akm-cli 0.9.30 → 0.9.31

package/docs/architecture/improvement.md

@@ -0,0 +1,440 @@
+# Architecture: The Improvement Loop
+
+## Purpose and boundary
+
+The improvement loop turns outcomes into ranking changes and reviewable proposals. This page is the
+architecture-level reference for that loop — how a feedback signal becomes a
+ranking change, how ranking and usage evidence become a proposal, and the
+boundary around what AKM is allowed to write without a human or policy
+reviewing the diff first.
+
+The loop itself:
+
+```text
+agent selects capability -> agent records outcome -> AKM updates utility and analyzes evidence ->
+AKM creates a proposal -> human or policy reviews the diff -> accept / reject / revert
+```
+
+The user-facing command surface for this loop (`akm feedback`, `akm log`,
+`akm improve`, `akm proposal ...`) is documented in
+[Improve the Library](../guides/improve-the-library.md) and
+[CLI Reference](../reference/cli.md). This page covers the implementation
+detail behind those commands: how utility moves, how strategies configure
+what runs, what the autonomy gate does and does not allow, how sync happens
+at the end of a run, and how session extraction fits in.
+
+**Boundary:** `akm improve` (and its subprocesses — reflect, distill,
+consolidate) never write asset files directly. The only durable artifact they
+produce is a proposal row in `state.db`. The narrow set of writes that *are*
+allowed to happen without review is enumerated below, under
+[The autonomy gate](#the-autonomy-gate);
+everything else routes through `akm proposal accept`.
+
+## Components
+
+- **Utility policy** (`src/indexer/feedback/utility-policy.ts`) — pure
+  domain math that turns accumulated feedback counts into a new utility
+  score. No database access; unit-testable in isolation.
+- **Strategies** (`src/commands/improve/improve-strategies.ts`,
+  `src/assets/improve-strategies/*.json`) — named presets that decide which
+  improve processes run and with what engine/model/limits.
+- **Autonomy gate** (`src/commands/improve/autonomy-gate.ts`) — downgrades
+  the handful of processes that would otherwise mutate assets without review,
+  unless `experimental.improveAutonomy` is explicitly set.
+- **Reflect / distill / consolidate subprocesses** — the improve pipeline's
+  proposal generators, invoked per asset (reflect, distill) or across the
+  whole memory corpus (consolidate). See
+  [Improve Workflow](internals/improve-workflow.md) for the full per-step
+  reference and flow diagram.
+- **Proposal queue** (`state.db`) — written by `createProposal` (reflect,
+  distill, consolidate's promote operations, and the other proposal producers)
+  and by `createRetireProposal` (the pair pass's retire proposals).
+- **Auto-sync** — the end-of-run commit/push step for git-backed bundles.
+- **Session extraction** (`akm proposal extract`) — a separate entry point
+  that mines coding-agent session transcripts for durable insights and queues
+  them the same way.
+
+## Data flow
+
+1. An agent uses a capability and calls `akm feedback <ref> --positive|--negative`.
+   `--negative` is for content that is wrong or stale; a note that simply did
+   not fit the agent's task gets no feedback.
+   `--negative --reason "<what is wrong and what should change>"` flags the
+   asset: the next improve run may repair its frontmatter from the reason.
+   `--replace`/`--with`/`--source` attach an exact fix of its text once the
+   agent has verified the correct fact, which akm checks at once and queues as
+   a `feedback` proposal.
+   `--positive` records that the asset helped (it raises its ranking) and does
+   not trigger a rewrite.
+2. The feedback event is appended to `state.db`, and the asset's utility
+   score is updated immediately via the bounded-step formula (below) — no
+   reindex required.
+3. `akm improve` selects assets from the one bundle it writes to. A rewrite
+   (reflect) is planned only for an asset with negative feedback in the last
+   30 days that is newer than the stage's last attempt, or for an explicit ref;
+   a positive or note-only signal never plans one, and neither does a negative whose exact fix has since been accepted as a `feedback` proposal. Distill reads any feedback
+   on a memory in that window, but skips a memory flagged wrong and not edited
+   since: a negative feedback in the window judged the body it still has (or,
+   recorded without that body's hash, is newer than its file's last write). It
+   also skips a memory whose only feedback in the window is positive with no
+   reason or note, which gives the writer nothing to distil (10 of the 11
+   lessons made from such memories were rejected). Unless
+   `--require-feedback-signal` is set, the
+   fallback lanes (high salience, and proactive maintenance where the strategy
+   enables it) pick what the retrieval scope below admits, for scoring only:
+   they plan nothing, so improve does not rewrite assets on a proactive
+   cadence. It ranks the selected assets by salience, applies the limit, then
+   runs whichever processes the selected strategy enables against each one (see
+   [Improve Workflow](internals/improve-workflow.md#ledger-pre-filter-signal-delta)).
+4. Reflect and distill each emit at most one proposal per asset per run;
+   consolidate runs two passes alongside each other — the promote pass emits
+   a proposal turning a memory into knowledge (and, once accepted, retires
+   the source memory) unless a neighbouring `knowledge/` doc already covers
+   the memory, and it offers a memory whose promotion was accepted or
+   rejected, or that the model judged and left alone, again only after the
+   memory's body changes; the pair pass judges
+   near-duplicate and superseding pairs in the memory tier and emits a
+   `retire` proposal for the `duplicate`/`subsumed`/`supersedes` classes;
+   `overlap`, `unrelated` and `contradicts` are recorded as
+   `judged_no_action` with no proposal. The judge first lists the durable
+   claims each side alone holds, and a side with any listed claim is never
+   retired. Knowledge is never retired in favour of a memory: when the judge would
+   do that, the memory is retired in favour of the note if the memory lists no claim of its own,
+   and the pair is left alone otherwise. A retirement whose retired side lists nothing (a duplicate: neither
+   side), confirmed by a second look, is staged for the triage drain to accept; every other
+   retirement waits for a person.
+5. Every emitted proposal lands in the `proposals` table in `state.db`,
+   status `pending`.
+6. A human (via `akm proposal diff` / `accept` / `reject`) or a configured
+   drain policy (`akm proposal drain`) reviews and resolves each proposal. A
+   rejection is not final: `akm proposal reopen` puts a rejected proposal back
+   to `pending`.
+7. `akm proposal accept` promotes the proposal into the bundle; `akm proposal
+   revert` restores the prior content from the backup captured at promotion
+   time, if the proposal overwrote an existing asset. When the bundle is a git
+   repository (a `.git` directory, whatever its source kind), each accept is
+   committed as it happens, locally and with exactly the paths it wrote or
+   removed: `akm accept: <generator> <proposal-id-8> <ref>`. A retirement's
+   archived copy and tombstone, and the source memory a consolidate promotion
+   retires, go in the same commit. A commit that fails warns and the accept
+   stands.
+8. For a git-backed bundle, `akm improve`'s end-of-run auto-sync commits the
+   rest of the run's changes as a single batch and pushes (see below).
+
+## Current decisions
+
+### Utility scoring
+
+Utility moves by the MemRL bounded-step EMA formula (arXiv:2601.03192),
+implemented in `computeNextUtility` (`src/indexer/feedback/utility-policy.ts`):
+
+```text
+reward   = weighted average of positive (1.0) and negative (0.0) feedback in the batch
+nextUtil = clamp(currentUtil + FEEDBACK_LR * (reward - currentUtil), 0, 1)
+```
+
+`FEEDBACK_LR` is `0.1`, so a single feedback batch moves utility by at most
+0.1 in either direction regardless of how lopsided the batch is — `reward` is
+a proportion of the counts, not their magnitude. When a previously
+high-utility asset (utility ≥ 0.5) crosses back below 0.5, the update is
+flagged as a review-threshold crossing so callers can escalate it. Decay is
+time-proportional rather than tied to index frequency, and usage history
+(and the utility it drives) is preserved across schema resets and full index
+rebuilds — see [Architecture: Utility Scoring](architecture.md#utility-scoring)
+for the storage-level summary.
+
+### Strategy inheritance
+
+Improve presets live under `improve.strategies` (config) and the built-in
+set: `default`, `quick`, `thorough`, `consolidate`, `catchup`,
+`reflect-distill`, and `proactive-maintenance`
+(`src/assets/improve-strategies/*.json`). Selection
+order is `--strategy`, then `defaults.improveStrategy`, then `default`.
+
+Resolution is a two-step deep merge (`resolveImproveStrategy`): a named
+built-in strategy is first merged onto the built-in `default` strategy, then
+any user-defined override for that same name (under `improve.strategies` in
+config) is merged on top. So a strategy — built-in or user-defined — that
+omits a field, or an entire process block, inherits it from `default`; an
+explicit `enabled: true`/`false` in the more specific layer always wins. This
+is why, for example, `proactiveMaintenance` stays off in `default` and
+`reflect-distill`, but a preset that doesn't mention it at all still inherits
+that "off" rather than defaulting to on.
+
+### Retrieval scope
+
+Improve reworks only what gets read (#986). Fresh feedback and an explicit ref
+scope (`akm improve skills/x`) are usage evidence of their own. Every other
+pick — the proactive-maintenance and high-salience lanes (which only score what
+they pick), and the memories consolidation judges — must be in the retrieval
+scope (`src/commands/improve/retrieval-scope.ts`):
+
+- **Retrieved:** a user-attributed `search`, `curate` or `show` returned the
+  asset, or user `feedback` named it, inside the window. A hit on a
+  `.derived` memory counts for its parent. Machine traffic (`improve`, `task`,
+  `audit`) does not count.
+- **New material:** the file was written inside the window and no improve
+  stage has processed the asset — no `improve_ledger` row and no proposal from
+  any source but a capture (`extract`, `propose`, `remember`, `import`).
+
+The window is the usage log's retention (`USAGE_EVENT_RETENTION_DAYS`, 90
+days): the log keeps nothing older, and a shorter window would drop assets
+read less often than it. There is no config key. Refs left out are counted by
+the plan's `retrieval` gate and reported as the `not_retrieved` skip reason;
+consolidation reports them in its warnings. A bulk rewrite of old files
+(a rename, a lint fix, a fresh clone) makes them look new until improve has
+processed each once.
+
+### Quality judge
+
+Every reflect revision and every distilled lesson is scored by a judge before it
+is queued (`runQualityJudge`, `src/commands/improve/stage.ts`): one call at
+temperature 0, each criterion scored 1 to 5, failing closed (no runner, a
+timeout, or an unparseable or incomplete reply never passes content and goes to
+review). A reflect revision is scored on three criteria:
+
+- **need**: does it fix a concrete problem in the source: something the
+  feedback reports as wrong or missing, a factual error, or broken, garbled,
+  truncated or missing text (frontmatter fields included)? A rewrite that only
+  rewords, restates or reformats a correct source, or adds headings, an
+  introduction or a table of contents, scores 1 or 2.
+- **preservation**: does it keep every concrete fact, identifier, command, path,
+  number and example, without truncation?
+- **quality**: is it coherent and accurate, with nothing the source or the
+  feedback does not support?
+
+Content passes only when **every** criterion scores 4 or more (a lesson's
+grounding is judged apart, see
+[distill](internals/improve-workflow.md#distill-akmdistill)); a mean of 3.5
+passed it before. A verdict that does not pass is a review when its mean is 2.5
+or more and a rejection below that. The rubric and the rule were chosen on 90
+labelled real rewrites, where judging on the mean let rewrites that only
+reworded a correct asset through.
+
+A reflect pass is stamped on the proposal as a `staged` decision from the
+`quality-gate` with the per-criterion `scores` and the judge's `judgeReason`;
+both stay on the proposal when the drain accepts it, so a later audit can read
+why it passed (`akm proposal show --format json`). A distill pass is not staged:
+the lesson or promotion is minted `deferred` for a person (reason
+`distill-review`, same gate) with the same `scores` and `judgeReason`, and the
+triage drain and its judgment tier leave it alone. On 2026-10-05 the gate had
+staged 12 lessons and 10 were bad (they restated the memory, claimed what it
+does not say, or filed a dated status as a lesson), and no score separated them
+from the two good ones. Reflect revises only an asset's
+`description`, `when_to_use` and title, never its body. On 396 labelled edits,
+those that fixed a frontmatter defect and left the body alone were good 24
+times in 26, and those that also rewrote the body were bad 175 times in 224.
+
+### Retrieval regression gate
+
+Reflect refuses a revision of an existing asset that grades lower on the
+asset's own retrieval queries (#722, `src/commands/improve/retrieval-gate.ts`).
+After the quality judge passes, up to five distinct user `search`/`curate`
+queries that returned the asset (envelopes, the stash README line and inputs
+over 2,000 characters dropped) are each graded 0–3 against the old and the new
+content with the retrieval eval's prompt, `retrieval-relevance-judge.md`, and
+its document shape: type, ref, name, description and the first 1,500 body
+characters. A lower mean for the new content is a `quality_rejected` refusal
+with the reflect rejection window. A grade that cannot be obtained refuses the
+rewrite, as the quality judge fails closed. An asset with no such queries is
+not graded.
+
+The gate exists because it was measured first. Of 60 accepted reflect rewrites
+(since 2026-07-01, stratified by lane) judged this way, 14 graded lower (23%,
+95% CI 14–35%) and 12 higher. Grading the same content twice flipped 11 of 174
+query grades, which puts 3 of 60 rewrites in the "lower" bucket by noise
+alone. The threshold for building it was fixed before judging: a lower bound of
+at least 10%.
+
+### Retirement continuity
+
+Before the consolidate pair pass mints a `retire` proposal (rule R3,
+`src/commands/improve/consolidate/continuity-check.ts`), it replays up to five
+of the retired asset's own past `search`/`curate` queries
+(`loadRetrievalQueries`, the same cleaned set `../retrieval-gate.ts` replays
+for the retrieval regression gate — boilerplate, harness/tool envelopes,
+pastes and near-duplicates dropped before replay, S3a) through akm's own
+search, in-process — the ranking a user actually gets, no LLM. For every
+query where the retired asset ranked in the top 10, the successor must too
+(N2: compared directly — search itself returns at most the top 10 hits, so
+"ranked" and "absent from those hits" are the only two states there are, no
+generic rank-change-report abstraction needed). An asset with no recorded
+queries is not checked at all, and neither is a pair whose two bodies are
+content-identical once whitespace is collapsed (S3b) — search's own
+content-dedupe already hides the successor behind the retired asset for
+every such query, so a "successor missing" finding there would not be a
+real risk.
+
+A failing pair still mints — the check flags, it never blocks — but the
+proposal carries `continuityRisk` in its retirement metadata: the failing
+query count and the rank pairs, visible in `akm proposal show`/`list`/`diff`. A
+flagged proposal is excluded from every bulk accept path (`accept
+--generator …`, with or without `--yes`); a person can still accept it by id.
+Bulk *reject* is unaffected, since declining a flagged proposal is always the
+safe direction.
+
+A query that never ran (the search call threw) or that fell back to
+keyword-only ranking instead of the real one (`mode: "fts-fallback"` — most
+often a down or unreachable embedding endpoint) is "unverified": it is never
+compared for rank at all, and on its own it is enough to set
+`continuityRisk` (`unverifiedQueries` alongside the usual `ranks`), so an
+endpoint outage reads as "risk unknown," never as the silent "no risk
+found" a search that quietly used a degraded ranking would otherwise
+produce. Once any query in a pair-pass run falls back, every later query in
+that same run skips the semantic attempt entirely and goes straight to
+keyword-only — a dead endpoint costs one failed attempt for the whole run,
+not one per remaining query.
+
+This check replaces the old per-run forgetting-safety lane (a one-time WS-1
+cutover guard that compared improve's own salience ranking before and after
+each run). The 30-day event window showed it made no pick the signal-delta
+lane or the retrieval scope would not also have made, and it protected
+`asset_salience.rank_score`, which only improve itself ever read — a rank drop
+could not hide anything from search. `forgetting-safety` stays a valid
+`eligibilitySource`/event-type value so old proposals and events still decode,
+but nothing assigns or emits it any more.
+
+### Dry-run planning boundary
+
+Dry and live improve runs call the same selectors for signal-delta eligibility,
+the fallback lanes (proactive maintenance and high salience, which score and
+plan nothing), the retrieval scope, salience ranking, disk presence, and the
+final cap, and resolve the bundle they plan the same way: `--bundle`, else
+`defaultWriteTarget`, else the working bundle (`AKM_BUNDLE_DIR`, else
+`defaultBundle`). Each invocation reports a best-effort observation assembled
+while it runs; it is not an atomic cross-store snapshot, a reservation, or a
+durable frozen plan. A later live invocation re-inspects mutable index, state,
+filesystem, and session-log inputs and can therefore differ from an earlier
+dry preview. Given equivalent observed inputs, both paths produce the same
+selection. The public schema-v2 result projects the observation as `plan`: raw
+in-scope count, each gate's removals, configured and effective limits, final
+ranked refs with lane attribution, proactive due statistics, consolidation
+pool/delta/minimum gates and chunk estimate, maintenance-stage decisions,
+triage mode/caps, and the read-side index snapshot status. `plannedRefs` means
+the effective post-limit work set in both modes.
+
+The dry path stops at that projection boundary. It may read indexed assets,
+the filesystem, and an existing `state.db`, but opens state read-only and does
+not create it when absent. It does not acquire the improve lock or write the
+index, state, events, proposals, assets, cache, sync journal, or persisted run
+result, and it never dispatches an LLM. SQLite inputs are inspected through
+disposable main/WAL copies so even a held source SHM file is not touched.
+Consolidation pool inspection and the extract `minNewSessions` gate use shared
+zero-LLM selectors, while live execution re-inspects mutable inputs immediately
+before dispatch. A missing index or one without the current `entries` table
+yields an explicit empty `plan.snapshot` (`missing` or `incompatible`) rather
+than creating or migrating the database.
+
+`plan.limits.effective` is the cap on the refs a run dispatches, resolved from
+`--limit`, then the reflect process's `limit`, then the strategy's `limit`. The
+replay lane is retired, so `additiveReplayAllowance` is always `0` (the field
+stays so the schema-v2 plan shape keeps validating) and a finite `totalCeiling`
+equals `effective`. When the run is unbounded, `totalCeiling` is omitted.
+
+### The autonomy gate
+
+`akm improve` runs by default and is review-first: reflect, distill, extract
+candidates, validation, and proactive-maintenance selection are proposal-only
+and never write assets directly regardless of this gate.
+Three specific lanes *would* mutate assets without review and are downgraded
+unless `experimental.improveAutonomy` is explicitly set to `true`:
+
+| Lane | What it does when enabled | With autonomy off |
+| --- | --- | --- |
+| `memoryInference` | Writes `.derived.md` children and rewrites parent frontmatter | disabled |
+| memory cleanup | Belief-state frontmatter rewrites, archive moves | analyzed but not applied |
+| `triage` `applyMode: "promote"` | Auto-accepts queued proposals into the bundle | downgraded to `queue` — triage still runs, it just does not auto-accept |
+
+Every downgrade is reported, not silent: it warns on stderr, appends an
+`improve_skipped` event with `reason: "autonomy_gated"`, and is counted in
+`akm health`'s improve skip-reason summary. Consolidation stays enabled with
+autonomy off: both its passes only ever emit a reviewable proposal. The one
+pair-pass `retire` proposal `triage` `applyMode: "promote"` accepts is a
+retirement the pair pass staged (nothing unique to the retired side, confirmed
+by a second look, no continuity risk); every other one waits for `akm proposal accept`. An absent `experimental`
+section, an absent key, and an explicit `false` all read identically as off —
+autonomy is never inferred. `akm proposal drain --promote` is a second,
+explicit promote surface independent of this gate.
+
+### Auto-sync
+
+For git-backed bundles (detected by a `.git` directory), `akm improve`
+automatically commits its changes as a single batch at the end of the run —
+the same operation as `akm sync` — and pushes if the bundle is writable, per
+the active strategy's `sync` setting. The `reflect-distill` and
+`proactive-maintenance` strategies skip sync entirely, so an interrupted run
+does not leave an uncommitted backlog. `--no-sync` disables sync for a single
+run; `--no-push` commits without pushing. Strategy sync behavior is
+configured via the `sync` block under `improve.strategies.<name>`.
+
+The sync always commits the paths it is given. A branch it cannot push (no
+upstream branch, or behind or diverged from its upstream) only skips the push,
+and the result says why: `sync.reason` reads `not pushed: ...`. A branch that is
+ahead of its upstream, as it is after the accept commits above, is pushed with
+the sync commit. A clean tree that is ahead is not pushed: the sync pushes what
+it commits.
+
+The commit is scoped by **write provenance**, not by directory: every akm write
+path records the file it mutated into a run-scoped journal
+(`src/core/write-provenance.ts`), and the end-of-run sync stages exactly the
+journaled paths that Git still reports as changed. A file someone else edits
+under a managed directory while the run is in flight is therefore left dirty for
+its author, while a file that was already dirty when the run started and was
+then rewritten by the run IS committed. Deletions are journaled like writes, so
+the final on-disk state is what lands — a path written and then reverted or
+purged produces no commit at all. The run reports its journal as
+`writtenPaths` on the improve result. Callers that supply no explicit path list
+(`akm sync`, `akm push`) keep the managed-pathspec fallback in `saveGitStash`.
+
+### Archive purge
+
+A retirement's archived bytes (`.akm/memory-cleanup/archive/<stamp>-<ref>/`)
+are not deleted at accept time — only the tombstone (`cleanup.md`) resolves
+the ref going forward. `purgeGracedArchive`
+(`src/commands/improve/memory/memory-improve.ts`) sweeps them later: run once
+at the very start of every `akm improve` invocation, deterministic, no LLM,
+before index bootstrap or triage. For a git-backed bundle, it deletes the
+archived asset file(s) — never `cleanup.md` — of every retirement whose
+tombstone `retiredAt` is more than 30 days old (`RETIRE_GRACE_DAYS`) AND
+whose archive directory is entirely git-tracked and clean (`git ls-files`
+plus `git status --porcelain -uall`, both checked once per sweep, not once
+per directory). `.git` presence alone does not guarantee a retirement was
+ever committed: an accept commits its own paths (`commitAcceptedPaths` in
+`src/core/write-source.ts`), on a `kind: "filesystem"` source with a `.git`
+directory too, but a commit that failed only warned, and a retirement accepted
+by an older akm left archived bytes sitting on disk with no commit behind them
+at all. A directory with even one untracked or modified file (the tombstone
+included) is left whole for a later sweep, so the purge only ever removes
+bytes git can already recover. Every deleted path is journaled individually,
+so the end-of-run auto-sync commits the removal the same way it commits the
+archive move itself. A bundle with no `.git` of its own has no history to
+fall back on, so its archive is left untouched — `akm health` reports its
+size and file count instead (`memory-cleanup-archive` advisory,
+`src/commands/health/archive-usage.ts`).
+
+### Session extraction
+
+`akm proposal extract` is the standalone entry point for mining coding-agent
+session transcripts (`--type claude`, `--type codex`, `--type opencode`, or
+`--auto` to iterate every harness with a detectable session-log location) into
+proposals.
+It replaced the legacy session-checkpoint hook and runs independently of
+whether a strategy's own `processes.extract` stage is enabled — no shipped
+strategy turns that improve-stage extraction on, and a direct
+`akm proposal extract --type <harness>` or `--auto` invocation is never gated
+by that toggle. Session indexing writes are additive
+(`sessions/**`), which is why they are one of the writes left deliberately
+ungated by the autonomy gate above.
+
+## See also
+
+- [Improve the Library](../guides/improve-the-library.md) — the user-facing
+  command guide for this loop
+- [Improve Workflow](internals/improve-workflow.md) — full per-step reference
+  and flow diagram for reflect/distill/consolidate
+- [Architecture](architecture.md) — system-wide architecture summary,
+  including the Utility Scoring and Writing to Sources sections
+- [Configuration Reference — Strategies](../reference/configuration.md#strategies)
+  and [Experimental opt-ins](../reference/configuration.md#experimental-opt-ins)
+- [STABILITY.md](../../STABILITY.md#akm-improve-autonomy--opt-in-in-090) — the
+  normative autonomy-gate contract

package/docs/architecture/internals/classification.md

@@ -0,0 +1,154 @@
+# Classification System
+
+akm recognizes files through **bundle adapters**. Each adapter owns a bundle
+format and exposes a `recognize()` primitive that inspects a single file (path +
+frontmatter + content) and returns an `IndexDocument` — the item's
+subdir-qualified `conceptId`, type, renderer, and metadata — or `null` if the
+adapter does not claim the file. There is no longer a global matcher registry;
+the per-format adapter is the unit of recognition.
+
+## Built-in adapters
+
+The registry is a **static frozen list** (`BUILTIN_ADAPTERS` in
+`src/core/adapter/adapters/index.ts`, exposed through
+`src/core/adapter/registry.ts`) — always populated at module load, no
+registration call required. Eleven built-ins, in probe order:
+
+| Adapter id | Format | Recognizes |
+| --- | --- | --- |
+| `website-snapshot` | Crawled website snapshot bundle (read-only) | snapshot pages |
+| `agent-skills` | Agent-skills package (root `SKILL.md`) | skills |
+| `claude` | A `.claude/` tool directory | commands, agents, skills, settings-adjacent files |
+| `opencode` | An `.opencode/` tool directory | commands, agents, skills |
+| `dotenv` | Env-file bundle | env/secret whole-file assets (values never indexed) |
+| `akm-workflow` | Workflow-dir component | workflow programs |
+| `akm-task` | Task-dir component | scheduled task definitions |
+| `llm-wiki` | LLM Wiki bundle | a wiki root (`schema.md` + `pages/`) and its pages, raw, xrefs, citations |
+| `akm` | The classic AKM bundle layout | scripts, skills, commands, agents, knowledge, instructions, workflows, memories, lessons, env, secrets, facts, tasks, sessions |
+| `okf` | Open Knowledge Format bundle | OKF concept documents of any open type |
+| `generic-files` | Catch-all file mount | explicit configuration only — never auto-probed |
+
+`looksLikeRoot` probes run most-specific-first in the list order above; the
+first match wins and the winner is recorded per component. A root matching no
+probe falls back to `akm` (see `FALLBACK_ADAPTER_ID` in
+`src/indexer/installations.ts`).
+`generic-files` never participates in probing.
+
+Configured adapter ownership wins over probing. `akm add` records the detected
+adapter so later indexing does not reinterpret a bundle. The broad OKF probe
+also recognizes index-less typed Markdown, but strong AKM layout evidence runs
+first because AKM Markdown is an OKF-compatible superset.
+
+See [Bundle Types](../../reference/bundle-types.md) for the user-facing detail
+per adapter — conceptId/ref shape, what's indexed, `validate()` checks, and
+read/write status in 0.9.0.
+
+## Item types
+
+`type` is an open descriptive string. The core accepts every non-empty value;
+the owning adapter decides whether a value receives specialized behavior. The
+`akm` adapter emits its fourteen defined native types (`script`, `skill`,
+`command`, `agent`, `knowledge`, `instruction`, `workflow`, `memory`,
+`lesson`, `env`, `secret`, `fact`, `task`, `session`) — see
+[Bundle Types](../../reference/bundle-types.md) for the full
+purpose / agent-output table per type.
+
+`wiki` is **no longer an item type**. Multi-page wikis are a bundle *format* owned
+by the `llm-wiki` adapter, not a per-file type stamped by the classifier.
+
+## Reserved structural files
+
+`index.md` and `log.md` are reserved structural files for the `akm`, `okf`, and
+`llm-wiki` adapters. OKF defines their meaning in OKF bundles; AKM and LLM Wiki
+reserve the same names under their own format contracts. Other adapters own
+their reserved-name rules.
+
+## Adapter-owned filtering (AKM sensitive/infra abstention)
+
+Each adapter decides which walked files it claims and which it abstains on — the
+core always excludes VCS internals and symlink escapes. An OKF walk includes
+ordinary dot directories and `bin/` because those paths can identify conformant
+concepts; AKM keeps its existing cache/dot-directory hygiene. The `akm`
+adapter's `recognize` abstains (returns `null`) on its own bundle's
+non-content files, using **path/stat checks only** so the bytes of sensitive files
+are never read to make the decision:
+
+- an `env/…` `.env` file that has a sibling `.sensitive` marker;
+- anything under the frozen legacy `vaults/` directory (the `vault` type was
+  removed in 0.9.0);
+- a `secrets/` `.sensitive`/`.lock` marker, or a secret with a sibling
+  `<name>.sensitive` marker;
+- a `wikis/<name>/` root-level infrastructure file (`schema.md`/`index.md`/`log.md`).
+
+This policy previously lived in the indexer's `shouldIndexStashFile` pre-filter; it
+now lives in the adapter (`akmStashAbstains` in
+`src/core/adapter/adapters/akm-adapter.ts`), so each adapter owns its own bundle's
+filtering (owner ruling 2026-07-21).
+
+## The akm adapter's recognition signals
+
+Inside the `akm` adapter, recognition picks a winner by **specificity descending**,
+ties broken by registration order (later wins). The signals:
+
+| Specificity | Signal | Result |
+| --- | --- | --- |
+| 25 | `SKILL.md` (skill directory) | `skill` |
+| 20 | `tools` frontmatter | `agent` |
+| 19 | workflow markdown structure | `workflow` |
+| 18 | command frontmatter / `$ARGUMENTS` body placeholders | `command` |
+| 15 | immediate parent dir hint | directory-specific type |
+| 10 | ancestor dir hint | directory-specific type |
+| 8 | `model` frontmatter only | weak `agent` signal |
+| 5 | fallback markdown | `knowledge` |
+| 3 | known script extension | `script` |
+
+### Directory signals
+
+- `scripts/` → `script`
+- `skills/` → `skill`
+- `commands/` → `command`
+- `agents/` → `agent`
+- `knowledge/` → `knowledge`
+- `workflows/` → `workflow`
+- `memories/` → `memory`
+- `lessons/` → `lesson`
+- `env/` → `env`
+- `secrets/` → `secret`
+- `tasks/` → `task`
+
+### Markdown signals
+
+| Signal | Type | Specificity |
+| --- | --- | --- |
+| `tools` in frontmatter | `agent` | 20 |
+| workflow heading/step structure | `workflow` | 19 |
+| `agent` in frontmatter | `command` | 18 |
+| `$ARGUMENTS` or `$1`-`$3` in body | `command` | 18 |
+| `model` in frontmatter only | `agent` | 8 |
+| any other `.md` | `knowledge` | 5 |
+
+## Asset quality values
+
+The `quality` field marks how an item was produced. Four values are well-known:
+
+| Value | Meaning |
+| --- | --- |
+| `"generated"` | Heuristically indexed; included in default search |
+| `"curated"` | Human-authored; included in default search |
+| `"enriched"` | Retired LLM enrichment pass (0.9.17-alpha.9) ran for this item; included in default search |
+| `"proposed"` | Pending review; excluded from default search, opt-in via `--include-proposed` |
+
+Unknown string values warn once at runtime and remain searchable.
+
+## Examples
+
+| File | Winning signal | conceptId |
+| --- | --- | --- |
+| `scripts/deploy.sh` | parent dir (15) → `script` | `scripts/deploy.sh` |
+| `skills/review/SKILL.md` | `SKILL.md` (25) → `skill` | `skills/review` |
+| `commands/release.md` with `agent: coder` | command frontmatter (18) | `commands/release` |
+| `agents/reviewer.md` with `tools:` | frontmatter (20) → `agent` | `agents/reviewer` |
+| `workflows/release.md` with workflow structure | structure (19) → `workflow` | `workflows/release` |
+| `env/prod.env` | parent dir (15) → `env` | `env/prod` |
+| `secrets/deploy-token` | parent dir (15) → `secret` | `secrets/deploy-token` |
+| `docs/guide.md` | fallback (5) → `knowledge` | `knowledge/guide` |

package/docs/architecture/internals/fresh-host-rebuild-runbook.md

@@ -0,0 +1,40 @@
+# Fresh-Host Rebuild Runbook
+
+Rebuild a working akm install on a new machine. Assumes your bundle lives in a
+git remote and that a versioned `config.json` copy is committed to the bundle
+git (the 08-F1 recovery pattern — see step 3).
+
+1. **Install the CLI.** Prebuilt binary (no runtime needed):
+   `curl -fsSL https://github.com/itlackey/akm/releases/latest/download/install.sh | bash`
+   — or npm package (Node.js >= 22 required): `npm install -g akm-cli`.
+   If a working Bun >= 1.0 is also on `PATH`, the package prefers it after Node
+   bootstrap; old, unusable, or absent Bun installations fall back to Node.js.
+   The standalone binary is runtime-free.
+   (Windows: `irm https://github.com/itlackey/akm/releases/latest/download/install.ps1 | iex`.)
+2. **Confirm the binary resolves:** `akm --version`.
+3. **Restore `config.json`.** akm reads a single user config at
+   `~/.config/akm/config.json` (`%APPDATA%\akm\config.json` on Windows;
+   override with `AKM_CONFIG_DIR`). This file is gitignored on the host, so the
+   recovery source is the ONE versioned copy committed to the bundle git
+   (08-F1 pattern). Copy that file into place; it carries named `engines`,
+   `defaults.engine` / `defaults.llmEngine`, and cron-load-bearing improve
+   strategies that are otherwise unrecoverable.
+4. **Provide secrets/env.** `config.json` references API keys via `${VAR}`
+   placeholders; export those environment variables (or restore your env/secret
+   assets) so named engines and the embedding connection resolve. Never commit
+   the resolved values.
+5. **Restore the working bundle.** Clone your bundle git remote to the path
+   named by your working bundle's entry under `bundles` in the restored
+   config (`defaultBundle` selects which one; default path `~/akm`). There is
+   no top-level `stashDir` config key in 0.9 — it is retired and rejected at
+   load. If starting clean instead, run `akm setup --yes` to scaffold it.
+6. **Re-add non-git sources.** For each managed source not carried in the bundle
+   git (websites, npm packages, GitHub repos), run `akm bundle add <ref>`. Verify the
+   full set with `akm bundle list`.
+7. **Rebuild the index:** `akm index --full` (forces a complete reindex rather
+   than an incremental update).
+8. **Verify health:** `akm health` (checks runtime, artifacts, and improve
+   metrics — exits non-zero if `state.db` is missing) and `akm info` for index
+   stats and effective config.
+9. **Smoke-test discovery:** `akm search <term>` returns results, confirming the
+   index and bundle are wired correctly.