npm - ai-spector - Versions diffs - 0.7.4 → 0.7.7 - Mend

ai-spector 0.7.4 → 0.7.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (19) hide show

package/dist/cli.js +12 -2
package/dist/cli.js.map +1 -1
package/dist/core/operations/cocoindex.d.ts +26 -0
package/dist/core/operations/cocoindex.d.ts.map +1 -1
package/dist/core/operations/cocoindex.js +186 -17
package/dist/core/operations/cocoindex.js.map +1 -1
package/dist/core/operations/init.d.ts.map +1 -1
package/dist/core/operations/init.js +34 -9
package/dist/core/operations/init.js.map +1 -1
package/dist/core/operations/setup.d.ts.map +1 -1
package/dist/core/operations/setup.js +33 -5
package/dist/core/operations/setup.js.map +1 -1
package/dist/interfaces/mcp/server.js +52 -13
package/dist/interfaces/mcp/server.js.map +1 -1
package/package.json +1 -1
package/scaffold/cocoindex/flow.py +105 -0
package/scaffold/cocoindex/pipeline.py +18 -113
package/scaffold/cocoindex/requirements.txt +2 -1
package/scaffold/cocoindex/server.py +32 -0

package/dist/cli.js CHANGED Viewed

@@ -677,7 +677,7 @@ cocoindex
     .option("--root <path>", "Project root (default: cwd)")
     .action(async (opts) => {
     const { resolve: res } = await import("node:path");
-    const { isCocoindexConfigured, cocoindexPipelinePath } = await import("./core/operations/cocoindex.js");
+    const { isCocoindexConfigured, cocoindexPipelinePath, cocoindexDir, findPython } = await import("./core/operations/cocoindex.js");
     const root = res(opts.root ?? process.cwd());
     if (!(await isCocoindexConfigured(root))) {
         console.error("CocoIndex is not configured. Run: npx ai-spector cocoindex setup");
@@ -685,11 +685,21 @@ cocoindex
         return;
     }
     const pipelinePath = cocoindexPipelinePath(root);
+    let pythonBin;
+    try {
+        pythonBin = await findPython(cocoindexDir(root));
+    }
+    catch (err) {
+        console.error(err instanceof Error ? err.message : String(err));
+        process.exitCode = 1;
+        return;
+    }
     const { spawn } = await import("node:child_process");
     await new Promise((resolveP, reject) => {
-        const child = spawn("python", [pipelinePath, "cocoindex", "update"], {
+        const child = spawn(pythonBin, [pipelinePath, "update"], {
             cwd: root,
             stdio: "inherit",
+            env: { ...process.env, AI_SPECTOR_ROOT: root },
             shell: process.platform === "win32",
         });
         child.on("error", reject);

package/dist/cli.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/core/operations/cocoindex.d.ts CHANGED Viewed

@@ -1,15 +1,41 @@
 import type { GraphQueryResult } from "../graph/query.js";
+export type CocoindexInstallMode = "venv" | "global";
+/** Returns the python executable to use for a given cocoindex dir.
+ *  Priority: project venv → COCOINDEX_PYTHON env → python3 → python */
+export declare function findPython(cocoDir: string): Promise<string>;
+/** Returns [command, ...args] for running pipeline.py in MCP mode.
+ *  Priority: uv (inline deps, no venv required) → venv python → python3 → python */
+export declare function buildMcpCommand(cocoDir: string, _pipelinePath: string): Promise<{
+    command: string;
+    args: string[];
+}>;
+/** Check python version is ≥3.11. Returns version string or null on failure. */
+export declare function checkPythonVersion(bin: string): Promise<string | null>;
 export declare function cocoindexDir(root: string): string;
 export declare function cocoindexPipelinePath(root: string): string;
 export declare function isCocoindexConfigured(root: string): Promise<boolean>;
+export interface CocoindexReadiness {
+    configured: boolean;
+    pythonBin: string | null;
+    pythonVersion: string | null;
+    depsInstalled: boolean;
+    indexed: boolean;
+}
+export declare function checkCocoindexReadiness(root: string): Promise<CocoindexReadiness>;
 export interface CocoindexSetupOptions {
     root?: string;
     force?: boolean;
+    /** "venv" creates .venv inside cocoindex dir; "global" uses system pip3/pip */
+    installMode?: CocoindexInstallMode;
+    /** If true, install Python deps and copy .env */
+    installDeps?: boolean;
 }
 export interface CocoindexSetupResult {
     pipelinePath: string;
     envPath: string;
     alreadyExists: boolean;
+    depsInstalled: boolean;
+    installError?: string;
 }
 export declare function runCocoindexSetup(opts?: CocoindexSetupOptions): Promise<CocoindexSetupResult>;
 export interface SearchResult {

package/dist/core/operations/cocoindex.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/core/operations/cocoindex.js CHANGED Viewed

@@ -1,6 +1,70 @@
 import { join, resolve, relative } from "node:path";
-import { mkdir, cp } from "node:fs/promises";
+import { mkdir, cp, copyFile } from "node:fs/promises";
 import { pathExists, readJson } from "../util/fs.js";
+/** Returns the python executable to use for a given cocoindex dir.
+ *  Priority: project venv → COCOINDEX_PYTHON env → python3 → python */
+export async function findPython(cocoDir) {
+    const envVar = process.env["COCOINDEX_PYTHON"];
+    if (envVar)
+        return envVar;
+    // venv inside the cocoindex dir
+    const venvBin = process.platform === "win32"
+        ? join(cocoDir, ".venv", "Scripts", "python.exe")
+        : join(cocoDir, ".venv", "bin", "python");
+    if (await pathExists(venvBin))
+        return venvBin;
+    // system python3 / python
+    const { execFile } = await import("node:child_process");
+    const { promisify } = await import("node:util");
+    const exec = promisify(execFile);
+    for (const bin of ["python3", "python"]) {
+        try {
+            await exec(bin, ["--version"]);
+            return bin;
+        }
+        catch {
+            // not found — try next
+        }
+    }
+    throw new Error("Python not found. CocoIndex requires Python ≥3.11.\n" +
+        "  Install: brew install python@3.11  (macOS) or https://python.org\n" +
+        "  Or set COCOINDEX_PYTHON=/path/to/python3");
+}
+/** Returns [command, ...args] for running pipeline.py in MCP mode.
+ *  Priority: uv (inline deps, no venv required) → venv python → python3 → python */
+export async function buildMcpCommand(cocoDir, _pipelinePath) {
+    const serverPath = join(cocoDir, "server.py");
+    const { execFile } = await import("node:child_process");
+    const { promisify } = await import("node:util");
+    const exec = promisify(execFile);
+    // uv available? — use `uv run --with` for zero-setup execution
+    try {
+        await exec("uv", ["--version"]);
+        return {
+            command: "uv",
+            args: ["run", "--with", "mcp", "--with", "cocoindex", "--with", "sentence-transformers", "--with", "lancedb", serverPath],
+        };
+    }
+    catch {
+        // uv not found — fall through
+    }
+    // venv or system python
+    const pythonBin = await findPython(cocoDir);
+    return { command: pythonBin, args: [serverPath] };
+}
+/** Check python version is ≥3.11. Returns version string or null on failure. */
+export async function checkPythonVersion(bin) {
+    try {
+        const { execFile } = await import("node:child_process");
+        const { promisify } = await import("node:util");
+        const exec = promisify(execFile);
+        const { stdout } = await exec(bin, ["--version"]);
+        return stdout.trim().replace(/^Python /, "");
+    }
+    catch {
+        return null;
+    }
+}
 // ── Config helpers ────────────────────────────────────────────────────────────
 export function cocoindexDir(root) {
     return join(root, ".ai-spector/.docflow/cocoindex");
@@ -11,21 +75,119 @@ export function cocoindexPipelinePath(root) {
 export async function isCocoindexConfigured(root) {
     return pathExists(cocoindexPipelinePath(root));
 }
+export async function checkCocoindexReadiness(root) {
+    const dir = cocoindexDir(root);
+    const configured = await pathExists(cocoindexPipelinePath(root));
+    if (!configured) {
+        return { configured: false, pythonBin: null, pythonVersion: null, depsInstalled: false, indexed: false };
+    }
+    let pythonBin = null;
+    let pythonVersion = null;
+    let depsInstalled = false;
+    try {
+        pythonBin = await findPython(dir);
+        pythonVersion = await checkPythonVersion(pythonBin);
+    }
+    catch {
+        // python not found
+    }
+    if (pythonBin) {
+        try {
+            const { execFile } = await import("node:child_process");
+            const { promisify } = await import("node:util");
+            const exec = promisify(execFile);
+            await exec(pythonBin, ["-c", "import cocoindex"]);
+            depsInstalled = true;
+        }
+        catch {
+            depsInstalled = false;
+        }
+    }
+    const indexed = await pathExists(join(dir, "lance_data"));
+    return { configured, pythonBin, pythonVersion, depsInstalled, indexed };
+}
 export async function runCocoindexSetup(opts = {}) {
     const root = resolve(opts.root ?? process.cwd());
     const destDir = cocoindexDir(root);
     const pipelinePath = join(destDir, "pipeline.py");
-    const envPath = join(destDir, ".env.example");
+    const envExample = join(destDir, ".env.example");
+    const envPath = join(destDir, ".env");
     const alreadyExists = await pathExists(pipelinePath);
-    if (alreadyExists && !opts.force) {
-        return { pipelinePath, envPath, alreadyExists: true };
-    }
-    // locate scaffold relative to this package's bundle root
-    const { scaffoldBundleRoot } = await import("../config/load.js");
-    const scaffoldSrc = join(scaffoldBundleRoot(), "cocoindex");
-    await mkdir(destDir, { recursive: true });
-    await cp(scaffoldSrc, destDir, { recursive: true });
-    return { pipelinePath, envPath, alreadyExists: false };
+    if (!alreadyExists || opts.force) {
+        const { scaffoldBundleRoot } = await import("../config/load.js");
+        const scaffoldSrc = join(scaffoldBundleRoot(), "cocoindex");
+        await mkdir(destDir, { recursive: true });
+        await cp(scaffoldSrc, destDir, { recursive: true });
+    }
+    // Copy .env.example → .env if .env doesn't exist yet
+    if (!(await pathExists(envPath)) && await pathExists(envExample)) {
+        await copyFile(envExample, envPath);
+    }
+    if (!opts.installDeps) {
+        return { pipelinePath, envPath, alreadyExists, depsInstalled: false };
+    }
+    // Install Python deps
+    const mode = opts.installMode ?? "venv";
+    let depsInstalled = false;
+    let installError;
+    try {
+        const pythonBin = await findPython(destDir);
+        const { execFile } = await import("node:child_process");
+        const { promisify } = await import("node:util");
+        const exec = promisify(execFile);
+        const reqFile = join(destDir, "requirements.txt");
+        if (mode === "venv") {
+            const venvDir = join(destDir, ".venv");
+            if (!await pathExists(venvDir) || opts.force) {
+                process.stdout.write("  Creating Python venv…\n");
+                await exec(pythonBin, ["-m", "venv", venvDir]);
+            }
+            const venvPip = process.platform === "win32"
+                ? join(venvDir, "Scripts", "pip.exe")
+                : join(venvDir, "bin", "pip");
+            process.stdout.write("  Installing CocoIndex dependencies into venv…\n");
+            await exec(venvPip, ["install", "-r", reqFile], { cwd: destDir });
+        }
+        else {
+            // global — use pip3 with --break-system-packages fallback for PEP 668
+            process.stdout.write("  Installing CocoIndex dependencies globally…\n");
+            const pip = process.platform === "win32" ? "pip" : "pip3";
+            try {
+                await exec(pip, ["install", "-r", reqFile], { cwd: destDir });
+            }
+            catch {
+                await exec(pip, ["install", "--break-system-packages", "-r", reqFile], { cwd: destDir });
+            }
+        }
+        depsInstalled = true;
+    }
+    catch (err) {
+        installError = err instanceof Error ? err.message : String(err);
+    }
+    // Write MCP entry into project .mcp.json so Cursor/Claude picks up the server
+    await writeCocoindexMcpEntry(root, pipelinePath, destDir);
+    return { pipelinePath, envPath, alreadyExists, depsInstalled, installError };
+}
+/** Merge the cocoindex MCP server entry into <root>/.mcp.json */
+async function writeCocoindexMcpEntry(root, pipelinePath, cocoDir) {
+    const { writeJson } = await import("../util/fs.js");
+    const mcpPath = join(root, ".mcp.json");
+    const existing = (await pathExists(mcpPath))
+        ? await readJson(mcpPath)
+        : {};
+    const { command, args } = await buildMcpCommand(cocoDir, pipelinePath);
+    const merged = {
+        ...existing,
+        mcpServers: {
+            ...(existing.mcpServers ?? {}),
+            "ai-spector-cocoindex": {
+                command,
+                args,
+                env: { AI_SPECTOR_ROOT: root },
+            },
+        },
+    };
+    await writeJson(mcpPath, merged);
 }
 export async function runCocoindexSearch(opts) {
     const root = resolve(opts.root ?? process.cwd());
@@ -45,6 +207,15 @@ async function spawnPythonSearch(root, pipelinePath, query, limit, threshold) {
     const { execFile } = await import("node:child_process");
     const { promisify } = await import("node:util");
     const exec = promisify(execFile);
+    const dir = cocoindexDir(root);
+    let pythonBin;
+    try {
+        pythonBin = await findPython(dir);
+    }
+    catch (err) {
+        const msg = err instanceof Error ? err.message : String(err);
+        throw new Error(msg);
+    }
     const args = [
         pipelinePath,
         "search",
@@ -52,13 +223,14 @@ async function spawnPythonSearch(root, pipelinePath, query, limit, threshold) {
         "--limit", String(limit),
         "--threshold", String(threshold),
     ];
-    const { stdout } = await exec("python", args, {
+    const { stdout } = await exec(pythonBin, args, {
         cwd: root,
-        env: { ...process.env },
+        env: { ...process.env, AI_SPECTOR_ROOT: root },
         maxBuffer: 1024 * 1024,
     });
     try {
-        return JSON.parse(stdout);
+        const parsed = JSON.parse(stdout);
+        return Array.isArray(parsed) ? parsed : [];
     }
     catch {
         return [];
@@ -77,7 +249,6 @@ async function enrichWithGraphNodeIds(root, results) {
         for (const node of graph.nodes) {
             const file = node.file;
             if (file) {
-                // normalise to relative path from root
                 const rel = relative(root, resolve(root, file));
                 nodeFileMap.set(rel, node.id);
             }
@@ -95,7 +266,6 @@ async function enrichWithGraphNodeIds(root, results) {
 }
 export async function runGraphQueryFuzzy(opts) {
     const root = resolve(opts.root ?? process.cwd());
-    // Step 1: semantic search to resolve natural language → graphNodeId
     const searchResult = await runCocoindexSearch({
         root,
         query: opts.query,
@@ -110,7 +280,6 @@ export async function runGraphQueryFuzzy(opts) {
         throw new Error(`No graph node found for query "${opts.query}". ` +
             "Try a more specific query or use graph_query with an exact node id.");
     }
-    // Step 2: graph traversal from resolved node
     const { loadDocflowConfig } = await import("../config/load.js");
     const { config } = await loadDocflowConfig(root);
     const { runGraphQuery } = await import("./graph-query.js");

package/dist/core/operations/cocoindex.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/core/operations/init.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/core/operations/init.js CHANGED Viewed

@@ -5,7 +5,7 @@ import { copyTree, pathExists, readJson, writeJson } from "../util/fs.js";
 import { ensureGitRepository, installGitHooks } from "./hooks.js";
 import { ensureAiSpectorGitignore } from "../util/gitignore.js";
 import { isInteractive, promptLine, promptSelect, promptYesNo } from "../util/prompt.js";
-import { isCocoindexConfigured, runCocoindexSetup } from "./cocoindex.js";
+import { checkCocoindexReadiness, runCocoindexSetup } from "./cocoindex.js";
 const MCP_SERVER_ENTRY = {
     command: "npx",
     args: ["ai-spector-mcp"],
@@ -100,11 +100,15 @@ async function runWizard(opts, alreadyInitialized) {
         installHook = true; // non-interactive: always attempt
     }
     // --- CocoIndex ---
-    let setupCocoindex = false;
+    let cocoindexMode = "skip";
     if (interactive) {
-        setupCocoindex = await promptYesNo("\nEnable CocoIndex for semantic doc search? (requires Python 3.11+)", false);
+        cocoindexMode = await promptSelect("\nEnable CocoIndex for semantic doc search? (requires Python 3.11+)", [
+            { value: "skip", label: "Skip", hint: "set up later with: npx ai-spector cocoindex setup" },
+            { value: "venv", label: "Yes — install in venv", hint: "recommended: isolated .venv inside cocoindex dir" },
+            { value: "global", label: "Yes — install globally", hint: "uses system pip3; may need --break-system-packages on macOS" },
+        ], "skip");
     }
-    return { target, langCodes, installHook, setupCocoindex };
+    return { target, langCodes, installHook, cocoindexMode };
 }
 // ---------------------------------------------------------------------------
 // Core init
@@ -122,7 +126,7 @@ export async function runInit(opts) {
     if (alreadyInitialized) {
         process.stdout.write("Re-initializing (--force). Existing scaffold files will be overwritten.\n");
     }
-    const { target, langCodes, installHook, setupCocoindex } = await runWizard(opts, alreadyInitialized);
+    const { target, langCodes, installHook, cocoindexMode } = await runWizard(opts, alreadyInitialized);
     const languages = buildLanguageConfigs(langCodes);
     process.stdout.write("\nSetting up…\n");
     await copyScaffoldToProject(root, target);
@@ -178,8 +182,18 @@ export async function runInit(opts) {
         }
     }
     // CocoIndex setup
-    if (setupCocoindex) {
-        await runCocoindexSetup({ root });
+    let cocoSetupResult;
+    if (cocoindexMode !== "skip") {
+        process.stdout.write("\nSetting up CocoIndex…\n");
+        cocoSetupResult = await runCocoindexSetup({
+            root,
+            installMode: cocoindexMode,
+            installDeps: true,
+        });
+        if (cocoSetupResult.installError) {
+            process.stdout.write(`  Warning: dependency install failed — ${cocoSetupResult.installError}\n`);
+            process.stdout.write("  You can retry manually: npx ai-spector cocoindex setup\n");
+        }
     }
     // Write .mcp.json for Claude target
     let claudeMcpPath;
@@ -187,7 +201,7 @@ export async function runInit(opts) {
         claudeMcpPath = await writeMcpConfig(root);
     }
     // CocoIndex status
-    const cocoConfigured = await isCocoindexConfigured(root);
+    const cocoReadiness = await checkCocoindexReadiness(root);
     // ---------------------------------------------------------------------------
     // Summary
     // ---------------------------------------------------------------------------
@@ -216,7 +230,18 @@ export async function runInit(opts) {
         process.stdout.write(`  claude    -> CLAUDE.md + .claude/skills/\n`);
         process.stdout.write(`  mcp       -> ${claudeMcpPath} (ai-spector MCP server registered)\n`);
     }
-    process.stdout.write(`  cocoindex -> ${cocoConfigured ? "configured ✓" : "not configured (run: npx ai-spector cocoindex setup)"}\n`);
+    if (cocoReadiness.configured) {
+        if (cocoReadiness.depsInstalled) {
+            process.stdout.write(`  cocoindex -> ready ✓ (${cocoindexMode === "venv" ? "venv" : "global"}, run: npx ai-spector cocoindex update to build index)\n`);
+        }
+        else {
+            process.stdout.write(`  cocoindex -> scaffolded only — deps not installed\n`);
+            process.stdout.write(`      fix: npx ai-spector cocoindex setup\n`);
+        }
+    }
+    else {
+        process.stdout.write(`  cocoindex -> not configured (run: npx ai-spector cocoindex setup)\n`);
+    }
     process.stdout.write("\n");
     process.stdout.write("What you can change later:\n");
     process.stdout.write("  Add a language:       npx ai-spector lang add <code>\n");

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package/dist/core/operations/setup.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../../../src/core/operations/setup.ts"],"names":[],"mappings":"AAgBA,MAAM,MAAM,eAAe,GAAG,IAAI,GAAG,SAAS,GAAG,SAAS,CAAC;AAE3D,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,eAAe,CAAC;IACxB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,UAAU;IACzB,WAAW,EAAE,MAAM,CAAC;IACpB,KAAK,EAAE,OAAO,CAAC;IACf,KAAK,EAAE,SAAS,EAAE,CAAC;CACpB;AAED,MAAM,WAAW,YAAY;IAC3B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,EAAE,CAAC;IACrB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,IAAI,CAAC,EAAE,OAAO,CAAC;CAChB;AAiCD,wBAAsB,UAAU,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CA8JzE;AA+CD,wBAAsB,aAAa,CAAC,IAAI,GAAE,YAAiB,GAAG,OAAO,CAAC,UAAU,CAAC,CAGhF;AAED,wBAAsB,QAAQ,CAAC,IAAI,GAAE,YAAiB,GAAG,OAAO,CAAC,UAAU,CAAC,CAgE3E"}

package/dist/core/operations/setup.js CHANGED Viewed

@@ -4,7 +4,7 @@ import { createRequire } from "node:module";
 import { loadDocflowConfig } from "../config/load.js";
 import { runInit } from "./init.js";
 import { ensureGitRepository, installGitHooks } from "./hooks.js";
-import { isCocoindexConfigured, runCocoindexSetup } from "./cocoindex.js";
+import { checkCocoindexReadiness, runCocoindexSetup } from "./cocoindex.js";
 import { runSyncCursor } from "./sync-cursor.js";
 import { pathExists, readJson } from "../util/fs.js";
 import { ensureAiSpectorGitignore } from "../util/gitignore.js";
@@ -158,6 +158,31 @@ export async function auditSetup(projectRoot) {
             fix: hasDep ? undefined : "npm install -D ai-spector",
         });
     }
+    // CocoIndex checks (only when configured)
+    const cocoReadiness = await checkCocoindexReadiness(root);
+    if (cocoReadiness.configured) {
+        steps.push({
+            id: "cocoindex-python",
+            label: "CocoIndex — Python ≥3.11",
+            status: cocoReadiness.pythonVersion ? "ok" : "missing",
+            detail: cocoReadiness.pythonVersion ?? undefined,
+            fix: cocoReadiness.pythonVersion
+                ? undefined
+                : "brew install python@3.11  or  https://python.org  (then set COCOINDEX_PYTHON if needed)",
+        });
+        steps.push({
+            id: "cocoindex-deps",
+            label: "CocoIndex — dependencies installed",
+            status: cocoReadiness.depsInstalled ? "ok" : "missing",
+            fix: cocoReadiness.depsInstalled ? undefined : "npx ai-spector cocoindex setup",
+        });
+        steps.push({
+            id: "cocoindex-index",
+            label: "CocoIndex — index built (lance_data/)",
+            status: cocoReadiness.indexed ? "ok" : "warning",
+            fix: cocoReadiness.indexed ? undefined : "npx ai-spector cocoindex update",
+        });
+    }
     const required = ["node", "init", "cursor-skills"];
     const ready = required.every((id) => steps.find((s) => s.id === id)?.status === "ok");
     return { projectRoot: root, ready, steps };
@@ -247,10 +272,13 @@ export async function runSetup(opts = {}) {
     }
     await mkdir(join(root, "docs/data-source"), { recursive: true });
     // Offer CocoIndex setup when interactive and not yet configured
-    if (interactive && !(await isCocoindexConfigured(root))) {
-        const setupCoco = await promptYesNo("Enable CocoIndex for semantic doc search? (requires Python 3.11+)", false);
-        if (setupCoco) {
-            await runCocoindexSetup({ root });
+    if (interactive) {
+        const cocoReady = await checkCocoindexReadiness(root);
+        if (!cocoReady.configured) {
+            const setupCoco = await promptYesNo("Enable CocoIndex for semantic doc search? (requires Python 3.11+)", false);
+            if (setupCoco) {
+                await runCocoindexSetup({ root, installDeps: true, installMode: "venv" });
+            }
         }
     }
     if (opts.installDep) {

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package/dist/interfaces/mcp/server.js CHANGED Viewed

@@ -15,59 +15,98 @@ const server = new McpServer({
     version: pkg.version,
 });
 // ── Graph tools ───────────────────────────────────────────────────────────────
-server.tool("graph_query", "Walk the traceability graph from a seed node and return connected nodes and edges", GraphQuerySchema.shape, async (input) => {
+server.registerTool("graph_query", {
+    description: "Walk the traceability graph from a seed node and return connected nodes and edges",
+    inputSchema: GraphQuerySchema.shape,
+}, async (input) => {
     const result = await toolGraphQuery(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
-server.tool("graph_impact", "Compute impact analysis for a change — returns which documents/sections need to be regenerated or reviewed", GraphImpactSchema.shape, async (input) => {
+server.registerTool("graph_impact", {
+    description: "Compute impact analysis for a change — returns which documents/sections need to be regenerated or reviewed",
+    inputSchema: GraphImpactSchema.shape,
+}, async (input) => {
     const result = await toolGraphImpact(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
-server.tool("graph_validate", "Validate the traceability graph against schema and traceability rules", GraphValidateSchema.shape, async (input) => {
+server.registerTool("graph_validate", {
+    description: "Validate the traceability graph against schema and traceability rules",
+    inputSchema: GraphValidateSchema.shape,
+}, async (input) => {
     const result = await toolGraphValidate(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
-server.tool("graph_merge", "Merge AI-extracted knowledge (knowledge.json) into the traceability graph", GraphMergeSchema.shape, async (input) => {
+server.registerTool("graph_merge", {
+    description: "Merge AI-extracted knowledge (knowledge.json) into the traceability graph",
+    inputSchema: GraphMergeSchema.shape,
+}, async (input) => {
     const result = await toolGraphMerge(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
 // ── Index tool ────────────────────────────────────────────────────────────────
-server.tool("index", "Re-index the project: rebuild graph structure, merge knowledge, build doc indexes", IndexSchema.shape, async (input) => {
+server.registerTool("index", {
+    description: "Re-index the project: rebuild graph structure, merge knowledge, build doc indexes",
+    inputSchema: IndexSchema.shape,
+}, async (input) => {
     const result = await toolIndex(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
 // ── Comment tools ─────────────────────────────────────────────────────────────
-server.tool("comments_list", "List review comment threads, optionally filtered by file or status", CommentsListSchema.shape, async (input) => {
+server.registerTool("comments_list", {
+    description: "List review comment threads, optionally filtered by file or status",
+    inputSchema: CommentsListSchema.shape,
+}, async (input) => {
     const result = await toolCommentsList(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
-server.tool("comments_inbox", "Get the structured comment inbox with priority ordering and IDE presentation hints", CommentsInboxSchema.shape, async (input) => {
+server.registerTool("comments_inbox", {
+    description: "Get the structured comment inbox with priority ordering and IDE presentation hints",
+    inputSchema: CommentsInboxSchema.shape,
+}, async (input) => {
     const result = await toolCommentsInbox(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
-server.tool("comments_show", "Get full detail of a single comment thread by id", CommentsShowSchema.shape, async (input) => {
+server.registerTool("comments_show", {
+    description: "Get full detail of a single comment thread by id",
+    inputSchema: CommentsShowSchema.shape,
+}, async (input) => {
     const result = await toolCommentsShow(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
-server.tool("comments_resolve", "Resolve a comment thread", CommentsResolveSchema.shape, async (input) => {
+server.registerTool("comments_resolve", {
+    description: "Resolve a comment thread",
+    inputSchema: CommentsResolveSchema.shape,
+}, async (input) => {
     const result = await toolCommentsResolve(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
 // ── Template tools ────────────────────────────────────────────────────────────
-server.tool("template_list", "List installed template packs and show which is active", TemplateListSchema.shape, async (input) => {
+server.registerTool("template_list", {
+    description: "List installed template packs and show which is active",
+    inputSchema: TemplateListSchema.shape,
+}, async (input) => {
     const result = await toolTemplateList(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
-server.tool("template_inspect", "Inspect a template pack — returns its manifest and available documents", TemplateInspectSchema.shape, async (input) => {
+server.registerTool("template_inspect", {
+    description: "Inspect a template pack — returns its manifest and available documents",
+    inputSchema: TemplateInspectSchema.shape,
+}, async (input) => {
     const result = await toolTemplateInspect(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
 // ── CocoIndex tools ───────────────────────────────────────────────────────────
-server.tool("docs_search", "Semantic search over project documentation. Returns matching sections with similarity scores and traceability graph node IDs. Requires CocoIndex to be set up (npx ai-spector cocoindex setup).", DocsSearchSchema.shape, async (input) => {
+server.registerTool("docs_search", {
+    description: "Semantic search over project documentation. Returns matching sections with similarity scores and traceability graph node IDs. Requires CocoIndex to be set up (npx ai-spector cocoindex setup).",
+    inputSchema: DocsSearchSchema.shape,
+}, async (input) => {
     const result = await toolDocsSearch(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });
-server.tool("graph_query_fuzzy", "Find a graph node by natural language description, then return its subgraph. Combines semantic doc search with graph traversal in one call. Requires CocoIndex (npx ai-spector cocoindex setup).", GraphQueryFuzzySchema.shape, async (input) => {
+server.registerTool("graph_query_fuzzy", {
+    description: "Find a graph node by natural language description, then return its subgraph. Combines semantic doc search with graph traversal in one call. Requires CocoIndex (npx ai-spector cocoindex setup).",
+    inputSchema: GraphQueryFuzzySchema.shape,
+}, async (input) => {
     const result = await toolGraphQueryFuzzy(input);
     return { content: [{ type: "text", text: JSON.stringify(result, null, 2) }] };
 });

package/dist/interfaces/mcp/server.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "ai-spector",
-  "version": "0.7.4",
+  "version": "0.7.7",
   "description": "Cursor-first documentation workflow: traceability graph, SRS/basic/detail design templates, and ai-spector CLI",
   "type": "module",
   "license": "MIT",

package/scaffold/cocoindex/flow.py ADDED Viewed

@@ -0,0 +1,105 @@
+"""
+CocoIndex flow definition and shared search logic for ai-spector.
+Config is read from environment variables:
+  AI_SPECTOR_ROOT       — project root (default: cwd)
+  COCOINDEX_DB_URL      — Postgres URL; omit to use LanceDB
+  COCOINDEX_EMBED_MODEL — embedding model (default: all-MiniLM-L6-v2)
+                          prefix with "openai:" to use OpenAI embeddings
+"""
+import json
+import os
+import sys
+from pathlib import Path
+import cocoindex
+PROJECT_ROOT = Path(os.getenv("AI_SPECTOR_ROOT", str(Path.cwd())))
+INDEX_CONFIG = PROJECT_ROOT / ".ai-spector/.docflow/config/index.docs.json"
+LANCE_PATH = str(PROJECT_ROOT / ".ai-spector/.docflow/cocoindex/lance_data")
+DB_URL = os.getenv("COCOINDEX_DB_URL", "")
+EMBED_MODEL = os.getenv(
+    "COCOINDEX_EMBED_MODEL",
+    "sentence-transformers/all-MiniLM-L6-v2",
+)
+def load_doc_roots() -> list[str]:
+    if not INDEX_CONFIG.exists():
+        raise FileNotFoundError(
+            f"index.docs.json not found at {INDEX_CONFIG}\n"
+            "Run `npx ai-spector index` first to create it."
+        )
+    cfg = json.loads(INDEX_CONFIG.read_text())
+    roots = []
+    for src in cfg.get("sources", {}).values():
+        p = PROJECT_ROOT / src["root"]
+        if p.exists():
+            roots.append(str(p))
+    data_source = PROJECT_ROOT / "docs" / "data-source"
+    if data_source.exists():
+        roots.append(str(data_source))
+    return roots
+def make_embed():
+    if EMBED_MODEL.startswith("openai:"):
+        return cocoindex.functions.OpenAIEmbed(model=EMBED_MODEL.removeprefix("openai:"))
+    return cocoindex.functions.SentenceTransformerEmbed(model=EMBED_MODEL)
+def make_storage():
+    if DB_URL:
+        return cocoindex.storages.Postgres(table_name="doc_chunks")
+    return cocoindex.storages.LanceDB(uri=LANCE_PATH, table_name="doc_chunks")
+@cocoindex.flow_def(name="ai_spector_docs")
+def docs_flow(flow_builder: cocoindex.FlowBuilder, db: cocoindex.DataScope):
+    embed = make_embed()
+    storage = make_storage()
+    for root in load_doc_roots():
+        docs = flow_builder.add_source(
+            cocoindex.sources.LocalFile(
+                path=root,
+                included_patterns=["**/*.md"],
+            )
+        )
+        chunks = docs.transform(
+            cocoindex.functions.SplitRecursively(),
+            language="markdown",
+            chunk_size=400,
+            chunk_overlap=50,
+        )
+        chunks.transform(embed).save_to(db["doc_chunks"], storage)
+def search(query: str, limit: int = 5, threshold: float = 0.75) -> list[dict]:
+    """Returns a list of result dicts; never raises (errors return [])."""
+    try:
+        query_vec = make_embed().embed_query(query)
+    except Exception as e:
+        sys.stderr.write(f"Embedding failed: {e}\n")
+        return []
+    try:
+        rows = make_storage().search(
+            table="doc_chunks",
+            vector=query_vec,
+            limit=limit,
+            score_threshold=threshold,
+        )
+    except Exception as e:
+        sys.stderr.write(f"Search failed: {e}\n")
+        return []
+    return [
+        {
+            "docPath": row.get("filename", ""),
+            "heading": row.get("heading", ""),
+            "excerpt": row.get("text", ""),
+            "score": round(float(row.get("score", 0)), 4),
+        }
+        for row in rows
+    ]

package/scaffold/cocoindex/pipeline.py CHANGED Viewed

@@ -1,128 +1,29 @@
 """
-ai-spector CocoIndex pipeline.
+ai-spector CocoIndex — CLI entry point.
-Reads doc roots from .ai-spector/.docflow/config/index.docs.json and indexes
-all markdown files for semantic search.
-Storage:
-  LanceDB (default) — file-based, zero setup, no server required.
-  Set COCOINDEX_DB_URL=postgresql://... to use Postgres+pgvector instead.
-Embedding:
-  all-MiniLM-L6-v2 (default) — runs locally, ~80 MB download, no API key.
-  Set OPENAI_API_KEY and COCOINDEX_EMBED_MODEL=openai:text-embedding-3-small
-  for higher-quality embeddings.
-Usage:
-  python pipeline.py cocoindex update     # index / update changed files
-  python pipeline.py cocoindex query      # search REPL (dev only)
+  python pipeline.py mcp              Run as MCP server (stdio)
+  python pipeline.py update           Build / refresh the semantic index
+  python pipeline.py search --query X Semantic search (used by ai-spector Node CLI)
 """
 import json
 import os
-from pathlib import Path
+import sys
 import cocoindex
-PROJECT_ROOT = Path(os.getenv("AI_SPECTOR_ROOT", str(Path.cwd())))
-INDEX_CONFIG = PROJECT_ROOT / ".ai-spector/.docflow/config/index.docs.json"
-LANCE_PATH = str(PROJECT_ROOT / ".ai-spector/.docflow/cocoindex/lance_data")
-DB_URL = os.getenv("COCOINDEX_DB_URL", "")
-EMBED_MODEL = os.getenv(
-    "COCOINDEX_EMBED_MODEL",
-    "sentence-transformers/all-MiniLM-L6-v2",
-)
-def load_doc_roots() -> list[str]:
-    if not INDEX_CONFIG.exists():
-        raise FileNotFoundError(
-            f"index.docs.json not found at {INDEX_CONFIG}\n"
-            "Run `npx ai-spector index` first to create it."
-        )
-    cfg = json.loads(INDEX_CONFIG.read_text())
-    return [
-        str(PROJECT_ROOT / src["root"])
-        for src in cfg.get("sources", {}).values()
-    ]
-def make_embed():
-    if EMBED_MODEL.startswith("openai:"):
-        model = EMBED_MODEL.removeprefix("openai:")
-        return cocoindex.functions.OpenAIEmbed(model=model)
-    return cocoindex.functions.SentenceTransformerEmbed(model=EMBED_MODEL)
-def make_storage():
-    if DB_URL:
-        return cocoindex.storages.Postgres(table_name="doc_chunks")
-    return cocoindex.storages.LanceDB(uri=LANCE_PATH, table_name="doc_chunks")
-@cocoindex.flow_def(name="ai_spector_docs")
-def docs_flow(flow_builder: cocoindex.FlowBuilder, db: cocoindex.DataScope):
-    embed = make_embed()
-    storage = make_storage()
-    for root in load_doc_roots():
-        docs = flow_builder.add_source(
-            cocoindex.sources.LocalFile(
-                path=root,
-                included_patterns=["**/*.md"],
-            )
-        )
-        chunks = docs.transform(
-            cocoindex.functions.SplitRecursively(),
-            language="markdown",
-            chunk_size=400,
-            chunk_overlap=50,
-        )
-        chunks.transform(embed).save_to(db["doc_chunks"], storage)
-def run_search(query: str, limit: int, threshold: float) -> None:
-    """Semantic search — prints JSON array of results to stdout."""
-    import json
-    try:
-        embed_fn = make_embed()
-        query_vec = embed_fn.embed_query(query)
-    except Exception as e:
-        print(json.dumps({"error": f"Embedding failed: {e}"}))
-        return
-    try:
-        storage = make_storage()
-        rows = storage.search(
-            table="doc_chunks",
-            vector=query_vec,
-            limit=limit,
-            score_threshold=threshold,
-        )
-    except Exception as e:
-        print(json.dumps({"error": f"Search failed: {e}"}))
-        return
-    results = [
-        {
-            "docPath": row.get("filename", ""),
-            "heading": row.get("heading", ""),
-            "excerpt": row.get("text", ""),
-            "score": round(float(row.get("score", 0)), 4),
-        }
-        for row in rows
-    ]
-    print(json.dumps(results))
+from flow import search
 if __name__ == "__main__":
-    import sys
+    cmd = sys.argv[1] if len(sys.argv) > 1 else ""
-    if len(sys.argv) > 1 and sys.argv[1] == "search":
-        import argparse
+    if cmd == "mcp":
+        from server import mcp
+        mcp.run(transport="stdio")
+    elif cmd == "search":
+        import argparse
         parser = argparse.ArgumentParser(prog="pipeline.py search")
         parser.add_argument("--query", required=True)
         parser.add_argument("--limit", type=int, default=5)
@@ -132,6 +33,10 @@ if __name__ == "__main__":
             default=float(os.getenv("COCOINDEX_SIMILARITY_THRESHOLD", "0.75")),
         )
         args = parser.parse_args(sys.argv[2:])
-        run_search(args.query, args.limit, args.threshold)
+        print(json.dumps(search(args.query, args.limit, args.threshold)))
+    elif cmd == "update":
+        cocoindex.cli.cli(["update", "--app", "flow.py"], standalone_mode=True)
     else:
-        cocoindex.cli.main()
+        cocoindex.cli.cli(standalone_mode=True)

package/scaffold/cocoindex/requirements.txt CHANGED Viewed

@@ -1,4 +1,5 @@
-cocoindex>=0.1
+cocoindex>=0.3.39
+mcp>=1.0
 sentence-transformers>=3.0
 lancedb>=0.8

package/scaffold/cocoindex/server.py ADDED Viewed

@@ -0,0 +1,32 @@
+"""MCP server for ai-spector CocoIndex — exposes docs_search and docs_update."""
+import cocoindex
+from mcp.server.fastmcp import FastMCP
+from flow import search
+mcp = FastMCP("ai-spector-cocoindex")
+@mcp.tool()
+def docs_search(query: str, limit: int = 5, threshold: float = 0.75) -> list[dict]:
+    """
+    Semantic search over project docs by meaning, not keywords.
+    Use when the user asks about a concept, feature, or topic.
+    Returns: [{docPath, heading, excerpt, score}]
+    """
+    return search(query, limit, threshold)
+@mcp.tool()
+def docs_update() -> str:
+    """
+    Rebuild the semantic index from project docs.
+    Call after adding or changing doc files before searching.
+    """
+    cocoindex.cli.cli(["update", "--app", "flow.py"], standalone_mode=False)
+    return "Index updated."
+if __name__ == "__main__":
+    mcp.run(transport="stdio")