Set<HoisterResult> = new Set()) {\n    if (dependencies.size === 0) {\n      return\n    }\n\n    for (const d of dependencies.values()) {\n      // dependency cycles (including self-references) must not recurse\n      if (ancestors.has(d)) {\n        continue\n      }\n      const reference = [...d.references][0]\n      const key = `${d.name}@${reference}`\n      // Normalize the path to handle mixed separators from pnpm JSON output on Windows\n      const rawPath = this.allDependencies.get(key)?.path\n      const p = rawPath != null ? path.normalize(rawPath) : undefined\n      if (p === undefined) {\n        this.cache.logSummary[LogMessageByKey.PKG_NOT_FOUND].push(key)\n        continue\n      }\n\n      // fix npm list issue\n      // https://github.com/npm/cli/issues/8535\n      if (!(await this.cache.exists[p])) {\n        this.logMissingDependency(key)\n        continue\n      }\n\n      const dir = await this.cache.realPath[p]\n\n      // Drop packages whose declared `cpu`/`os` is incompatible with the target arch/platform (and their\n      // subtree). npm/pnpm install only the host's platform-specific optional packages, so without this an\n      // arm64-only binary (e.g. `@esbuild/darwin-arm64`) would be bundled into the x64 build too — and into\n      // both slices of a universal build, which `@electron/universal` then refuses to merge. Reuses the\n      // memoized `package.json` cache populated during collection.\n      if (archFilter != null) {\n        const pkgJson = await this.cache.json[path.join(dir, \"package.json\")]\n        if (pkgJson != null && !isPackageCompatible(pkgJson, archFilter.cpu, archFilter.os)) {\n          this.cache.logSummary[LogMessageByKey.PKG_INCOMPATIBLE_PLATFORM].push(key)\n          continue\n        }\n      }\n\n      const node: NodeModuleInfo = {\n        name: d.name,\n        version: reference,\n        dir,\n        excluded: this.productionGraph[key]?.excluded,\n      }\n      result.push(node)\n      if (d.dependencies.size > 0) {\n        node.dependencies = []\n        ancestors.add(d)\n        await this._getNodeModules(d.dependencies, node.dependencies, archFilter, ancestors)\n        ancestors.delete(d)\n      }\n    }\n    result.sort((a, b) => a.name.localeCompare(b.name))\n  }\n\n  /**\n   * Records a dependency that could not be resolved on disk in the log summary.\n   *\n   * A platform-specific package name (e.g. `sass-embedded-linux-x64`) is always classified as a\n   * platform-specific optional dependency. Otherwise, `isDeclaredOptional` decides the bucket: a\n   * caller that *knows* the dependency was declared in `optionalDependencies` (e.g. the pnpm\n   * collector's optional-dependency check) reports a missing *optional* dependency — an expected\n   * condition — rather than the `PKG_NOT_ON_DISK` warning reserved for genuinely missing\n   * production dependencies.\n   */\n  protected logMissingDependency(pkgName: string, isDeclaredOptional = false) {\n    const PLATFORM_PACKAGE_RE = /(linux|win32|darwin|freebsd|android)[-_](x64|arm64|ia32|arm|ppc64|s390x|loong64|riscv64|universal)/\n    const diskLogKey = PLATFORM_PACKAGE_RE.test(pkgName)\n      ? LogMessageByKey.PKG_OPTIONAL_PLATFORM_NOT_INSTALLED\n      : isDeclaredOptional\n        ? LogMessageByKey.PKG_OPTIONAL_NOT_INSTALLED\n        : LogMessageByKey.PKG_NOT_ON_DISK\n    this.cache.logSummary[diskLogKey].push(pkgName)\n  }\n\n  protected async asyncExec(command: string, args: string[], cwd: string = this.rootDir): Promise<{ stdout: string | undefined; stderr: string | undefined }> {\n    const file = await this.tempDirManager.getTempFile({ prefix: \"exec-\", suffix: \".txt\" })\n    try {\n      await this.streamCollectorCommandToFile(command, args, cwd, file)\n      const result = await _fsExtra.readFile(file, { encoding: \"utf8\" })\n      return { stdout: result?.trim(), stderr: undefined }\n    } catch (error: any) {\n      log.debug({ error: error.message }, \"failed to execute command\")\n      return { stdout: undefined, stderr: error.message }\n    }\n  }\n\n  /**\n   * Executes a package-manager command and streams its stdout to a file.\n   *\n   * Delegates the spawn/stream/flush mechanics (including the Windows `powershell.exe -EncodedCommand`\n   * wrapping) to {@link streamSpawnToFile}, and layers on the collector-specific interpretation of the\n   * result: corepack is silenced for these invocations, `npm list` exit code 1 is tolerated, and any\n   * stderr is surfaced as a collector warning only when the exit code is genuinely unexpected.\n   *\n   * @param command - The command to execute\n   * @param args - Array of command-line arguments\n   * @param cwd - The working directory to execute the command in\n   * @param tempOutputFile - The path to the temporary file where stdout will be written\n   * @returns Promise that resolves when the command completes successfully or rejects if it fails\n   * @throws {Error} If the child process spawn fails or exits with a non-zero, unexpected code\n   */\n  protected async streamCollectorCommandToFile(command: string, args: string[], cwd: string, tempOutputFile: string) {\n    // Derive execName from the original command so the npm-list shouldIgnore check below keys off the\n    // real invocation (e.g. \"npm\"), not the \"powershell\" wrapper streamSpawnToFile uses on Windows.\n    const execName = path.basename(command, path.extname(command))\n\n    const { code, stderr } = await streamSpawnToFile(command, args, cwd, tempOutputFile, {\n      // Package manager invocations do not need signing/publishing credentials. Silence corepack:\n      // strict=0 so a project's `packageManager` pin can't abort our read-only queries, and the\n      // download prompt/notice off so corepack doesn't flood stdout/stderr with activation chatter.\n      ...stripSensitiveEnvVars(process.env),\n      COREPACK_ENABLE_STRICT: \"0\",\n      COREPACK_ENABLE_DOWNLOAD_PROMPT: \"0\",\n    })\n\n    // https://github.com/npm/npm/issues/17624\n    const shouldIgnore = code === 1 && \"npm\" === execName.toLowerCase() && args.includes(\"list\")\n    if (shouldIgnore) {\n      log.debug(null, \"`npm list` returned non-zero exit code, but it MIGHT be expected (https://github.com/npm/npm/issues/17624). Check stderr for details.\")\n    }\n    if (stderr.length > 0) {\n      log.debug({ stderr }, \"note: there was node module collector output on stderr\")\n      // Only surface stderr as a user-visible warning when the exit code itself is unexpected.\n      // When shouldIgnore is true (npm list exit code 1) the stderr is an anticipated side\n      // effect of package-manager features like yarn resolutions or npm overrides that cause\n      // npm to report ELSPROBLEMS for aliased packages it considers \"invalid\".\n      if (!shouldIgnore) {\n        this.cache.logSummary[LogMessageByKey.PKG_COLLECTOR_OUTPUT].push(stderr)\n      }\n    }\n    if (code !== 0 && !shouldIgnore) {\n      throw new Error(`Node module collector process exited with code ${code}:\\n${stderr}`)\n    }\n  }\n}\n"]}
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{ exists, log, retry, stripSensitiveEnvVars, TmpDir } from \"builder-util\"\nimport _fsExtra from \"fs-extra\"\nimport { Lazy } from \"lazy-val\"\nimport * as path from \"path\"\nimport { hoist, type HoisterResult, type HoisterTree } from \"./hoist.js\"\nimport { LogMessageByKey, ModuleManager } from \"./moduleManager.js\"\nimport { getPackageManagerCommand, PM } from \"./packageManager.js\"\nimport { streamSpawnToFile } from \"../util/streamSpawnToFile.js\"\nimport type { Dependency, DependencyGraph, NodeModuleInfo, PackageJson } from \"./types.js\"\nimport { isPackageCompatible } from \"../util/archCompatibility.js\"\n\n/** Target arch/platform used to drop `cpu`/`os`-incompatible packages while collecting. */\nexport interface ArchFilter {\n  cpu: string | null\n  os: string\n}\n\nexport abstract class NodeModulesCollector<ProdDepType extends Dependency<ProdDepType, OptionalDepType>, OptionalDepType> {\n  private readonly nodeModules: NodeModuleInfo[] = []\n  protected readonly allDependencies: Map<string, ProdDepType> = new Map()\n  protected readonly productionGraph: DependencyGraph = {}\n  protected readonly cache: ModuleManager = new ModuleManager()\n\n  /** Whether `node_modules` uses a hoisted (flat) layout. Overridden by collectors that detect it from disk or config. */\n  protected isHoisted = new Lazy<boolean>(() => Promise.resolve(false))\n\n  constructor(\n    protected readonly rootDir: string,\n    private readonly tempDirManager: TmpDir\n  ) {}\n\n  /**\n   * Retrieves and collects all Node.js modules for a given package.\n   *\n   * This method orchestrates the entire module collection process by:\n   * 1. Fetching the dependency tree from the package manager\n   * 2. Collecting all dependencies recursively\n   * 3. Extracting workspace references if applicable\n   * 4. Building a production dependency graph\n   * 5. Hoisting the dependencies to their final locations\n   * 6. Resolving and returning module information\n   */\n  public async getNodeModules({\n    packageName,\n    archFilter,\n    ignoredDependencies,\n  }: {\n    packageName: string\n    archFilter?: ArchFilter\n    ignoredDependencies?: ReadonlyArray<string>\n  }): Promise<{\n    nodeModules: NodeModuleInfo[]\n    logSummary: ModuleManager[\"logSummary\"]\n  }> {\n    const tree: ProdDepType = await this.getDependenciesTree(this.installOptions.manager)\n\n    await this.collectAllDependencies(tree, packageName)\n    const realTree: ProdDepType = this.getTreeFromWorkspaces(tree, packageName)\n    await this.extractProductionDependencyGraph(realTree, packageName)\n\n    this.markExcludedModules(this.productionGraph, packageName, ignoredDependencies ?? [])\n\n    const hoisterResult: HoisterResult = hoist(this.transformToHoisterTree(this.productionGraph, packageName), {\n      check: log.isDebugEnabled,\n    })\n\n    await this._getNodeModules(hoisterResult.dependencies, this.nodeModules, archFilter)\n\n    log.debug({ packageName, depCount: this.nodeModules.length }, \"node modules collection complete\")\n\n    return { nodeModules: this.nodeModules, logSummary: this.cache.logSummary }\n  }\n\n  public abstract readonly installOptions: {\n    manager: PM\n    lockfile: string\n  }\n\n  protected abstract getArgs(): string[]\n  protected abstract extractProductionDependencyGraph(tree: Dependency<ProdDepType, OptionalDepType>, dependencyId: string): Promise<void>\n  protected abstract collectAllDependencies(tree: Dependency<ProdDepType, OptionalDepType>, appPackageName: string): Promise<void>\n\n  /**\n   * Retrieves the dependency tree from the package manager.\n   *\n   * Executes the appropriate package manager command to fetch the dependency tree and writes\n   * the output to a temporary file. Includes retry logic to handle transient failures such as\n   * incomplete JSON output or missing files. Will retry up to 1 time with exponential backoff.\n   */\n  protected async getDependenciesTree(pm: PM): Promise<ProdDepType> {\n    const command = getPackageManagerCommand(pm)\n    const args = this.getArgs()\n\n    const tempOutputFile = await this.tempDirManager.getTempFile({\n      prefix: path.basename(command, path.extname(command)),\n      suffix: \"output.json\",\n    })\n\n    return retry(\n      async () => {\n        const { code, stderr } = await this.streamCollectorCommandToFile(command, args, this.rootDir, tempOutputFile)\n        const shellOutput = await _fsExtra.readFile(tempOutputFile, { encoding: \"utf8\" })\n        if (shellOutput.trim().length === 0) {\n          // Parsing an empty string would only yield a misleading \"No JSON content found in output\" (#10208).\n          // With npm this usually means npm itself threw while writing its buffered JSON tree at exit: npm's exit\n          // handler swallows that exception and exits 1 with nothing on stdout and only `verbose exit 1` in its log.\n          throw new Error(\n            `\\`${[path.basename(command), ...args].join(\" \")}\\` (cwd: ${this.rootDir}) exited with code ${code} and produced no output on stdout; ` +\n              `with npm this usually means npm itself failed while writing its JSON dependency tree. stderr: ${stderr.trim().length > 0 ? stderr.trim() : \"(empty)\"}`\n          )\n        }\n        const result = await Promise.resolve(this.parseDependenciesTree(shellOutput))\n        return result\n      },\n      {\n        retries: 1,\n        interval: 2000,\n        backoff: 2000,\n        shouldRetry: async (error: any) => {\n          const fields: Record<string, string> = { error: error.message, tempOutputFile, cwd: this.rootDir, packageManager: pm }\n\n          if (!(await exists(tempOutputFile))) {\n            log.debug(fields, \"dependency tree output file missing, retrying\")\n            return true\n          }\n\n          const fileContent = await _fsExtra.readFile(tempOutputFile, { encoding: \"utf8\" })\n          fields.fileContentLength = fileContent.length.toString()\n\n          if (fileContent.trim().length === 0) {\n            log.debug(fields, \"dependency tree output file empty, retrying\")\n            return true\n          }\n\n          // extract small start/end sample for debugging purposes (e.g. polluted console output)\n          const lines = fileContent.split(\"\\n\")\n          const lineSampleSize = Math.min(5, lines.length / 2)\n          if (2 * lineSampleSize > 5) {\n            fields.sampleStart = lines.slice(0, lineSampleSize).join(\"\\n\")\n            fields.sampleEnd = lines.slice(-lineSampleSize).join(\"\\n\")\n          } else {\n            fields.content = fileContent\n          }\n\n          // Both indicate truncated/polluted PM output (a transient that re-running the command clears).\n          if (error.message?.includes(\"Unexpected end of JSON input\") || error.message?.includes(\"No JSON content found in output\")) {\n            log.debug(fields, \"JSON parse error in dependency tree, retrying\")\n            return true\n          }\n\n          log.error(fields, \"error parsing dependencies tree\")\n          return false\n        },\n      }\n    )\n  }\n\n  /**\n   * Parses the dependencies tree from shell command output.\n   *\n   **/\n  protected parseDependenciesTree(shellOutput: string): ProdDepType | Promise<ProdDepType> {\n    return this.extractJsonFromPollutedOutput<ProdDepType>(shellOutput)\n  }\n\n  protected extractJsonFromPollutedOutput<T>(shellOutput: string): T {\n    const consoleOutput = shellOutput.trim()\n    try {\n      // Please for the love of all that is holy, this should cover 99% of cases where npm/pnpm/yarn output is clean JSON\n      return JSON.parse(consoleOutput)\n    } catch {\n      // ignore\n    }\n\n    // DEDICATED FALLBACK FOR POLLUTED OUTPUT, non-trivial to implement correctly, not needed in most cases, and highly inefficient\n\n    // Find the first index that starts with { or [\n    const bracketOpen = Math.max(consoleOutput.indexOf(\"{\"), 0)\n    const bracketOpenSquare = Math.max(consoleOutput.indexOf(\"[\"), 0)\n    const start = Math.min(bracketOpen, bracketOpenSquare) // always non-negative due to Math.max above\n\n    for (let i = start; i < consoleOutput.length; i++) {\n      const slice = consoleOutput.slice(start, i + 1)\n      try {\n        return JSON.parse(slice)\n      } catch {\n        // ignore, try next\n      }\n    }\n    throw new Error(\"No JSON content found in output\")\n  }\n\n  protected cacheKey(pkg: Pick<ProdDepType, \"name\" | \"version\" | \"path\">): string {\n    const rel = path.relative(this.rootDir, pkg.path)\n    return `${pkg.name}::${pkg.version}::${rel ?? \".\"}`\n  }\n\n  // We use the key (alias name) instead of value.name for npm aliased packages\n  // e.g., { \"foo\": { name: \"@scope/bar\", ... } } should be stored as \"foo@version\"\n  protected normalizePackageVersion(key: string, pkg: ProdDepType) {\n    return { id: `${key}@${pkg.version}`, pkgOverride: { ...pkg, name: key } }\n  }\n\n  /**\n   * Determines if a given dependency is a production dependency of a package.\n   *\n   * Checks both the dependencies and optionalDependencies of a package to see if\n   * the specified dependency name is listed.\n   *\n   * @param depName - The name of the dependency to check\n   * @param pkg - The package to search for the dependency in\n   * @returns True if the dependency is found in either dependencies or optionalDependencies, false otherwise\n   */\n  protected isProdDependency(depName: string, pkg: ProdDepType): boolean {\n    const prodDeps = { ...pkg.dependencies, ...pkg.optionalDependencies }\n    return prodDeps[depName] != null\n  }\n\n  protected async locatePackageWithVersion(depTree: Pick<ProdDepType, \"name\" | \"version\" | \"path\">): Promise<{ packageDir: string; packageJson: PackageJson } | null> {\n    const result = await this.cache.locatePackageVersion({\n      parentDir: depTree.path,\n      pkgName: depTree.name,\n      requiredRange: depTree.version,\n    })\n    return result\n  }\n  /**\n   * Parses a dependency identifier string into name and version components.\n   *\n   * Handles both scoped packages (e.g., \"@scope/pkg@1.2.3\") and regular packages (e.g., \"pkg@1.2.3\").\n   * If the identifier is malformed or cannot be parsed, defaults to treating the entire string as\n   * the package name with an \"unknown\" version.\n   */\n  protected parseNameVersion(identifier: string): { name: string; version: string } {\n    let at: number\n    if (identifier.startsWith(\"@\")) {\n      // Scoped package: find the version separator after the scope (e.g. \"@scope/pkg@1.2.3\")\n      const slashIndex = identifier.indexOf(\"/\")\n      if (slashIndex === -1) {\n        return { name: identifier, version: \"unknown\" }\n      }\n      at = identifier.indexOf(\"@\", slashIndex + 1)\n    } else {\n      at = identifier.indexOf(\"@\")\n    }\n    if (at <= 0) {\n      return { name: identifier, version: \"unknown\" }\n    }\n    return { name: identifier.slice(0, at), version: identifier.slice(at + 1) }\n  }\n\n  /**\n   * Retrieves the dependency tree and handles workspace package self-references.\n   *\n   * If the project is a workspace project, this method removes the root package's self-reference\n   * from the dependency tree to avoid circular dependencies. It promotes the root package's\n   * direct dependencies to the top level of the tree.\n   *\n   * @param tree - The original dependency tree\n   * @param packageName - The name of the package to check for and remove from the tree\n   * @returns The extracted dependency subtree\n   */\n  protected getTreeFromWorkspaces(tree: ProdDepType, packageName: string): ProdDepType {\n    if (tree.workspaces && tree.dependencies) {\n      for (const [key, value] of Object.entries(tree.dependencies)) {\n        if (key === packageName) {\n          return value\n        }\n      }\n    }\n\n    return tree\n  }\n\n  /**\n   * Flags which modules must be omitted from the *copied* app output for the given `ignoredNames` by\n   * setting an `excluded` marker on the pre-hoist graph nodes.\n   *\n   * Only a *top-level* production dependency (one the app itself declares) can be excluded, together\n   * with its exclusively-owned transitive subtree. A package that is merely a transitive dependency of\n   * a non-excluded production dependency is never excluded, even if its name is in `ignoredNames`:\n   * only the root's own edges to ignored names are severed, so anything still reachable through another\n   * production dependency stays reachable and is kept.\n   *\n   * Runs on the pre-hoist graph, where the true parent->child edges still exist, so a shared (deduped)\n   * transitive dependency remains reachable and is kept while an ignored package's exclusive subtree\n   * becomes unreachable and is flagged.\n   */\n  private markExcludedModules(graph: DependencyGraph, rootId: string, ignoredNames: ReadonlyArray<string>): void {\n    const ignored = new Set(ignoredNames)\n    if (ignored.size === 0) {\n      return\n    }\n\n    const rootDeps = graph[rootId]?.dependencies ?? []\n    const ignoredRootEdges = new Set(rootDeps.filter(dep => ignored.has(this.parseNameVersion(dep).name)))\n    if (ignoredRootEdges.size === 0) {\n      return\n    }\n\n    const reachable = new Set<string>()\n    const stack: string[] = [rootId]\n    while (stack.length > 0) {\n      const id = stack.pop()!\n      if (reachable.has(id)) {\n        continue\n      }\n      reachable.add(id)\n      const node = graph[id]\n      if (node != null) {\n        for (const dep of node.dependencies) {\n          if (id === rootId && ignoredRootEdges?.has(dep)) {\n            continue\n          }\n          if (!reachable.has(dep)) {\n            stack.push(dep)\n          }\n        }\n      }\n    }\n    for (const id of Object.keys(graph)) {\n      if (!reachable.has(id)) {\n        graph[id].excluded = true\n      }\n    }\n\n    // Only directly-declared deps that actually ended up excluded (i.e. not still reachable via a kept\n    // dependency) are surfaced to the user; their exclusive transitive subtree is omitted from the log.\n    // Report the full `name@version` graph id — like the other logSummary buckets — so the log stays\n    // truthful when another version of the same name still ships via a kept dependency (e.g. `debug@4`\n    // excluded while `debug@3` remains bundled).\n    const topLevelExcluded = new Set<string>()\n    for (const dep of ignoredRootEdges) {\n      if (!reachable.has(dep)) {\n        topLevelExcluded.add(dep)\n      }\n    }\n    if (topLevelExcluded.size > 0) {\n      this.cache.logSummary[LogMessageByKey.PKG_EXCLUDED_IGNORED].push(...Array.from(topLevelExcluded).sort())\n    }\n  }\n\n  private transformToHoisterTree(obj: DependencyGraph, key: string, nodes: Map<string, HoisterTree> = new Map()): HoisterTree {\n    let node = nodes.get(key)\n    const { name, version } = this.parseNameVersion(key)\n\n    if (!node) {\n      node = {\n        name,\n        identName: name,\n        reference: version,\n        dependencies: new Set<HoisterTree>(),\n        peerNames: new Set<string>(),\n      }\n\n      nodes.set(key, node)\n\n      const deps = (obj[key] || {}).dependencies || []\n      for (const dep of deps) {\n        const child = this.transformToHoisterTree(obj, dep, nodes)\n        // a package that declares itself as a dependency (e.g. libsql) must not produce a self-edge\n        if (child !== node) {\n          node.dependencies.add(child)\n        }\n      }\n    }\n\n    return node\n  }\n\n  private async _getNodeModules(dependencies: Set<HoisterResult>, result: NodeModuleInfo[], archFilter?: ArchFilter, ancestors: Set<HoisterResult> = new Set()) {\n    if (dependencies.size === 0) {\n      return\n    }\n\n    for (const d of dependencies.values()) {\n      // dependency cycles (including self-references) must not recurse\n      if (ancestors.has(d)) {\n        continue\n      }\n      const reference = [...d.references][0]\n      const key = `${d.name}@${reference}`\n      // Normalize the path to handle mixed separators from pnpm JSON output on Windows\n      const rawPath = this.allDependencies.get(key)?.path\n      const p = rawPath != null ? path.normalize(rawPath) : undefined\n      if (p === undefined) {\n        this.cache.logSummary[LogMessageByKey.PKG_NOT_FOUND].push(key)\n        continue\n      }\n\n      // fix npm list issue\n      // https://github.com/npm/cli/issues/8535\n      if (!(await this.cache.exists[p])) {\n        this.logMissingDependency(key)\n        continue\n      }\n\n      const dir = await this.cache.realPath[p]\n\n      // Drop packages whose declared `cpu`/`os` is incompatible with the target arch/platform (and their\n      // subtree). npm/pnpm install only the host's platform-specific optional packages, so without this an\n      // arm64-only binary (e.g. `@esbuild/darwin-arm64`) would be bundled into the x64 build too — and into\n      // both slices of a universal build, which `@electron/universal` then refuses to merge. Reuses the\n      // memoized `package.json` cache populated during collection.\n      if (archFilter != null) {\n        const pkgJson = await this.cache.json[path.join(dir, \"package.json\")]\n        if (pkgJson != null && !isPackageCompatible(pkgJson, archFilter.cpu, archFilter.os)) {\n          this.cache.logSummary[LogMessageByKey.PKG_INCOMPATIBLE_PLATFORM].push(key)\n          continue\n        }\n      }\n\n      const node: NodeModuleInfo = {\n        name: d.name,\n        version: reference,\n        dir,\n        excluded: this.productionGraph[key]?.excluded,\n      }\n      result.push(node)\n      if (d.dependencies.size > 0) {\n        node.dependencies = []\n        ancestors.add(d)\n        await this._getNodeModules(d.dependencies, node.dependencies, archFilter, ancestors)\n        ancestors.delete(d)\n      }\n    }\n    result.sort((a, b) => a.name.localeCompare(b.name))\n  }\n\n  /**\n   * Records a dependency that could not be resolved on disk in the log summary.\n   *\n   * A platform-specific package name (e.g. `sass-embedded-linux-x64`) is always classified as a\n   * platform-specific optional dependency. Otherwise, `isDeclaredOptional` decides the bucket: a\n   * caller that *knows* the dependency was declared in `optionalDependencies` (e.g. the pnpm\n   * collector's optional-dependency check) reports a missing *optional* dependency — an expected\n   * condition — rather than the `PKG_NOT_ON_DISK` warning reserved for genuinely missing\n   * production dependencies.\n   */\n  protected logMissingDependency(pkgName: string, isDeclaredOptional = false) {\n    const PLATFORM_PACKAGE_RE = /(linux|win32|darwin|freebsd|android)[-_](x64|arm64|ia32|arm|ppc64|s390x|loong64|riscv64|universal)/\n    const diskLogKey = PLATFORM_PACKAGE_RE.test(pkgName)\n      ? LogMessageByKey.PKG_OPTIONAL_PLATFORM_NOT_INSTALLED\n      : isDeclaredOptional\n        ? LogMessageByKey.PKG_OPTIONAL_NOT_INSTALLED\n        : LogMessageByKey.PKG_NOT_ON_DISK\n    this.cache.logSummary[diskLogKey].push(pkgName)\n  }\n\n  protected async asyncExec(command: string, args: string[], cwd: string = this.rootDir): Promise<{ stdout: string | undefined; stderr: string | undefined }> {\n    const file = await this.tempDirManager.getTempFile({ prefix: \"exec-\", suffix: \".txt\" })\n    try {\n      await this.streamCollectorCommandToFile(command, args, cwd, file)\n      const result = await _fsExtra.readFile(file, { encoding: \"utf8\" })\n      return { stdout: result?.trim(), stderr: undefined }\n    } catch (error: any) {\n      log.debug({ error: error.message }, \"failed to execute command\")\n      return { stdout: undefined, stderr: error.message }\n    }\n  }\n\n  /**\n   * Executes a package-manager command and streams its stdout to a file.\n   *\n   * Delegates the spawn/stream/flush mechanics (including the Windows `powershell.exe -EncodedCommand`\n   * wrapping) to {@link streamSpawnToFile}, and layers on the collector-specific interpretation of the\n   * result: corepack is silenced for these invocations, `npm list` exit code 1 is tolerated, and any\n   * stderr is surfaced as a collector warning only when the exit code is genuinely unexpected.\n   *\n   * @param command - The command to execute\n   * @param args - Array of command-line arguments\n   * @param cwd - The working directory to execute the command in\n   * @param tempOutputFile - The path to the temporary file where stdout will be written\n   * @returns Promise that resolves with the exit code and captured stderr when the command completes\n   * successfully (or with a tolerated exit code), or rejects if it fails\n   * @throws {Error} If the child process spawn fails or exits with a non-zero, unexpected code\n   */\n  protected async streamCollectorCommandToFile(command: string, args: string[], cwd: string, tempOutputFile: string): Promise<{ code: number; stderr: string }> {\n    // Derive execName from the original command so the npm-list shouldIgnore check below keys off the\n    // real invocation (e.g. \"npm\"), not the \"powershell\" wrapper streamSpawnToFile uses on Windows.\n    const execName = path.basename(command, path.extname(command))\n\n    const { code, stderr } = await streamSpawnToFile(command, args, cwd, tempOutputFile, {\n      // Package manager invocations do not need signing/publishing credentials. Silence corepack:\n      // strict=0 so a project's `packageManager` pin can't abort our read-only queries, and the\n      // download prompt/notice off so corepack doesn't flood stdout/stderr with activation chatter.\n      ...stripSensitiveEnvVars(process.env),\n      COREPACK_ENABLE_STRICT: \"0\",\n      COREPACK_ENABLE_DOWNLOAD_PROMPT: \"0\",\n    })\n\n    // https://github.com/npm/npm/issues/17624\n    const shouldIgnore = code === 1 && \"npm\" === execName.toLowerCase() && args.includes(\"list\")\n    if (shouldIgnore) {\n      log.debug(null, \"`npm list` returned non-zero exit code, but it MIGHT be expected (https://github.com/npm/npm/issues/17624). Check stderr for details.\")\n    }\n    if (stderr.length > 0) {\n      log.debug({ stderr }, \"note: there was node module collector output on stderr\")\n      // Only surface stderr as a user-visible warning when the exit code itself is unexpected.\n      // When shouldIgnore is true (npm list exit code 1) the stderr is an anticipated side\n      // effect of package-manager features like yarn resolutions or npm overrides that cause\n      // npm to report ELSPROBLEMS for aliased packages it considers \"invalid\".\n      if (!shouldIgnore) {\n        this.cache.logSummary[LogMessageByKey.PKG_COLLECTOR_OUTPUT].push(stderr)\n      }\n    }\n    if (code !== 0 && !shouldIgnore) {\n      throw new Error(`Node module collector process exited with code ${code}:\\n${stderr}`)\n    }\n    return { code, stderr }\n  }\n}\n"]}

package/dist/node-module-collector/pnpmNodeModulesCollector.d.ts

@@ -11,10 +11,10 @@ export declare class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmD
     private _pnpmMajorVersion;
     private readonly pnpmVersion;
     /**
-     * Detect pnpm's installed layout from the on-disk structure rather than `pnpm config list`.
-     * pnpm 11 no longer echoes `node-linker` (from `.npmrc`) in `config list`, so the base-class
-     * config-parsing detection silently reports "not hoisted" for a hoisted install, which would
-     * disable the downward search needed to find version-conflicted nested deps.
+     * Detect pnpm's installed layout from the on-disk structure rather than from config.
+     * pnpm 11 ignores `node-linker` in `.npmrc` (it moved to `nodeLinker` in `pnpm-workspace.yaml`),
+     * so config parsing can report "not hoisted" for a hoisted install, which would disable the
+     * downward search needed to find version-conflicted nested deps.
      *
      * In the default isolated store every regular top-level package resolves — through a symlink
      * on POSIX, a junction on Windows — into `node_modules/.pnpm/<name>@<ver>/node_modules/<name>`.
@@ -25,6 +25,15 @@ export declare class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmD
      * otherwise mask an isolated store.
      */
     protected isHoisted: Lazy<boolean>;
+    /**
+     * The pnpm workspace root containing `rootDir` (nearest ancestor with `pnpm-workspace.yaml`, as pnpm
+     * itself resolves it), or null outside a workspace or when `rootDir` is the workspace root.
+     */
+    private readonly workspaceRoot;
+    /** `rootDir`, then the workspace root when `rootDir` is a workspace package. */
+    private readonly layoutRoots;
+    /** Returns true if `nmDir` is an isolated (`.pnpm`) store, false if hoisted, null if it holds no packages. */
+    private scanNodeModulesLayout;
     /**
      * Memo for `locateFromDepOrRoot`, keyed by `name@version`. pnpm's content-addressed virtual
      * store guarantees that any given `name@version` resolves to a single location on disk, so
@@ -56,7 +65,38 @@ export declare class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmD
      * versions of a dep exist in the workspace.
      */
     private locateFromDepOrRoot;
+    /**
+     * Resolve a located package to its real directory (the symlink target), leaving a non-symlinked
+     * hit untouched.
+     *
+     * `locatePackageVersion` returns the path it *walked*, which in pnpm's isolated store is the
+     * `node_modules/<name>` symlink rather than `.pnpm/<name>@<ver>/node_modules/<name>`. That
+     * distinction matters because the store keeps a package's dependencies as SIBLINGS inside
+     * `.pnpm/<name>@<ver>/node_modules/`, reachable only from the real path: searching upward from
+     * the symlink walks the *linking* project instead of the store and finds nothing. That is how
+     * `fs-extra`'s `universalify`/`jsonfile` (and `js-yaml`'s `argparse`) were silently dropped from
+     * the asar of an app whose `electron-updater` came from a `link:`ed checkout — pnpm reports such
+     * packages with no dependency tree, so `visitDep` resolves their deps from disk through here.
+     *
+     * Resolving the link is what Node itself does (`--preserve-symlinks` is off by default), which is
+     * why the same require works before packaging. `ModuleManager.locatePackageVersionFromCacheKey`
+     * and `TraversalNodeModulesCollector` already normalize this way.
+     */
+    private toRealPackage;
     protected extractProductionDependencyGraph(tree: PnpmDependency, dependencyId: string): Promise<void>;
+    /**
+     * Resolve a dependency that `pnpm list` left out of a package's tree to its `allDependencies` entry.
+     * The lookup goes through the copy node itself would load from `parentPath` (the package's real store
+     * directory), filtered by the declared range, and falls back to a name-only match only when nothing on
+     * disk resolves to a collected entry (a `link:` dep, whose entry is keyed by its `link:` version).
+     *
+     * A name-only lookup returns whichever version was collected first, which is wrong as soon as two
+     * versions of the package are installed: with the app pinning es5-ext@0.10.53 while its transitive
+     * d@1.0.2 needs es5-ext ^0.10.64, `d` was wired to 0.10.53 and the nested 0.10.64 copy (with its own
+     * esniff / event-emitter / next-tick@1.1.0 closure) vanished from the asar (#8493). pnpm 10.29.3+
+     * made this common, because its deduped output routes every repeated package through this recovery.
+     */
+    private resolveOmittedDependency;
     protected collectAllDependencies(_tree: PnpmDependency, _appPackageName: string): Promise<void>;
     /**
      * Resolve a `link:` dependency to its real on-disk source directory — never the `node_modules`

package/dist/node-module-collector/pnpmNodeModulesCollector.d.ts.map

@@ -1 +1 @@
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package/dist/node-module-collector/pnpmNodeModulesCollector.js

@@ -4,7 +4,7 @@ import * as path from "path";
 import { LogMessageByKey, readJsonOrNull } from "./moduleManager.js";
 import { NodeModulesCollector } from "./nodeModulesCollector.js";
 import { getPackageManagerCommand, PM } from "./packageManager.js";
-import { isValidKey } from "builder-util";
+import { exists, isValidKey } from "builder-util";
 export class PnpmNodeModulesCollector extends NodeModulesCollector {
     constructor() {
         super(...arguments);
@@ -23,10 +23,10 @@ export class PnpmNodeModulesCollector extends NodeModulesCollector {
             return isNaN(major) ? 0 : major;
         });
         /**
-         * Detect pnpm's installed layout from the on-disk structure rather than `pnpm config list`.
-         * pnpm 11 no longer echoes `node-linker` (from `.npmrc`) in `config list`, so the base-class
-         * config-parsing detection silently reports "not hoisted" for a hoisted install, which would
-         * disable the downward search needed to find version-conflicted nested deps.
+         * Detect pnpm's installed layout from the on-disk structure rather than from config.
+         * pnpm 11 ignores `node-linker` in `.npmrc` (it moved to `nodeLinker` in `pnpm-workspace.yaml`),
+         * so config parsing can report "not hoisted" for a hoisted install, which would disable the
+         * downward search needed to find version-conflicted nested deps.
          *
          * In the default isolated store every regular top-level package resolves — through a symlink
          * on POSIX, a junction on Windows — into `node_modules/.pnpm/<name>@<ver>/node_modules/<name>`.
@@ -37,30 +37,43 @@ export class PnpmNodeModulesCollector extends NodeModulesCollector {
          * otherwise mask an isolated store.
          */
         this.isHoisted = new Lazy(async () => {
-            const nmDir = path.join(this.rootDir, "node_modules");
-            const entries = await _fsExtra.readdir(nmDir).catch(() => []);
+            // A workspace package's own `node_modules` is often absent (or holds only its version
+            // conflicts) in a hoisted workspace, so fall back to the workspace root's `node_modules`.
             let sawPackage = false;
-            for (const name of entries) {
-                if (name.startsWith(".")) {
-                    continue; // .pnpm, .bin, .modules.yaml
-                }
-                const entryPath = path.join(nmDir, name);
-                // A scoped dir (@scope) is not a package itself; descend to its packages.
-                const candidates = name.startsWith("@") ? (await _fsExtra.readdir(entryPath).catch(() => [])).map(s => path.join(entryPath, s)) : [entryPath];
-                for (const candidate of candidates) {
-                    const real = await _fsExtra.realpath(candidate).catch(() => null);
-                    if (real == null) {
-                        continue;
+            for (const dir of await this.layoutRoots.value) {
+                const isolated = await this.scanNodeModulesLayout(path.join(dir, "node_modules"));
+                if (isolated != null) {
+                    if (isolated) {
+                        return false;
                     }
                     sawPackage = true;
-                    if (real.split(path.sep).includes(".pnpm")) {
-                        return false; // isolated store: a package routes through the virtual store
-                    }
                 }
             }
             // Packages exist and none route through `.pnpm` → hoisted. No packages → flat default.
             return sawPackage;
         });
+        /**
+         * The pnpm workspace root containing `rootDir` (nearest ancestor with `pnpm-workspace.yaml`, as pnpm
+         * itself resolves it), or null outside a workspace or when `rootDir` is the workspace root.
+         */
+        this.workspaceRoot = new Lazy(async () => {
+            let current = path.resolve(this.rootDir);
+            while (true) {
+                if (await exists(path.join(current, "pnpm-workspace.yaml"))) {
+                    return current === path.resolve(this.rootDir) ? null : current;
+                }
+                const parent = path.dirname(current);
+                if (parent === current) {
+                    return null;
+                }
+                current = parent;
+            }
+        });
+        /** `rootDir`, then the workspace root when `rootDir` is a workspace package. */
+        this.layoutRoots = new Lazy(async () => {
+            const workspaceRoot = await this.workspaceRoot.value;
+            return workspaceRoot == null ? [this.rootDir] : [this.rootDir, workspaceRoot];
+        });
         /**
          * Memo for `locateFromDepOrRoot`, keyed by `name@version`. pnpm's content-addressed virtual
          * store guarantees that any given `name@version` resolves to a single location on disk, so
@@ -78,6 +91,30 @@ export class PnpmNodeModulesCollector extends NodeModulesCollector {
          *  first access inside `extractProductionDependencyGraph`, after `allDependencies` is settled. */
         this._allDepsByName = null;
     }
+    /** Returns true if `nmDir` is an isolated (`.pnpm`) store, false if hoisted, null if it holds no packages. */
+    async scanNodeModulesLayout(nmDir) {
+        const entries = await _fsExtra.readdir(nmDir).catch(() => []);
+        let sawPackage = false;
+        for (const name of entries) {
+            if (name.startsWith(".")) {
+                continue; // .pnpm, .bin, .modules.yaml
+            }
+            const entryPath = path.join(nmDir, name);
+            // A scoped dir (@scope) is not a package itself; descend to its packages.
+            const candidates = name.startsWith("@") ? (await _fsExtra.readdir(entryPath).catch(() => [])).map(s => path.join(entryPath, s)) : [entryPath];
+            for (const candidate of candidates) {
+                const real = await _fsExtra.realpath(candidate).catch(() => null);
+                if (real == null) {
+                    continue;
+                }
+                sawPackage = true;
+                if (real.split(path.sep).includes(".pnpm")) {
+                    return true; // isolated store: a package routes through the virtual store
+                }
+            }
+        }
+        return sawPackage ? false : null;
+    }
     /**
      * Returns the workspace packages to iterate over, gated by detected pnpm version:
      * - pnpm v11+: multi-entry workspace output → return the full parsed array
@@ -140,8 +177,15 @@ export class PnpmNodeModulesCollector extends NodeModulesCollector {
             // `.pnpm` virtual store it stays true (forcing it on there would burn thousands of
             // readdir/lstat calls — and on Windows, where pnpm uses junctions that `lstat` reports as
             // directories, the BFS walks the entire store and resolves the wrong paths).
-            const satisfying = (parentPath ? await this.cache.locatePackageVersion({ pkgName, parentDir: parentPath, requiredRange, skipDownwardSearch, skipOverrideFallback: true }) : null) ??
-                (await this.cache.locatePackageVersion({ pkgName, parentDir: this.rootDir, requiredRange, skipDownwardSearch, skipOverrideFallback: true }));
+            //
+            // When `rootDir` is a workspace package, a hoisted install keeps the tree — including the
+            // nested `<workspaceRoot>/node_modules/A/node_modules/B` copies — under the workspace root,
+            // which the downward BFS from `rootDir` never reaches (its `node_modules` is often absent),
+            // so search the workspace root last.
+            let satisfying = parentPath ? await this.cache.locatePackageVersion({ pkgName, parentDir: parentPath, requiredRange, skipDownwardSearch, skipOverrideFallback: true }) : null;
+            for (const dir of await this.layoutRoots.value) {
+                satisfying ??= await this.cache.locatePackageVersion({ pkgName, parentDir: dir, requiredRange, skipDownwardSearch, skipOverrideFallback: true });
+            }
             if (satisfying) {
                 return satisfying;
             }
@@ -152,12 +196,36 @@ export class PnpmNodeModulesCollector extends NodeModulesCollector {
                 return fromDep;
             }
             return this.cache.locatePackageVersion({ pkgName, parentDir: this.rootDir, requiredRange, skipDownwardSearch });
-        })();
+        })().then(pkg => this.toRealPackage(pkg));
         if (memoKey != null) {
             this.locateMemo.set(memoKey, promise);
         }
         return promise;
     }
+    /**
+     * Resolve a located package to its real directory (the symlink target), leaving a non-symlinked
+     * hit untouched.
+     *
+     * `locatePackageVersion` returns the path it *walked*, which in pnpm's isolated store is the
+     * `node_modules/<name>` symlink rather than `.pnpm/<name>@<ver>/node_modules/<name>`. That
+     * distinction matters because the store keeps a package's dependencies as SIBLINGS inside
+     * `.pnpm/<name>@<ver>/node_modules/`, reachable only from the real path: searching upward from
+     * the symlink walks the *linking* project instead of the store and finds nothing. That is how
+     * `fs-extra`'s `universalify`/`jsonfile` (and `js-yaml`'s `argparse`) were silently dropped from
+     * the asar of an app whose `electron-updater` came from a `link:`ed checkout — pnpm reports such
+     * packages with no dependency tree, so `visitDep` resolves their deps from disk through here.
+     *
+     * Resolving the link is what Node itself does (`--preserve-symlinks` is off by default), which is
+     * why the same require works before packaging. `ModuleManager.locatePackageVersionFromCacheKey`
+     * and `TraversalNodeModulesCollector` already normalize this way.
+     */
+    async toRealPackage(pkg) {
+        if (pkg == null) {
+            return null;
+        }
+        const packageDir = await this.cache.realPath[pkg.packageDir];
+        return packageDir === pkg.packageDir ? pkg : { ...pkg, packageDir };
+    }
     // pnpm 10+ does not automatically preserve transitive optional platform-specific
     // packages (e.g. sass-embedded-linux-x64) across lock file regeneration. Users
     // must list them as direct optionalDependencies. Missing ones are emitted as
@@ -188,13 +256,14 @@ export class PnpmNodeModulesCollector extends NodeModulesCollector {
         const all = packageJson ? { ...packageJson.dependencies, ...packageJson.optionalDependencies } : { ...tree.dependencies, ...tree.optionalDependencies };
         const optional = packageJson ? { ...packageJson.optionalDependencies } : {};
         const deps = { ...(tree.dependencies || {}), ...(tree.optionalDependencies || {}) };
-        // pnpm --prod omits sub-deps for link: packages (and synthetic entries derived from them).
-        // For any dep declared in the package.json (all) that pnpm left out of the tree, recover
-        // the resolved entry from allDependencies so it lands in the production graph.
-        const byName = this.getAllDepsByName();
-        for (const depName of Object.keys(all)) {
+        // pnpm --prod omits sub-deps for link: packages (and synthetic entries derived from them), and pnpm
+        // 10.29.3+ prints a repeated subtree only once, so every later occurrence is a childless `deduped`
+        // stub (which is what `tree` is when the stub was the first occurrence collected). For any dep
+        // declared in the package.json (all) that pnpm left out of the tree, recover the resolved entry
+        // from allDependencies so it lands in the production graph.
+        for (const [depName, declaredRange] of Object.entries(all)) {
             if (!deps[depName]) {
-                const dep = byName.get(depName);
+                const dep = await this.resolveOmittedDependency(depName, declaredRange, tree.path);
                 if (dep && isValidKey(depName)) {
                     deps[depName] = dep;
                 }
@@ -229,6 +298,24 @@ export class PnpmNodeModulesCollector extends NodeModulesCollector {
         }
         this.productionGraph[dependencyId] = { dependencies: collectedDependencies };
     }
+    /**
+     * Resolve a dependency that `pnpm list` left out of a package's tree to its `allDependencies` entry.
+     * The lookup goes through the copy node itself would load from `parentPath` (the package's real store
+     * directory), filtered by the declared range, and falls back to a name-only match only when nothing on
+     * disk resolves to a collected entry (a `link:` dep, whose entry is keyed by its `link:` version).
+     *
+     * A name-only lookup returns whichever version was collected first, which is wrong as soon as two
+     * versions of the package are installed: with the app pinning es5-ext@0.10.53 while its transitive
+     * d@1.0.2 needs es5-ext ^0.10.64, `d` was wired to 0.10.53 and the nested 0.10.64 copy (with its own
+     * esniff / event-emitter / next-tick@1.1.0 closure) vanished from the asar (#8493). pnpm 10.29.3+
+     * made this common, because its deduped output routes every repeated package through this recovery.
+     */
+    async resolveOmittedDependency(depName, declaredRange, parentPath) {
+        const range = typeof declaredRange === "string" ? declaredRange : undefined;
+        const located = await this.locateFromDepOrRoot(depName, parentPath, range);
+        const exact = located ? this.allDependencies.get(`${depName}@${located.packageJson.version}`) : undefined;
+        return exact ?? this.getAllDepsByName().get(depName);
+    }
     async collectAllDependencies(_tree, _appPackageName) {
         for (const root of this.allWorkspacePackages) {
             await this.collectDepsRecursively(root);
@@ -292,19 +379,28 @@ export class PnpmNodeModulesCollector extends NodeModulesCollector {
         const resolvedPath = linkTarget ?? located?.packageDir ?? value.path;
         this.allDependencies.set(id, { ...value, path: resolvedPath });
         // For transitive-dep discovery of entries pnpm did not expand (link: packages), use the
-        // located package.json; fall back to the link target's own package.json when the junction
-        // could not be resolved (again, the cross-drive case).
-        const pkg = located ?? (linkTarget != null ? await this.readPackageJsonAt(linkTarget) : null);
+        // located package.json; fall back to reading it straight from the resolved directory when the
+        // by-name lookup came up empty. That happens whenever the package does not sit inside a
+        // `node_modules/<name>` directory it can find itself in: a cross-drive link target whose
+        // junction is unreadable, and a workspace package such as `packages/builder-util-runtime`,
+        // which nothing above it exposes under `node_modules/`. Without this fallback such a package
+        // contributes no dependencies at all (its `debug`/`sax` would vanish from the asar).
+        const pkg = located ?? (resolvedPath != null ? await this.readPackageJsonAt(resolvedPath) : null);
         const hasTreeDeps = Object.keys(value.dependencies ?? {}).length > 0 || Object.keys(value.optionalDependencies ?? {}).length > 0;
         if (!hasTreeDeps && pkg?.packageJson) {
             // pnpm list omits sub-deps for link: packages and for entries where the reported path
             // doesn't expand transitive deps (e.g. a link: package's nested dep). Use the on-disk
             // package.json to discover what to include, and pass the declared version range so that
             // resolution skips wrong-version hoisted packages and finds the correct nested copy.
-            const pkgDepsDecl = { ...(pkg.packageJson.dependencies || {}), ...(pkg.packageJson.optionalDependencies || {}) };
+            const pkgOptionalDecl = pkg.packageJson.optionalDependencies || {};
+            const pkgDepsDecl = { ...(pkg.packageJson.dependencies || {}), ...pkgOptionalDecl };
             for (const [depName, depRange] of Object.entries(pkgDepsDecl)) {
                 const resolved = await this.locateFromDepOrRoot(depName, pkg.packageDir, typeof depRange === "string" ? depRange : undefined);
                 if (!resolved) {
+                    // A miss here silently ships a broken app (the dependency is simply absent from the
+                    // asar and only fails at runtime with MODULE_NOT_FOUND), so surface it in the log
+                    // summary. Optional deps are an expected miss and get the quieter bucket.
+                    this.logMissingDependency(`${depName}@${depRange}`, pkgOptionalDecl[depName] != null);
                     continue;
                 }
                 await this.visitDep(depName, {