ai-spector 0.2.4 → 0.2.5

package/dist/cli.js

@@ -11,6 +11,9 @@ import { runAnalyzePrep } from "./commands/analyze.js";
 import { runGraphQuery } from "./commands/graph-query.js";
 import { runGraphImpact } from "./commands/graph-impact.js";
 import { runGraphMerge } from "./commands/graph-merge.js";
+import { runGraphReport } from "./commands/graph-report.js";
+import { ensureHubBundles } from "./graph/bundles.js";
+import { loadInMemoryGraph } from "./graph/loadGraph.js";
 import { runGraphVisualize } from "./commands/graph-visualize.js";
 import { runGraphifyUpdate } from "./commands/graphify-update.js";
 import { runIndex } from "./commands/index.js";
@@ -161,6 +164,7 @@ graph
     .command("merge [file]")
     .description("Merge domain patch or knowledge.json into traceability graph (upsert nodes/edges)")
     .option("--from-knowledge", "Read .ai-spector/.docflow/analysis/knowledge.json")
+    .option("--semantic", "Merge .ai-spector/.docflow/extract/semantic-links.patch.json (agent meaning edges only)")
     .option("-g, --graph <path>", "Graph path")
     .option("-o, --write-patch <path>", "Write normalized extract patch before merge")
     .option("--no-validate", "Skip validate after merge")
@@ -171,12 +175,38 @@ graph
         root: paths.root,
         inputPath: file,
         fromKnowledge: opts.fromKnowledge,
+        semantic: opts.semantic,
         graphPath: opts.graph ?? paths.graph,
         writePatch: opts.writePatch,
         validate: !opts.noValidate,
         dryRun: opts.dryRun,
     });
 });
+graph
+    .command("report")
+    .description("Layer health: structure, spec instances, hubs, provenance, semantic links")
+    .option("-g, --graph <path>", "Graph path")
+    .option("--json", "JSON output for agents")
+    .action(async (opts, cmd) => {
+    const paths = await getPaths(cmd);
+    await runGraphReport({
+        root: paths.root,
+        graphPath: opts.graph ?? paths.graph,
+        json: opts.json,
+    });
+});
+graph
+    .command("ensure-bundles")
+    .description("Create bundle.source + source files + bundle.business (idempotent)")
+    .option("-g, --graph <path>", "Graph path")
+    .action(async (opts, cmd) => {
+    const paths = await getPaths(cmd);
+    const graph = await loadInMemoryGraph(opts.graph ?? paths.graph);
+    const result = await ensureHubBundles(graph, paths.root);
+    await writeJson(opts.graph ?? paths.graph, graph.toTraceabilityGraph());
+    console.log(`Source hub: ${result.sourceFiles} file(s); business hub: ${result.domainMembers} domain member(s)`);
+    console.log(`Wrote ${opts.graph ?? paths.graph}`);
+});
 graph
     .command("link-sources")
     .description("Add derivedFrom edges from domain nodes to docs/data-source paths (and Graphify symbols when matched)")

package/dist/cli.js.map

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package/dist/commands/graph-merge.d.ts

@@ -2,6 +2,8 @@ export interface GraphMergeOptions {
     root?: string;
     inputPath?: string;
     fromKnowledge?: boolean;
+    /** Merge agent semantic-links.patch.json (edges only; no structure nodes). */
+    semantic?: boolean;
     graphPath?: string;
     writePatch?: string;
     validate?: boolean;

package/dist/commands/graph-merge.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"graph-merge.d.ts","sourceRoot":"","sources":["../../src/commands/graph-merge.ts"],"names":[],"mappings":"AAcA,MAAM,WAAW,iBAAiB;IAChC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,wBAAsB,aAAa,CAAC,IAAI,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CA8E1E"}
+{"version":3,"file":"graph-merge.d.ts","sourceRoot":"","sources":["../../src/commands/graph-merge.ts"],"names":[],"mappings":"AAcA,MAAM,WAAW,iBAAiB;IAChC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB,8EAA8E;IAC9E,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,wBAAsB,aAAa,CAAC,IAAI,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CAyF1E"}

package/dist/commands/graph-merge.js

@@ -10,8 +10,15 @@ export async function runGraphMerge(opts) {
     const graphPath = opts.graphPath ?? paths.graph;
     const knowledgePath = join(paths.root, ".ai-spector/.docflow/analysis/knowledge.json");
     const defaultPatchPath = join(paths.root, ".ai-spector/.docflow/extract/patch.json");
+    const semanticPatchPath = join(paths.root, ".ai-spector/.docflow/extract/semantic-links.patch.json");
     let inputPath = opts.inputPath;
-    if (opts.fromKnowledge) {
+    if (opts.semantic) {
+        inputPath = opts.inputPath ?? semanticPatchPath;
+        if (!(await pathExists(inputPath))) {
+            throw new Error(`No semantic patch at ${inputPath}. Run /link-graph in Cursor (agent writes semantic-links.patch.json), then merge.`);
+        }
+    }
+    else if (opts.fromKnowledge) {
         inputPath = knowledgePath;
     }
     else if (!inputPath) {
@@ -29,7 +36,7 @@ export async function runGraphMerge(opts) {
         console.log(`Wrote patch → ${opts.writePatch}`);
     }
     const graph = await loadInMemoryGraph(graphPath);
-    const { stats } = mergePatch(graph, patch);
+    const { stats } = mergePatch(graph, patch, { semanticOnly: opts.semantic === true });
     console.log(`Merge: +${stats.nodesCreated} nodes, ~${stats.nodesUpdated} updated, +${stats.edgesAdded} edges` +
         (stats.nodesSkipped ? `, ${stats.nodesSkipped} structure nodes skipped` : ""));
     if (opts.dryRun) {

package/dist/commands/graph-merge.js.map

@@ -1 +1 @@
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+{"version":3,"file":"graph-merge.js","sourceRoot":"","sources":["../../src/commands/graph-merge.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,iBAAiB,EAAE,MAAM,uBAAuB,CAAC;AAC1D,OAAO,EACL,kBAAkB,EAClB,yBAAyB,EACzB,gBAAgB,GAGjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AAC/D,OAAO,EAAE,mBAAmB,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAChE,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,eAAe,CAAC;AAc5D,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,IAAuB;IACzD,MAAM,KAAK,GAAG,MAAM,mBAAmB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACnD,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,IAAI,KAAK,CAAC,KAAK,CAAC;IAChD,MAAM,aAAa,GAAG,IAAI,CACxB,KAAK,CAAC,IAAI,EACV,8CAA8C,CAC/C,CAAC;IACF,MAAM,gBAAgB,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,yCAAyC,CAAC,CAAC;IACrF,MAAM,iBAAiB,GAAG,IAAI,CAC5B,KAAK,CAAC,IAAI,EACV,wDAAwD,CACzD,CAAC;IAEF,IAAI,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC;IAC/B,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;QAClB,SAAS,GAAG,IAAI,CAAC,SAAS,IAAI,iBAAiB,CAAC;QAChD,IAAI,CAAC,CAAC,MAAM,UAAU,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC;YACnC,MAAM,IAAI,KAAK,CACb,wBAAwB,SAAS,mFAAmF,CACrH,CAAC;QACJ,CAAC;IACH,CAAC;SAAM,IAAI,IAAI,CAAC,aAAa,EAAE,CAAC;QAC9B,SAAS,GAAG,aAAa,CAAC;IAC5B,CAAC;SAAM,IAAI,CAAC,SAAS,EAAE,CAAC;QACtB,IAAI,MAAM,UAAU,CAAC,gBAAgB,CAAC,EAAE,CAAC;YACvC,SAAS,GAAG,gBAAgB,CAAC;QAC/B,CAAC;aAAM,CAAC;YACN,SAAS,GAAG,aAAa,CAAC;QAC5B,CAAC;IACH,CAAC;IAED,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAU,SAAS,CAAC,CAAC;IAC/C,MAAM,KAAK,GAAG,MAAM,YAAY,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;IAEjD,IAAI,IAAI,CAAC,UAAU,EAAE,CAAC;QACpB,MAAM,SAAS,CAAC,IAAI,CAAC,UAAU,EAAE,KAAK,CAAC,CAAC;QACxC,OAAO,CAAC,GAAG,CAAC,iBAAiB,IAAI,CAAC,UAAU,EAAE,CAAC,CAAC;IAClD,CAAC;IAED,MAAM,KAAK,GAAG,MAAM,iBAAiB,CAAC,SAAS,CAAC,CAAC;IACjD,MAAM,EAAE,KAAK,EAAE,GAAG,UAAU,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE,YAAY,EAAE,IAAI,CAAC,QAAQ,KAAK,IAAI,EAAE,CAAC,CAAC;IAErF,OAAO,CAAC,GAAG,CACT,WAAW,KAAK,CAAC,YAAY,YAAY,KAAK,CAAC,YAAY,cAAc,KAAK,CAAC,UAAU,QAAQ;QAC/F,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,YAAY,0BAA0B,CAAC,CAAC,CAAC,EAAE,CAAC,CAChF,CAAC;IAEF,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;QAChB,OAAO,CAAC,GAAG,CAAC,4BAA4B,CAAC,CAAC;QAC1C,OAAO;IACT,CAAC;IAED,MAAM,SAAS,CAAC,SAAS,EAAE,KAAK,CAAC,mBAAmB,EAAE,CAAC,CAAC;IAExD,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,iCAAiC,CAAC,CAAC;IACtE,MAAM,KAAK,GAAG,MAAM,QAAQ,CAA0B,SAAS,CAAC,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC;QAC5E,OAAO,EAAE,CAAC;QACV,QAAQ,EAAE,EAAE;KACb,CAAC,CAAC,CAAC;IACJ,MAAM,QAAQ,GAAI,KAAK,CAAC,QAAoC,IAAI,EAAE,CAAC;IACnE,QAAQ,CAAC,aAAa,GAAG,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IAClD,QAAQ,CAAC,eAAe,GAAG,SAAS,CAAC;IACrC,KAAK,CAAC,QAAQ,GAAG,QAAQ,CAAC;IAC1B,MAAM,SAAS,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;IAElC,IAAI,IAAI,CAAC,QAAQ,KAAK,KAAK,EAAE,CAAC;QAC5B,MAAM,MAAM,GAAG,MAAM,aAAa,CAAC;YACjC,SAAS;YACT,UAAU,EAAE,KAAK,CAAC,MAAM;YACxB,YAAY,EAAE,KAAK,CAAC,QAAQ;YAC5B,SAAS,EAAE,KAAK,CAAC,iBAAiB;SACnC,CAAC,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,OAAO,CAAC,CAAC;QAC5D,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACtB,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC;YAClC,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;YAClB,OAAO,CAAC,KAAK,CAAC,oEAAoE,CAAC,CAAC;YACpF,OAAO,CAAC,KAAK,CAAC,4EAA4E,CAAC,CAAC;YAC5F,OAAO,CAAC,KAAK,CAAC,0EAA0E,CAAC,CAAC;YAC1F,MAAM,IAAI,KAAK,CAAC,qCAAqC,CAAC,CAAC;QACzD,CAAC;QACD,MAAM,KAAK,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,MAAM,CAAC,CAAC;QAC1D,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACrB,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC;QACnC,CAAC;QACD,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,CAAC;IACpC,CAAC;IAED,OAAO,CAAC,GAAG,CAAC,SAAS,SAAS,EAAE,CAAC,CAAC;AACpC,CAAC;AAED,KAAK,UAAU,YAAY,CAAC,GAAY,EAAE,UAAkB;IAC1D,IAAI,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC;QAC5B,MAAM,SAAS,GAAG,GAAwB,CAAC;QAC3C,IAAI,CAAC,yBAAyB,CAAC,SAAS,CAAC,EAAE,CAAC;YAC1C,MAAM,IAAI,KAAK,CACb,wBAAwB,UAAU,iEAAiE,CACpG,CAAC;QACJ,CAAC;QACD,OAAO,gBAAgB,CAAC,SAAS,CAAC,CAAC;IACrC,CAAC;IAED,MAAM,KAAK,GAAG,cAAc,CAAC,GAAmB,CAAC,CAAC;IAClD,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzD,MAAM,IAAI,KAAK,CAAC,kBAAkB,UAAU,EAAE,CAAC,CAAC;IAClD,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC"}

package/dist/commands/graph-report.d.ts

@@ -0,0 +1,7 @@
+export interface GraphReportOptions {
+    root?: string;
+    graphPath?: string;
+    json?: boolean;
+}
+export declare function runGraphReport(opts: GraphReportOptions): Promise<void>;
+//# sourceMappingURL=graph-report.d.ts.map

package/dist/commands/graph-report.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"graph-report.d.ts","sourceRoot":"","sources":["../../src/commands/graph-report.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,kBAAkB;IACjC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,CAAC,EAAE,OAAO,CAAC;CAChB;AAED,wBAAsB,cAAc,CAAC,IAAI,EAAE,kBAAkB,GAAG,OAAO,CAAC,IAAI,CAAC,CAoD5E"}

package/dist/commands/graph-report.js

@@ -0,0 +1,39 @@
+import { auditGraphLayers } from "../graph/layer-audit.js";
+import { loadInMemoryGraph } from "../graph/loadGraph.js";
+import { resolveProjectPaths } from "../util/paths.js";
+export async function runGraphReport(opts) {
+    const paths = await resolveProjectPaths(opts.root);
+    const graphPath = opts.graphPath ?? paths.graph;
+    const graph = await loadInMemoryGraph(graphPath);
+    const report = await auditGraphLayers(graph, paths.root);
+    if (opts.json) {
+        console.log(JSON.stringify(report, null, 2));
+        return;
+    }
+    const L = report.layers;
+    console.log("Graph layer report");
+    console.log("──────────────────");
+    console.log(`  Structure: ${L.structure.ok ? "ok" : "incomplete"} — ${L.structure.documents} documents, ${L.structure.sections} sections`);
+    console.log(`  Spec instances: ${L.specInstances.ok ? "ok" : "incomplete"} — ${L.specInstances.useCaseDocs} UC docs, ${L.specInstances.featureDocs} F docs, ${L.specInstances.sections} detail sections`);
+    if (L.specInstances.missingOnDisk.length > 0) {
+        console.log(`    Missing in graph: ${L.specInstances.missingOnDisk.join(", ")}`);
+    }
+    console.log(`  Domain: ${L.domain.ok ? "ok" : "incomplete"} — ${L.domain.useCases} UCs, ${L.domain.features} features, ${L.domain.actors} actors`);
+    console.log(`  Source hub: ${L.sourceHub.ok ? "ok" : "incomplete"} — bundle ${L.sourceHub.bundlePresent ? "yes" : "no"}, ${L.sourceHub.sourceFiles} source files`);
+    console.log(`  Business hub: ${L.businessHub.ok ? "ok" : "incomplete"} — bundle ${L.businessHub.bundlePresent ? "yes" : "no"}, ${L.businessHub.domainMembers} members`);
+    console.log(`  Provenance: ${L.provenance.ok ? "ok" : "incomplete"} — ${L.provenance.derivedFrom} derivedFrom`);
+    if (L.provenance.domainsWithoutSource.length > 0) {
+        console.log(`    No source: ${L.provenance.domainsWithoutSource.join(", ")}`);
+    }
+    console.log(`  Semantic links: ${L.semanticLinks.ok ? "ok" : "optional"} — ${L.semanticLinks.relatesTo} relatesTo`);
+    if (L.semanticLinks.domainsWithoutSemanticLinks.length > 0) {
+        console.log(`    Suggest agent: ${L.semanticLinks.domainsWithoutSemanticLinks.join(", ")}`);
+    }
+    if (report.suggestedCommand) {
+        console.log(`\nSuggested CLI: ${report.suggestedCommand}`);
+    }
+    if (report.suggestedAgentCommand) {
+        console.log(`Suggested agent: ${report.suggestedAgentCommand}`);
+    }
+}
+//# sourceMappingURL=graph-report.js.map

package/dist/commands/graph-report.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"graph-report.js","sourceRoot":"","sources":["../../src/commands/graph-report.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,EAAE,iBAAiB,EAAE,MAAM,uBAAuB,CAAC;AAC1D,OAAO,EAAE,mBAAmB,EAAE,MAAM,kBAAkB,CAAC;AAQvD,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,IAAwB;IAC3D,MAAM,KAAK,GAAG,MAAM,mBAAmB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACnD,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,IAAI,KAAK,CAAC,KAAK,CAAC;IAChD,MAAM,KAAK,GAAG,MAAM,iBAAiB,CAAC,SAAS,CAAC,CAAC;IACjD,MAAM,MAAM,GAAG,MAAM,gBAAgB,CAAC,KAAK,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;IAEzD,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;QAC7C,OAAO;IACT,CAAC;IAED,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC;IACxB,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,CAAC;IAClC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,CAAC;IAClC,OAAO,CAAC,GAAG,CACT,gBAAgB,CAAC,CAAC,SAAS,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,YAAY,MAAM,CAAC,CAAC,SAAS,CAAC,SAAS,eAAe,CAAC,CAAC,SAAS,CAAC,QAAQ,WAAW,CAC9H,CAAC;IACF,OAAO,CAAC,GAAG,CACT,qBAAqB,CAAC,CAAC,aAAa,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,YAAY,MAAM,CAAC,CAAC,aAAa,CAAC,WAAW,aAAa,CAAC,CAAC,aAAa,CAAC,WAAW,YAAY,CAAC,CAAC,aAAa,CAAC,QAAQ,kBAAkB,CAC7L,CAAC;IACF,IAAI,CAAC,CAAC,aAAa,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC7C,OAAO,CAAC,GAAG,CAAC,yBAAyB,CAAC,CAAC,aAAa,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACnF,CAAC;IACD,OAAO,CAAC,GAAG,CACT,aAAa,CAAC,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,YAAY,MAAM,CAAC,CAAC,MAAM,CAAC,QAAQ,SAAS,CAAC,CAAC,MAAM,CAAC,QAAQ,cAAc,CAAC,CAAC,MAAM,CAAC,MAAM,SAAS,CACtI,CAAC;IACF,OAAO,CAAC,GAAG,CACT,iBAAiB,CAAC,CAAC,SAAS,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,YAAY,aAAa,CAAC,CAAC,SAAS,CAAC,aAAa,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,SAAS,CAAC,WAAW,eAAe,CACtJ,CAAC;IACF,OAAO,CAAC,GAAG,CACT,mBAAmB,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,YAAY,aAAa,CAAC,CAAC,WAAW,CAAC,aAAa,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,WAAW,CAAC,aAAa,UAAU,CAC3J,CAAC;IACF,OAAO,CAAC,GAAG,CACT,iBAAiB,CAAC,CAAC,UAAU,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,YAAY,MAAM,CAAC,CAAC,UAAU,CAAC,WAAW,cAAc,CACnG,CAAC;IACF,IAAI,CAAC,CAAC,UAAU,CAAC,oBAAoB,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACjD,OAAO,CAAC,GAAG,CAAC,kBAAkB,CAAC,CAAC,UAAU,CAAC,oBAAoB,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChF,CAAC;IACD,OAAO,CAAC,GAAG,CACT,qBAAqB,CAAC,CAAC,aAAa,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,MAAM,CAAC,CAAC,aAAa,CAAC,SAAS,YAAY,CACvG,CAAC;IACF,IAAI,CAAC,CAAC,aAAa,CAAC,2BAA2B,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3D,OAAO,CAAC,GAAG,CACT,sBAAsB,CAAC,CAAC,aAAa,CAAC,2BAA2B,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAC/E,CAAC;IACJ,CAAC;IACD,IAAI,MAAM,CAAC,gBAAgB,EAAE,CAAC;QAC5B,OAAO,CAAC,GAAG,CAAC,oBAAoB,MAAM,CAAC,gBAAgB,EAAE,CAAC,CAAC;IAC7D,CAAC;IACD,IAAI,MAAM,CAAC,qBAAqB,EAAE,CAAC;QACjC,OAAO,CAAC,GAAG,CAAC,oBAAoB,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC;IAClE,CAAC;AACH,CAAC"}

package/dist/commands/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/commands/index.ts"],"names":[],"mappings":"AAiCA,MAAM,MAAM,eAAe,GAAG,IAAI,GAAG,SAAS,GAAG,QAAQ,CAAC;AAE1D,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,eAAe,CAAC;IACxB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,YAAY;IAC3B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,sEAAsE;IACtE,aAAa,CAAC,EAAE,OAAO,CAAC;CACzB;AAED,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,eAAe,EAAE,CAAC;IACzB,MAAM,EAAE,OAAO,CAAC;CACjB;AAED,wBAAsB,QAAQ,CAC5B,IAAI,GAAE,YAAiB,GACtB,OAAO,CAAC,WAAW,CAAC,CAmXtB"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/commands/index.ts"],"names":[],"mappings":"AAkCA,MAAM,MAAM,eAAe,GAAG,IAAI,GAAG,SAAS,GAAG,QAAQ,CAAC;AAE1D,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,eAAe,CAAC;IACxB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,YAAY;IAC3B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,sEAAsE;IACtE,aAAa,CAAC,EAAE,OAAO,CAAC;CACzB;AAED,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,eAAe,EAAE,CAAC;IACzB,MAAM,EAAE,OAAO,CAAC;CACjB;AAED,wBAAsB,QAAQ,CAC5B,IAAI,GAAE,YAAiB,GACtB,OAAO,CAAC,WAAW,CAAC,CA+ZtB"}

package/dist/commands/index.js

@@ -6,6 +6,7 @@ import { validateGraph, formatIssues } from "./validate.js";
 import { runGraphMerge } from "./graph-merge.js";
 import { runGraphifyUpdate } from "./graphify-update.js";
 import { runProvenanceLink } from "../graph/provenance.js";
+import { ensureBusinessBundle, ensureSourceBundle } from "../graph/bundles.js";
 import { knowledgeStaleWarning, runDocSemanticMerge, } from "../index/doc-semantics.js";
 import { resolveProjectPaths } from "../util/paths.js";
 import { pathExists, readJson, writeJson } from "../util/fs.js";
@@ -218,6 +219,28 @@ export async function runIndex(opts = {}) {
                 detail: opts.skipGraphify ? "--skip-graphify" : "graph-only / docs-only",
             });
         }
+        if (!failed) {
+            try {
+                const graphMem = await loadInMemoryGraph(paths.graph);
+                const srcBundle = await ensureSourceBundle(graphMem, projectRoot);
+                await writeJson(paths.graph, graphMem.toTraceabilityGraph());
+                graphJson = graphMem.toTraceabilityGraph();
+                record({
+                    id: "source-bundle",
+                    label: "Source hub (bundle.source)",
+                    status: "ok",
+                    detail: `${srcBundle.sourceFiles} source file node(s)`,
+                });
+            }
+            catch (err) {
+                record({
+                    id: "source-bundle",
+                    label: "Source hub (bundle.source)",
+                    status: "failed",
+                    detail: err instanceof Error ? err.message : String(err),
+                });
+            }
+        }
         if (!failed) {
             try {
                 const prov = await runProvenanceLink({
@@ -243,6 +266,28 @@ export async function runIndex(opts = {}) {
                 });
             }
         }
+        if (!failed) {
+            try {
+                const graphMem = await loadInMemoryGraph(paths.graph);
+                const biz = ensureBusinessBundle(graphMem);
+                await writeJson(paths.graph, graphMem.toTraceabilityGraph());
+                graphJson = graphMem.toTraceabilityGraph();
+                record({
+                    id: "business-bundle",
+                    label: "Business hub (bundle.business)",
+                    status: "ok",
+                    detail: `${biz.domainMembers} domain member(s)`,
+                });
+            }
+            catch (err) {
+                record({
+                    id: "business-bundle",
+                    label: "Business hub (bundle.business)",
+                    status: "failed",
+                    detail: err instanceof Error ? err.message : String(err),
+                });
+            }
+        }
         if (!opts.skipValidate && !failed) {
             try {
                 const issues = await validateGraph({

package/dist/commands/index.js.map

@@ -1 +1 @@
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package/dist/graph/bundles.d.ts

@@ -0,0 +1,32 @@
+import type { ExtractPatch } from "./knowledge.js";
+import { type MergeResult } from "./merge.js";
+import type { InMemoryGraph } from "./InMemoryGraph.js";
+export declare const BUNDLE_SOURCE_ID = "bundle.source";
+export declare const BUNDLE_BUSINESS_ID = "bundle.business";
+/** Stable id for a repo-relative path under docs/data-source. */
+export declare function sourceFileNodeId(repoPath: string): string;
+export declare function isSourceFileNodeId(id: string): boolean;
+export declare function pathFromSourceFileNodeId(id: string): string | undefined;
+/** Prefer `source.file:` node id when the path is a known data-source file. */
+export declare function provenanceTargetId(repoPath: string, knownSourceFileIds: ReadonlySet<string>): string;
+export declare function discoverDataSourceMarkdownPaths(projectRoot: string, dataSourceRoot?: string): Promise<string[]>;
+export declare function buildSourceBundlePatch(repoPaths: string[]): ExtractPatch;
+export declare function buildBusinessBundlePatch(graph: InMemoryGraph): ExtractPatch;
+export interface EnsureHubBundlesResult {
+    source: MergeResult;
+    business: MergeResult;
+    sourceFiles: number;
+    domainMembers: number;
+}
+export declare function ensureSourceBundle(graph: InMemoryGraph, projectRoot: string, dataSourceRoot?: string): Promise<{
+    result: MergeResult;
+    sourceFiles: number;
+}>;
+export declare function ensureBusinessBundle(graph: InMemoryGraph): {
+    result: MergeResult;
+    domainMembers: number;
+};
+/** Idempotent source + business hub nodes (call after domain nodes exist). */
+export declare function ensureHubBundles(graph: InMemoryGraph, projectRoot: string, dataSourceRoot?: string): Promise<EnsureHubBundlesResult>;
+export declare function knownSourceFileNodeIds(graph: InMemoryGraph): Set<string>;
+//# sourceMappingURL=bundles.d.ts.map

package/dist/graph/bundles.d.ts.map

@@ -0,0 +1 @@
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package/dist/graph/bundles.js

@@ -0,0 +1,109 @@
+import { mergePatch } from "./merge.js";
+import { discoverMarkdownFiles } from "../index/docs-build.js";
+export const BUNDLE_SOURCE_ID = "bundle.source";
+export const BUNDLE_BUSINESS_ID = "bundle.business";
+const DOMAIN_TYPES = new Set([
+    "actor",
+    "useCase",
+    "feature",
+    "requirement",
+    "dataEntity",
+]);
+/** Stable id for a repo-relative path under docs/data-source. */
+export function sourceFileNodeId(repoPath) {
+    return `source.file:${repoPath.replace(/\\/g, "/").replace(/\/+/g, "/")}`;
+}
+export function isSourceFileNodeId(id) {
+    return id.startsWith("source.file:");
+}
+export function pathFromSourceFileNodeId(id) {
+    if (!isSourceFileNodeId(id)) {
+        return undefined;
+    }
+    return id.slice("source.file:".length);
+}
+/** Prefer `source.file:` node id when the path is a known data-source file. */
+export function provenanceTargetId(repoPath, knownSourceFileIds) {
+    const nodeId = sourceFileNodeId(repoPath);
+    return knownSourceFileIds.has(nodeId) ? nodeId : repoPath;
+}
+export async function discoverDataSourceMarkdownPaths(projectRoot, dataSourceRoot = "docs/data-source") {
+    const files = await discoverMarkdownFiles(projectRoot, dataSourceRoot, "**/*.md");
+    return files.map((f) => f.relativePath.replace(/\\/g, "/")).sort();
+}
+export function buildSourceBundlePatch(repoPaths) {
+    const nodes = [
+        {
+            id: BUNDLE_SOURCE_ID,
+            type: "bundle",
+            role: "source",
+            title: "Data source",
+        },
+    ];
+    const edges = [];
+    for (const path of repoPaths) {
+        const id = sourceFileNodeId(path);
+        const base = path.split("/").pop() ?? path;
+        nodes.push({
+            id,
+            type: "sourceFile",
+            path,
+            title: base.replace(/\.md$/i, ""),
+        });
+        edges.push({ type: "contains", from: BUNDLE_SOURCE_ID, to: id });
+        edges.push({ type: "partOf", from: id, to: BUNDLE_SOURCE_ID });
+    }
+    return { version: 1, nodes, edges };
+}
+export function buildBusinessBundlePatch(graph) {
+    const nodes = [
+        {
+            id: BUNDLE_BUSINESS_ID,
+            type: "bundle",
+            role: "business",
+            title: "Business domain",
+        },
+    ];
+    const edges = [];
+    for (const node of graph.nodesById.values()) {
+        if (!DOMAIN_TYPES.has(node.type)) {
+            continue;
+        }
+        edges.push({ type: "contains", from: BUNDLE_BUSINESS_ID, to: node.id });
+        edges.push({ type: "partOf", from: node.id, to: BUNDLE_BUSINESS_ID });
+    }
+    return { version: 1, nodes, edges };
+}
+export async function ensureSourceBundle(graph, projectRoot, dataSourceRoot = "docs/data-source") {
+    const paths = await discoverDataSourceMarkdownPaths(projectRoot, dataSourceRoot);
+    const patch = buildSourceBundlePatch(paths);
+    const result = mergePatch(graph, patch);
+    return { result, sourceFiles: paths.length };
+}
+export function ensureBusinessBundle(graph) {
+    const patch = buildBusinessBundlePatch(graph);
+    const result = mergePatch(graph, patch);
+    const domainMembers = patch.edges.filter((e) => e.type === "contains" && e.from === BUNDLE_BUSINESS_ID).length;
+    return { result, domainMembers };
+}
+/** Idempotent source + business hub nodes (call after domain nodes exist). */
+export async function ensureHubBundles(graph, projectRoot, dataSourceRoot = "docs/data-source") {
+    const { result: source, sourceFiles } = await ensureSourceBundle(graph, projectRoot, dataSourceRoot);
+    const { result: business, domainMembers } = ensureBusinessBundle(graph);
+    return {
+        source,
+        business,
+        sourceFiles,
+        domainMembers,
+    };
+}
+export function knownSourceFileNodeIds(graph) {
+    const out = new Set();
+    for (const node of graph.nodesById.values()) {
+        if (node.type === "sourceFile") {
+            out.add(node.id);
+        }
+    }
+    return out;
+}
+//# sourceMappingURL=bundles.js.map

package/dist/graph/bundles.js.map

@@ -0,0 +1 @@
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package/dist/graph/layer-audit.d.ts

@@ -0,0 +1,48 @@
+import type { InMemoryGraph } from "./InMemoryGraph.js";
+export interface LayerAuditLayers {
+    structure: {
+        documents: number;
+        sections: number;
+        ok: boolean;
+    };
+    specInstances: {
+        useCaseDocs: number;
+        featureDocs: number;
+        sections: number;
+        ok: boolean;
+        missingOnDisk: string[];
+    };
+    domain: {
+        useCases: number;
+        features: number;
+        actors: number;
+        ok: boolean;
+    };
+    sourceHub: {
+        bundlePresent: boolean;
+        sourceFiles: number;
+        ok: boolean;
+    };
+    businessHub: {
+        bundlePresent: boolean;
+        domainMembers: number;
+        ok: boolean;
+    };
+    provenance: {
+        derivedFrom: number;
+        domainsWithoutSource: string[];
+        ok: boolean;
+    };
+    semanticLinks: {
+        relatesTo: number;
+        domainsWithoutSemanticLinks: string[];
+        ok: boolean;
+    };
+}
+export interface LayerAuditReport {
+    layers: LayerAuditLayers;
+    suggestedCommand?: string;
+    suggestedAgentCommand?: string;
+}
+export declare function auditGraphLayers(graph: InMemoryGraph, projectRoot?: string): Promise<LayerAuditReport>;
+//# sourceMappingURL=layer-audit.d.ts.map

package/dist/graph/layer-audit.d.ts.map

@@ -0,0 +1 @@
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