amalfa 1.0.19 → 1.0.22
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +10 -3
- package/src/cli.ts +3 -3
- package/src/config/defaults.ts +2 -2
- package/src/core/MarkdownMasker.ts +1 -1
- package/src/daemon/index.ts +3 -3
- package/src/mcp/index.ts +31 -15
- package/src/pipeline/AmalfaIngestor.ts +40 -17
- package/src/pipeline/PreFlightAnalyzer.ts +2 -2
- package/src/pipeline/SemanticHarvester.ts +2 -2
- package/src/resonance/services/embedder.ts +1 -1
- package/src/resonance/services/vector-daemon.ts +1 -1
- package/src/utils/DaemonManager.ts +2 -2
- package/src/utils/Notifications.ts +2 -2
- package/src/utils/ServiceLifecycle.ts +3 -3
- package/src/utils/StatsTracker.ts +2 -2
- package/src/utils/ZombieDefense.ts +2 -2
- package/.biomeignore +0 -19
- package/amalfa.config.example.ts +0 -113
- package/biome.json +0 -49
- package/bun.lock +0 -369
- package/tsconfig.json +0 -46
package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "amalfa",
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"version": "1.0.
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"version": "1.0.22",
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"description": "Local-first knowledge graph engine for AI agents. Transforms markdown into searchable memory with MCP protocol.",
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"license": "MIT",
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"homepage": "https://github.com/pjsvis/amalfa#readme",
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@@ -12,6 +12,13 @@
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"type": "git",
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"url": "git+https://github.com/pjsvis/amalfa.git"
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},
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"main": "src/cli.ts",
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"type": "module",
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"files": [
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"src",
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"README.md",
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"LICENSE"
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],
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"keywords": [
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"mcp",
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"model-context-protocol",
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@@ -51,11 +58,11 @@
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"stats": "bun run src/cli.ts stats",
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"doctor": "bun run src/cli.ts doctor",
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"daemon": "bun run src/cli.ts daemon status",
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"help": "bun run src/cli.ts --help"
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"help": "bun run src/cli.ts --help",
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"publish": "npm publish"
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},
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"dependencies": {
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"@modelcontextprotocol/sdk": "1.25.0",
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"amalfa": "^1.0.18",
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"fastembed": "2.0.0",
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"pino": "^10.1.0"
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}
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package/src/cli.ts
CHANGED
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@@ -1,7 +1,7 @@
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#!/usr/bin/env bun
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import { existsSync, statSync } from "
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import { join } from "
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import { spawn } from "
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import { existsSync, statSync } from "fs";
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import { join } from "path";
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import { spawn } from "child_process";
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import pkg from "../package.json" with { type: "json" };
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const VERSION = pkg.version;
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package/src/config/defaults.ts
CHANGED
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* Default settings that can be overridden via amalfa.config.{ts,js,json}
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*/
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import { mkdirSync, existsSync } from "
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import { join } from "
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import { mkdirSync, existsSync } from "fs";
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import { join } from "path";
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/** AMALFA directory structure */
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export const AMALFA_DIRS = {
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package/src/daemon/index.ts
CHANGED
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* File watcher for incremental database updates
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*/
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import { existsSync } from "
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import { watch } from "
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import { join } from "
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import { existsSync } from "fs";
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import { watch } from "fs";
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import { join } from "path";
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import { loadConfig, AMALFA_DIRS } from "@src/config/defaults";
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import { AmalfaIngestor } from "@src/pipeline/AmalfaIngestor";
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import { ResonanceDB } from "@src/resonance/db";
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package/src/mcp/index.ts
CHANGED
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import { appendFileSync } from "
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import { join } from "
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import { appendFileSync } from "fs";
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import { join } from "path";
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import { Server } from "@modelcontextprotocol/sdk/server/index.js";
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import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
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import {
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ListToolsRequestSchema,
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ReadResourceRequestSchema,
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} from "@modelcontextprotocol/sdk/types.js";
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import { loadConfig } from "@src/config/defaults";
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import { AMALFA_DIRS, loadConfig } from "@src/config/defaults";
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import { VectorEngine } from "@src/core/VectorEngine";
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import { ResonanceDB } from "@src/resonance/db";
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import { DaemonManager } from "../utils/DaemonManager";
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import { getLogger } from "../utils/Logger";
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import { ServiceLifecycle } from "../utils/ServiceLifecycle";
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import { AMALFA_DIRS } from "@src/config/defaults";
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const args = process.argv.slice(2);
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const command = args[0] || "serve";
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@@ -296,10 +295,7 @@ async function runServer() {
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if (name === TOOLS.LIST) {
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// TODO: Make this configurable via amalfa.config.ts
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const structure = [
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"docs/",
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"notes/",
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];
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const structure = ["docs/", "notes/"];
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return {
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content: [{ type: "text", text: JSON.stringify(structure, null, 2) }],
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};
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if (name === TOOLS.GARDEN) {
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const filePath = String(args?.file_path);
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const tags = args?.tags as string[];
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let content = await Bun.file(filePath).text();
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// Check for existing tag block and merge/replace
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const tagPattern = /<!-- tags: ([^>]+) -->\s*$/;
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const match = content.match(tagPattern);
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let operation = "injected";
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if (match?.[1]) {
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// Merge with existing tags
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const existingTags = match[1]
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.split(",")
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.map((t) => t.trim())
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.filter(Boolean);
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const mergedTags = [...new Set([...existingTags, ...tags])]; // deduplicate
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const tagBlock = `<!-- tags: ${mergedTags.join(", ")} -->`;
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content = content.replace(tagPattern, `${tagBlock}\n`);
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operation = "merged";
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} else {
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// Append new tag block
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const tagBlock = `<!-- tags: ${tags.join(", ")} -->`;
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content = content.endsWith("\n")
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? `${content}\n${tagBlock}\n`
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: `${content}\n\n${tagBlock}\n`;
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}
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await Bun.write(filePath, content);
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return {
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content: [
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{
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type: "text",
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text: `
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text: `Successfully ${operation} ${tags.length} tags into ${filePath}`,
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},
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],
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};
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* No Persona/CDA complexity - just pure markdown → knowledge graph
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*/
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import { join } from "
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import { Glob } from "bun";
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import { join } from "path";
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import type { AmalfaConfig } from "@src/config/defaults";
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import { EdgeWeaver } from "@src/core/EdgeWeaver";
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import {
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import type { Node, ResonanceDB } from "@src/resonance/db";
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import { Embedder } from "@src/resonance/services/embedder";
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import { SimpleTokenizerService as TokenizerService } from "@src/resonance/services/simpleTokenizer";
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import { getLogger } from "@src/utils/Logger";
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import { Glob } from "bun";
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export interface IngestionResult {
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success: boolean;
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*/
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async ingest(): Promise<IngestionResult> {
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const startTime = performance.now();
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const sources = this.config.sources || ["./docs"];
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this.log.info(`📚 Starting ingestion from: ${sources.join(", ")}`);
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await embedder.embed("init"); // Warm up
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const tokenizer = TokenizerService.getInstance();
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// Discover markdown files
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const files = await this.discoverFiles();
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this.log.info(`📁 Found ${files.length} markdown files`);
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if (!filePath) continue;
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const content = await Bun.file(filePath).text();
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const filename = filePath.split("/").pop() || "unknown";
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const id = filename
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const id = filename
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.replace(".md", "")
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.toLowerCase()
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.replace(/[^a-z0-9-]/g, "-");
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weaver.weave(id, content);
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}
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this.db.commit();
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this.log.info("💾 Forcing WAL checkpoint...");
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this.db.getRawDb().run("PRAGMA wal_checkpoint(TRUNCATE);");
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// OH-104: The Pinch Check (verify physical commit)
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const dbPath = this.db.getRawDb().filename;
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const dbFile = Bun.file(dbPath);
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if (!(await dbFile.exists())) {
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throw new Error(
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"OH-104 VIOLATION: Database file missing after checkpoint",
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);
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}
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const finalSize = dbFile.size;
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if (finalSize === 0) {
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throw new Error(
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"OH-104 VIOLATION: Database file is empty after checkpoint",
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);
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}
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this.log.info(`✅ Pinch Check: db=${(finalSize / 1024).toFixed(1)}KB`);
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const endTime = performance.now();
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const durationSec = (endTime - startTime) / 1000;
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const stats = this.db.getStats();
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this.log.info(
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this.log.info(
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{
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files: processedCount,
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nodes: stats.nodes,
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edges: stats.edges,
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vectors: stats.vectors,
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durationSec: durationSec.toFixed(2),
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},
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"✅ Ingestion complete",
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);
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return {
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success: true,
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}
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}
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} catch (e) {
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this.log.warn(
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this.log.warn(
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{ source: sourcePath, err: e },
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"⚠️ Failed to scan directory",
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);
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}
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}
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// Parse frontmatter
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const fmMatch = content.match(/^---\n([\s\S]*?)\n---/);
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const frontmatter = fmMatch?.[1]
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? this.parseFrontmatter(fmMatch[1])
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: {};
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const frontmatter = fmMatch?.[1] ? this.parseFrontmatter(fmMatch[1]) : {};
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// Generate ID from filename
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const filename = filePath.split("/").pop() || "unknown";
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* Generates .amalfa/logs/pre-flight.log with recommendations.
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*/
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import { existsSync, lstatSync, readdirSync, realpathSync, statSync, writeFileSync } from "
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import { join, relative } from "
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import { existsSync, lstatSync, readdirSync, realpathSync, statSync, writeFileSync } from "fs";
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import { join, relative } from "path";
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import { getLogger } from "@src/utils/Logger";
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import type { AmalfaConfig } from "@src/config/defaults";
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import { AMALFA_DIRS, initAmalfaDirs } from "@src/config/defaults";
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* await harvester.loadIntoResonance(graph);
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*/
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import { existsSync } from "
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import { existsSync } from "fs";
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import { join } from "path";
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import { getLogger } from "@src/utils/Logger";
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import { $ } from "bun";
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import { existsSync } from "
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import { unlink } from "
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import { join } from "
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import { unlink } from "fs/promises";
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import { join } from "path";
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import { ZombieDefense } from "./ZombieDefense";
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import { AMALFA_DIRS, initAmalfaDirs } from "@src/config/defaults";
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package/.biomeignore
DELETED
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@@ -1,19 +0,0 @@
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**/*-bak.html
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**/*.bak
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public/layout-test.html
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public/test
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public/js
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public/css/app.css
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node_modules
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dist
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.DS_Store
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**/*.py
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**/*.c
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*
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database: ".amalfa/resonance.db",
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embeddings: {
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* - "sentence-transformers/all-MiniLM-L6-v2" - Faster (384 dims)
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model: "BAAI/bge-small-en-v1.5",
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dimensions: 384,
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watch: {
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enabled: true,
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*
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* How long to wait after the last file change before
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* triggering re-ingestion. This prevents excessive
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* processing during rapid file edits.
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*
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* - 1000ms (1 second) - Default, good for most cases
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* - 500ms - More responsive, slightly higher CPU
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* - 2000ms - Less responsive, lower CPU
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*/
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debounce: 1000,
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/**
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* Show desktop notifications
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* When enabled, the daemon sends native OS notifications
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* when the knowledge graph is updated.
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*
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* Default: true
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* Set to false for silent operation
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*/
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notifications: true,
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},
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/**
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* Patterns to exclude from ingestion
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*
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* Common exclusions:
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* - "node_modules" - JavaScript dependencies
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* - ".amalfa" - AMALFA data directory
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* - "vendor" - PHP dependencies
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* - "target" - Rust build artifacts
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* - "dist" - Build output
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excludePatterns: ["node_modules", ".git", ".amalfa"],
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};
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{
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"$schema": "https://biomejs.dev/schemas/2.3.8/schema.json",
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"vcs": {
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"enabled": true,
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"clientKind": "git",
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"useIgnoreFile": true
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},
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"files": {
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"ignoreUnknown": false,
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"includes": [
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]
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},
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"formatter": {
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"enabled": true,
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"indentStyle": "tab"
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},
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"linter": {
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"enabled": true,
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"rules": {
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"recommended": true
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}
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},
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"javascript": {
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"quoteStyle": "double"
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}
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},
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"css": {
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"parser": {
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"cssModules": true,
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"tailwindDirectives": true
|
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}
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},
|
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"assist": {
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"enabled": true,
|
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"actions": {
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"source": {
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"organizeImports": "on"
|
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|
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}
|
|
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|
-
}
|
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|
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}
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}
|
package/bun.lock
DELETED
|
@@ -1,369 +0,0 @@
|
|
|
1
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{
|
|
2
|
-
"lockfileVersion": 1,
|
|
3
|
-
"workspaces": {
|
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|
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"": {
|
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|
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"name": "polyvis",
|
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"dependencies": {
|
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|
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"@modelcontextprotocol/sdk": "1.25.0",
|
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|
-
"amalfa": "^1.0.17",
|
|
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|
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"fastembed": "2.0.0",
|
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|
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"pino": "^10.1.0",
|
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|
-
},
|
|
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|
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"devDependencies": {
|
|
13
|
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"@biomejs/biome": "2.3.8",
|
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|
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"@types/bun": "1.3.4",
|
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"only-allow": "^1.2.2",
|
|
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|
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"pino-pretty": "^13.1.3",
|
|
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|
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},
|
|
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|
-
},
|
|
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|
-
},
|
|
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|
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"packages": {
|
|
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|
-
"@anush008/tokenizers": ["@anush008/tokenizers@0.0.0", "", { "optionalDependencies": { "@anush008/tokenizers-darwin-universal": "0.0.0", "@anush008/tokenizers-linux-x64-gnu": "0.0.0", "@anush008/tokenizers-win32-x64-msvc": "0.0.0" } }, "sha512-IQD9wkVReKAhsEAbDjh/0KrBGTEXelqZLpOBRDaIRvlzZ9sjmUP+gKbpvzyJnei2JHQiE8JAgj7YcNloINbGBw=="],
|
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|
-
|
|
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|
-
"@anush008/tokenizers-darwin-universal": ["@anush008/tokenizers-darwin-universal@0.0.0", "", { "os": "darwin" }, "sha512-SACpWEooTjFX89dFKRVUhivMxxcZRtA3nJGVepdLyrwTkQ1TZQ8581B5JoXp0TcTMHfgnDaagifvVoBiFEdNCQ=="],
|
|
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|
-
|
|
25
|
-
"@anush008/tokenizers-linux-x64-gnu": ["@anush008/tokenizers-linux-x64-gnu@0.0.0", "", { "os": "linux", "cpu": "x64" }, "sha512-TLjByOPWUEq51L3EJkS+slyH57HKJ7lAz/aBtEt7TIPq4QsE2owOPGovByOLIq1x5Wgh9b+a4q2JasrEFSDDhg=="],
|
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|
-
|
|
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|
-
"@anush008/tokenizers-win32-x64-msvc": ["@anush008/tokenizers-win32-x64-msvc@0.0.0", "", { "os": "win32", "cpu": "x64" }, "sha512-/5kP0G96+Cr6947F0ZetXnmL31YCaN15dbNbh2NHg7TXXRwfqk95+JtPP5Q7v4jbR2xxAmuseBqB4H/V7zKWuw=="],
|
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|
-
|
|
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|
-
"@biomejs/biome": ["@biomejs/biome@2.3.8", "", { "optionalDependencies": { "@biomejs/cli-darwin-arm64": "2.3.8", "@biomejs/cli-darwin-x64": "2.3.8", "@biomejs/cli-linux-arm64": "2.3.8", "@biomejs/cli-linux-arm64-musl": "2.3.8", "@biomejs/cli-linux-x64": "2.3.8", "@biomejs/cli-linux-x64-musl": "2.3.8", "@biomejs/cli-win32-arm64": "2.3.8", "@biomejs/cli-win32-x64": "2.3.8" }, "bin": { "biome": "bin/biome" } }, "sha512-Qjsgoe6FEBxWAUzwFGFrB+1+M8y/y5kwmg5CHac+GSVOdmOIqsAiXM5QMVGZJ1eCUCLlPZtq4aFAQ0eawEUuUA=="],
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|
-
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|
-
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|
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-
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|
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-
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-
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"@biomejs/cli-linux-x64": ["@biomejs/cli-linux-x64@2.3.8", "", { "os": "linux", "cpu": "x64" }, "sha512-QDPMD5bQz6qOVb3kiBui0zKZXASLo0NIQ9JVJio5RveBEFgDgsvJFUvZIbMbUZT3T00M/1wdzwWXk4GIh0KaAw=="],
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|
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-
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|
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|
-
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-
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|
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-
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|
46
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-
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|
48
|
-
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|
|
50
|
-
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51
|
-
"@modelcontextprotocol/sdk": ["@modelcontextprotocol/sdk@1.25.0", "", { "dependencies": { "@hono/node-server": "^1.19.7", "ajv": "^8.17.1", "ajv-formats": "^3.0.1", "content-type": "^1.0.5", "cors": "^2.8.5", "cross-spawn": "^7.0.5", "eventsource": "^3.0.2", "eventsource-parser": "^3.0.0", "express": "^5.0.1", "express-rate-limit": "^7.5.0", "jose": "^6.1.1", "json-schema-typed": "^8.0.2", "pkce-challenge": "^5.0.0", "raw-body": "^3.0.0", "zod": "^3.25 || ^4.0", "zod-to-json-schema": "^3.25.0" }, "peerDependencies": { "@cfworker/json-schema": "^4.1.1" }, "optionalPeers": ["@cfworker/json-schema"] }, "sha512-z0Zhn/LmQ3yz91dEfd5QgS7DpSjA4pk+3z2++zKgn5L6iDFM9QapsVoAQSbKLvlrFsZk9+ru6yHHWNq2lCYJKQ=="],
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|
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-
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53
|
-
"@pinojs/redact": ["@pinojs/redact@0.4.0", "", {}, "sha512-k2ENnmBugE/rzQfEcdWHcCY+/FM3VLzH9cYEsbdsoqrvzAKRhUZeRNhAZvB8OitQJ1TBed3yqWtdjzS6wJKBwg=="],
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|
54
|
-
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55
|
-
"@types/bun": ["@types/bun@1.3.4", "", { "dependencies": { "bun-types": "1.3.4" } }, "sha512-EEPTKXHP+zKGPkhRLv+HI0UEX8/o+65hqARxLy8Ov5rIxMBPNTjeZww00CIihrIQGEQBYg+0roO5qOnS/7boGA=="],
|
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56
|
-
|
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-
"@types/node": ["@types/node@24.10.1", "", { "dependencies": { "undici-types": "~7.16.0" } }, "sha512-GNWcUTRBgIRJD5zj+Tq0fKOJ5XZajIiBroOF0yvj2bSU1WvNdYS/dn9UxwsujGW4JX06dnHyjV2y9rRaybH0iQ=="],
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|
-
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"accepts": ["accepts@2.0.0", "", { "dependencies": { "mime-types": "^3.0.0", "negotiator": "^1.0.0" } }, "sha512-5cvg6CtKwfgdmVqY1WIiXKc3Q1bkRqGLi+2W/6ao+6Y7gu/RCwRuAhGEzh5B4KlszSuTLgZYuqFqo5bImjNKng=="],
|
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|
-
|
|
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|
-
"ajv": ["ajv@8.17.1", "", { "dependencies": { "fast-deep-equal": "^3.1.3", "fast-uri": "^3.0.1", "json-schema-traverse": "^1.0.0", "require-from-string": "^2.0.2" } }, "sha512-B/gBuNg5SiMTrPkC+A2+cW0RszwxYmn6VYxB/inlBStS5nx6xHIt/ehKRhIMhqusl7a8LjQoZnjCs5vhwxOQ1g=="],
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-
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"ajv-formats": ["ajv-formats@3.0.1", "", { "dependencies": { "ajv": "^8.0.0" } }, "sha512-8iUql50EUR+uUcdRQ3HDqa6EVyo3docL8g5WJ3FNcWmu62IbkGUue/pEyLBW8VGKKucTPgqeks4fIU1DA4yowQ=="],
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|
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}
|
package/tsconfig.json
DELETED
|
@@ -1,46 +0,0 @@
|
|
|
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|
-
{
|
|
2
|
-
"compilerOptions": {
|
|
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|
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// Environment setup & latest features
|
|
4
|
-
"lib": ["ESNext"],
|
|
5
|
-
"target": "ESNext",
|
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|
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"module": "Preserve",
|
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7
|
-
"moduleDetection": "force",
|
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|
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"jsx": "react-jsx",
|
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|
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"allowJs": true,
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|
-
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|
-
// Bundler mode
|
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|
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"moduleResolution": "bundler",
|
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"allowImportingTsExtensions": true,
|
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"verbatimModuleSyntax": true,
|
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|
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"noEmit": true,
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|
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|
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// Best practices
|
|
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|
-
"strict": true,
|
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|
-
"skipLibCheck": true,
|
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|
-
"noFallthroughCasesInSwitch": true,
|
|
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|
-
"noUncheckedIndexedAccess": true,
|
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|
-
"noImplicitOverride": true,
|
|
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|
-
|
|
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|
-
// Some stricter flags (disabled by default)
|
|
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|
-
"noUnusedLocals": false,
|
|
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|
-
"noUnusedParameters": false,
|
|
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|
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"noPropertyAccessFromIndexSignature": false,
|
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|
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"baseUrl": ".",
|
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|
-
"paths": {
|
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|
-
"@src/*": ["./src/*"],
|
|
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|
-
"@scripts/*": ["./scripts/*"],
|
|
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|
-
"@resonance/*": ["./src/resonance/*"],
|
|
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|
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"@/*": ["./*"]
|
|
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|
-
}
|
|
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|
-
},
|
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|
-
"exclude": [
|
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|
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"public/docs",
|
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|
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"docs/webdocs",
|
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|
-
"node_modules",
|
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|
-
"dist",
|
|
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|
-
".resonance",
|
|
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|
-
"briefs",
|
|
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|
-
"examples",
|
|
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|
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"experiments"
|
|
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|
-
]
|
|
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|
-
}
|