alchemylab 1.4.3 → 1.4.4

package/dist/mcp-direct.js

@@ -1161,7 +1161,11 @@ try{if(o.default.existsSync(this.projectFilePath)){this.logger.debug("Updating e
 const t=JSON.parse(o.default.readFileSync(this.projectFilePath,"utf8"))
 t.id=e,t.updatedAt=(new Date).toISOString(),o.default.writeFileSync(this.projectFilePath,JSON.stringify(t,null,2)),this.logger.info("Successfully updated project.json file",{path:this.projectFilePath,oldId:this.projectId,newId:e})}else this.logger.warn("project.json file does not exist, cannot update",{path:this.projectFilePath,projectId:e})
 this.projectId=e,this.initialized=!0,this.logger.info("Project ID update completed successfully",{projectId:e,filePath:this.projectFilePath})}catch(t){const r=(0,c.getErrorMessage)(t),n=`Cannot start AlchemyMCP: Unable to update project.json file.\nFile: ${this.projectFilePath}\nProject ID: ${e}\n\nPlease check:\n\u2022 File permissions - ensure you can write to the alchemy_lab directory\n\u2022 Disk space - ensure sufficient space available\n\u2022 File not in use - close any editors that might have project.json open\n\u2022 Directory exists - alchemy_lab folder should be writable\n\nOriginal error: `+r
-throw this.logger.error("Critical: Project ID update failed, cannot start server",{error:t instanceof Error?t.stack:t+"",projectId:e,filePath:this.projectFilePath,directory:this.alchemyPath}),Error(n)}}isInitialized(){return this.initialized}createMiddleware(){return r(this.getProjectId(),this.logger)}}},1887(e,exports,t){"use strict"
+throw this.logger.error("Critical: Project ID update failed, cannot start server",{error:t instanceof Error?t.stack:t+"",projectId:e,filePath:this.projectFilePath,directory:this.alchemyPath}),Error(n)}}isInitialized(){return this.initialized}createMiddleware(){return r(this.getProjectId(),this.logger)}}},1816(e,exports){"use strict"
+Object.defineProperty(exports,"__esModule",{value:!0}),exports.formatCommandOutput=function(e,n,o){const s=o.maxOut??t,i=o.maxErr??r,a=e.length>s,c=n.length>i,l=a||c
+return{output:[a?"\u2026"+e.slice(-s):e,c?"\u2026"+n.slice(-i):n].filter(Boolean).join("\n")||"(no output)",truncatedNote:l?`\n_(output truncated \u2014 view full with \`log:${o.invocationId}\`)_`:"",logFooter:`Log: \`log:${o.invocationId}\``}},exports.formatCombinedOutput=function(e,r){const n=r.maxOut??t,o=e.length>n
+return{output:o?"\u2026"+e.slice(-n):e,truncatedNote:o?`\n_(output truncated \u2014 view full with \`log:${r.invocationId}\`)_`:"",logFooter:`Log: \`log:${r.invocationId}\``}}
+const t=3e3,r=1500},1887(e,exports,t){"use strict"
 Object.defineProperty(exports,"__esModule",{value:!0}),exports.ProxyClient=void 0
 const r=t(9860),n=t(5674),o=t(4192),s=t(2161),i=t(8824)
 class a extends o.BaseApiClient{constructor(e,t,r,n,o,s,i){super(e,t.child({component:"proxy-client"}),r,o,i),this.projectClient=n,this.connectionStatusManager=s,this.logger.info("Proxy client initialized")}setConnectionStatusManager(e){this.logger.debug("Setting connection status manager in ProxyClient"),this.connectionStatusManager=e,this.logger.info("Connection status manager set on "+this.constructor.name)}setAlchemyPath(e){this.logger.info(`Set alchemy path to ${e} on ${this.constructor.name}`)}isNetworkError(e){return"ECONNREFUSED"===e?.code||"ECONNRESET"===e?.code||"ETIMEDOUT"===e?.code||e?.message?.includes("network")||e?.message?.includes("connection")||"ConnectionError"===e?.name||503===e?.status||504===e?.status}isOffline(){return this.connectionStatusManager?.isOffline()||!1}async handlePotentialOfflineOperation(e,t,r){if(this.isOffline()){this.logger.info(`Operation ${e} attempted while offline`,{params:JSON.stringify(t).substring(0,100)+"..."})
@@ -1249,16 +1253,16 @@ if(p.push("session: "+(r?.sessionId||"NONE")),r?.sessionId){const t=await e.getS
 if(p.push("reqId: "+(t||"NONE")),t){const e=await o.proxyGet(`/api/projects/${n.projectId}/requests/${t}/test-runs`),r=e?.data||e||[],s=Array.isArray(r)?r.find((e=>e.worktreePath||e.worktree_path)):null
 p.push(`runs: ${Array.isArray(r)?r.length:0}, withWorktree: ${s?.id||"NONE"}, path: ${s?.worktreePath||s?.worktree_path||"NONE"}`),s&&(h=s.worktreePath||s.worktree_path,c.info("Using test worktree from request test run",{worktreePath:h,reqId:t}))}}}catch(e){c.warn("Failed to resolve test worktree",{error:(0,r.getErrorMessage)(e)})}if(!h)return a({success:!1,error:"no_worktree"}),{content:[{type:"text",text:`No test worktree found.\n\nDiagnostics:\n${p.length>0?p.map((e=>"\u2022 "+e)).join("\n"):"\u2022 No session identity found"}\n\nEnsure this session is linked to a test process and a test run has been created.`}],isError:!0}
 const m=[],{default:g}=await Promise.resolve().then(t.t.bind(t,6928,23)),{default:f}=await Promise.resolve().then(t.t.bind(t,9896,23)),{ALCHEMY_DIR_NAME:y}=await Promise.resolve().then(t.bind(t,4139)),w=g.join(h,y,"command-logs")
-try{f.mkdirSync(w,{recursive:!0})}catch{}const{runTrackedShellCommand:b}=await Promise.resolve().then(t.bind(t,4600)),{sessionIdentity:I}=await Promise.resolve().then(t.bind(t,6688)),k=I.getIdentity()?.sessionId
+try{f.mkdirSync(w,{recursive:!0})}catch{}const{runTrackedShellCommand:b}=await Promise.resolve().then(t.bind(t,4600)),{formatCombinedOutput:I}=await Promise.resolve().then(t.bind(t,1816)),{sessionIdentity:k}=await Promise.resolve().then(t.bind(t,6688)),v=k.getIdentity()?.sessionId
 for(const t of l){c.info("Executing test command",{name:t.name,command:t.command,timeout:t.timeout,cwd:h})
 const r=`${t.name.replace(/[^a-zA-Z0-9._-]/g,"_")}-${Date.now()}`,n=g.join(w,r+".log")
 let o=null
-try{o=f.createWriteStream(n,{flags:"w"}),o.write(`# ${(new Date).toISOString()} starting: ${t.command}\n# cwd: ${h}\n# timeout: ${t.timeout}s\n\n`)}catch(e){c.warn("Failed to open command log file",{logPath:n,error:e+""})}const s=await b(t.command,{cwd:h,timeoutMs:1e3*t.timeout,env:{...u.env,FORCE_COLOR:"0"},onChunk:o?(e,t)=>{o?.write(t)}:void 0},{id:r,name:t.name,sessionId:k,logPath:n})
+try{o=f.createWriteStream(n,{flags:"w"}),o.write(`# ${(new Date).toISOString()} starting: ${t.command}\n# cwd: ${h}\n# timeout: ${t.timeout}s\n\n`)}catch(e){c.warn("Failed to open command log file",{logPath:n,error:e+""})}const s=await b(t.command,{cwd:h,timeoutMs:1e3*t.timeout,env:{...u.env,FORCE_COLOR:"0"},onChunk:o?(e,t)=>{o?.write(t)}:void 0},{id:r,name:t.name,sessionId:v,logPath:n})
 o&&(o.write(`\n# exit: ${s.exitCode}${s.timedOut?" (timed out)":""}\n`),o.end())
-const i=(s.stdout+(s.stderr?"\n"+s.stderr:"")).trim().slice(-4e3)
-if(m.push({name:t.name,command:t.command,exitCode:s.exitCode,output:i,timedOut:s.timedOut}),"setup"===e.commandName&&0!==s.exitCode)break}const v=m.every((e=>0===e.exitCode)),C=m.map((e=>{const t=e.timedOut?"\u23f1 TIMEOUT":0===e.exitCode?"\u2705 PASS":`\u274c FAIL (exit ${e.exitCode})`
-return`### ${e.name}: ${t}\n\`\`\`\n$ ${e.command}\n${e.output}\n\`\`\``})).join("\n\n")
-return a({success:!0}),{content:[{type:"text",text:`## ${"setup"===e.commandName?"Setup":e.commandName} \u2014 ${v?"PASSED":"FAILED"}\n\n${C}`}]}}catch(e){return a({success:!1,error:"execution_error"}),{content:[{type:"text",text:"Failed to execute test command: "+(0,r.getErrorMessage)(e)}],isError:!0}}},exports.handleReportTestResults=async function(e,s,i,a,c,l){const d=c.startTimer("tool_execution_time")
+const i=(s.stdout+(s.stderr?"\n"+s.stderr:"")).trim(),{output:a,truncatedNote:l,logFooter:d}=I(i,{invocationId:r})
+if(m.push({name:t.name,command:t.command,exitCode:s.exitCode,output:a,timedOut:s.timedOut,invocationId:r,truncatedNote:l,logFooter:d}),"setup"===e.commandName&&0!==s.exitCode)break}const C=m.every((e=>0===e.exitCode)),_=m.map((e=>{const t=e.timedOut?"\u23f1 TIMEOUT":0===e.exitCode?"\u2705 PASS":`\u274c FAIL (exit ${e.exitCode})`
+return`### ${e.name}: ${t}\n\`\`\`\n$ ${e.command}\n${e.output}\n\`\`\`${e.truncatedNote}\n${e.logFooter}`})).join("\n\n")
+return a({success:!0}),{content:[{type:"text",text:`## ${"setup"===e.commandName?"Setup":e.commandName} \u2014 ${C?"PASSED":"FAILED"}\n\n${_}`}]}}catch(e){return a({success:!1,error:"execution_error"}),{content:[{type:"text",text:"Failed to execute test command: "+(0,r.getErrorMessage)(e)}],isError:!0}}},exports.handleReportTestResults=async function(e,s,i,a,c,l){const d=c.startTimer("tool_execution_time")
 try{const{sessionIdentity:u}=await Promise.resolve().then(t.bind(t,6688)),h=await u.getSessionRequestId(i,a,l?.sessionId)
 if(!h)return d({success:!1,error:"no_request_association"}),{content:[{type:"text",text:"Cannot report test results: this session is not associated with a request."}],isError:!0}
 const p=await i.proxyGet(`/api/projects/${s.projectId}/requests/${h}/test-runs`),m=p?.data||p||[],g=Array.isArray(m)?m:[],f=g.find((e=>"pending"===e.status||"running"===e.status))||g[0]
@@ -2458,51 +2462,48 @@ const a=await r.updateDocument(e.planId,i),c=a.localId||a.id
 return o.info("Plan appended",{planId:c,appendedLength:e.content.length}),{content:[{type:"text",text:`\u2705 **Plan Appended**\n\n**Plan ID:** ${c}\n**Appended:** ${e.content.length} characters\n**Total Length:** ${s.length} characters`}]}}catch(e){return o.error("Failed to append to plan",{error:(0,r.getErrorMessage)(e)}),{content:[{type:"text",text:"\u274c **Failed to append to plan:** "+(0,r.getErrorMessage)(e)}],isError:!0}}}
 const r=t(8824)},4425(e,exports,t){"use strict"
 var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}}
-Object.defineProperty(exports,"__esModule",{value:!0}),exports.handleCommands=async function(e,t,r,u,h,p,m){const g=h.startTimer("tool_execution_time"),f=e.operation||"run"
-try{const h=await r.proxyGet(`/api/projects/${t.projectId}/check-commands`),y=h?.data||h||[],w=y.filter((e=>e.isActive)),b=y.filter((e=>!e.isActive))
-if("list"===f){if(0===y.length)return g({success:!0}),{content:[{type:"text",text:'No commands configured for this project yet.\n\nUse `commands({ operation: "register", commands: [{ name: "typecheck", command: "tsc --noEmit", description: "..." }] })` to add one, or `commands({ operation: "setup" })` to spawn the architect for an interview.'}],...(0,a.alchemyMeta)({kind:"list-commands"})}
+Object.defineProperty(exports,"__esModule",{value:!0}),exports.handleCommands=async function(e,t,r,h,p,m,g){const f=p.startTimer("tool_execution_time"),y=e.operation||"run"
+try{const p=await r.proxyGet(`/api/projects/${t.projectId}/check-commands`),w=p?.data||p||[],b=w.filter((e=>e.isActive)),I=w.filter((e=>!e.isActive))
+if("list"===y){if(0===w.length)return f({success:!0}),{content:[{type:"text",text:'No commands configured for this project yet.\n\nUse `commands({ operation: "register", commands: [{ name: "typecheck", command: "tsc --noEmit", description: "..." }] })` to add one, or `commands({ operation: "setup" })` to spawn the architect for an interview.'}],...(0,c.alchemyMeta)({kind:"list-commands"})}
 const e=[]
-return w.length>0&&(e.push(`## Available Commands (${w.length})\n`),e.push(...w.map((e=>`- **${e.name}**: \`${e.command}\`${e.cwd?` (in \`${e.cwd}\`)`:""}${e.description?" \u2014 "+e.description:""}`)))),b.length>0&&(e.push(`\n## Pending Approval (${b.length})\n`),e.push(...b.map((e=>`- **${e.name}**: \`${e.command}\`${e.cwd?` (in \`${e.cwd}\`)`:""} \u2014 \u23f3 waiting for user approval`)))),e.push('\nRun: `commands({ name: "name" })`\nRegister: `commands({ operation: "register", commands: [{ name, command, description, cwd? }, ...] })` \u2014 submits 1+ commands for approval. Single-item arrays work for one command; multiples bundle into one batch notification.\nRemove: `commands({ operation: "remove", name: "..." })`\nSetup (interactive): `commands({ operation: "setup" })` \u2014 spawns the command-architect for guided setup'),g({success:!0}),{content:[{type:"text",text:e.join("\n")}],...(0,a.alchemyMeta)({kind:"list-commands"})}}if("setup"===f){const t=m?.sessionId,n=t?await l.sessionIdentity.getSessionRequestId(r,u,t):void 0
-try{const r=await fetch((0,d.getActionServerBaseUrl)()+"/api/setup-commands",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({requestId:n,parentSessionId:t,context:e.context}),signal:AbortSignal.timeout(15e3)})
+return b.length>0&&(e.push(`## Available Commands (${b.length})\n`),e.push(...b.map((e=>`- **${e.name}**: \`${e.command}\`${e.cwd?` (in \`${e.cwd}\`)`:""}${e.description?" \u2014 "+e.description:""}`)))),I.length>0&&(e.push(`\n## Pending Approval (${I.length})\n`),e.push(...I.map((e=>`- **${e.name}**: \`${e.command}\`${e.cwd?` (in \`${e.cwd}\`)`:""} \u2014 \u23f3 waiting for user approval`)))),e.push('\nRun: `commands({ name: "name" })`\nRegister: `commands({ operation: "register", commands: [{ name, command, description, cwd? }, ...] })` \u2014 submits 1+ commands for approval. Single-item arrays work for one command; multiples bundle into one batch notification.\nRemove: `commands({ operation: "remove", name: "..." })`\nSetup (interactive): `commands({ operation: "setup" })` \u2014 spawns the command-architect for guided setup'),f({success:!0}),{content:[{type:"text",text:e.join("\n")}],...(0,c.alchemyMeta)({kind:"list-commands"})}}if("setup"===y){const t=g?.sessionId,n=t?await d.sessionIdentity.getSessionRequestId(r,h,t):void 0
+try{const r=await fetch((0,u.getActionServerBaseUrl)()+"/api/setup-commands",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({requestId:n,parentSessionId:t,context:e.context}),signal:AbortSignal.timeout(15e3)})
 if(!r.ok){const e=await r.text().catch((()=>""))
-return g({success:!1,error:"spawn_failed"}),{content:[{type:"text",text:`commands setup failed: action server returned ${r.status}: ${e.slice(0,300)}`}],isError:!0}}const o=await r.json()
-return o.success&&o.data?(g({success:!0}),{content:[{type:"text",text:`Commands setup session started.\nWorktree: ${o.data.worktreePath} (branch: ${o.data.branch})\n\nThe command-architect agent is now interviewing the user. You will receive a notification on your next turn when configuration completes \u2014 continue with other work in the meantime.`}],...(0,a.alchemyMeta)({kind:"spawn-subagent",spawnedSessionId:o.data.sessionId,agentType:"command-architect",description:"Commands setup"})}):(g({success:!1,error:"spawn_failed"}),{content:[{type:"text",text:"commands setup failed: "+(o.error||"unknown error")}],isError:!0})}catch(e){return g({success:!1,error:"spawn_failed"}),{content:[{type:"text",text:"commands setup failed: "+(0,c.getErrorMessage)(e)}],isError:!0}}}if("register"===f){if(!Array.isArray(e.commands)||0===e.commands.length)return g({success:!1,error:"missing_commands"}),{content:[{type:"text",text:"Error: `commands` array is required and must be non-empty for the register operation."}],isError:!0}
-const n=function(e){return e?.sessionId||l.sessionIdentity.getIdentity()?.sessionId||null}(m)
-if(!n)return g({success:!1,error:"no_session"}),{content:[{type:"text",text:"Error: no session context available to attribute approval notifications."}],isError:!0}
-const o=new Set(y.map((e=>e.name.toLowerCase()))),s=[],i=[]
+return f({success:!1,error:"spawn_failed"}),{content:[{type:"text",text:`commands setup failed: action server returned ${r.status}: ${e.slice(0,300)}`}],isError:!0}}const o=await r.json()
+return o.success&&o.data?(f({success:!0}),{content:[{type:"text",text:`Commands setup session started.\nWorktree: ${o.data.worktreePath} (branch: ${o.data.branch})\n\nThe command-architect agent is now interviewing the user. You will receive a notification on your next turn when configuration completes \u2014 continue with other work in the meantime.`}],...(0,c.alchemyMeta)({kind:"spawn-subagent",spawnedSessionId:o.data.sessionId,agentType:"command-architect",description:"Commands setup"})}):(f({success:!1,error:"spawn_failed"}),{content:[{type:"text",text:"commands setup failed: "+(o.error||"unknown error")}],isError:!0})}catch(e){return f({success:!1,error:"spawn_failed"}),{content:[{type:"text",text:"commands setup failed: "+(0,l.getErrorMessage)(e)}],isError:!0}}}if("register"===y){if(!Array.isArray(e.commands)||0===e.commands.length)return f({success:!1,error:"missing_commands"}),{content:[{type:"text",text:"Error: `commands` array is required and must be non-empty for the register operation."}],isError:!0}
+const n=function(e){return e?.sessionId||d.sessionIdentity.getIdentity()?.sessionId||null}(g)
+if(!n)return f({success:!1,error:"no_session"}),{content:[{type:"text",text:"Error: no session context available to attribute approval notifications."}],isError:!0}
+const o=new Set(w.map((e=>e.name.toLowerCase()))),s=[],i=[]
 for(const t of e.commands){const e=t.name?.trim(),r=t.command?.trim(),n=t.description?.trim()
-e&&r&&n?o.has(e.toLowerCase())?i.push({name:e,reason:"already exists"}):(o.add(e.toLowerCase()),s.push({name:e,command:r,description:n,cwd:t.cwd?.trim(),timeout:t.timeout})):i.push({name:e||"(unnamed)",reason:"missing required fields (name, command, description)"})}const d=await Promise.all(s.map((async e=>{try{const n=await r.proxyPost(`/api/projects/${t.projectId}/check-commands`,{name:e.name,command:e.command,description:e.description,timeout:e.timeout||60,cwd:e.cwd||void 0,addedBySessionId:m?.sessionId,isActive:!1}),o=n?.data?.id||n?.id
+e&&r&&n?o.has(e.toLowerCase())?i.push({name:e,reason:"already exists"}):(o.add(e.toLowerCase()),s.push({name:e,command:r,description:n,cwd:t.cwd?.trim(),timeout:t.timeout})):i.push({name:e||"(unnamed)",reason:"missing required fields (name, command, description)"})}const a=await Promise.all(s.map((async e=>{try{const n=await r.proxyPost(`/api/projects/${t.projectId}/check-commands`,{name:e.name,command:e.command,description:e.description,timeout:e.timeout||60,cwd:e.cwd||void 0,addedBySessionId:g?.sessionId,isActive:!1}),o=n?.data?.id||n?.id
 if(!o)throw Error("command create returned no id")
-return{ok:!0,proposal:e,commandId:o}}catch(t){return{ok:!1,proposal:e,error:(0,c.getErrorMessage)(t)}}}))),h=d.filter((e=>e.ok))
-for(const e of d)e.ok||i.push({name:e.proposal.name,reason:e.error})
+return{ok:!0,proposal:e,commandId:o}}catch(t){return{ok:!1,proposal:e,error:(0,l.getErrorMessage)(t)}}}))),u=a.filter((e=>e.ok))
+for(const e of a)e.ok||i.push({name:e.proposal.name,reason:e.error})
 const p=[]
-if(h.length>0)try{const e=r.getSessionMessageClient()
+if(u.length>0)try{const e=r.getSessionMessageClient()
 if(!e)throw Error("session message client unavailable")
-await e.createQuestion({fromSessionId:n,questionType:"alternatives",question:`Command batch approval: ${h.length} command${1===h.length?"":"s"}`,options:[{id:"approve-all",label:"Approve all",description:`Activate all ${h.length} commands`},{id:"deny-all",label:"Deny all",description:"Delete all proposed commands"},{id:"select",label:"Select\u2026",description:"Pick which to approve individually"}],context:JSON.stringify({type:"command-approval-batch",commands:h.map((e=>({commandId:e.commandId,name:e.proposal.name,command:e.proposal.command,description:e.proposal.description,cwd:e.proposal.cwd})))}),category:"action-required",priority:"high"})
-for(const e of h)p.push(e.proposal.name)}catch(e){await Promise.allSettled(h.map((e=>r.proxyDelete(`/api/projects/${t.projectId}/check-commands/${e.commandId}`).catch((t=>u.warn("Rollback delete after batch question failure",{commandId:e.commandId,error:(0,c.getErrorMessage)(t)}))))))
-for(const t of h)i.push({name:t.proposal.name,reason:(0,c.getErrorMessage)(e)})}u.info("Register submitted commands for approval",{total:e.commands.length,submitted:p.length,skipped:i.length}),g({success:!0})
-const f=[`## Submitted ${p.length} command${1===p.length?"":"s"} for approval${i.length?`, ${i.length} skipped`:""}`]
-return p.length>0&&(f.push("","### Pending approval"),f.push(...p.map((e=>`- **${e}**`))),f.push("","The user will see one approval notification per command. Approved commands become runnable; denied ones are removed.")),i.length>0&&(f.push("",`### Skipped (${i.length})`),f.push(...i.map((e=>`- **${e.name}** \u2014 ${e.reason}`)))),f.push("",'Use `commands({ operation: "list" })` to see status.'),{content:[{type:"text",text:f.join("\n")}],...(0,a.alchemyMeta)({kind:"register-commands"})}}if("remove"===f){if(!e.name?.trim())return g({success:!1,error:"missing_name"}),{content:[{type:"text",text:"Error: `name` is required when removing a command."}],isError:!0}
-const n=y.find((t=>t.name.toLowerCase()===e.name.toLowerCase()))
-if(!n)return g({success:!1,error:"not_found"}),{content:[{type:"text",text:`Command "${e.name}" not found.`}],isError:!0}
-try{return await r.proxyDelete(`/api/projects/${t.projectId}/check-commands/${n.id}`),u.info("Removed command",{name:n.name,id:n.id}),g({success:!0}),{content:[{type:"text",text:`Removed command **${n.name}**.`}]}}catch(e){return g({success:!1,error:"remove_failed"}),{content:[{type:"text",text:"Failed to remove command: "+(0,c.getErrorMessage)(e)}],isError:!0}}}if(!e.name){const e=w.map((e=>e.name)).join(", ")
-return g({success:!1,error:"missing_name"}),{content:[{type:"text",text:"Error: `name` is required when running a command.\n\nAvailable commands: "+(e||"(none configured)")}],isError:!0}}const I=w.find((t=>t.name.toLowerCase()===e.name.toLowerCase()))
-if(!I){const t=w.map((e=>e.name)).join(", ")
-return g({success:!1,error:"not_found"}),{content:[{type:"text",text:`Command "${e.name}" not found.\n\nAvailable commands: ${t||"(none configured)"}`}],isError:!0}}let k=e.args?`${I.command} ${e.args}`:I.command
-e.grep&&(k=`${k} 2>&1 | grep -i ${JSON.stringify(e.grep)}`)
-const v=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.basePath||t.basePath,C=I.cwd?o.default.resolve(v,I.cwd):v,_=o.default.join(v,i.ALCHEMY_DIR_NAME,"command-logs"),E=`${I.name.replace(/[^a-zA-Z0-9._-]/g,"_")}-${Date.now()}`,S=o.default.join(_,E+".log")
-let q=null
-try{s.default.mkdirSync(_,{recursive:!0}),q=s.default.createWriteStream(S,{flags:"w"}),q.write(`# ${(new Date).toISOString()} starting: ${k}\n# cwd: ${C}\n# timeout: ${I.timeout||60}s\n\n`)}catch(e){u.warn("Failed to open command log file",{logPath:S,error:(0,c.getErrorMessage)(e)})}u.info("Running command",{name:I.name,command:k,cwd:C,configuredCwd:I.cwd,logPath:S})
-const T=await(0,n.runTrackedShellCommand)(k,{cwd:C,timeoutMs:1e3*(I.timeout||60),env:{...process.env,FORCE_COLOR:"0"},onChunk:q?(e,t)=>{q?.write(t)}:void 0},{id:E,name:I.name,sessionId:m?.sessionId,logPath:S})
-q&&(q.write(`\n# exit: ${T.exitCode}${T.timedOut?" (timed out)":""}\n`),q.end())
-let x=T.stdout,P=T.stderr
-const R=T.exitCode,M=T.timedOut,$=8e3,j=4e3
-x.length>$&&(x="\u2026"+x.slice(-$)),P.length>j&&(P="\u2026"+P.slice(-j))
-const O=M?"TIMEOUT":null,D=[x,P].filter(Boolean).join("\n")||"(no output)"
-let A
-if(p)try{const e=await p.createToolRecord({projectId:t.projectId,type:"run-command",metadata:{name:I.name,command:k,exitCode:R,timedOut:M,status:M?"timeout":0===R?"success":"failed",timestamp:(new Date).toISOString()}})
-A=e?.id}catch(e){u.debug("Failed to create tool record for command run",{error:(0,c.getErrorMessage)(e)})}return g({success:!0}),{content:[{type:"text",text:`## ${I.name}${O?` \u2014 ${O} (killed after ${I.timeout}s)`:""}\n\`\`\`\n$ ${k}\n${D}\n\`\`\`\n\nExit code: ${R}\nFull log: ${S}`}],...(0,a.alchemyMeta)({kind:"run-command",toolRecordId:A})}}catch(e){return g({success:!1,error:"api_error"}),{content:[{type:"text",text:"Failed to run command: "+(0,c.getErrorMessage)(e)}],isError:!0}}}
-const n=t(4600),o=r(t(6928)),s=r(t(9896)),i=t(4139),a=t(2272),c=t(8824),l=t(6688),d=t(9414)},4466(e,exports,t){"use strict"
+await e.createQuestion({fromSessionId:n,questionType:"alternatives",question:`Command batch approval: ${u.length} command${1===u.length?"":"s"}`,options:[{id:"approve-all",label:"Approve all",description:`Activate all ${u.length} commands`},{id:"deny-all",label:"Deny all",description:"Delete all proposed commands"},{id:"select",label:"Select\u2026",description:"Pick which to approve individually"}],context:JSON.stringify({type:"command-approval-batch",commands:u.map((e=>({commandId:e.commandId,name:e.proposal.name,command:e.proposal.command,description:e.proposal.description,cwd:e.proposal.cwd})))}),category:"action-required",priority:"high"})
+for(const e of u)p.push(e.proposal.name)}catch(e){await Promise.allSettled(u.map((e=>r.proxyDelete(`/api/projects/${t.projectId}/check-commands/${e.commandId}`).catch((t=>h.warn("Rollback delete after batch question failure",{commandId:e.commandId,error:(0,l.getErrorMessage)(t)}))))))
+for(const t of u)i.push({name:t.proposal.name,reason:(0,l.getErrorMessage)(e)})}h.info("Register submitted commands for approval",{total:e.commands.length,submitted:p.length,skipped:i.length}),f({success:!0})
+const m=[`## Submitted ${p.length} command${1===p.length?"":"s"} for approval${i.length?`, ${i.length} skipped`:""}`]
+return p.length>0&&(m.push("","### Pending approval"),m.push(...p.map((e=>`- **${e}**`))),m.push("","The user will see one approval notification per command. Approved commands become runnable; denied ones are removed.")),i.length>0&&(m.push("",`### Skipped (${i.length})`),m.push(...i.map((e=>`- **${e.name}** \u2014 ${e.reason}`)))),m.push("",'Use `commands({ operation: "list" })` to see status.'),{content:[{type:"text",text:m.join("\n")}],...(0,c.alchemyMeta)({kind:"register-commands"})}}if("remove"===y){if(!e.name?.trim())return f({success:!1,error:"missing_name"}),{content:[{type:"text",text:"Error: `name` is required when removing a command."}],isError:!0}
+const n=w.find((t=>t.name.toLowerCase()===e.name.toLowerCase()))
+if(!n)return f({success:!1,error:"not_found"}),{content:[{type:"text",text:`Command "${e.name}" not found.`}],isError:!0}
+try{return await r.proxyDelete(`/api/projects/${t.projectId}/check-commands/${n.id}`),h.info("Removed command",{name:n.name,id:n.id}),f({success:!0}),{content:[{type:"text",text:`Removed command **${n.name}**.`}]}}catch(e){return f({success:!1,error:"remove_failed"}),{content:[{type:"text",text:"Failed to remove command: "+(0,l.getErrorMessage)(e)}],isError:!0}}}if(!e.name){const e=b.map((e=>e.name)).join(", ")
+return f({success:!1,error:"missing_name"}),{content:[{type:"text",text:"Error: `name` is required when running a command.\n\nAvailable commands: "+(e||"(none configured)")}],isError:!0}}const k=b.find((t=>t.name.toLowerCase()===e.name.toLowerCase()))
+if(!k){const t=b.map((e=>e.name)).join(", ")
+return f({success:!1,error:"not_found"}),{content:[{type:"text",text:`Command "${e.name}" not found.\n\nAvailable commands: ${t||"(none configured)"}`}],isError:!0}}let v=e.args?`${k.command} ${e.args}`:k.command
+e.grep&&(v=`${v} 2>&1 | grep -i ${JSON.stringify(e.grep)}`)
+const C=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.basePath||t.basePath,_=k.cwd?s.default.resolve(C,k.cwd):C,E=s.default.join(C,a.ALCHEMY_DIR_NAME,"command-logs"),S=`${k.name.replace(/[^a-zA-Z0-9._-]/g,"_")}-${Date.now()}`,q=s.default.join(E,S+".log")
+let T=null
+try{i.default.mkdirSync(E,{recursive:!0}),T=i.default.createWriteStream(q,{flags:"w"}),T.write(`# ${(new Date).toISOString()} starting: ${v}\n# cwd: ${_}\n# timeout: ${k.timeout||60}s\n\n`)}catch(e){h.warn("Failed to open command log file",{logPath:q,error:(0,l.getErrorMessage)(e)})}h.info("Running command",{name:k.name,command:v,cwd:_,configuredCwd:k.cwd,logPath:q})
+const x=await(0,n.runTrackedShellCommand)(v,{cwd:_,timeoutMs:1e3*(k.timeout||60),env:{...process.env,FORCE_COLOR:"0"},onChunk:T?(e,t)=>{T?.write(t)}:void 0},{id:S,name:k.name,sessionId:g?.sessionId,logPath:q})
+T&&(T.write(`\n# exit: ${x.exitCode}${x.timedOut?" (timed out)":""}\n`),T.end())
+const{stdout:P,stderr:R,exitCode:M,timedOut:$}=x,{output:j,truncatedNote:O,logFooter:D}=(0,o.formatCommandOutput)(P,R,{invocationId:S}),A=$?"TIMEOUT":null
+let F
+if(m)try{const e=await m.createToolRecord({projectId:t.projectId,type:"run-command",metadata:{name:k.name,command:v,exitCode:M,timedOut:$,status:$?"timeout":0===M?"success":"failed",timestamp:(new Date).toISOString()}})
+F=e?.id}catch(e){h.debug("Failed to create tool record for command run",{error:(0,l.getErrorMessage)(e)})}return f({success:!0}),{content:[{type:"text",text:`## ${k.name}${A?` \u2014 ${A} (killed after ${k.timeout}s)`:""}\n\`\`\`\n$ ${v}\n${j}\n\`\`\`${O}\n\nExit code: ${M}\n${D} (pass to read_files or search)`}],...(0,c.alchemyMeta)({kind:"run-command",toolRecordId:F})}}catch(e){return f({success:!1,error:"api_error"}),{content:[{type:"text",text:"Failed to run command: "+(0,l.getErrorMessage)(e)}],isError:!0}}}
+const n=t(4600),o=t(1816),s=r(t(6928)),i=r(t(9896)),a=t(4139),c=t(2272),l=t(8824),d=t(6688),u=t(9414)},4466(e,exports,t){"use strict"
 function r(e,t){return`${e}#${t.toString().padStart(2,"0")}`}async function n(e,t,n,s){if(exports.TASK_REF_PATTERN.test(e))return e
 const i=e.match(exports.TASK_REF_SHORT_PATTERN)
 if(!i)return e
@@ -2543,7 +2544,7 @@ if("interactive"===n)return"interactive"}catch(e){t.warn("Failed to read project
 if("ask"===e||"interactive"===e){h.info("Returning planner choice pending",{planningMode:e})
 try{const e=u?.sessionId||o.sessionIdentity.getIdentity()?.sessionId,t=d?.getSessionMessageClient()
 if(t&&e){const r=await o.sessionIdentity.getParentSessionId(e,d,h),n=c.description||c.prompt
-await t.createQuestion({fromSessionId:e,toSessionId:r||void 0,questionType:"alternatives",question:"Planning requested: "+n,options:[{id:"auto",label:"Auto Plan",description:"Spawn an autonomous planner agent"},{id:"manual",label:"Manual Plan",description:"Open the interactive plan editor"},{id:"cancel",label:"Skip",description:"Dismiss this planning request"}],context:c.prompt,category:"action-required",priority:"high"}),h.info("planner-request: notification created",{fromSessionId:e})}else h.warn("planner-request: skipping notification",{hasClient:!!t,hasCallerSessionId:!!e})}catch(e){h.warn("planner-request: failed to create notification",{error:(0,n.getErrorMessage)(e)})}f={content:[{type:"text",text:"Planning request submitted. The user will choose the planning approach. This is non-blocking \u2014 continue with your other work."}],...(0,i.alchemyMeta)({pendingAction:{kind:"planner-choice",payload:{prompt:c.prompt,description:c.description}}})}
+await t.createQuestion({fromSessionId:e,toSessionId:r||void 0,questionType:"alternatives",question:"Planning requested: "+n,options:[{id:"auto",label:"Auto Plan",description:"Spawn an autonomous planner agent"},{id:"manual",label:"Manual Plan",description:"Open the interactive plan editor"},{id:"cancel",label:"Skip",description:"Dismiss this planning request"}],context:{type:"planner-request",prompt:c.prompt,description:c.description},category:"action-required",priority:"high"}),h.info("planner-request: notification created",{fromSessionId:e})}else h.warn("planner-request: skipping notification",{hasClient:!!t,hasCallerSessionId:!!e})}catch(e){h.warn("planner-request: failed to create notification",{error:(0,n.getErrorMessage)(e)})}f={content:[{type:"text",text:"Planning request submitted. The user will choose the planning approach. This is non-blocking \u2014 continue with your other work."}],...(0,i.alchemyMeta)({pendingAction:{kind:"planner-choice",payload:{prompt:c.prompt,description:c.description}}})}
 break}const r="auto-planner"
 if(h.info("Spawning planner",{planningMode:e,agent:r}),f=await(0,s.handleSpawn)({agent:r,prompt:c.prompt,title:c.description},t,h,d,u),!f.isError&&f.content.length>0){const t=f.content[0].text
 f.content[0].text=`Planning mode: ${e} (agent: ${r}). Planning is running in the background \u2014 continue with your other work.\n${t}`}break}case"check-status":f=await(0,s.handleCheckStatus)(g,t,h,d)
@@ -3547,7 +3548,7 @@ if(!s)return{content:[{type:"text",text:"\u274c No project context available. Pl
 const i=e.name.replace(/\.md$/i,""),a=`${d.filenamePrefix}${i}.md`,l=o.getDocumentClient(),p=await l.listDocuments({type:d.docType,filename:a,limit:1,offset:0})
 if(p&&p.length>0)return{content:[{type:"text",text:`\u274c A ${d.label} with filename "${a}" already exists (${p[0].localId||p[0].id}). Choose a different name.`}],isError:!0}
 const m=u?{criteria:e.criteria||"",status:n.QUEST_STATUS_OPEN,tickIntervalSeconds:e.tickIntervalSeconds??n.QUEST_DEFAULTS.tickIntervalSeconds,maxInFlight:e.maxInFlight??n.QUEST_DEFAULTS.maxInFlight,maxPerDay:e.maxPerDay??n.QUEST_DEFAULTS.maxPerDay,minIterations:e.minIterations??n.QUEST_DEFAULTS.minIterations}:void 0,g=await l.createDocument(void 0,{filename:a,content:e.content,type:d.docType,...m&&{metadata:m},...c&&{cliOrigin:c}}),f=g.localId||g.id,y=g.id
-let w=!1
+if(c?.sessionId)try{await o.proxyPost(`/api/projects/${s}/session-plan-associations`,{opencodeSessionId:c.sessionId,documentId:y})}catch(e){h.warn("Failed to create session-plan association",{error:(0,r.getErrorMessage)(e)})}let w=!1
 if(d.canBeActivePlan)try{const e=o.getProjectClient(),t=await e.getProject(s)
 t&&!t.activePlanId&&(await e.updateProject(s,{activePlanId:y}),w=!0,h.info("Auto-set as active plan",{planId:f,projectId:s}))}catch(e){h.warn("Failed to auto-set active plan",{error:(0,r.getErrorMessage)(e)})}return h.info(""+d.headingCreated,{planId:f,filename:a}),{content:[{type:"text",text:`\u2705 **${d.headingCreated}**\n\n**${d.idLabel}:** ${f}\n**Filename:** ${a}\n**Created:** `+new Date(g.createdAt).toLocaleString()+(w?"\n\n\u{1f4cc} _Automatically set as the active project plan._":"")}]}}catch(e){return h.error("Failed to "+d.errorVerb,{error:(0,r.getErrorMessage)(e)}),{content:[{type:"text",text:`\u274c **Failed to ${d.errorVerb}:** ${(0,r.getErrorMessage)(e)}`}],isError:!0}}}
 const r=t(8824),n=t(3416)},6688(e,exports,t){"use strict"
@@ -4429,21 +4430,28 @@ if(r.startsWith("R")){const e=t[1],n=t[2],o=_.get(n)||{additions:0,deletions:0,b
 Number.isFinite(s)&&(i.similarity=s),o.binary&&(i.binary=!0),E.push(i)}else{const e=t[1],n=_.get(e)||{additions:0,deletions:0,binary:!1},o={path:e,status:"A"===r?"added":"D"===r?"deleted":"modified",additions:n.additions,deletions:n.deletions}
 n.binary&&(o.binary=!0),E.push(o)}}return E.sort(((e,t)=>e.path.localeCompare(t.path))),u({success:!0}),l.incrementCounter("request_diff_total",1,{format:"summary"}),r({baseSha:b,headSha:I,branch:y?null:w,files:E})}catch(e){return d.error("request_diff failed",{error:e instanceof Error?e.stack:e+""}),u({success:!1}),l.incrementCounter("request_diff_errors",1),n("request_diff failed: "+(0,i.getErrorMessage)(e))}}
 const o=t(3807),s=t(2272),i=t(8824),a=5e5},8291(e,exports,t){"use strict"
-var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}}
-Object.defineProperty(exports,"__esModule",{value:!0}),exports.validateAndNormalizePath=function(e,t){let r=e.replace(/\\/g,"/")
-const s=function(e){return e.workspaceManager?e.workspaceManager.getCurrentContext(e.currentSessionId).basePath:e.basePath}(t)
-if(n.default.isAbsolute(r)){const e=n.default.normalize(r)
-if(e.startsWith(s))r=n.default.relative(s,e),r=r.replace(/\\/g,"/")
-else{const i=t.basePath
-if(!i||!e.startsWith(i)){const r=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.mode||"unknown",n=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.requestId||"none"
-throw(0,o.createValidationError)(`File path is outside the allowed directory\n  Requested path (absolute): ${e}\n  Allowed base (current workspace): ${s}\n  Allowed base (main repo): ${i||"N/A"}\n  Workspace mode: ${r}\n  Current request: ${n}\n  Note: Use relative paths (e.g., 'src/file.txt') instead of absolute paths`)}r=n.default.relative(i,e),r=r.replace(/\\/g,"/")}}if(function(e){const t=e.replace(/\\/g,"/").replace(/^\//g,"")
-for(const e of a)if(t===e||t.startsWith(e+"/"))return!0
-for(const e of c)if(t===e||t.endsWith("/"+e))return!0
-return!1}(r))throw(0,o.createValidationError)(`Access to '${r}' is not allowed - this directory contains system files`)
-const i=n.default.resolve(s,r)
-if(!i.startsWith(s)){const e=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.mode||"unknown",n=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.requestId||"none"
-throw(0,o.createValidationError)(`File path is outside the allowed directory\n  Requested path: ${r}\n  Resolved to: ${i}\n  Allowed base: ${s}\n  Workspace mode: ${e}\n  Current request: `+n)}return{normalizedPath:r,fullPath:i}},exports.validateTaskIdFormat=function(e,t,r,n){e&&(0,i.isTaskRef)(e)||(t.warn("Invalid task ID format provided",{taskId:e}),r.incrementCounter(n+"_invalid_task_format",1))}
-const n=r(t(6928)),o=t(9860),s=t(4139),i=t(4466),a=[s.ALCHEMY_DIR_NAME,".opencode",".git"],c=[".mcp-server.lock"]},8309(e,exports,t){"use strict"
+function r(e){return e.workspaceManager?e.workspaceManager.getCurrentContext(e.currentSessionId).basePath:e.basePath}var n=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}}
+Object.defineProperty(exports,"__esModule",{value:!0}),exports.validateAndNormalizePath=function(e,t){const n=function(e,t){if(!e.startsWith("log:"))return null
+const r=e.slice(4).replace(/^\/+/,""),n=r?`${i.ALCHEMY_DIR_NAME}/command-logs/${r}.log`:i.ALCHEMY_DIR_NAME+"/command-logs"
+if(r&&(!/^[a-zA-Z0-9._-]+$/.test(r)||r.includes("..")))throw(0,s.createValidationError)(`Invalid log id in '${e}'. Expected alphanumeric characters, dots, underscores, hyphens.`)
+const a=o.default.resolve(t,n)
+if(!a.startsWith(t+o.default.sep))throw(0,s.createValidationError)("Log path resolves outside the workspace: "+e)
+return{normalizedPath:n,fullPath:a}}(e,r(t))
+if(n)return n
+let a=e.replace(/\\/g,"/")
+const d=r(t)
+if(o.default.isAbsolute(a)){const e=o.default.normalize(a)
+if(e.startsWith(d))a=o.default.relative(d,e),a=a.replace(/\\/g,"/")
+else{const r=t.basePath
+if(!r||!e.startsWith(r)){const n=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.mode||"unknown",o=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.requestId||"none"
+throw(0,s.createValidationError)(`File path is outside the allowed directory\n  Requested path (absolute): ${e}\n  Allowed base (current workspace): ${d}\n  Allowed base (main repo): ${r||"N/A"}\n  Workspace mode: ${n}\n  Current request: ${o}\n  Note: Use relative paths (e.g., 'src/file.txt') instead of absolute paths`)}a=o.default.relative(r,e),a=a.replace(/\\/g,"/")}}if(function(e){const t=e.replace(/\\/g,"/").replace(/^\//g,"")
+for(const e of c)if(t===e||t.startsWith(e+"/"))return!0
+for(const e of l)if(t===e||t.endsWith("/"+e))return!0
+return!1}(a))throw(0,s.createValidationError)(`Access to '${a}' is not allowed - this directory contains system files`)
+const u=o.default.resolve(d,a)
+if(!u.startsWith(d)){const e=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.mode||"unknown",r=t.workspaceManager?.getCurrentContext(t.currentSessionId)?.requestId||"none"
+throw(0,s.createValidationError)(`File path is outside the allowed directory\n  Requested path: ${a}\n  Resolved to: ${u}\n  Allowed base: ${d}\n  Workspace mode: ${e}\n  Current request: `+r)}return{normalizedPath:a,fullPath:u}},exports.validateTaskIdFormat=function(e,t,r,n){e&&(0,a.isTaskRef)(e)||(t.warn("Invalid task ID format provided",{taskId:e}),r.incrementCounter(n+"_invalid_task_format",1))}
+const o=n(t(6928)),s=t(9860),i=t(4139),a=t(4466),c=[i.ALCHEMY_DIR_NAME,".opencode",".git"],l=[".mcp-server.lock"]},8309(e,exports,t){"use strict"
 var r,n=this&&this.__createBinding||(Object.create?function(e,t,r,n){void 0===n&&(n=r)
 var o=Object.getOwnPropertyDescriptor(t,r)
 o&&!("get"in o?!t.__esModule:o.writable||o.configurable)||(o={enumerable:!0,get(){return t[r]}}),Object.defineProperty(e,n,o)}:function(e,t,r,n){void 0===n&&(n=r),e[n]=t[r]}),o=this&&this.__setModuleDefault||(Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t}),s=this&&this.__importStar||(r=function(e){return r=Object.getOwnPropertyNames||function(e){var t=[]

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "alchemylab",
-  "version": "1.4.3",
+  "version": "1.4.4",
   "private": false,
   "description": "AlchemyLab - agentic coding IDEm",
   "author": "Testfire Software",