app-builder-lib 26.16.0 → 26.17.0

package/out/node-module-collector/nodeModulesCollector.js.map

@@ -1 +1 @@
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{ exists, log, retry, stripSensitiveEnvVars, TmpDir } from \"builder-util\"\nimport * as childProcess from \"child_process\"\nimport * as fs from \"fs-extra\"\nimport { createWriteStream } from \"fs-extra\"\nimport { Lazy } from \"lazy-val\"\nimport * as path from \"path\"\nimport { hoist, type HoisterResult, type HoisterTree } from \"./hoist\"\nimport { LogMessageByKey, ModuleManager } from \"./moduleManager\"\nimport { getPackageManagerCommand, PM } from \"./packageManager\"\nimport type { Dependency, DependencyGraph, NodeModuleInfo, PackageJson } from \"./types\"\n\nexport abstract class NodeModulesCollector<ProdDepType extends Dependency<ProdDepType, OptionalDepType>, OptionalDepType> {\n  private readonly nodeModules: NodeModuleInfo[] = []\n  protected readonly allDependencies: Map<string, ProdDepType> = new Map()\n  protected readonly productionGraph: DependencyGraph = {}\n  protected readonly cache: ModuleManager = new ModuleManager()\n\n  protected isHoisted = new Lazy<boolean>(async () => {\n    const { manager } = this.installOptions\n    const command = getPackageManagerCommand(manager)\n    const config = (await this.asyncExec(command, [\"config\", \"list\"])).stdout\n    if (config == null) {\n      log.debug({ manager }, \"unable to determine node-linker setting; assuming non-hoisted (virtual store) layout\")\n      return false\n    }\n    const lines = Object.fromEntries(config.split(\"\\n\").map(line => line.split(\"=\").map(s => s.trim())))\n    if (lines[\"node-linker\"] === \"hoisted\") {\n      log.debug({ manager }, \"node_modules are hoisted\")\n      return true\n    }\n    return false\n  })\n\n  constructor(\n    protected readonly rootDir: string,\n    private readonly tempDirManager: TmpDir\n  ) {}\n\n  /**\n   * Retrieves and collects all Node.js modules for a given package.\n   *\n   * This method orchestrates the entire module collection process by:\n   * 1. Fetching the dependency tree from the package manager\n   * 2. Collecting all dependencies recursively\n   * 3. Extracting workspace references if applicable\n   * 4. Building a production dependency graph\n   * 5. Hoisting the dependencies to their final locations\n   * 6. Resolving and returning module information\n   */\n  public async getNodeModules({ packageName }: { packageName: string }): Promise<{\n    nodeModules: NodeModuleInfo[]\n    logSummary: ModuleManager[\"logSummary\"]\n  }> {\n    const tree: ProdDepType = await this.getDependenciesTree(this.installOptions.manager)\n\n    await this.collectAllDependencies(tree, packageName)\n    const realTree: ProdDepType = this.getTreeFromWorkspaces(tree, packageName)\n    await this.extractProductionDependencyGraph(realTree, packageName)\n\n    const hoisterResult: HoisterResult = hoist(this.transformToHoisterTree(this.productionGraph, packageName), {\n      check: log.isDebugEnabled,\n    })\n\n    await this._getNodeModules(hoisterResult.dependencies, this.nodeModules)\n\n    log.debug({ packageName, depCount: this.nodeModules.length }, \"node modules collection complete\")\n\n    return { nodeModules: this.nodeModules, logSummary: this.cache.logSummary }\n  }\n\n  public abstract readonly installOptions: {\n    manager: PM\n    lockfile: string\n  }\n\n  protected abstract getArgs(): string[]\n  protected abstract extractProductionDependencyGraph(tree: Dependency<ProdDepType, OptionalDepType>, dependencyId: string): Promise<void>\n  protected abstract collectAllDependencies(tree: Dependency<ProdDepType, OptionalDepType>, appPackageName: string): Promise<void>\n\n  /**\n   * Retrieves the dependency tree from the package manager.\n   *\n   * Executes the appropriate package manager command to fetch the dependency tree and writes\n   * the output to a temporary file. Includes retry logic to handle transient failures such as\n   * incomplete JSON output or missing files. Will retry up to 1 time with exponential backoff.\n   */\n  protected async getDependenciesTree(pm: PM): Promise<ProdDepType> {\n    const command = getPackageManagerCommand(pm)\n    const args = this.getArgs()\n\n    const tempOutputFile = await this.tempDirManager.getTempFile({\n      prefix: path.basename(command, path.extname(command)),\n      suffix: \"output.json\",\n    })\n\n    return retry(\n      async () => {\n        await this.streamCollectorCommandToFile(command, args, this.rootDir, tempOutputFile)\n        const shellOutput = await fs.readFile(tempOutputFile, { encoding: \"utf8\" })\n        const result = await Promise.resolve(this.parseDependenciesTree(shellOutput))\n        return result\n      },\n      {\n        retries: 1,\n        interval: 2000,\n        backoff: 2000,\n        shouldRetry: async (error: any) => {\n          const fields: Record<string, string> = { error: error.message, tempOutputFile, cwd: this.rootDir, packageManager: pm }\n\n          if (!(await exists(tempOutputFile))) {\n            log.debug(fields, \"dependency tree output file missing, retrying\")\n            return true\n          }\n\n          const fileContent = await fs.readFile(tempOutputFile, { encoding: \"utf8\" })\n          fields.fileContentLength = fileContent.length.toString()\n\n          if (fileContent.trim().length === 0) {\n            log.debug(fields, \"dependency tree output file empty, retrying\")\n            return true\n          }\n\n          // extract small start/end sample for debugging purposes (e.g. polluted console output)\n          const lines = fileContent.split(\"\\n\")\n          const lineSampleSize = Math.min(5, lines.length / 2)\n          if (2 * lineSampleSize > 5) {\n            fields.sampleStart = lines.slice(0, lineSampleSize).join(\"\\n\")\n            fields.sampleEnd = lines.slice(-lineSampleSize).join(\"\\n\")\n          } else {\n            fields.content = fileContent\n          }\n\n          // Both indicate truncated/polluted PM output (a transient that re-running the command clears).\n          if (error.message?.includes(\"Unexpected end of JSON input\") || error.message?.includes(\"No JSON content found in output\")) {\n            log.debug(fields, \"JSON parse error in dependency tree, retrying\")\n            return true\n          }\n\n          log.error(fields, \"error parsing dependencies tree\")\n          return false\n        },\n      }\n    )\n  }\n\n  /**\n   * Parses the dependencies tree from shell command output.\n   *\n   **/\n  protected parseDependenciesTree(shellOutput: string): ProdDepType | Promise<ProdDepType> {\n    return this.extractJsonFromPollutedOutput<ProdDepType>(shellOutput)\n  }\n\n  protected extractJsonFromPollutedOutput<T>(shellOutput: string): T {\n    const consoleOutput = shellOutput.trim()\n    try {\n      // Please for the love of all that is holy, this should cover 99% of cases where npm/pnpm/yarn output is clean JSON\n      return JSON.parse(consoleOutput)\n    } catch {\n      // ignore\n    }\n\n    // DEDICATED FALLBACK FOR POLLUTED OUTPUT, non-trivial to implement correctly, not needed in most cases, and highly inefficient\n\n    // Find the first index that starts with { or [\n    const bracketOpen = Math.max(consoleOutput.indexOf(\"{\"), 0)\n    const bracketOpenSquare = Math.max(consoleOutput.indexOf(\"[\"), 0)\n    const start = Math.min(bracketOpen, bracketOpenSquare) // always non-negative due to Math.max above\n\n    for (let i = start; i < consoleOutput.length; i++) {\n      const slice = consoleOutput.slice(start, i + 1)\n      try {\n        return JSON.parse(slice)\n      } catch {\n        // ignore, try next\n      }\n    }\n    throw new Error(\"No JSON content found in output\")\n  }\n\n  protected cacheKey(pkg: Pick<ProdDepType, \"name\" | \"version\" | \"path\">): string {\n    const rel = path.relative(this.rootDir, pkg.path)\n    return `${pkg.name}::${pkg.version}::${rel ?? \".\"}`\n  }\n\n  // We use the key (alias name) instead of value.name for npm aliased packages\n  // e.g., { \"foo\": { name: \"@scope/bar\", ... } } should be stored as \"foo@version\"\n  protected normalizePackageVersion(key: string, pkg: ProdDepType) {\n    return { id: `${key}@${pkg.version}`, pkgOverride: { ...pkg, name: key } }\n  }\n\n  /**\n   * Determines if a given dependency is a production dependency of a package.\n   *\n   * Checks both the dependencies and optionalDependencies of a package to see if\n   * the specified dependency name is listed.\n   *\n   * @param depName - The name of the dependency to check\n   * @param pkg - The package to search for the dependency in\n   * @returns True if the dependency is found in either dependencies or optionalDependencies, false otherwise\n   */\n  protected isProdDependency(depName: string, pkg: ProdDepType): boolean {\n    const prodDeps = { ...pkg.dependencies, ...pkg.optionalDependencies }\n    return prodDeps[depName] != null\n  }\n\n  protected async locatePackageWithVersion(depTree: Pick<ProdDepType, \"name\" | \"version\" | \"path\">): Promise<{ packageDir: string; packageJson: PackageJson } | null> {\n    const result = await this.cache.locatePackageVersion({\n      parentDir: depTree.path,\n      pkgName: depTree.name,\n      requiredRange: depTree.version,\n    })\n    return result\n  }\n  /**\n   * Parses a dependency identifier string into name and version components.\n   *\n   * Handles both scoped packages (e.g., \"@scope/pkg@1.2.3\") and regular packages (e.g., \"pkg@1.2.3\").\n   * If the identifier is malformed or cannot be parsed, defaults to treating the entire string as\n   * the package name with an \"unknown\" version.\n   */\n  protected parseNameVersion(identifier: string): { name: string; version: string } {\n    let at: number\n    if (identifier.startsWith(\"@\")) {\n      // Scoped package: find the version separator after the scope (e.g. \"@scope/pkg@1.2.3\")\n      const slashIndex = identifier.indexOf(\"/\")\n      if (slashIndex === -1) {\n        return { name: identifier, version: \"unknown\" }\n      }\n      at = identifier.indexOf(\"@\", slashIndex + 1)\n    } else {\n      at = identifier.indexOf(\"@\")\n    }\n    if (at <= 0) {\n      return { name: identifier, version: \"unknown\" }\n    }\n    return { name: identifier.slice(0, at), version: identifier.slice(at + 1) }\n  }\n\n  /**\n   * Retrieves the dependency tree and handles workspace package self-references.\n   *\n   * If the project is a workspace project, this method removes the root package's self-reference\n   * from the dependency tree to avoid circular dependencies. It promotes the root package's\n   * direct dependencies to the top level of the tree.\n   *\n   * @param tree - The original dependency tree\n   * @param packageName - The name of the package to check for and remove from the tree\n   * @returns The extracted dependency subtree\n   */\n  protected getTreeFromWorkspaces(tree: ProdDepType, packageName: string): ProdDepType {\n    if (tree.workspaces && tree.dependencies) {\n      for (const [key, value] of Object.entries(tree.dependencies)) {\n        if (key === packageName) {\n          return value\n        }\n      }\n    }\n\n    return tree\n  }\n\n  private transformToHoisterTree(obj: DependencyGraph, key: string, nodes: Map<string, HoisterTree> = new Map()): HoisterTree {\n    let node = nodes.get(key)\n    const { name, version } = this.parseNameVersion(key)\n\n    if (!node) {\n      node = {\n        name,\n        identName: name,\n        reference: version,\n        dependencies: new Set<HoisterTree>(),\n        peerNames: new Set<string>(),\n      }\n\n      nodes.set(key, node)\n\n      const deps = (obj[key] || {}).dependencies || []\n      for (const dep of deps) {\n        const child = this.transformToHoisterTree(obj, dep, nodes)\n        node.dependencies.add(child)\n      }\n    }\n\n    return node\n  }\n\n  private async _getNodeModules(dependencies: Set<HoisterResult>, result: NodeModuleInfo[]) {\n    if (dependencies.size === 0) {\n      return\n    }\n\n    for (const d of dependencies.values()) {\n      const reference = [...d.references][0]\n      const key = `${d.name}@${reference}`\n      // Normalize the path to handle mixed separators from pnpm JSON output on Windows\n      const rawPath = this.allDependencies.get(key)?.path\n      const p = rawPath != null ? path.normalize(rawPath) : undefined\n      if (p === undefined) {\n        this.cache.logSummary[LogMessageByKey.PKG_NOT_FOUND].push(key)\n        continue\n      }\n\n      // fix npm list issue\n      // https://github.com/npm/cli/issues/8535\n      if (!(await this.cache.exists[p])) {\n        this.logMissingDependency(key)\n        continue\n      }\n\n      const node: NodeModuleInfo = {\n        name: d.name,\n        version: reference,\n        dir: await this.cache.realPath[p],\n      }\n      result.push(node)\n      if (d.dependencies.size > 0) {\n        node.dependencies = []\n        await this._getNodeModules(d.dependencies, node.dependencies)\n      }\n    }\n    result.sort((a, b) => a.name.localeCompare(b.name))\n  }\n\n  /**\n   * Records a dependency that could not be resolved on disk in the log summary.\n   *\n   * A platform-specific package name (e.g. `sass-embedded-linux-x64`) is always classified as a\n   * platform-specific optional dependency. Otherwise, `isDeclaredOptional` decides the bucket: a\n   * caller that *knows* the dependency was declared in `optionalDependencies` (e.g. the pnpm\n   * collector's optional-dependency check) reports a missing *optional* dependency — an expected\n   * condition — rather than the `PKG_NOT_ON_DISK` warning reserved for genuinely missing\n   * production dependencies.\n   */\n  protected logMissingDependency(pkgName: string, isDeclaredOptional = false) {\n    const PLATFORM_PACKAGE_RE = /(linux|win32|darwin|freebsd|android)[-_](x64|arm64|ia32|arm|ppc64|s390x|loong64|riscv64|universal)/\n    const diskLogKey = PLATFORM_PACKAGE_RE.test(pkgName)\n      ? LogMessageByKey.PKG_OPTIONAL_PLATFORM_NOT_INSTALLED\n      : isDeclaredOptional\n        ? LogMessageByKey.PKG_OPTIONAL_NOT_INSTALLED\n        : LogMessageByKey.PKG_NOT_ON_DISK\n    this.cache.logSummary[diskLogKey].push(pkgName)\n  }\n\n  protected async asyncExec(command: string, args: string[], cwd: string = this.rootDir): Promise<{ stdout: string | undefined; stderr: string | undefined }> {\n    const file = await this.tempDirManager.getTempFile({ prefix: \"exec-\", suffix: \".txt\" })\n    try {\n      await this.streamCollectorCommandToFile(command, args, cwd, file)\n      const result = await fs.readFile(file, { encoding: \"utf8\" })\n      return { stdout: result?.trim(), stderr: undefined }\n    } catch (error: any) {\n      log.debug({ error: error.message }, \"failed to execute command\")\n      return { stdout: undefined, stderr: error.message }\n    }\n  }\n\n  /**\n   * Executes a command and streams its output to a file.\n   *\n   * Spawns a child process to execute the specified command with arguments, capturing stdout\n   * to a file. On Windows, wraps the invocation in `powershell.exe -EncodedCommand` (UTF-16LE\n   * base64) to avoid spawning `.cmd` shims directly and to eliminate shell-injection surface area.\n   * Enables corepack strict mode by default but allows process.env overrides.\n   *\n   * Special handling for `npm list` exit code 1, which is expected in certain scenarios.\n   *\n   * @param command - The command to execute\n   * @param args - Array of command-line arguments\n   * @param cwd - The working directory to execute the command in\n   * @param tempOutputFile - The path to the temporary file where stdout will be written\n   * @returns Promise that resolves when the command completes successfully or rejects if it fails\n   * @throws {Error} If the child process spawn fails or exits with a non-zero code\n   */\n  protected async streamCollectorCommandToFile(command: string, args: string[], cwd: string, tempOutputFile: string) {\n    // Derive execName from the original command so the npm-list shouldIgnore check below keys off the\n    // real invocation (e.g. \"npm\"), not the \"powershell\" wrapper we spawn on Windows.\n    const execName = path.basename(command, path.extname(command))\n\n    // On Windows the package-manager command is typically a `.cmd` shim (npm.cmd/pnpm.cmd/yarn.cmd),\n    // which Node can no longer spawn directly (CVE-2024-27980). Rather than spawn with `shell: true` —\n    // which emits the DEP0190 \"args with shell\" deprecation warning and forces manual metacharacter\n    // escaping — wrap the invocation in a single PowerShell `-EncodedCommand`. The base64 (UTF-16LE)\n    // payload sidesteps every shell-quoting layer, and `powershell.exe` is a real executable we spawn\n    // directly with no shell. See buildPowerShellEncodedArgs for the UTF-8 / exit-code handling.\n    const [spawnCommand, spawnArgs] = process.platform === \"win32\" ? ([\"powershell.exe\", buildPowerShellEncodedArgs(command, args)] as const) : ([command, args] as const)\n\n    await new Promise<void>((resolve, reject) => {\n      const outStream = createWriteStream(tempOutputFile)\n\n      const child = childProcess.spawn(spawnCommand, spawnArgs, {\n        cwd,\n        // Package manager invocations do not need signing/publishing credentials.\n        env: { COREPACK_ENABLE_STRICT: \"0\", ...stripSensitiveEnvVars(process.env) },\n      })\n\n      let stderr = \"\"\n      // The process can close before all piped stdout has been flushed to disk. Resolving on the\n      // child's \"close\" alone races the write stream and lets the caller read a TRUNCATED file\n      // (manifesting as \"No JSON content found in output\"). Gate the settle on BOTH the child exit\n      // (for the code/stderr) and the write stream's \"finish\" (all bytes flushed).\n      let exitCode: number | null = null\n      let childClosed = false\n      let streamFinished = false\n      let settled = false\n\n      // `pipe` ends `outStream` when stdout EOFs, which triggers its \"finish\" once flushed.\n      child.stdout.pipe(outStream)\n      child.stderr.on(\"data\", chunk => {\n        stderr += chunk.toString()\n      })\n\n      const fail = (err: Error) => {\n        if (settled) {\n          return\n        }\n        settled = true\n        // Best-effort cleanup: stop the child and close the stream so we don't\n        // waste CPU writing to a broken fd after rejection.\n        try {\n          child.kill()\n        } catch {\n          // ignore\n        }\n        try {\n          outStream.destroy()\n        } catch {\n          // ignore\n        }\n        reject(err)\n      }\n\n      const settle = () => {\n        if (settled || !childClosed || !streamFinished) {\n          return\n        }\n        const code = exitCode\n        // https://github.com/npm/npm/issues/17624\n        const shouldIgnore = code === 1 && \"npm\" === execName.toLowerCase() && args.includes(\"list\")\n        if (shouldIgnore) {\n          log.debug(null, \"`npm list` returned non-zero exit code, but it MIGHT be expected (https://github.com/npm/npm/issues/17624). Check stderr for details.\")\n        }\n        if (stderr.length > 0) {\n          log.debug({ stderr }, \"note: there was node module collector output on stderr\")\n          // Only surface stderr as a user-visible warning when the exit code itself is unexpected.\n          // When shouldIgnore is true (npm list exit code 1) the stderr is an anticipated side\n          // effect of package-manager features like yarn resolutions or npm overrides that cause\n          // npm to report ELSPROBLEMS for aliased packages it considers \"invalid\".\n          if (!shouldIgnore) {\n            this.cache.logSummary[LogMessageByKey.PKG_COLLECTOR_OUTPUT].push(stderr)\n          }\n        }\n        settled = true\n        const shouldResolve = code === 0 || shouldIgnore\n        return shouldResolve ? resolve() : reject(new Error(`Node module collector process exited with code ${code}:\\n${stderr}`))\n      }\n\n      outStream.on(\"error\", err => fail(new Error(`Node module collector failed writing output (${command}): ${err.message}`)))\n      outStream.on(\"finish\", () => {\n        streamFinished = true\n        settle()\n      })\n      child.on(\"error\", err => {\n        fail(new Error(`Node module collector spawn (${command} ${JSON.stringify(args)}) failed: ${err.message}`))\n      })\n      child.on(\"close\", code => {\n        exitCode = code\n        childClosed = true\n        settle()\n      })\n    })\n  }\n}\n\n/**\n * Build the argv for invoking a Windows command through `powershell.exe -EncodedCommand`.\n *\n * Each token is wrapped in a PowerShell single-quoted string (with embedded single quotes doubled),\n * so no character is interpreted by a shell. The script:\n *   - pins `[Console]::OutputEncoding` to UTF-8 *without* a BOM so the JSON dependency tree is not\n *     corrupted by the console's OEM code page (and no BOM is prepended to break `JSON.parse`),\n *   - invokes the command via the call operator `&`,\n *   - re-emits the command's own exit code via `exit $LASTEXITCODE` (e.g. `npm list` returns 1 in\n *     expected scenarios, which the caller's shouldIgnore logic relies on).\n *\n * The whole script is base64-encoded as UTF-16LE per PowerShell's `-EncodedCommand` contract.\n */\nexport function buildPowerShellEncodedArgs(command: string, args: string[]): string[] {\n  const psQuote = (value: string) => `'${value.replace(/'/g, \"''\")}'`\n  const invocation = [\"&\", psQuote(command), ...args.map(psQuote)].join(\" \")\n  const script = `[Console]::OutputEncoding=[System.Text.UTF8Encoding]::new($false); ${invocation}; exit $LASTEXITCODE`\n  const encoded = Buffer.from(script, \"utf16le\").toString(\"base64\")\n  return [\"-NoProfile\", \"-NonInteractive\", \"-EncodedCommand\", encoded]\n}\n"]}
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{ exists, log, retry, stripSensitiveEnvVars, TmpDir } from \"builder-util\"\nimport * as childProcess from \"child_process\"\nimport * as fs from \"fs-extra\"\nimport { createWriteStream } from \"fs-extra\"\nimport { Lazy } from \"lazy-val\"\nimport * as path from \"path\"\nimport { hoist, type HoisterResult, type HoisterTree } from \"./hoist\"\nimport { LogMessageByKey, ModuleManager } from \"./moduleManager\"\nimport { getPackageManagerCommand, PM } from \"./packageManager\"\nimport type { Dependency, DependencyGraph, NodeModuleInfo, PackageJson } from \"./types\"\n\nexport abstract class NodeModulesCollector<ProdDepType extends Dependency<ProdDepType, OptionalDepType>, OptionalDepType> {\n  private readonly nodeModules: NodeModuleInfo[] = []\n  protected readonly allDependencies: Map<string, ProdDepType> = new Map()\n  protected readonly productionGraph: DependencyGraph = {}\n  protected readonly cache: ModuleManager = new ModuleManager()\n\n  protected isHoisted = new Lazy<boolean>(async () => {\n    const { manager } = this.installOptions\n    const command = getPackageManagerCommand(manager)\n    const config = (await this.asyncExec(command, [\"config\", \"list\"])).stdout\n    if (config == null) {\n      log.debug({ manager }, \"unable to determine node-linker setting; assuming non-hoisted (virtual store) layout\")\n      return false\n    }\n    const lines = Object.fromEntries(config.split(\"\\n\").map(line => line.split(\"=\").map(s => s.trim())))\n    if (lines[\"node-linker\"] === \"hoisted\") {\n      log.debug({ manager }, \"node_modules are hoisted\")\n      return true\n    }\n    return false\n  })\n\n  constructor(\n    protected readonly rootDir: string,\n    private readonly tempDirManager: TmpDir\n  ) {}\n\n  /**\n   * Retrieves and collects all Node.js modules for a given package.\n   *\n   * This method orchestrates the entire module collection process by:\n   * 1. Fetching the dependency tree from the package manager\n   * 2. Collecting all dependencies recursively\n   * 3. Extracting workspace references if applicable\n   * 4. Building a production dependency graph\n   * 5. Hoisting the dependencies to their final locations\n   * 6. Resolving and returning module information\n   */\n  public async getNodeModules({ packageName }: { packageName: string }): Promise<{\n    nodeModules: NodeModuleInfo[]\n    logSummary: ModuleManager[\"logSummary\"]\n  }> {\n    const tree: ProdDepType = await this.getDependenciesTree(this.installOptions.manager)\n\n    await this.collectAllDependencies(tree, packageName)\n    const realTree: ProdDepType = this.getTreeFromWorkspaces(tree, packageName)\n    await this.extractProductionDependencyGraph(realTree, packageName)\n\n    const hoisterResult: HoisterResult = hoist(this.transformToHoisterTree(this.productionGraph, packageName), {\n      check: log.isDebugEnabled,\n    })\n\n    await this._getNodeModules(hoisterResult.dependencies, this.nodeModules)\n\n    log.debug({ packageName, depCount: this.nodeModules.length }, \"node modules collection complete\")\n\n    return { nodeModules: this.nodeModules, logSummary: this.cache.logSummary }\n  }\n\n  public abstract readonly installOptions: {\n    manager: PM\n    lockfile: string\n  }\n\n  protected abstract getArgs(): string[]\n  protected abstract extractProductionDependencyGraph(tree: Dependency<ProdDepType, OptionalDepType>, dependencyId: string): Promise<void>\n  protected abstract collectAllDependencies(tree: Dependency<ProdDepType, OptionalDepType>, appPackageName: string): Promise<void>\n\n  /**\n   * Retrieves the dependency tree from the package manager.\n   *\n   * Executes the appropriate package manager command to fetch the dependency tree and writes\n   * the output to a temporary file. Includes retry logic to handle transient failures such as\n   * incomplete JSON output or missing files. Will retry up to 1 time with exponential backoff.\n   */\n  protected async getDependenciesTree(pm: PM): Promise<ProdDepType> {\n    const command = getPackageManagerCommand(pm)\n    const args = this.getArgs()\n\n    const tempOutputFile = await this.tempDirManager.getTempFile({\n      prefix: path.basename(command, path.extname(command)),\n      suffix: \"output.json\",\n    })\n\n    return retry(\n      async () => {\n        const { code, stderr } = await this.streamCollectorCommandToFile(command, args, this.rootDir, tempOutputFile)\n        const shellOutput = await fs.readFile(tempOutputFile, { encoding: \"utf8\" })\n        if (shellOutput.trim().length === 0) {\n          // Parsing an empty string would only yield a misleading \"No JSON content found in output\" (#10208).\n          // With npm this usually means npm itself threw while writing its buffered JSON tree at exit: npm's exit\n          // handler swallows that exception and exits 1 with nothing on stdout and only `verbose exit 1` in its log.\n          throw new Error(\n            `\\`${[path.basename(command), ...args].join(\" \")}\\` (cwd: ${this.rootDir}) exited with code ${code} and produced no output on stdout; ` +\n              `with npm this usually means npm itself failed while writing its JSON dependency tree. stderr: ${stderr.trim().length > 0 ? stderr.trim() : \"(empty)\"}`\n          )\n        }\n        const result = await Promise.resolve(this.parseDependenciesTree(shellOutput))\n        return result\n      },\n      {\n        retries: 1,\n        interval: 2000,\n        backoff: 2000,\n        shouldRetry: async (error: any) => {\n          const fields: Record<string, string> = { error: error.message, tempOutputFile, cwd: this.rootDir, packageManager: pm }\n\n          if (!(await exists(tempOutputFile))) {\n            log.debug(fields, \"dependency tree output file missing, retrying\")\n            return true\n          }\n\n          const fileContent = await fs.readFile(tempOutputFile, { encoding: \"utf8\" })\n          fields.fileContentLength = fileContent.length.toString()\n\n          if (fileContent.trim().length === 0) {\n            log.debug(fields, \"dependency tree output file empty, retrying\")\n            return true\n          }\n\n          // extract small start/end sample for debugging purposes (e.g. polluted console output)\n          const lines = fileContent.split(\"\\n\")\n          const lineSampleSize = Math.min(5, lines.length / 2)\n          if (2 * lineSampleSize > 5) {\n            fields.sampleStart = lines.slice(0, lineSampleSize).join(\"\\n\")\n            fields.sampleEnd = lines.slice(-lineSampleSize).join(\"\\n\")\n          } else {\n            fields.content = fileContent\n          }\n\n          // Both indicate truncated/polluted PM output (a transient that re-running the command clears).\n          if (error.message?.includes(\"Unexpected end of JSON input\") || error.message?.includes(\"No JSON content found in output\")) {\n            log.debug(fields, \"JSON parse error in dependency tree, retrying\")\n            return true\n          }\n\n          log.error(fields, \"error parsing dependencies tree\")\n          return false\n        },\n      }\n    )\n  }\n\n  /**\n   * Parses the dependencies tree from shell command output.\n   *\n   **/\n  protected parseDependenciesTree(shellOutput: string): ProdDepType | Promise<ProdDepType> {\n    return this.extractJsonFromPollutedOutput<ProdDepType>(shellOutput)\n  }\n\n  protected extractJsonFromPollutedOutput<T>(shellOutput: string): T {\n    const consoleOutput = shellOutput.trim()\n    try {\n      // Please for the love of all that is holy, this should cover 99% of cases where npm/pnpm/yarn output is clean JSON\n      return JSON.parse(consoleOutput)\n    } catch {\n      // ignore\n    }\n\n    // DEDICATED FALLBACK FOR POLLUTED OUTPUT, non-trivial to implement correctly, not needed in most cases, and highly inefficient\n\n    // Find the first index that starts with { or [\n    const bracketOpen = Math.max(consoleOutput.indexOf(\"{\"), 0)\n    const bracketOpenSquare = Math.max(consoleOutput.indexOf(\"[\"), 0)\n    const start = Math.min(bracketOpen, bracketOpenSquare) // always non-negative due to Math.max above\n\n    for (let i = start; i < consoleOutput.length; i++) {\n      const slice = consoleOutput.slice(start, i + 1)\n      try {\n        return JSON.parse(slice)\n      } catch {\n        // ignore, try next\n      }\n    }\n    throw new Error(\"No JSON content found in output\")\n  }\n\n  protected cacheKey(pkg: Pick<ProdDepType, \"name\" | \"version\" | \"path\">): string {\n    const rel = path.relative(this.rootDir, pkg.path)\n    return `${pkg.name}::${pkg.version}::${rel ?? \".\"}`\n  }\n\n  // We use the key (alias name) instead of value.name for npm aliased packages\n  // e.g., { \"foo\": { name: \"@scope/bar\", ... } } should be stored as \"foo@version\"\n  protected normalizePackageVersion(key: string, pkg: ProdDepType) {\n    return { id: `${key}@${pkg.version}`, pkgOverride: { ...pkg, name: key } }\n  }\n\n  /**\n   * Determines if a given dependency is a production dependency of a package.\n   *\n   * Checks both the dependencies and optionalDependencies of a package to see if\n   * the specified dependency name is listed.\n   *\n   * @param depName - The name of the dependency to check\n   * @param pkg - The package to search for the dependency in\n   * @returns True if the dependency is found in either dependencies or optionalDependencies, false otherwise\n   */\n  protected isProdDependency(depName: string, pkg: ProdDepType): boolean {\n    const prodDeps = { ...pkg.dependencies, ...pkg.optionalDependencies }\n    return prodDeps[depName] != null\n  }\n\n  protected async locatePackageWithVersion(depTree: Pick<ProdDepType, \"name\" | \"version\" | \"path\">): Promise<{ packageDir: string; packageJson: PackageJson } | null> {\n    const result = await this.cache.locatePackageVersion({\n      parentDir: depTree.path,\n      pkgName: depTree.name,\n      requiredRange: depTree.version,\n    })\n    return result\n  }\n  /**\n   * Parses a dependency identifier string into name and version components.\n   *\n   * Handles both scoped packages (e.g., \"@scope/pkg@1.2.3\") and regular packages (e.g., \"pkg@1.2.3\").\n   * If the identifier is malformed or cannot be parsed, defaults to treating the entire string as\n   * the package name with an \"unknown\" version.\n   */\n  protected parseNameVersion(identifier: string): { name: string; version: string } {\n    let at: number\n    if (identifier.startsWith(\"@\")) {\n      // Scoped package: find the version separator after the scope (e.g. \"@scope/pkg@1.2.3\")\n      const slashIndex = identifier.indexOf(\"/\")\n      if (slashIndex === -1) {\n        return { name: identifier, version: \"unknown\" }\n      }\n      at = identifier.indexOf(\"@\", slashIndex + 1)\n    } else {\n      at = identifier.indexOf(\"@\")\n    }\n    if (at <= 0) {\n      return { name: identifier, version: \"unknown\" }\n    }\n    return { name: identifier.slice(0, at), version: identifier.slice(at + 1) }\n  }\n\n  /**\n   * Retrieves the dependency tree and handles workspace package self-references.\n   *\n   * If the project is a workspace project, this method removes the root package's self-reference\n   * from the dependency tree to avoid circular dependencies. It promotes the root package's\n   * direct dependencies to the top level of the tree.\n   *\n   * @param tree - The original dependency tree\n   * @param packageName - The name of the package to check for and remove from the tree\n   * @returns The extracted dependency subtree\n   */\n  protected getTreeFromWorkspaces(tree: ProdDepType, packageName: string): ProdDepType {\n    if (tree.workspaces && tree.dependencies) {\n      for (const [key, value] of Object.entries(tree.dependencies)) {\n        if (key === packageName) {\n          return value\n        }\n      }\n    }\n\n    return tree\n  }\n\n  private transformToHoisterTree(obj: DependencyGraph, key: string, nodes: Map<string, HoisterTree> = new Map()): HoisterTree {\n    let node = nodes.get(key)\n    const { name, version } = this.parseNameVersion(key)\n\n    if (!node) {\n      node = {\n        name,\n        identName: name,\n        reference: version,\n        dependencies: new Set<HoisterTree>(),\n        peerNames: new Set<string>(),\n      }\n\n      nodes.set(key, node)\n\n      const deps = (obj[key] || {}).dependencies || []\n      for (const dep of deps) {\n        const child = this.transformToHoisterTree(obj, dep, nodes)\n        // a package that declares itself as a dependency (e.g. libsql) must not produce a self-edge\n        if (child !== node) {\n          node.dependencies.add(child)\n        }\n      }\n    }\n\n    return node\n  }\n\n  private async _getNodeModules(dependencies: Set<HoisterResult>, result: NodeModuleInfo[], ancestors: Set<HoisterResult> = new Set()) {\n    if (dependencies.size === 0) {\n      return\n    }\n\n    for (const d of dependencies.values()) {\n      // dependency cycles (including self-references) must not recurse\n      if (ancestors.has(d)) {\n        continue\n      }\n      const reference = [...d.references][0]\n      const key = `${d.name}@${reference}`\n      // Normalize the path to handle mixed separators from pnpm JSON output on Windows\n      const rawPath = this.allDependencies.get(key)?.path\n      const p = rawPath != null ? path.normalize(rawPath) : undefined\n      if (p === undefined) {\n        this.cache.logSummary[LogMessageByKey.PKG_NOT_FOUND].push(key)\n        continue\n      }\n\n      // fix npm list issue\n      // https://github.com/npm/cli/issues/8535\n      if (!(await this.cache.exists[p])) {\n        this.logMissingDependency(key)\n        continue\n      }\n\n      const node: NodeModuleInfo = {\n        name: d.name,\n        version: reference,\n        dir: await this.cache.realPath[p],\n      }\n      result.push(node)\n      if (d.dependencies.size > 0) {\n        node.dependencies = []\n        ancestors.add(d)\n        await this._getNodeModules(d.dependencies, node.dependencies, ancestors)\n        ancestors.delete(d)\n      }\n    }\n    result.sort((a, b) => a.name.localeCompare(b.name))\n  }\n\n  /**\n   * Records a dependency that could not be resolved on disk in the log summary.\n   *\n   * A platform-specific package name (e.g. `sass-embedded-linux-x64`) is always classified as a\n   * platform-specific optional dependency. Otherwise, `isDeclaredOptional` decides the bucket: a\n   * caller that *knows* the dependency was declared in `optionalDependencies` (e.g. the pnpm\n   * collector's optional-dependency check) reports a missing *optional* dependency — an expected\n   * condition — rather than the `PKG_NOT_ON_DISK` warning reserved for genuinely missing\n   * production dependencies.\n   */\n  protected logMissingDependency(pkgName: string, isDeclaredOptional = false) {\n    const PLATFORM_PACKAGE_RE = /(linux|win32|darwin|freebsd|android)[-_](x64|arm64|ia32|arm|ppc64|s390x|loong64|riscv64|universal)/\n    const diskLogKey = PLATFORM_PACKAGE_RE.test(pkgName)\n      ? LogMessageByKey.PKG_OPTIONAL_PLATFORM_NOT_INSTALLED\n      : isDeclaredOptional\n        ? LogMessageByKey.PKG_OPTIONAL_NOT_INSTALLED\n        : LogMessageByKey.PKG_NOT_ON_DISK\n    this.cache.logSummary[diskLogKey].push(pkgName)\n  }\n\n  protected async asyncExec(command: string, args: string[], cwd: string = this.rootDir): Promise<{ stdout: string | undefined; stderr: string | undefined }> {\n    const file = await this.tempDirManager.getTempFile({ prefix: \"exec-\", suffix: \".txt\" })\n    try {\n      await this.streamCollectorCommandToFile(command, args, cwd, file)\n      const result = await fs.readFile(file, { encoding: \"utf8\" })\n      return { stdout: result?.trim(), stderr: undefined }\n    } catch (error: any) {\n      log.debug({ error: error.message }, \"failed to execute command\")\n      return { stdout: undefined, stderr: error.message }\n    }\n  }\n\n  /**\n   * Executes a command and streams its output to a file.\n   *\n   * Spawns a child process to execute the specified command with arguments, capturing stdout\n   * to a file. On Windows, wraps the invocation in `powershell.exe -EncodedCommand` (UTF-16LE\n   * base64) to avoid spawning `.cmd` shims directly and to eliminate shell-injection surface area.\n   * Enables corepack strict mode by default but allows process.env overrides.\n   *\n   * Special handling for `npm list` exit code 1, which is expected in certain scenarios.\n   *\n   * @param command - The command to execute\n   * @param args - Array of command-line arguments\n   * @param cwd - The working directory to execute the command in\n   * @param tempOutputFile - The path to the temporary file where stdout will be written\n   * @returns Promise that resolves with the exit code and captured stderr when the command completes\n   * successfully (or with a tolerated exit code), or rejects if it fails\n   * @throws {Error} If the child process spawn fails or exits with a non-zero, unexpected code\n   */\n  protected async streamCollectorCommandToFile(command: string, args: string[], cwd: string, tempOutputFile: string): Promise<{ code: number; stderr: string }> {\n    // Derive execName from the original command so the npm-list shouldIgnore check below keys off the\n    // real invocation (e.g. \"npm\"), not the \"powershell\" wrapper we spawn on Windows.\n    const execName = path.basename(command, path.extname(command))\n\n    // On Windows the package-manager command is typically a `.cmd` shim (npm.cmd/pnpm.cmd/yarn.cmd),\n    // which Node can no longer spawn directly (CVE-2024-27980). Rather than spawn with `shell: true` —\n    // which emits the DEP0190 \"args with shell\" deprecation warning and forces manual metacharacter\n    // escaping — wrap the invocation in a single PowerShell `-EncodedCommand`. The base64 (UTF-16LE)\n    // payload sidesteps every shell-quoting layer, and `powershell.exe` is a real executable we spawn\n    // directly with no shell. See buildPowerShellEncodedArgs for the UTF-8 / exit-code handling.\n    const [spawnCommand, spawnArgs] = process.platform === \"win32\" ? ([\"powershell.exe\", buildPowerShellEncodedArgs(command, args)] as const) : ([command, args] as const)\n\n    return await new Promise<{ code: number; stderr: string }>((resolve, reject) => {\n      const outStream = createWriteStream(tempOutputFile)\n\n      const child = childProcess.spawn(spawnCommand, spawnArgs, {\n        cwd,\n        // Package manager invocations do not need signing/publishing credentials.\n        env: { COREPACK_ENABLE_STRICT: \"0\", ...stripSensitiveEnvVars(process.env) },\n      })\n\n      let stderr = \"\"\n      // The process can close before all piped stdout has been flushed to disk. Resolving on the\n      // child's \"close\" alone races the write stream and lets the caller read a TRUNCATED file\n      // (manifesting as \"No JSON content found in output\"). Gate the settle on BOTH the child exit\n      // (for the code/stderr) and the write stream's \"finish\" (all bytes flushed).\n      let exitCode: number | null = null\n      let childClosed = false\n      let streamFinished = false\n      let settled = false\n\n      // `pipe` ends `outStream` when stdout EOFs, which triggers its \"finish\" once flushed.\n      child.stdout.pipe(outStream)\n      child.stderr.on(\"data\", chunk => {\n        stderr += chunk.toString()\n      })\n\n      const fail = (err: Error) => {\n        if (settled) {\n          return\n        }\n        settled = true\n        // Best-effort cleanup: stop the child and close the stream so we don't\n        // waste CPU writing to a broken fd after rejection.\n        try {\n          child.kill()\n        } catch {\n          // ignore\n        }\n        try {\n          outStream.destroy()\n        } catch {\n          // ignore\n        }\n        reject(err)\n      }\n\n      const settle = () => {\n        if (settled || !childClosed || !streamFinished) {\n          return\n        }\n        const code = exitCode\n        // https://github.com/npm/npm/issues/17624\n        const shouldIgnore = code === 1 && \"npm\" === execName.toLowerCase() && args.includes(\"list\")\n        if (shouldIgnore) {\n          log.debug(null, \"`npm list` returned non-zero exit code, but it MIGHT be expected (https://github.com/npm/npm/issues/17624). Check stderr for details.\")\n        }\n        if (stderr.length > 0) {\n          log.debug({ stderr }, \"note: there was node module collector output on stderr\")\n          // Only surface stderr as a user-visible warning when the exit code itself is unexpected.\n          // When shouldIgnore is true (npm list exit code 1) the stderr is an anticipated side\n          // effect of package-manager features like yarn resolutions or npm overrides that cause\n          // npm to report ELSPROBLEMS for aliased packages it considers \"invalid\".\n          if (!shouldIgnore) {\n            this.cache.logSummary[LogMessageByKey.PKG_COLLECTOR_OUTPUT].push(stderr)\n          }\n        }\n        settled = true\n        const shouldResolve = code === 0 || shouldIgnore\n        // `code` is 0 or the tolerated `npm list` 1 whenever we resolve, so it is never null here.\n        return shouldResolve ? resolve({ code: code as number, stderr }) : reject(new Error(`Node module collector process exited with code ${code}:\\n${stderr}`))\n      }\n\n      outStream.on(\"error\", err => fail(new Error(`Node module collector failed writing output (${command}): ${err.message}`)))\n      outStream.on(\"finish\", () => {\n        streamFinished = true\n        settle()\n      })\n      child.on(\"error\", err => {\n        fail(new Error(`Node module collector spawn (${command} ${JSON.stringify(args)}) failed: ${err.message}`))\n      })\n      child.on(\"close\", code => {\n        exitCode = code\n        childClosed = true\n        settle()\n      })\n    })\n  }\n}\n\n/**\n * Build the argv for invoking a Windows command through `powershell.exe -EncodedCommand`.\n *\n * Each token is wrapped in a PowerShell single-quoted string (with embedded single quotes doubled),\n * so no character is interpreted by a shell. The script:\n *   - pins `[Console]::OutputEncoding` to UTF-8 *without* a BOM so the JSON dependency tree is not\n *     corrupted by the console's OEM code page (and no BOM is prepended to break `JSON.parse`),\n *   - invokes the command via the call operator `&`,\n *   - re-emits the command's own exit code via `exit $LASTEXITCODE` (e.g. `npm list` returns 1 in\n *     expected scenarios, which the caller's shouldIgnore logic relies on).\n *\n * The whole script is base64-encoded as UTF-16LE per PowerShell's `-EncodedCommand` contract.\n */\nexport function buildPowerShellEncodedArgs(command: string, args: string[]): string[] {\n  const psQuote = (value: string) => `'${value.replace(/'/g, \"''\")}'`\n  const invocation = [\"&\", psQuote(command), ...args.map(psQuote)].join(\" \")\n  const script = `[Console]::OutputEncoding=[System.Text.UTF8Encoding]::new($false); ${invocation}; exit $LASTEXITCODE`\n  const encoded = Buffer.from(script, \"utf16le\").toString(\"base64\")\n  return [\"-NoProfile\", \"-NonInteractive\", \"-EncodedCommand\", encoded]\n}\n"]}

package/out/node-module-collector/pnpmNodeModulesCollector.d.ts

@@ -1,3 +1,4 @@
+import { Lazy } from "lazy-val";
 import { NodeModulesCollector } from "./nodeModulesCollector";
 import { PM } from "./packageManager";
 import { PnpmDependency } from "./types";
@@ -9,6 +10,30 @@ export declare class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmD
     private _allWorkspacePackages;
     private _pnpmMajorVersion;
     private readonly pnpmVersion;
+    /**
+     * Detect pnpm's installed layout from the on-disk structure rather than `pnpm config list`.
+     * pnpm 11 no longer echoes `node-linker` (from `.npmrc`) in `config list`, so the base-class
+     * config-parsing detection silently reports "not hoisted" for a hoisted install, which would
+     * disable the downward search needed to find version-conflicted nested deps.
+     *
+     * In the default isolated store every regular top-level package resolves — through a symlink
+     * on POSIX, a junction on Windows — into `node_modules/.pnpm/<name>@<ver>/node_modules/<name>`.
+     * In a hoisted layout the same package is a real directory directly under `node_modules`.
+     * `realpath` transparently follows both symlinks and junctions, so a layout is isolated iff
+     * *any* top-level package's real path routes through `.pnpm`. We scan rather than sample the
+     * first entry because `link:` packages resolve to their source (never under `.pnpm`) and could
+     * otherwise mask an isolated store.
+     */
+    protected isHoisted: Lazy<boolean>;
+    /**
+     * The pnpm workspace root containing `rootDir` (nearest ancestor with `pnpm-workspace.yaml`, as pnpm
+     * itself resolves it), or null outside a workspace or when `rootDir` is the workspace root.
+     */
+    private readonly workspaceRoot;
+    /** `rootDir`, then the workspace root when `rootDir` is a workspace package. */
+    private readonly layoutRoots;
+    /** Returns true if `nmDir` is an isolated (`.pnpm`) store, false if hoisted, null if it holds no packages. */
+    private scanNodeModulesLayout;
     /**
      * Memo for `locateFromDepOrRoot`, keyed by `name@version`. pnpm's content-addressed virtual
      * store guarantees that any given `name@version` resolves to a single location on disk, so
@@ -22,6 +47,9 @@ export declare class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmD
      * every shared subtree of the pnpm list output, exploding work in deep workspaces.
      */
     private readonly collectedDeps;
+    /** Reverse index of `allDependencies` keyed by package name (without version). Built once on
+     *  first access inside `extractProductionDependencyGraph`, after `allDependencies` is settled. */
+    private _allDepsByName;
     /**
      * Returns the workspace packages to iterate over, gated by detected pnpm version:
      * - pnpm v11+: multi-entry workspace output → return the full parsed array
@@ -29,6 +57,7 @@ export declare class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmD
      */
     private get allWorkspacePackages();
     protected getArgs(): string[];
+    private getAllDepsByName;
     /**
      * Locate a package version, preferring the dep's own reported path before falling back to rootDir.
      * This is critical for pnpm non-hoisted (virtual store) setups where each package has its own
@@ -37,6 +66,19 @@ export declare class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmD
      */
     private locateFromDepOrRoot;
     protected extractProductionDependencyGraph(tree: PnpmDependency, dependencyId: string): Promise<void>;
+    /**
+     * Resolve a dependency that `pnpm list` left out of a package's tree to its `allDependencies` entry.
+     * The lookup goes through the copy node itself would load from `parentPath` (the package's real store
+     * directory), filtered by the declared range, and falls back to a name-only match only when nothing on
+     * disk resolves to a collected entry (a `link:` dep, whose entry is keyed by its `link:` version).
+     *
+     * A name-only lookup returns whichever version was collected first, which is wrong as soon as two
+     * versions of the package are installed: with the app pinning es5-ext@0.10.53 while its transitive
+     * d@1.0.2 needs es5-ext ^0.10.64, `d` was wired to 0.10.53 and the nested 0.10.64 copy (with its own
+     * esniff / event-emitter / next-tick@1.1.0 closure) vanished from the asar (#8493). pnpm 10.29.3+
+     * made this common, because its deduped output routes every repeated package through this recovery.
+     */
+    private resolveOmittedDependency;
     protected collectAllDependencies(_tree: PnpmDependency, _appPackageName: string): Promise<void>;
     private collectDepsRecursively;
     protected getTreeFromWorkspaces(tree: PnpmDependency, packageName: string): PnpmDependency;

package/out/node-module-collector/pnpmNodeModulesCollector.js

@@ -1,10 +1,13 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.PnpmNodeModulesCollector = void 0;
+const fs = require("fs-extra");
 const lazy_val_1 = require("lazy-val");
+const path = require("path");
 const moduleManager_1 = require("./moduleManager");
 const nodeModulesCollector_1 = require("./nodeModulesCollector");
 const packageManager_1 = require("./packageManager");
+const builder_util_1 = require("builder-util");
 class PnpmNodeModulesCollector extends nodeModulesCollector_1.NodeModulesCollector {
     constructor() {
         super(...arguments);
@@ -23,6 +26,58 @@ class PnpmNodeModulesCollector extends nodeModulesCollector_1.NodeModulesCollect
             const major = parseInt(((_a = result.stdout) !== null && _a !== void 0 ? _a : "0").split(".")[0], 10);
             return isNaN(major) ? 0 : major;
         });
+        /**
+         * Detect pnpm's installed layout from the on-disk structure rather than `pnpm config list`.
+         * pnpm 11 no longer echoes `node-linker` (from `.npmrc`) in `config list`, so the base-class
+         * config-parsing detection silently reports "not hoisted" for a hoisted install, which would
+         * disable the downward search needed to find version-conflicted nested deps.
+         *
+         * In the default isolated store every regular top-level package resolves — through a symlink
+         * on POSIX, a junction on Windows — into `node_modules/.pnpm/<name>@<ver>/node_modules/<name>`.
+         * In a hoisted layout the same package is a real directory directly under `node_modules`.
+         * `realpath` transparently follows both symlinks and junctions, so a layout is isolated iff
+         * *any* top-level package's real path routes through `.pnpm`. We scan rather than sample the
+         * first entry because `link:` packages resolve to their source (never under `.pnpm`) and could
+         * otherwise mask an isolated store.
+         */
+        this.isHoisted = new lazy_val_1.Lazy(async () => {
+            // A workspace package's own `node_modules` is often absent (or holds only its version
+            // conflicts) in a hoisted workspace, so fall back to the workspace root's `node_modules`.
+            let sawPackage = false;
+            for (const dir of await this.layoutRoots.value) {
+                const isolated = await this.scanNodeModulesLayout(path.join(dir, "node_modules"));
+                if (isolated != null) {
+                    if (isolated) {
+                        return false;
+                    }
+                    sawPackage = true;
+                }
+            }
+            // Packages exist and none route through `.pnpm` → hoisted. No packages → flat default.
+            return sawPackage;
+        });
+        /**
+         * The pnpm workspace root containing `rootDir` (nearest ancestor with `pnpm-workspace.yaml`, as pnpm
+         * itself resolves it), or null outside a workspace or when `rootDir` is the workspace root.
+         */
+        this.workspaceRoot = new lazy_val_1.Lazy(async () => {
+            let current = path.resolve(this.rootDir);
+            while (true) {
+                if (await (0, builder_util_1.exists)(path.join(current, "pnpm-workspace.yaml"))) {
+                    return current === path.resolve(this.rootDir) ? null : current;
+                }
+                const parent = path.dirname(current);
+                if (parent === current) {
+                    return null;
+                }
+                current = parent;
+            }
+        });
+        /** `rootDir`, then the workspace root when `rootDir` is a workspace package. */
+        this.layoutRoots = new lazy_val_1.Lazy(async () => {
+            const workspaceRoot = await this.workspaceRoot.value;
+            return workspaceRoot == null ? [this.rootDir] : [this.rootDir, workspaceRoot];
+        });
         /**
          * Memo for `locateFromDepOrRoot`, keyed by `name@version`. pnpm's content-addressed virtual
          * store guarantees that any given `name@version` resolves to a single location on disk, so
@@ -36,6 +91,33 @@ class PnpmNodeModulesCollector extends nodeModulesCollector_1.NodeModulesCollect
          * every shared subtree of the pnpm list output, exploding work in deep workspaces.
          */
         this.collectedDeps = new Set();
+        /** Reverse index of `allDependencies` keyed by package name (without version). Built once on
+         *  first access inside `extractProductionDependencyGraph`, after `allDependencies` is settled. */
+        this._allDepsByName = null;
+    }
+    /** Returns true if `nmDir` is an isolated (`.pnpm`) store, false if hoisted, null if it holds no packages. */
+    async scanNodeModulesLayout(nmDir) {
+        const entries = await fs.readdir(nmDir).catch(() => []);
+        let sawPackage = false;
+        for (const name of entries) {
+            if (name.startsWith(".")) {
+                continue; // .pnpm, .bin, .modules.yaml
+            }
+            const entryPath = path.join(nmDir, name);
+            // A scoped dir (@scope) is not a package itself; descend to its packages.
+            const candidates = name.startsWith("@") ? (await fs.readdir(entryPath).catch(() => [])).map(s => path.join(entryPath, s)) : [entryPath];
+            for (const candidate of candidates) {
+                const real = await fs.realpath(candidate).catch(() => null);
+                if (real == null) {
+                    continue;
+                }
+                sawPackage = true;
+                if (real.split(path.sep).includes(".pnpm")) {
+                    return true; // isolated store: a package routes through the virtual store
+                }
+            }
+        }
+        return sawPackage ? false : null;
     }
     /**
      * Returns the workspace packages to iterate over, gated by detected pnpm version:
@@ -51,6 +133,18 @@ class PnpmNodeModulesCollector extends nodeModulesCollector_1.NodeModulesCollect
     getArgs() {
         return ["list", "--prod", "--json", "--depth", "Infinity", "--silent", "--loglevel=error"];
     }
+    getAllDepsByName() {
+        if (!this._allDepsByName) {
+            this._allDepsByName = new Map();
+            for (const [id, dep] of this.allDependencies.entries()) {
+                const { name } = this.parseNameVersion(id);
+                if (!this._allDepsByName.has(name)) {
+                    this._allDepsByName.set(name, dep);
+                }
+            }
+        }
+        return this._allDepsByName;
+    }
     /**
      * Locate a package version, preferring the dep's own reported path before falling back to rootDir.
      * This is critical for pnpm non-hoisted (virtual store) setups where each package has its own
@@ -76,6 +170,27 @@ class PnpmNodeModulesCollector extends nodeModulesCollector_1.NodeModulesCollect
         // land at `<root>/node_modules/A/node_modules/B` — downward BFS is needed to find them.
         const skipDownwardSearch = !(await this.isHoisted.value);
         const promise = (async () => {
+            // Phase 1: find a version that SATISFIES requiredRange, trying the dep's own location
+            // first, then the workspace root. Crucially, neither pass accepts an out-of-range override
+            // here — so a wrong-version copy reachable via upward search from `parentPath` (e.g. a
+            // hoisted top-level dep) can't shadow the correct nested copy under root. With
+            // `nodeLinker: hoisted`, pnpm still reports virtual-store `path`s that don't exist on disk;
+            // an upward walk from one meets the root copy, which previously got accepted as an
+            // "override" before the root search (whose downward BFS finds the nested copy) ever ran.
+            //
+            // When `rootDir` is a workspace package, a hoisted install keeps the tree — including the
+            // nested `<workspaceRoot>/node_modules/A/node_modules/B` copies — under the workspace root,
+            // which the downward BFS from `rootDir` never reaches (its `node_modules` is often absent),
+            // so search the workspace root last.
+            let satisfying = parentPath ? await this.cache.locatePackageVersion({ pkgName, parentDir: parentPath, requiredRange, skipDownwardSearch, skipOverrideFallback: true }) : null;
+            for (const dir of await this.layoutRoots.value) {
+                satisfying !== null && satisfying !== void 0 ? satisfying : (satisfying = await this.cache.locatePackageVersion({ pkgName, parentDir: dir, requiredRange, skipDownwardSearch, skipOverrideFallback: true }));
+            }
+            if (satisfying) {
+                return satisfying;
+            }
+            // Phase 2: no version satisfies requiredRange (package-manager override, or no range
+            // given). Fall back to the original dep-then-root order, now allowing override versions.
             const fromDep = parentPath ? await this.cache.locatePackageVersion({ pkgName, parentDir: parentPath, requiredRange, skipDownwardSearch }) : null;
             if (fromDep) {
                 return fromDep;
@@ -113,6 +228,19 @@ class PnpmNodeModulesCollector extends nodeModulesCollector_1.NodeModulesCollect
         const all = packageJson ? { ...packageJson.dependencies, ...packageJson.optionalDependencies } : { ...tree.dependencies, ...tree.optionalDependencies };
         const optional = packageJson ? { ...packageJson.optionalDependencies } : {};
         const deps = { ...(tree.dependencies || {}), ...(tree.optionalDependencies || {}) };
+        // pnpm --prod omits sub-deps for link: packages (and synthetic entries derived from them), and pnpm
+        // 10.29.3+ prints a repeated subtree only once, so every later occurrence is a childless `deduped`
+        // stub (which is what `tree` is when the stub was the first occurrence collected). For any dep
+        // declared in the package.json (all) that pnpm left out of the tree, recover the resolved entry
+        // from allDependencies so it lands in the production graph.
+        for (const [depName, declaredRange] of Object.entries(all)) {
+            if (!deps[depName]) {
+                const dep = await this.resolveOmittedDependency(depName, declaredRange, tree.path);
+                if (dep && (0, builder_util_1.isValidKey)(depName)) {
+                    deps[depName] = dep;
+                }
+            }
+        }
         this.productionGraph[dependencyId] = { dependencies: [] };
         const depPromises = Object.entries(deps).map(async ([packageName, dependency]) => {
             // First check if it's in production dependencies
@@ -142,6 +270,24 @@ class PnpmNodeModulesCollector extends nodeModulesCollector_1.NodeModulesCollect
         }
         this.productionGraph[dependencyId] = { dependencies: collectedDependencies };
     }
+    /**
+     * Resolve a dependency that `pnpm list` left out of a package's tree to its `allDependencies` entry.
+     * The lookup goes through the copy node itself would load from `parentPath` (the package's real store
+     * directory), filtered by the declared range, and falls back to a name-only match only when nothing on
+     * disk resolves to a collected entry (a `link:` dep, whose entry is keyed by its `link:` version).
+     *
+     * A name-only lookup returns whichever version was collected first, which is wrong as soon as two
+     * versions of the package are installed: with the app pinning es5-ext@0.10.53 while its transitive
+     * d@1.0.2 needs es5-ext ^0.10.64, `d` was wired to 0.10.53 and the nested 0.10.64 copy (with its own
+     * esniff / event-emitter / next-tick@1.1.0 closure) vanished from the asar (#8493). pnpm 10.29.3+
+     * made this common, because its deduped output routes every repeated package through this recovery.
+     */
+    async resolveOmittedDependency(depName, declaredRange, parentPath) {
+        const range = typeof declaredRange === "string" ? declaredRange : undefined;
+        const located = await this.locateFromDepOrRoot(depName, parentPath, range);
+        const exact = located ? this.allDependencies.get(`${depName}@${located.packageJson.version}`) : undefined;
+        return exact !== null && exact !== void 0 ? exact : this.getAllDepsByName().get(depName);
+    }
     async collectAllDependencies(_tree, _appPackageName) {
         for (const root of this.allWorkspacePackages) {
             await this.collectDepsRecursively(root);

package/out/node-module-collector/pnpmNodeModulesCollector.js.map

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{ Lazy } from \"lazy-val\"\nimport { LogMessageByKey, type Package } from \"./moduleManager\"\nimport { NodeModulesCollector } from \"./nodeModulesCollector\"\nimport { getPackageManagerCommand, PM } from \"./packageManager\"\nimport { PnpmDependency } from \"./types\"\n\nexport class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmDependency, PnpmDependency> {\n  public readonly installOptions = {\n    manager: PM.PNPM,\n    lockfile: \"pnpm-lock.yaml\",\n  }\n\n  // Raw backing field — all entries from `pnpm list --json`\n  private _allWorkspacePackages: PnpmDependency[] = []\n  // Cached after parseDependenciesTree resolves the Lazy; 0 = safe default (treated as < v11)\n  private _pnpmMajorVersion = 0\n  // Runs `pnpm --version` once and caches the major version number\n  private readonly pnpmVersion = new Lazy<number>(async () => {\n    const result = await this.asyncExec(getPackageManagerCommand(PM.PNPM), [\"--version\"])\n    const major = parseInt((result.stdout ?? \"0\").split(\".\")[0], 10)\n    return isNaN(major) ? 0 : major\n  })\n\n  /**\n   * Memo for `locateFromDepOrRoot`, keyed by `name@version`. pnpm's content-addressed virtual\n   * store guarantees that any given `name@version` resolves to a single location on disk, so\n   * once we've resolved a package we can short-circuit every subsequent lookup. This is the\n   * dominant speedup for large workspaces where the `pnpm list --json` tree contains the same\n   * `name@version` thousands of times (one entry per dependent).\n   */\n  private readonly locateMemo: Map<string, Promise<Package | null>> = new Map()\n\n  /**\n   * Visited set for `collectDepsRecursively`, keyed by `name@version`. Without this we re-walk\n   * every shared subtree of the pnpm list output, exploding work in deep workspaces.\n   */\n  private readonly collectedDeps: Set<string> = new Set()\n\n  /**\n   * Returns the workspace packages to iterate over, gated by detected pnpm version:\n   * - pnpm v11+: multi-entry workspace output → return the full parsed array\n   * - pnpm < v11 / non-workspace / detection failure: single-tree behavior → return only [0]\n   */\n  private get allWorkspacePackages(): PnpmDependency[] {\n    if (this._pnpmMajorVersion >= 11) {\n      return this._allWorkspacePackages\n    }\n    return this._allWorkspacePackages.slice(0, 1)\n  }\n\n  protected getArgs(): string[] {\n    return [\"list\", \"--prod\", \"--json\", \"--depth\", \"Infinity\", \"--silent\", \"--loglevel=error\"]\n  }\n\n  /**\n   * Locate a package version, preferring the dep's own reported path before falling back to rootDir.\n   * This is critical for pnpm non-hoisted (virtual store) setups where each package has its own\n   * nested node_modules. Searching only from rootDir can resolve the wrong version when multiple\n   * versions of a dep exist in the workspace.\n   */\n  private async locateFromDepOrRoot(pkgName: string, parentPath: string | undefined, requiredRange?: string) {\n    // pnpm's virtual store is content-addressed: every `name@version` lookup is deterministic,\n    // so memoize on the exact version. `requiredRange` is normally an exact version coming from\n    // the pnpm list output (e.g. `value.version`), which makes this cache hit on duplicates.\n    // Only memoize when we have a concrete version — semver ranges could resolve differently\n    // depending on what's installed at `parentPath` vs root, so skip the cache for those.\n    const memoKey = requiredRange && /^\\d/.test(requiredRange) ? `${pkgName}@${requiredRange}` : null\n    if (memoKey != null) {\n      const cached = this.locateMemo.get(memoKey)\n      if (cached != null) {\n        return cached\n      }\n    }\n\n    // pnpm's default `.pnpm` virtual store is flat, so `downwardSearch` would burn thousands\n    // of `readdir`/`lstat` calls finding nothing. With `nodeLinker: hoisted`, however, the\n    // layout is a traditional nested `node_modules` tree where version-conflicted packages\n    // land at `<root>/node_modules/A/node_modules/B` — downward BFS is needed to find them.\n    const skipDownwardSearch = !(await this.isHoisted.value)\n    const promise = (async (): Promise<Package | null> => {\n      const fromDep = parentPath ? await this.cache.locatePackageVersion({ pkgName, parentDir: parentPath, requiredRange, skipDownwardSearch }) : null\n      if (fromDep) {\n        return fromDep\n      }\n      return this.cache.locatePackageVersion({ pkgName, parentDir: this.rootDir, requiredRange, skipDownwardSearch })\n    })()\n\n    if (memoKey != null) {\n      this.locateMemo.set(memoKey, promise)\n    }\n    return promise\n  }\n\n  // pnpm 10+ does not automatically preserve transitive optional platform-specific\n  // packages (e.g. sass-embedded-linux-x64) across lock file regeneration. Users\n  // must list them as direct optionalDependencies. Missing ones are emitted as\n  // PKG_OPTIONAL_PLATFORM_NOT_INSTALLED warnings in the log summary.\n  protected async extractProductionDependencyGraph(tree: PnpmDependency, dependencyId: string) {\n    if (this.productionGraph[dependencyId]) {\n      return\n    }\n    this.productionGraph[dependencyId] = { dependencies: [] }\n\n    if ((tree.dedupedDependenciesCount ?? 0) > 0) {\n      const realDep = this.allDependencies.get(dependencyId)\n      if (realDep) {\n        this.cache.logSummary[LogMessageByKey.PKG_DUPLICATE_REF].push(dependencyId)\n        tree = realDep\n      } else {\n        this.cache.logSummary[LogMessageByKey.PKG_DUPLICATE_REF_UNRESOLVED].push(dependencyId)\n        return\n      }\n    }\n\n    const packageName = tree.name || tree.from\n    const { packageJson } = (await this.locateFromDepOrRoot(packageName, tree.path, tree.version)) || {}\n\n    const all = packageJson ? { ...packageJson.dependencies, ...packageJson.optionalDependencies } : { ...tree.dependencies, ...tree.optionalDependencies }\n    const optional = packageJson ? { ...packageJson.optionalDependencies } : {}\n\n    const deps = { ...(tree.dependencies || {}), ...(tree.optionalDependencies || {}) }\n    this.productionGraph[dependencyId] = { dependencies: [] }\n    const depPromises = Object.entries(deps).map(async ([packageName, dependency]) => {\n      // First check if it's in production dependencies\n      if (!all[packageName]) {\n        return undefined\n      }\n\n      // Then check if optional dependency path exists (using actual resolved path)\n      if (optional[packageName]) {\n        const pkg = await this.locateFromDepOrRoot(packageName, tree.path, dependency.version)\n        if (!pkg) {\n          // Declared in `optionalDependencies`, so a miss is an expected condition (e.g. fsevents\n          // on Linux/Windows) — classify it as a missing optional dependency, not PKG_NOT_ON_DISK.\n          this.logMissingDependency(`${packageName}@${dependency.version}`, true)\n          return undefined\n        }\n      }\n      const { id: childDependencyId, pkgOverride } = this.normalizePackageVersion(packageName, dependency)\n      await this.extractProductionDependencyGraph(pkgOverride, childDependencyId)\n      return childDependencyId\n    })\n\n    const collectedDependencies: string[] = []\n    for (const dep of depPromises) {\n      const result = await dep\n      if (result !== undefined) {\n        collectedDependencies.push(result)\n      }\n    }\n    this.productionGraph[dependencyId] = { dependencies: collectedDependencies }\n  }\n\n  protected async collectAllDependencies(_tree: PnpmDependency, _appPackageName: string): Promise<void> {\n    for (const root of this.allWorkspacePackages) {\n      await this.collectDepsRecursively(root)\n    }\n  }\n\n  private async collectDepsRecursively(tree: PnpmDependency): Promise<void> {\n    const visit = async (key: string, value: PnpmDependency) => {\n      if ((value?.dedupedDependenciesCount ?? 0) > 0) {\n        return\n      }\n      const id = `${key}@${value.version}`\n      // The pnpm list output can include the same `name@version` thousands of times across a\n      // deep workspace; without this guard we re-resolve and re-recurse each occurrence.\n      if (this.collectedDeps.has(id)) {\n        return\n      }\n      this.collectedDeps.add(id)\n      const pkg = await this.locateFromDepOrRoot(key, value.path, value.version)\n      this.allDependencies.set(id, { ...value, path: pkg?.packageDir ?? value.path })\n      await this.collectDepsRecursively(value)\n    }\n\n    for (const [key, value] of Object.entries(tree.dependencies || {})) {\n      await visit(key, value)\n    }\n    for (const [key, value] of Object.entries(tree.optionalDependencies || {})) {\n      await visit(key, value)\n    }\n  }\n\n  protected override getTreeFromWorkspaces(tree: PnpmDependency, packageName: string): PnpmDependency {\n    // pnpm v10 workspace: app is nested as a dependency of root — handled by base class\n    const result = super.getTreeFromWorkspaces(tree, packageName)\n    if (result !== tree) {\n      return result\n    }\n    // pnpm v11 workspace: each workspace package is a separate top-level array entry;\n    // non-workspace (single-tree): find returns the one entry or undefined → falls back to tree\n    const match = this.allWorkspacePackages.find(pkg => pkg.name === packageName || pkg.from === packageName)\n    return match ?? tree\n  }\n\n  protected async parseDependenciesTree(jsonBlob: string): Promise<PnpmDependency> {\n    const dependencyTree = this.extractJsonFromPollutedOutput<PnpmDependency[]>(jsonBlob)\n    this._allWorkspacePackages = dependencyTree\n    this._pnpmMajorVersion = await this.pnpmVersion.value\n    return dependencyTree[0]\n  }\n}\n"]}
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* as fs from \"fs-extra\"\nimport { Lazy } from \"lazy-val\"\nimport * as path from \"path\"\nimport { LogMessageByKey, type Package } from \"./moduleManager\"\nimport { NodeModulesCollector } from \"./nodeModulesCollector\"\nimport { getPackageManagerCommand, PM } from \"./packageManager\"\nimport { PnpmDependency } from \"./types\"\nimport { exists, isValidKey } from \"builder-util\"\n\nexport class PnpmNodeModulesCollector extends NodeModulesCollector<PnpmDependency, PnpmDependency> {\n  public readonly installOptions = {\n    manager: PM.PNPM,\n    lockfile: \"pnpm-lock.yaml\",\n  }\n\n  // Raw backing field — all entries from `pnpm list --json`\n  private _allWorkspacePackages: PnpmDependency[] = []\n  // Cached after parseDependenciesTree resolves the Lazy; 0 = safe default (treated as < v11)\n  private _pnpmMajorVersion = 0\n  // Runs `pnpm --version` once and caches the major version number\n  private readonly pnpmVersion = new Lazy<number>(async () => {\n    const result = await this.asyncExec(getPackageManagerCommand(PM.PNPM), [\"--version\"])\n    const major = parseInt((result.stdout ?? \"0\").split(\".\")[0], 10)\n    return isNaN(major) ? 0 : major\n  })\n\n  /**\n   * Detect pnpm's installed layout from the on-disk structure rather than `pnpm config list`.\n   * pnpm 11 no longer echoes `node-linker` (from `.npmrc`) in `config list`, so the base-class\n   * config-parsing detection silently reports \"not hoisted\" for a hoisted install, which would\n   * disable the downward search needed to find version-conflicted nested deps.\n   *\n   * In the default isolated store every regular top-level package resolves — through a symlink\n   * on POSIX, a junction on Windows — into `node_modules/.pnpm/<name>@<ver>/node_modules/<name>`.\n   * In a hoisted layout the same package is a real directory directly under `node_modules`.\n   * `realpath` transparently follows both symlinks and junctions, so a layout is isolated iff\n   * *any* top-level package's real path routes through `.pnpm`. We scan rather than sample the\n   * first entry because `link:` packages resolve to their source (never under `.pnpm`) and could\n   * otherwise mask an isolated store.\n   */\n  protected override isHoisted = new Lazy<boolean>(async () => {\n    // A workspace package's own `node_modules` is often absent (or holds only its version\n    // conflicts) in a hoisted workspace, so fall back to the workspace root's `node_modules`.\n    let sawPackage = false\n    for (const dir of await this.layoutRoots.value) {\n      const isolated = await this.scanNodeModulesLayout(path.join(dir, \"node_modules\"))\n      if (isolated != null) {\n        if (isolated) {\n          return false\n        }\n        sawPackage = true\n      }\n    }\n    // Packages exist and none route through `.pnpm` → hoisted. No packages → flat default.\n    return sawPackage\n  })\n\n  /**\n   * The pnpm workspace root containing `rootDir` (nearest ancestor with `pnpm-workspace.yaml`, as pnpm\n   * itself resolves it), or null outside a workspace or when `rootDir` is the workspace root.\n   */\n  private readonly workspaceRoot = new Lazy<string | null>(async () => {\n    let current = path.resolve(this.rootDir)\n    while (true) {\n      if (await exists(path.join(current, \"pnpm-workspace.yaml\"))) {\n        return current === path.resolve(this.rootDir) ? null : current\n      }\n      const parent = path.dirname(current)\n      if (parent === current) {\n        return null\n      }\n      current = parent\n    }\n  })\n\n  /** `rootDir`, then the workspace root when `rootDir` is a workspace package. */\n  private readonly layoutRoots = new Lazy<string[]>(async () => {\n    const workspaceRoot = await this.workspaceRoot.value\n    return workspaceRoot == null ? [this.rootDir] : [this.rootDir, workspaceRoot]\n  })\n\n  /** Returns true if `nmDir` is an isolated (`.pnpm`) store, false if hoisted, null if it holds no packages. */\n  private async scanNodeModulesLayout(nmDir: string): Promise<boolean | null> {\n    const entries = await fs.readdir(nmDir).catch(() => [] as string[])\n    let sawPackage = false\n    for (const name of entries) {\n      if (name.startsWith(\".\")) {\n        continue // .pnpm, .bin, .modules.yaml\n      }\n      const entryPath = path.join(nmDir, name)\n      // A scoped dir (@scope) is not a package itself; descend to its packages.\n      const candidates = name.startsWith(\"@\") ? (await fs.readdir(entryPath).catch(() => [] as string[])).map(s => path.join(entryPath, s)) : [entryPath]\n      for (const candidate of candidates) {\n        const real = await fs.realpath(candidate).catch(() => null)\n        if (real == null) {\n          continue\n        }\n        sawPackage = true\n        if (real.split(path.sep).includes(\".pnpm\")) {\n          return true // isolated store: a package routes through the virtual store\n        }\n      }\n    }\n    return sawPackage ? false : null\n  }\n\n  /**\n   * Memo for `locateFromDepOrRoot`, keyed by `name@version`. pnpm's content-addressed virtual\n   * store guarantees that any given `name@version` resolves to a single location on disk, so\n   * once we've resolved a package we can short-circuit every subsequent lookup. This is the\n   * dominant speedup for large workspaces where the `pnpm list --json` tree contains the same\n   * `name@version` thousands of times (one entry per dependent).\n   */\n  private readonly locateMemo: Map<string, Promise<Package | null>> = new Map()\n\n  /**\n   * Visited set for `collectDepsRecursively`, keyed by `name@version`. Without this we re-walk\n   * every shared subtree of the pnpm list output, exploding work in deep workspaces.\n   */\n  private readonly collectedDeps: Set<string> = new Set()\n\n  /** Reverse index of `allDependencies` keyed by package name (without version). Built once on\n   *  first access inside `extractProductionDependencyGraph`, after `allDependencies` is settled. */\n  private _allDepsByName: Map<string, PnpmDependency> | null = null\n\n  /**\n   * Returns the workspace packages to iterate over, gated by detected pnpm version:\n   * - pnpm v11+: multi-entry workspace output → return the full parsed array\n   * - pnpm < v11 / non-workspace / detection failure: single-tree behavior → return only [0]\n   */\n  private get allWorkspacePackages(): PnpmDependency[] {\n    if (this._pnpmMajorVersion >= 11) {\n      return this._allWorkspacePackages\n    }\n    return this._allWorkspacePackages.slice(0, 1)\n  }\n\n  protected getArgs(): string[] {\n    return [\"list\", \"--prod\", \"--json\", \"--depth\", \"Infinity\", \"--silent\", \"--loglevel=error\"]\n  }\n\n  private getAllDepsByName(): Map<string, PnpmDependency> {\n    if (!this._allDepsByName) {\n      this._allDepsByName = new Map()\n      for (const [id, dep] of this.allDependencies.entries()) {\n        const { name } = this.parseNameVersion(id)\n        if (!this._allDepsByName.has(name)) {\n          this._allDepsByName.set(name, dep)\n        }\n      }\n    }\n    return this._allDepsByName\n  }\n\n  /**\n   * Locate a package version, preferring the dep's own reported path before falling back to rootDir.\n   * This is critical for pnpm non-hoisted (virtual store) setups where each package has its own\n   * nested node_modules. Searching only from rootDir can resolve the wrong version when multiple\n   * versions of a dep exist in the workspace.\n   */\n  private async locateFromDepOrRoot(pkgName: string, parentPath: string | undefined, requiredRange?: string) {\n    // pnpm's virtual store is content-addressed: every `name@version` lookup is deterministic,\n    // so memoize on the exact version. `requiredRange` is normally an exact version coming from\n    // the pnpm list output (e.g. `value.version`), which makes this cache hit on duplicates.\n    // Only memoize when we have a concrete version — semver ranges could resolve differently\n    // depending on what's installed at `parentPath` vs root, so skip the cache for those.\n    const memoKey = requiredRange && /^\\d/.test(requiredRange) ? `${pkgName}@${requiredRange}` : null\n    if (memoKey != null) {\n      const cached = this.locateMemo.get(memoKey)\n      if (cached != null) {\n        return cached\n      }\n    }\n\n    // pnpm's default `.pnpm` virtual store is flat, so `downwardSearch` would burn thousands\n    // of `readdir`/`lstat` calls finding nothing. With `nodeLinker: hoisted`, however, the\n    // layout is a traditional nested `node_modules` tree where version-conflicted packages\n    // land at `<root>/node_modules/A/node_modules/B` — downward BFS is needed to find them.\n    const skipDownwardSearch = !(await this.isHoisted.value)\n    const promise = (async (): Promise<Package | null> => {\n      // Phase 1: find a version that SATISFIES requiredRange, trying the dep's own location\n      // first, then the workspace root. Crucially, neither pass accepts an out-of-range override\n      // here — so a wrong-version copy reachable via upward search from `parentPath` (e.g. a\n      // hoisted top-level dep) can't shadow the correct nested copy under root. With\n      // `nodeLinker: hoisted`, pnpm still reports virtual-store `path`s that don't exist on disk;\n      // an upward walk from one meets the root copy, which previously got accepted as an\n      // \"override\" before the root search (whose downward BFS finds the nested copy) ever ran.\n      //\n      // When `rootDir` is a workspace package, a hoisted install keeps the tree — including the\n      // nested `<workspaceRoot>/node_modules/A/node_modules/B` copies — under the workspace root,\n      // which the downward BFS from `rootDir` never reaches (its `node_modules` is often absent),\n      // so search the workspace root last.\n      let satisfying = parentPath ? await this.cache.locatePackageVersion({ pkgName, parentDir: parentPath, requiredRange, skipDownwardSearch, skipOverrideFallback: true }) : null\n      for (const dir of await this.layoutRoots.value) {\n        satisfying ??= await this.cache.locatePackageVersion({ pkgName, parentDir: dir, requiredRange, skipDownwardSearch, skipOverrideFallback: true })\n      }\n      if (satisfying) {\n        return satisfying\n      }\n      // Phase 2: no version satisfies requiredRange (package-manager override, or no range\n      // given). Fall back to the original dep-then-root order, now allowing override versions.\n      const fromDep = parentPath ? await this.cache.locatePackageVersion({ pkgName, parentDir: parentPath, requiredRange, skipDownwardSearch }) : null\n      if (fromDep) {\n        return fromDep\n      }\n      return this.cache.locatePackageVersion({ pkgName, parentDir: this.rootDir, requiredRange, skipDownwardSearch })\n    })()\n\n    if (memoKey != null) {\n      this.locateMemo.set(memoKey, promise)\n    }\n    return promise\n  }\n\n  // pnpm 10+ does not automatically preserve transitive optional platform-specific\n  // packages (e.g. sass-embedded-linux-x64) across lock file regeneration. Users\n  // must list them as direct optionalDependencies. Missing ones are emitted as\n  // PKG_OPTIONAL_PLATFORM_NOT_INSTALLED warnings in the log summary.\n  protected async extractProductionDependencyGraph(tree: PnpmDependency, dependencyId: string) {\n    if (this.productionGraph[dependencyId]) {\n      return\n    }\n    this.productionGraph[dependencyId] = { dependencies: [] }\n\n    if ((tree.dedupedDependenciesCount ?? 0) > 0) {\n      const realDep = this.allDependencies.get(dependencyId)\n      if (realDep) {\n        this.cache.logSummary[LogMessageByKey.PKG_DUPLICATE_REF].push(dependencyId)\n        tree = realDep\n      } else {\n        this.cache.logSummary[LogMessageByKey.PKG_DUPLICATE_REF_UNRESOLVED].push(dependencyId)\n        return\n      }\n    }\n\n    const packageName = tree.name || tree.from\n    const { packageJson } = (await this.locateFromDepOrRoot(packageName, tree.path, tree.version)) || {}\n\n    const all = packageJson ? { ...packageJson.dependencies, ...packageJson.optionalDependencies } : { ...tree.dependencies, ...tree.optionalDependencies }\n    const optional = packageJson ? { ...packageJson.optionalDependencies } : {}\n\n    const deps: Record<string, PnpmDependency> = { ...(tree.dependencies || {}), ...(tree.optionalDependencies || {}) }\n\n    // pnpm --prod omits sub-deps for link: packages (and synthetic entries derived from them), and pnpm\n    // 10.29.3+ prints a repeated subtree only once, so every later occurrence is a childless `deduped`\n    // stub (which is what `tree` is when the stub was the first occurrence collected). For any dep\n    // declared in the package.json (all) that pnpm left out of the tree, recover the resolved entry\n    // from allDependencies so it lands in the production graph.\n    for (const [depName, declaredRange] of Object.entries(all)) {\n      if (!deps[depName]) {\n        const dep = await this.resolveOmittedDependency(depName, declaredRange, tree.path)\n        if (dep && isValidKey(depName)) {\n          deps[depName] = dep\n        }\n      }\n    }\n\n    this.productionGraph[dependencyId] = { dependencies: [] }\n    const depPromises = Object.entries(deps).map(async ([packageName, dependency]) => {\n      // First check if it's in production dependencies\n      if (!all[packageName]) {\n        return undefined\n      }\n\n      // Then check if optional dependency path exists (using actual resolved path)\n      if (optional[packageName]) {\n        const pkg = await this.locateFromDepOrRoot(packageName, tree.path, dependency.version)\n        if (!pkg) {\n          // Declared in `optionalDependencies`, so a miss is an expected condition (e.g. fsevents\n          // on Linux/Windows) — classify it as a missing optional dependency, not PKG_NOT_ON_DISK.\n          this.logMissingDependency(`${packageName}@${dependency.version}`, true)\n          return undefined\n        }\n      }\n      const { id: childDependencyId, pkgOverride } = this.normalizePackageVersion(packageName, dependency)\n      await this.extractProductionDependencyGraph(pkgOverride, childDependencyId)\n      return childDependencyId\n    })\n\n    const collectedDependencies: string[] = []\n    for (const dep of depPromises) {\n      const result = await dep\n      if (result !== undefined) {\n        collectedDependencies.push(result)\n      }\n    }\n    this.productionGraph[dependencyId] = { dependencies: collectedDependencies }\n  }\n\n  /**\n   * Resolve a dependency that `pnpm list` left out of a package's tree to its `allDependencies` entry.\n   * The lookup goes through the copy node itself would load from `parentPath` (the package's real store\n   * directory), filtered by the declared range, and falls back to a name-only match only when nothing on\n   * disk resolves to a collected entry (a `link:` dep, whose entry is keyed by its `link:` version).\n   *\n   * A name-only lookup returns whichever version was collected first, which is wrong as soon as two\n   * versions of the package are installed: with the app pinning es5-ext@0.10.53 while its transitive\n   * d@1.0.2 needs es5-ext ^0.10.64, `d` was wired to 0.10.53 and the nested 0.10.64 copy (with its own\n   * esniff / event-emitter / next-tick@1.1.0 closure) vanished from the asar (#8493). pnpm 10.29.3+\n   * made this common, because its deduped output routes every repeated package through this recovery.\n   */\n  private async resolveOmittedDependency(depName: string, declaredRange: unknown, parentPath: string | undefined): Promise<PnpmDependency | undefined> {\n    const range = typeof declaredRange === \"string\" ? declaredRange : undefined\n    const located = await this.locateFromDepOrRoot(depName, parentPath, range)\n    const exact = located ? this.allDependencies.get(`${depName}@${located.packageJson.version}`) : undefined\n    return exact ?? this.getAllDepsByName().get(depName)\n  }\n\n  protected async collectAllDependencies(_tree: PnpmDependency, _appPackageName: string): Promise<void> {\n    for (const root of this.allWorkspacePackages) {\n      await this.collectDepsRecursively(root)\n    }\n  }\n\n  private async collectDepsRecursively(tree: PnpmDependency): Promise<void> {\n    const visit = async (key: string, value: PnpmDependency) => {\n      if ((value?.dedupedDependenciesCount ?? 0) > 0) {\n        return\n      }\n      const id = `${key}@${value.version}`\n      // The pnpm list output can include the same `name@version` thousands of times across a\n      // deep workspace; without this guard we re-resolve and re-recurse each occurrence.\n      if (this.collectedDeps.has(id)) {\n        return\n      }\n      this.collectedDeps.add(id)\n      const pkg = await this.locateFromDepOrRoot(key, value.path, value.version)\n      this.allDependencies.set(id, { ...value, path: pkg?.packageDir ?? value.path })\n      await this.collectDepsRecursively(value)\n    }\n\n    for (const [key, value] of Object.entries(tree.dependencies || {})) {\n      await visit(key, value)\n    }\n    for (const [key, value] of Object.entries(tree.optionalDependencies || {})) {\n      await visit(key, value)\n    }\n  }\n\n  protected override getTreeFromWorkspaces(tree: PnpmDependency, packageName: string): PnpmDependency {\n    // pnpm v10 workspace: app is nested as a dependency of root — handled by base class\n    const result = super.getTreeFromWorkspaces(tree, packageName)\n    if (result !== tree) {\n      return result\n    }\n    // pnpm v11 workspace: each workspace package is a separate top-level array entry;\n    // non-workspace (single-tree): find returns the one entry or undefined → falls back to tree\n    const match = this.allWorkspacePackages.find(pkg => pkg.name === packageName || pkg.from === packageName)\n    return match ?? tree\n  }\n\n  protected async parseDependenciesTree(jsonBlob: string): Promise<PnpmDependency> {\n    const dependencyTree = this.extractJsonFromPollutedOutput<PnpmDependency[]>(jsonBlob)\n    this._allWorkspacePackages = dependencyTree\n    this._pnpmMajorVersion = await this.pnpmVersion.value\n    return dependencyTree[0]\n  }\n}\n"]}

package/out/packager.d.ts

@@ -49,6 +49,8 @@ export declare class Packager {
     _appInfo: AppInfo | null;
     get appInfo(): AppInfo;
     readonly tempDirManager: TmpDir;
+    private readonly buildFinalizeTasks;
+    addBuildFinalizeTask(task: () => Promise<void>): void;
     private _repositoryInfo;
     readonly options: PackagerOptions;
     readonly debugLogger: DebugLogger;

package/out/packager.js

@@ -83,6 +83,9 @@ class Packager {
     get appInfo() {
         return this._appInfo;
     }
+    addBuildFinalizeTask(task) {
+        this.buildFinalizeTasks.push(task);
+    }
     get repositoryInfo() {
         return this._repositoryInfo.value;
     }
@@ -118,6 +121,10 @@ class Packager {
         this.eventEmitter = new asyncEventEmitter_1.AsyncEventEmitter();
         this._appInfo = null;
         this.tempDirManager = new builder_util_1.TmpDir("packager");
+        // Tasks that must run after EVERY target has finished building — the only point at which the
+        // shared appOutDir can be mutated without racing a concurrent target that reads it. Used by NSIS
+        // to write elevate.exe into win-unpacked without it leaking into Squirrel/zip/etc. (see #9852).
+        this.buildFinalizeTasks = [];
         this._repositoryInfo = new lazy_val_1.Lazy(() => (0, repositoryInfo_1.getRepositoryInfo)(this.projectDir, this.metadata, this.devMetadata));
         this.debugLogger = new builder_util_1.DebugLogger(builder_util_1.log.isDebugEnabled);
         this.runtimeEnvironmentVariables = {};
@@ -421,6 +428,14 @@ class Packager {
             }
             await target.finishBuild();
         }
+        // Every target has now finished reading the shared appOutDir(s), so finalize tasks may safely
+        // mutate them (e.g. NSIS copying elevate.exe into win-unpacked — see #9852).
+        for (const task of this.buildFinalizeTasks) {
+            if (this.cancellationToken.cancelled) {
+                break;
+            }
+            await task();
+        }
         return platformToTarget;
     }
     async createHelper(platform) {