anymous 1.0.0

package/src/tool/apply_patch.ts

@@ -0,0 +1,313 @@
+import * as path from "path"
+import { Effect, Schema } from "effect"
+import * as Tool from "./tool"
+import { EventV2Bridge } from "@/event-v2-bridge"
+import { Watcher } from "@opencode-ai/core/filesystem/watcher"
+import { InstanceState } from "@/effect/instance-state"
+import { Patch } from "../patch"
+import { createTwoFilesPatch, diffLines } from "diff"
+import { assertExternalDirectoryEffect } from "./external-directory"
+import { trimDiff } from "./edit"
+import { LSP } from "@/lsp/lsp"
+import { FSUtil } from "@opencode-ai/core/fs-util"
+import DESCRIPTION from "./apply_patch.txt"
+import { FileSystem } from "@opencode-ai/core/filesystem"
+import { Format } from "../format"
+import * as Bom from "@/util/bom"
+
+export const Parameters = Schema.Struct({
+  patchText: Schema.String.annotate({ description: "The full patch text that describes all changes to be made" }),
+})
+
+export const ApplyPatchTool = Tool.define(
+  "apply_patch",
+  Effect.gen(function* () {
+    const lsp = yield* LSP.Service
+    const afs = yield* FSUtil.Service
+    const format = yield* Format.Service
+    const events = yield* EventV2Bridge.Service
+
+    const run = Effect.fn("ApplyPatchTool.execute")(function* (
+      params: Schema.Schema.Type<typeof Parameters>,
+      ctx: Tool.Context,
+    ) {
+      if (!params.patchText) {
+        return yield* Effect.fail(new Error("patchText is required"))
+      }
+
+      // Parse the patch to get hunks
+      let hunks: Patch.Hunk[]
+      try {
+        const parseResult = Patch.parsePatch(params.patchText)
+        hunks = parseResult.hunks
+      } catch (error) {
+        return yield* Effect.fail(new Error(`apply_patch verification failed: ${error}`))
+      }
+
+      if (hunks.length === 0) {
+        const normalized = params.patchText.replace(/\r\n/g, "\n").replace(/\r/g, "\n").trim()
+        if (normalized === "*** Begin Patch\n*** End Patch") {
+          return yield* Effect.fail(new Error("patch rejected: empty patch"))
+        }
+        return yield* Effect.fail(new Error("apply_patch verification failed: no hunks found"))
+      }
+
+      const instance = yield* InstanceState.context
+
+      // Validate file paths and check permissions
+      const fileChanges: Array<{
+        filePath: string
+        oldContent: string
+        newContent: string
+        type: "add" | "update" | "delete" | "move"
+        movePath?: string
+        diff: string
+        additions: number
+        deletions: number
+        bom: boolean
+      }> = []
+
+      let totalDiff = ""
+
+      for (const hunk of hunks) {
+        const filePath = path.resolve(instance.directory, hunk.path)
+        yield* assertExternalDirectoryEffect(ctx, filePath)
+
+        switch (hunk.type) {
+          case "add": {
+            const oldContent = ""
+            const newContent =
+              hunk.contents.length === 0 || hunk.contents.endsWith("\n") ? hunk.contents : `${hunk.contents}\n`
+            const next = Bom.split(newContent)
+            const diff = trimDiff(createTwoFilesPatch(filePath, filePath, oldContent, next.text))
+
+            let additions = 0
+            let deletions = 0
+            for (const change of diffLines(oldContent, next.text)) {
+              if (change.added) additions += change.count || 0
+              if (change.removed) deletions += change.count || 0
+            }
+
+            fileChanges.push({
+              filePath,
+              oldContent,
+              newContent: next.text,
+              type: "add",
+              diff,
+              additions,
+              deletions,
+              bom: next.bom,
+            })
+
+            totalDiff += diff + "\n"
+            break
+          }
+
+          case "update": {
+            // Check if file exists for update
+            const stats = yield* afs.stat(filePath).pipe(Effect.catch(() => Effect.succeed(undefined)))
+            if (!stats || stats.type === "Directory") {
+              return yield* Effect.fail(
+                new Error(`apply_patch verification failed: Failed to read file to update: ${filePath}`),
+              )
+            }
+
+            const source = yield* Bom.readFile(afs, filePath)
+            const oldContent = source.text
+            let newContent = oldContent
+            let bom = source.bom
+
+            // Apply the update chunks to get new content
+            try {
+              const fileUpdate = Patch.deriveNewContentsFromChunks(
+                filePath,
+                hunk.chunks,
+                Bom.join(source.text, source.bom),
+              )
+              newContent = fileUpdate.content
+              bom = fileUpdate.bom
+            } catch (error) {
+              return yield* Effect.fail(new Error(`apply_patch verification failed: ${error}`))
+            }
+
+            const diff = trimDiff(createTwoFilesPatch(filePath, filePath, oldContent, newContent))
+
+            let additions = 0
+            let deletions = 0
+            for (const change of diffLines(oldContent, newContent)) {
+              if (change.added) additions += change.count || 0
+              if (change.removed) deletions += change.count || 0
+            }
+
+            const movePath = hunk.move_path ? path.resolve(instance.directory, hunk.move_path) : undefined
+            yield* assertExternalDirectoryEffect(ctx, movePath)
+
+            fileChanges.push({
+              filePath,
+              oldContent,
+              newContent,
+              type: hunk.move_path ? "move" : "update",
+              movePath,
+              diff,
+              additions,
+              deletions,
+              bom,
+            })
+
+            totalDiff += diff + "\n"
+            break
+          }
+
+          case "delete": {
+            const source = yield* Bom.readFile(afs, filePath).pipe(
+              Effect.catch((error) =>
+                Effect.fail(
+                  new Error(
+                    `apply_patch verification failed: ${error instanceof Error ? error.message : String(error)}`,
+                  ),
+                ),
+              ),
+            )
+            const contentToDelete = source.text
+            const deleteDiff = trimDiff(createTwoFilesPatch(filePath, filePath, contentToDelete, ""))
+
+            const deletions = contentToDelete.split("\n").length
+
+            fileChanges.push({
+              filePath,
+              oldContent: contentToDelete,
+              newContent: "",
+              type: "delete",
+              diff: deleteDiff,
+              additions: 0,
+              deletions,
+              bom: source.bom,
+            })
+
+            totalDiff += deleteDiff + "\n"
+            break
+          }
+        }
+      }
+
+      // Build per-file metadata for UI rendering (used for both permission and result)
+      const files = fileChanges.map((change) => ({
+        filePath: change.filePath,
+        relativePath: path.relative(instance.worktree, change.movePath ?? change.filePath).replaceAll("\\", "/"),
+        type: change.type,
+        patch: change.diff,
+        additions: change.additions,
+        deletions: change.deletions,
+        movePath: change.movePath,
+      }))
+
+      // Check permissions if needed
+      const relativePaths = fileChanges.map((c) => path.relative(instance.worktree, c.filePath).replaceAll("\\", "/"))
+      yield* ctx.ask({
+        permission: "edit",
+        patterns: relativePaths,
+        always: ["*"],
+        metadata: {
+          filepath: relativePaths.join(", "),
+          diff: totalDiff,
+          files,
+        },
+      })
+
+      // Apply the changes
+      const updates: Array<{ file: string; event: "add" | "change" | "unlink" }> = []
+
+      for (const change of fileChanges) {
+        const edited = change.type === "delete" ? undefined : (change.movePath ?? change.filePath)
+        switch (change.type) {
+          case "add":
+            // Create parent directories (recursive: true is safe on existing/root dirs)
+
+            yield* afs.writeWithDirs(change.filePath, Bom.join(change.newContent, change.bom))
+            updates.push({ file: change.filePath, event: "add" })
+            break
+
+          case "update":
+            yield* afs.writeWithDirs(change.filePath, Bom.join(change.newContent, change.bom))
+            updates.push({ file: change.filePath, event: "change" })
+            break
+
+          case "move":
+            if (change.movePath) {
+              // Create parent directories (recursive: true is safe on existing/root dirs)
+
+              yield* afs.writeWithDirs(change.movePath!, Bom.join(change.newContent, change.bom))
+              yield* afs.remove(change.filePath)
+              updates.push({ file: change.filePath, event: "unlink" })
+              updates.push({ file: change.movePath, event: "add" })
+            }
+            break
+
+          case "delete":
+            yield* afs.remove(change.filePath)
+            updates.push({ file: change.filePath, event: "unlink" })
+            break
+        }
+
+        if (edited) {
+          if (yield* format.file(edited)) {
+            yield* Bom.syncFile(afs, edited, change.bom)
+          }
+          yield* events.publish(FileSystem.Event.Edited, { file: edited })
+        }
+      }
+
+      // Publish file change events
+      for (const update of updates) {
+        yield* events.publish(Watcher.Event.Updated, update)
+      }
+
+      // Notify LSP of file changes and collect diagnostics
+      for (const change of fileChanges) {
+        if (change.type === "delete") continue
+        const target = change.movePath ?? change.filePath
+        yield* lsp.touchFile(target, "document")
+      }
+      const diagnostics = yield* lsp.diagnostics()
+
+      // Generate output summary
+      const summaryLines = fileChanges.map((change) => {
+        if (change.type === "add") {
+          return `A ${path.relative(instance.worktree, change.filePath).replaceAll("\\", "/")}`
+        }
+        if (change.type === "delete") {
+          return `D ${path.relative(instance.worktree, change.filePath).replaceAll("\\", "/")}`
+        }
+        const target = change.movePath ?? change.filePath
+        return `M ${path.relative(instance.worktree, target).replaceAll("\\", "/")}`
+      })
+      let output = `Success. Updated the following files:\n${summaryLines.join("\n")}`
+
+      for (const change of fileChanges) {
+        if (change.type === "delete") continue
+        const target = change.movePath ?? change.filePath
+        const block = LSP.Diagnostic.report(target, diagnostics[FSUtil.normalizePath(target)] ?? [])
+        if (!block) continue
+        const rel = path.relative(instance.worktree, target).replaceAll("\\", "/")
+        output += `\n\nLSP errors detected in ${rel}, please fix:\n${block}`
+      }
+
+      return {
+        title: output,
+        metadata: {
+          diff: totalDiff,
+          files,
+          diagnostics,
+        },
+        output,
+      }
+    })
+
+    return {
+      description: DESCRIPTION,
+      parameters: Parameters,
+      execute: (params: Schema.Schema.Type<typeof Parameters>, ctx: Tool.Context) =>
+        run(params, ctx).pipe(Effect.orDie),
+    }
+  }),
+)

package/src/tool/apply_patch.txt

@@ -0,0 +1,33 @@
+Use the `apply_patch` tool to edit files. Your patch language is a stripped‑down, file‑oriented diff format designed to be easy to parse and safe to apply. You can think of it as a high‑level envelope:
+
+*** Begin Patch
+[ one or more file sections ]
+*** End Patch
+
+Within that envelope, you get a sequence of file operations.
+You MUST include a header to specify the action you are taking.
+Each operation starts with one of three headers:
+
+*** Add File: <path> - create a new file. Every following line is a + line (the initial contents).
+*** Delete File: <path> - remove an existing file. Nothing follows.
+*** Update File: <path> - patch an existing file in place (optionally with a rename).
+
+Example patch:
+
+```
+*** Begin Patch
+*** Add File: hello.txt
++Hello world
+*** Update File: src/app.py
+*** Move to: src/main.py
+@@ def greet():
+-print("Hi")
++print("Hello, world!")
+*** Delete File: obsolete.txt
+*** End Patch
+```
+
+It is important to remember:
+
+- You must include a header with your intended action (Add/Delete/Update)
+- You must prefix new lines with `+` even when creating a new file

package/src/tool/code-mode.ts

@@ -0,0 +1,310 @@
+import * as Tool from "./tool"
+import { CallToolResultSchema, type CallToolResult } from "@modelcontextprotocol/sdk/types.js"
+import { Cause, Effect, Schema } from "effect"
+import { CodeMode, Tool as SandboxTool, toolError } from "@opencode-ai/codemode"
+import { MCP } from "@/mcp"
+import { McpCatalog } from "@/mcp/catalog"
+import { Agent } from "@/agent/agent"
+import { Session } from "@/session/session"
+import { Permission } from "@/permission"
+import { Plugin } from "@/plugin"
+
+export const CODE_MODE_TOOL = "execute"
+
+const DESCRIPTION = "Run a confined orchestration script with access to connected MCP tools."
+
+export const Parameters = Schema.Struct({
+  code: Schema.String.annotate({
+    description: "Script body executed by the confined interpreter.",
+  }),
+})
+
+type CallEntry = { tool: string; status: "running" | "completed" | "error"; input?: Record<string, unknown> }
+
+type Metadata = {
+  toolCalls: CallEntry[]
+  error?: boolean
+}
+
+type Attachment = NonNullable<Tool.ExecuteResult["attachments"]>[number]
+
+type CatalogEntry = {
+  path: string
+  key: string
+  server: string
+  local: string
+  tool: MCP.McpTool
+}
+
+function groupByServer(mcpTools: Record<string, MCP.McpTool>, servers: readonly string[]): Map<string, CatalogEntry[]> {
+  const byLongest = [...servers].sort((a, b) => b.length - a.length)
+  const groups = new Map<string, CatalogEntry[]>()
+  for (const key of Object.keys(mcpTools).sort((a, b) => a.localeCompare(b))) {
+    const server =
+      byLongest.find((name) => key.startsWith(name + "_")) ?? (key.includes("_") ? key.slice(0, key.indexOf("_")) : key)
+    const local = server && key.startsWith(server + "_") ? key.slice(server.length + 1) : key
+    const entry: CatalogEntry = {
+      path: `${server}.${local}`,
+      key,
+      server,
+      local,
+      tool: mcpTools[key]!,
+    }
+    groups.set(server, [...(groups.get(server) ?? []), entry])
+  }
+  return groups
+}
+
+export function describeCatalog(mcpTools: Record<string, MCP.McpTool>, servers: readonly string[]): string {
+  return CodeMode.make({
+    tools: toolTree(
+      [...groupByServer(mcpTools, servers).values()].flat(),
+      () => () => Effect.fail(toolError("Tool preview is not executable.")),
+    ),
+  }).instructions()
+}
+
+const lastSegment = (uri: string) => {
+  const trimmed = uri.split(/[?#]/, 1)[0]!.replace(/\/+$/, "")
+  const segment = trimmed.slice(trimmed.lastIndexOf("/") + 1)
+  return segment.length > 0 ? segment : undefined
+}
+
+const dataUrl = (mime: string, base64: string) => `data:${mime};base64,${base64}`
+
+function projectMcpResult(result: CallToolResult, collect: (attachment: Attachment) => void): unknown {
+  const text: string[] = []
+  let files = 0
+  let images = 0
+  const push = (attachment: Attachment) => {
+    files += 1
+    if (attachment.mime.startsWith("image/")) images += 1
+    collect(attachment)
+  }
+  for (const block of result.content) {
+    switch (block.type) {
+      case "text":
+        text.push(block.text)
+        break
+      case "image":
+      case "audio":
+        push({ type: "file", mime: block.mimeType, url: dataUrl(block.mimeType, block.data) })
+        break
+      case "resource": {
+        if ("text" in block.resource) {
+          text.push(block.resource.text)
+          break
+        }
+        const mime = block.resource.mimeType ?? "application/octet-stream"
+        push({ type: "file", mime, url: dataUrl(mime, block.resource.blob), filename: lastSegment(block.resource.uri) })
+        break
+      }
+      case "resource_link":
+        // A link is a reference, not fetchable media; hand it to the program instead of the attachment channel.
+        text.push(`${block.name}: ${block.uri}`)
+        break
+    }
+  }
+
+  if (result.structuredContent !== undefined && result.structuredContent !== null) return result.structuredContent
+  if (text.length > 0) return text.join("\n")
+  if (files > 0) {
+    const noun = files === images ? "image" : "file"
+    return `[${files} ${noun}${files === 1 ? "" : "s"} attached to the result]`
+  }
+  return null
+}
+
+type Run = (input: unknown) => Effect.Effect<unknown, unknown>
+
+function toolTree(catalog: readonly CatalogEntry[], run: (entry: CatalogEntry) => Run) {
+  const tree: Record<string, Record<string, SandboxTool.Definition>> = {}
+  for (const entry of catalog) {
+    const namespace = (tree[entry.server] ??= {})
+    namespace[entry.local] = SandboxTool.make({
+      description: entry.tool.def.description ?? "",
+      input: entry.tool.def.inputSchema as SandboxTool.JsonSchema,
+      output: entry.tool.def.outputSchema as SandboxTool.JsonSchema | undefined,
+      run: run(entry),
+    })
+  }
+  return tree
+}
+
+const invokeChildTool = Effect.fn("CodeMode.invokeChildTool")(function* (input: {
+  plugin: Plugin.Interface
+  entry: CatalogEntry
+  args: Record<string, unknown>
+  callID: string
+  ctx: Tool.Context
+}) {
+  yield* input.plugin.trigger(
+    "tool.execute.before",
+    { tool: input.entry.key, sessionID: input.ctx.sessionID, callID: input.callID },
+    { args: input.args },
+  )
+  const result: CallToolResult = yield* Effect.gen(function* () {
+    yield* input.ctx.ask({ permission: input.entry.key, metadata: {}, patterns: ["*"], always: ["*"] })
+    // Deliberately mirrors McpCatalog.convertTool's transport call so the MCP service stays free of tool-loop concerns.
+    return yield* Effect.promise(async () => {
+      const raw = await input.entry.tool.client.callTool(
+        { name: input.entry.tool.def.name, arguments: input.args },
+        CallToolResultSchema,
+        {
+          resetTimeoutOnProgress: true,
+          signal: input.ctx.abort,
+          timeout: input.entry.tool.timeout,
+          // The MCP SDK only sends a progress token when this hook is present, enabling timeout resets.
+          onprogress: () => {},
+        },
+      )
+      if (raw.isError)
+        throw new Error(
+          raw.content
+            .flatMap((item) => (item.type === "text" ? [item.text] : []))
+            .filter((text) => text.trim())
+            .join("\n\n") || "MCP tool returned an error",
+        )
+      return raw
+    })
+  }).pipe(
+    Effect.withSpan("Tool.execute", {
+      attributes: {
+        "tool.name": input.entry.key,
+        "tool.call_id": input.callID,
+        "session.id": input.ctx.sessionID,
+        "message.id": input.ctx.messageID,
+      },
+    }),
+  )
+  yield* input.plugin.trigger(
+    "tool.execute.after",
+    { tool: input.entry.key, sessionID: input.ctx.sessionID, callID: input.callID, args: input.args },
+    result,
+  )
+  return result
+})
+
+export const CodeModeTool = Tool.define(
+  CODE_MODE_TOOL,
+  Effect.gen(function* () {
+    const mcp = yield* MCP.Service
+    const agents = yield* Agent.Service
+    const sessions = yield* Session.Service
+    const plugin = yield* Plugin.Service
+
+    const init: Tool.DefWithoutID<typeof Parameters, Metadata> = {
+      description: DESCRIPTION,
+      parameters: Parameters,
+      execute: Effect.fn("CodeMode.execute")(function* (params, ctx) {
+        if (ctx.abort.aborted) {
+          return {
+            title: CODE_MODE_TOOL,
+            metadata: { toolCalls: [], error: true },
+            output: "Execution cancelled.",
+          } satisfies Tool.ExecuteResult<Metadata>
+        }
+        const agent = yield* agents.get(ctx.agent)
+        const session = yield* sessions.get(ctx.sessionID).pipe(Effect.orDie)
+        const ruleset = Permission.merge(agent.permission, session.permission ?? [])
+        const mcpTools = Permission.visibleTools(yield* mcp.tools(), ruleset)
+        const servers = Object.keys(yield* mcp.clients()).map(McpCatalog.sanitize)
+        const catalog = [...groupByServer(mcpTools, servers).values()].flat()
+
+        const calls: CallEntry[] = []
+        const attachments: Attachment[] = []
+        const publish = () =>
+          ctx.metadata({ title: CODE_MODE_TOOL, metadata: { toolCalls: calls.map((c) => ({ ...c })) } })
+
+        let childCalls = 0
+        const callTool = (entry: CatalogEntry) => (input: unknown) =>
+          Effect.gen(function* () {
+            childCalls += 1
+            const result = yield* invokeChildTool({
+              plugin,
+              entry,
+              args: (input ?? {}) as Record<string, unknown>,
+              callID: `${ctx.callID ?? entry.key}/${childCalls}`,
+              ctx,
+            })
+            return projectMcpResult(result, (attachment: Attachment) => void attachments.push(attachment))
+          }).pipe(
+            Effect.catchCause((cause) => {
+              if (Cause.hasInterruptsOnly(cause)) return Effect.interrupt
+              const error = Cause.squash(cause)
+              return Effect.fail(toolError(error instanceof Error ? error.message : String(error), error))
+            }),
+          )
+
+        const runtime = CodeMode.make({
+          tools: toolTree(catalog, callTool),
+          onToolCallStart: ({ index, name, input }) =>
+            Effect.suspend(() => {
+              const shown = (() => {
+                if (input === null || input === undefined) return
+                if (typeof input === "object" && !Array.isArray(input)) {
+                  const value = input as Record<string, unknown>
+                  return Object.keys(value).length > 0 ? value : undefined
+                }
+                return { input }
+              })()
+              calls[index] = { tool: name, status: "running", ...(shown ? { input: shown } : {}) }
+              return publish()
+            }),
+          onToolCallEnd: ({ index, outcome }) =>
+            Effect.suspend(() => {
+              const current = calls[index]
+              if (current) calls[index] = { ...current, status: outcome === "success" ? "completed" : "error" }
+              return publish()
+            }),
+        })
+
+        const abort = Effect.callback<void>((resume) => {
+          if (ctx.abort.aborted) return resume(Effect.void)
+          const handler = () => resume(Effect.void)
+          ctx.abort.addEventListener("abort", handler, { once: true })
+          return Effect.sync(() => ctx.abort.removeEventListener("abort", handler))
+        })
+        const cancelled = (): CodeMode.Result => ({
+          ok: false,
+          error: { kind: "ExecutionFailure", message: "Execution cancelled." },
+          toolCalls: calls.map((call) => ({ name: call.tool })),
+        })
+
+        const result = yield* Effect.raceFirst(runtime.execute(params.code), abort.pipe(Effect.map(cancelled)))
+        const logs = result.logs ?? []
+        const withLogs = (text: string) => {
+          if (logs.length === 0) return text
+          return text.length > 0 ? `${text}\n\nLogs:\n${logs.join("\n")}` : `Logs:\n${logs.join("\n")}`
+        }
+
+        if (!result.ok) {
+          if (ctx.abort.aborted) {
+            return {
+              title: CODE_MODE_TOOL,
+              metadata: { toolCalls: calls, error: true },
+              output: "Execution cancelled.",
+            } satisfies Tool.ExecuteResult<Metadata>
+          }
+          const hints = (result.error.suggestions ?? []).filter((hint) => !result.error.message.includes(hint))
+          return yield* Effect.fail(new Error(withLogs([result.error.message, ...hints].join("\n"))))
+        }
+
+        // The interpreter validates returned values as plain JSON, so stringify cannot throw;
+        // it yields undefined only for a program that returns undefined.
+        const output =
+          typeof result.value === "string"
+            ? result.value
+            : (JSON.stringify(result.value, null, 2) ?? String(result.value))
+
+        return {
+          title: CODE_MODE_TOOL,
+          metadata: { toolCalls: calls },
+          output: withLogs(output),
+          ...(attachments.length > 0 ? { attachments } : {}),
+        } satisfies Tool.ExecuteResult<Metadata>
+      }, Effect.orDie),
+    }
+    return init
+  }),
+)