ai-spector 0.1.2 → 0.1.3

package/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 AI Spector contributors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

@@ -1,169 +1,154 @@
 # AI Spector
 
-AI Spector is an npm-installable bootstrapper for incremental documentation workflows in Cursor.
+Turn project notes and specs into structured documentation (SRS, basic design, detail design) inside [Cursor](https://cursor.com).
 
-1. Analyze project sources with Graphify MCP.
-2. Generate SRS documents in dependency order.
-3. Generate detail design documents in dependency order.
+You work with **slash commands**. The AI runs the `ai-spector` CLI behind the scenes. You only use the terminal once: **`npx ai-spector init`**.
 
-It is designed for part-by-part generation with parallel subagents and merge/review loops.
+---
 
-## What You Get
+## How you work (Cursor-first)
 
-After `init`, your project has:
-
-- Cursor commands: `/analyze`, `/generate-srs`, `/generate-detail-design`
-- Workflow skill + configs + state files
-- SRS/detail design templates
-- Output folders for generated docs
-- Graphify-backed knowledge loop for incremental generation
-
-## Quick Start
+### Once per project
 
 ```bash
-# in your target project
+npm install ai-spector
 npx ai-spector init
 ```
 
-Then in Cursor chat:
+Put your source files in `docs/data-source/`, open the folder in Cursor, and turn on the **ai-spector** skill.
 
-1. `/analyze` (or `/analyze src docs`)
-2. `/generate-srs`
-3. `/generate-detail-design`
+### Then use slash commands
 
-## Init Command
+| You run | What happens |
+|---------|----------------|
+| **`/analyze`** | Builds the graph skeleton, extracts knowledge (Graphify), merges use cases & features into the graph, validates |
+| **`/visualize-graph`** | Opens a browser report to inspect the graph and `knowledge.json` |
+| **`/validate-graph`** | Checks the graph before generation |
+| **`/generate-srs`** | Writes SRS files using graph context (not whole-folder guessing) |
+| **`/generate-basic-design`** | Basic design from the graph |
+| **`/generate-detail-design`** | Detail design from the graph |
+| **`/graph-impact <id>`** | Shows what to regenerate after you change something |
 
-```bash
-ai-spector init [--force] [--no-graphify] [--skip-index] [--yes]
+**Typical path:**
+
+```text
+npx ai-spector init
+→ add docs/data-source/
+→ /analyze
+→ /validate-graph
+→ /generate-srs
 ```
 
-Options:
+Command details live in `.cursor/commands/` after `init` (start with `_workflow.md`).
 
-- `--force`: overwrite existing installed assets.
-- `--no-graphify`: skip Graphify bootstrap.
-- `--skip-index`: do not run initial Graphify index.
-- `--yes`: non-interactive mode.
+If a CLI step fails during a slash command, the agent should **stop**, show you the error, and help you fix it — not bypass the tool with manual edits. See `_cli-failures.md` in your project after `init`.
 
-## Command Guide
+### Why is `docs/data-source/graphify-out/` there?
 
-### `/analyze [paths...]`
+That folder is from **Graphify MCP** during **`/analyze`**, not from `npx ai-spector analyze`. AI Spector’s files live under `.ai-spector/` (especially `knowledge.json` and the traceability graph). You can delete `graphify-out/`; new projects gitignore it. See `docs/data-source/README.md` after `init`.
 
-- No args: analyze current workspace folder.
-- With args: analyze only provided files/folders.
-- Produces:
-  - `docs/.docflow/analysis/knowledge.json`
-  - `docs/.docflow/analysis/gaps.json`
-  - `docs/.docflow/analysis/scope.json`
+---
 
-Examples:
+## What is the graph?
 
-```text
-/analyze
-/analyze src
-/analyze src services docs/requirements
-```
+All structure and traceability live in one file:
 
-### `/generate-srs [file]`
+`.ai-spector/graph/traceability.graph.json`
 
-- No file: generate all pending SRS nodes by DAG wave.
-- With file: generate/repair one target file.
-- Uses existing outputs + completeness checks before writing.
+- Chapters and headings → **sections** in the graph  
+- Use cases, features, actors → **domain nodes** with links (`listedIn`, `satisfies`, …)  
+- Files under `docs/srs/` → **output** of the graph, not the source of truth  
 
-Examples:
+**Graphify** (optional MCP) only helps read `docs/data-source/` during **`/analyze`**. The graph remains canonical.
 
-```text
-/generate-srs
-/generate-srs 3-use-cases.md
-```
+---
 
-### `/generate-detail-design [file]`
+## Requirements
 
-- No file: generate all pending detail design nodes by DAG wave.
-- With file: generate/repair one target file.
-- Uses SRS outputs + Graphify context.
+- Node.js 20+
+- [Cursor](https://cursor.com)
+- Graphify MCP for **`/analyze`**
 
-Examples:
+---
 
-```text
-/generate-detail-design
-/generate-detail-design feature-list.md
+## Try the example in this repo
+
+For package developers:
+
+```bash
+git clone <repo-url>
+cd ai-spector
+npm install && npm run build
+npm run init:example
 ```
 
-## Continue From Existing Files (Default Behavior)
+Open **`example/`** as the Cursor workspace, add files under `example/docs/data-source/`, then run **`/analyze`** → **`/generate-srs`**.
 
-Generation commands always scan existing outputs first and classify files as:
+See [example/README.md](example/README.md).
 
-- `good`
-- `missing_content`
-- `missing_file`
+---
 
-Default behavior:
+## Project layout (after init)
 
-- keep `good` files unchanged
-- patch `missing_content`
-- create `missing_file`
+```text
+your-project/
+  .cursor/commands/          # /analyze, /generate-srs, …
+  .cursor/skills/ai-spector/
+  .ai-spector/
+    graph/traceability.graph.json
+    .docflow/analysis/knowledge.json
+    views/graph-knowledge.html   # after /visualize-graph
+  docs/
+    data-source/                 # your inputs
+    srs/                         # generated
+```
 
-After each generated or patched file, content is synced back to Graphify so later files can use updated context.
+---
 
-## Dependency Waves
+## For developers & contributors
 
-SRS and detail design are generated in dependency order. Independent nodes in the same wave can run in parallel, then main agent merges/reviews before moving to the next wave.
+The CLI is the engine; Cursor commands wrap it.
 
-## Publish to npm
+| Doc | Topic |
+|-----|--------|
+| [workflow-overview.md](docs/design/workflow-overview.md) | Graph-centric design |
+| [traceability-graph-redesign.md](docs/design/traceability-graph-redesign.md) | Schema and roadmap |
 
-From this package repo:
+**Build from source:**
 
 ```bash
-npm login
-npm whoami
-chmod +x bin/ai-spector.js
-npm pack --dry-run
-npm publish --access public
+npm install && npm run build
+npm run init:example
 ```
 
-For next releases:
+**CLI reference** (normally invoked by agents, not end users):
+
+| Command | Purpose |
+|---------|---------|
+| `ai-spector init` | Scaffold project |
+| `ai-spector analyze` | Section tree in graph |
+| `ai-spector graph merge --from-knowledge` | Domain nodes from staging |
+| `ai-spector graph validate` | Rules check |
+| `ai-spector graph visualize [--open]` | HTML report |
+| `ai-spector graph query <id> --json` | Context for generation |
+| `ai-spector graph impact <id> --json` | Regen scope |
+
+Option: `-r <path>` to point at another project root.
+
+---
+
+## Publish to npm (maintainers)
 
 ```bash
-npm version patch
+npm run prepublish:check   # build + list tarball contents
+npm login
 npm publish
 ```
 
-## Installed Project Structure
+Replace `milky-way-66/ai-spector` in `package.json` (`repository`, `homepage`, `bugs`) before publishing. See [PUBLISHING.md](PUBLISHING.md).
 
-```text
-.cursor/
-  commands/
-    analyze.md
-    generate-srs.md
-    generate-detail-design.md
-  skills/
-    ai-spector/
-      SKILL.md
-
-docs/
-  _templates/
-    srs/
-    detail_design/
-    basic_design/
-  .docflow/
-    graph/
-      graphify-index/
-    analysis/
-      knowledge.json
-      gaps.json
-      scope.json
-    partials/
-      srs/
-      detail-design/
-    logs/
-    config/
-      dag.srs.json
-      dag.detail-design.json
-      analyze.graphify.json
-      completeness-rules.srs.json
-      completeness-rules.detail-design.json
-    state.json
-  output/
-    srs/
-    detail-design/
-```
+---
+
+## License
+
+MIT — see [LICENSE](LICENSE).

package/dist/cli.d.ts

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+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=cli.d.ts.map

package/dist/cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":""}

package/dist/cli.js

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+#!/usr/bin/env node
+import { Command } from "commander";
+import { resolve } from "node:path";
+import { writeJson, readJson } from "./util/fs.js";
+import { resolveProjectPaths } from "./util/paths.js";
+import { buildSectionRegistry } from "./registry/build.js";
+import { bootstrapFromRegistry } from "./commands/bootstrap.js";
+import { validateGraph, formatIssues } from "./commands/validate.js";
+import { runInit } from "./commands/init.js";
+import { runAnalyzePrep } from "./commands/analyze.js";
+import { runGraphQuery } from "./commands/graph-query.js";
+import { runGraphImpact } from "./commands/graph-impact.js";
+import { runGraphMerge } from "./commands/graph-merge.js";
+import { runGraphVisualize } from "./commands/graph-visualize.js";
+const program = new Command();
+program
+    .name("ai-spector")
+    .description("AI Spector — init project, analyze prep, traceability graph, templates, Cursor workflow")
+    .version("0.1.0")
+    .option("-r, --root <path>", "Project root (auto-detect via .ai-spector/docflow.config.json)");
+function projectRootOpt(cmd) {
+    return cmd.optsWithGlobals().root;
+}
+async function getPaths(cmd) {
+    return resolveProjectPaths(projectRootOpt(cmd));
+}
+program
+    .command("init")
+    .description("Scaffold .ai-spector, Cursor commands/skills, and docs layout")
+    .option("-f, --force", "Overwrite existing scaffold files")
+    .option("-C, --cwd <path>", "Target directory", process.cwd())
+    .action(async (opts) => {
+    await runInit({
+        targetDir: resolve(opts.cwd ?? process.cwd()),
+        force: opts.force,
+    });
+});
+program
+    .command("analyze")
+    .description("Prepare graph structure (registry + bootstrap). Normally invoked by /analyze, not the user.")
+    .option("--merge", "After prep, merge knowledge.json or extract/patch.json into the graph if present")
+    .action(async (opts, cmd) => {
+    await runAnalyzePrep(projectRootOpt(cmd), { merge: opts.merge });
+});
+const graph = program.command("graph").description("Traceability graph operations");
+graph
+    .command("registry")
+    .description("Build section-registry.json from bundled SRS templates")
+    .action(async (_opts, cmd) => {
+    const paths = await getPaths(cmd);
+    const registry = await buildSectionRegistry(paths.root);
+    await writeJson(paths.registry, registry);
+    const total = registry.documents.reduce((n, d) => n + d.sections.length, 0);
+    console.log(`Wrote ${paths.registry} (${registry.documents.length} documents, ${total} sections)`);
+});
+graph
+    .command("bootstrap")
+    .description("Create structure nodes/edges from section registry")
+    .option("-i, --registry <path>", "Registry path")
+    .option("-o, --output <path>", "Graph output path")
+    .action(async (opts, cmd) => {
+    const paths = await getPaths(cmd);
+    const registryPath = opts.registry ?? paths.registry;
+    const graphPath = opts.output ?? paths.graph;
+    const registry = await readJson(registryPath);
+    const graph = bootstrapFromRegistry(registry);
+    await writeJson(graphPath, graph.toTraceabilityGraph());
+    console.log(`Wrote ${graphPath} (${graph.nodesById.size} nodes, ${graph.toTraceabilityGraph().edges.length} edges)`);
+});
+graph
+    .command("query <id>")
+    .description("Find relevant subgraph and projection paths (for IDE / generate)")
+    .option("-d, --direction <dir>", "out | in | both", "both")
+    .option("--depth <n>", "Traversal depth", "2")
+    .option("-e, --edges <types>", "Comma-separated edge types (default: generate set)")
+    .option("--json", "JSON output for agents")
+    .action(async (id, opts, cmd) => {
+    const paths = await getPaths(cmd);
+    await runGraphQuery({
+        graphPath: paths.graph,
+        seedId: id,
+        direction: opts.direction,
+        depth: Number(opts.depth),
+        edges: opts.edges,
+        json: opts.json,
+    });
+});
+graph
+    .command("impact <id>")
+    .description("Impact analysis: regenerate / review / downstream buckets")
+    .option("--change <type>", "Change type", "content_change")
+    .option("-o, --output <path>", "Write impact report JSON")
+    .option("--json", "Print JSON")
+    .action(async (id, opts, cmd) => {
+    const paths = await getPaths(cmd);
+    await runGraphImpact({
+        graphPath: paths.graph,
+        rulesPath: paths.rulesImpact,
+        originId: id,
+        change: opts.change,
+        output: opts.output,
+        json: opts.json,
+    });
+});
+graph
+    .command("merge [file]")
+    .description("Merge domain patch or knowledge.json into traceability graph (upsert nodes/edges)")
+    .option("--from-knowledge", "Read .ai-spector/.docflow/analysis/knowledge.json")
+    .option("-g, --graph <path>", "Graph path")
+    .option("-o, --write-patch <path>", "Write normalized extract patch before merge")
+    .option("--no-validate", "Skip validate after merge")
+    .option("--dry-run", "Compute merge stats without saving")
+    .action(async (file, opts, cmd) => {
+    const paths = await getPaths(cmd);
+    await runGraphMerge({
+        root: paths.root,
+        inputPath: file,
+        fromKnowledge: opts.fromKnowledge,
+        graphPath: opts.graph ?? paths.graph,
+        writePatch: opts.writePatch,
+        validate: !opts.noValidate,
+        dryRun: opts.dryRun,
+    });
+});
+graph
+    .command("visualize")
+    .description("Generate HTML report to explore graph and knowledge in a browser")
+    .option("-o, --output <path>", "Output HTML path")
+    .option("-g, --graph <path>", "Graph JSON path")
+    .option("--knowledge <path>", "knowledge.json path")
+    .option("--no-knowledge", "Omit knowledge.json from report")
+    .option("--open", "Open the HTML file in the default browser")
+    .action(async (opts, cmd) => {
+    const paths = await getPaths(cmd);
+    await runGraphVisualize({
+        root: paths.root,
+        graphPath: opts.graph ?? paths.graph,
+        knowledgePath: opts.knowledge,
+        output: opts.output,
+        open: opts.open,
+        skipKnowledge: opts.noKnowledge,
+    });
+});
+graph
+    .command("validate")
+    .description("Validate graph against bundled schema and traceability rules")
+    .option("-g, --graph <path>", "Graph path")
+    .option("-s, --schema <path>", "Schema path")
+    .option("--registry <path>", "Registry for REGISTRY-COMPLETE")
+    .option("--rules <path>", "Rules manifest path")
+    .action(async (opts, cmd) => {
+    const paths = await getPaths(cmd);
+    const issues = await validateGraph({
+        graphPath: opts.graph ?? paths.graph,
+        schemaPath: opts.schema ?? paths.schema,
+        registryPath: opts.registry ?? paths.registry,
+        rulesPath: opts.rules ?? paths.rulesTraceability,
+    });
+    console.log(formatIssues(issues));
+    const errors = issues.filter((i) => i.severity === "error");
+    if (errors.length > 0) {
+        process.exitCode = 1;
+    }
+});
+program.parseAsync(process.argv).catch((err) => {
+    const msg = err instanceof Error ? err.message : String(err);
+    console.error(msg);
+    console.error("");
+    console.error("Fix the issue above, then re-run the same command.");
+    console.error("In Cursor, re-run the slash command (/analyze, /validate-graph, …) — see .cursor/commands/_cli-failures.md");
+    process.exit(1);
+});
+//# sourceMappingURL=cli.js.map

package/dist/cli.js.map

@@ -0,0 +1 @@
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package/dist/commands/analyze.d.ts

@@ -0,0 +1,9 @@
+export interface AnalyzePrepOptions {
+    merge?: boolean;
+}
+/**
+ * Prepare traceability graph structure (registry + bootstrap + validate).
+ * Semantic knowledge extraction runs in Cursor via /analyze + Graphify MCP.
+ */
+export declare function runAnalyzePrep(root?: string, opts?: AnalyzePrepOptions): Promise<void>;
+//# sourceMappingURL=analyze.d.ts.map

package/dist/commands/analyze.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"analyze.d.ts","sourceRoot":"","sources":["../../src/commands/analyze.ts"],"names":[],"mappings":"AASA,MAAM,WAAW,kBAAkB;IACjC,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAED;;;GAGG;AACH,wBAAsB,cAAc,CAClC,IAAI,CAAC,EAAE,MAAM,EACb,IAAI,GAAE,kBAAuB,GAC5B,OAAO,CAAC,IAAI,CAAC,CAyDf"}

package/dist/commands/analyze.js

@@ -0,0 +1,62 @@
+import { join } from "node:path";
+import { buildSectionRegistry } from "../registry/build.js";
+import { bootstrapFromRegistry } from "./bootstrap.js";
+import { validateGraph, formatIssues } from "./validate.js";
+import { loadDocflowConfig } from "../config/load.js";
+import { resolveProjectPaths } from "../util/paths.js";
+import { pathExists, readJson, writeJson } from "../util/fs.js";
+import { runGraphMerge } from "./graph-merge.js";
+/**
+ * Prepare traceability graph structure (registry + bootstrap + validate).
+ * Semantic knowledge extraction runs in Cursor via /analyze + Graphify MCP.
+ */
+export async function runAnalyzePrep(root, opts = {}) {
+    const paths = await resolveProjectPaths(root);
+    const { root: projectRoot } = await loadDocflowConfig(root);
+    const registry = await buildSectionRegistry(projectRoot);
+    await writeJson(paths.registry, registry);
+    const graph = bootstrapFromRegistry(registry);
+    await writeJson(paths.graph, graph.toTraceabilityGraph());
+    const issues = await validateGraph({
+        graphPath: paths.graph,
+        schemaPath: paths.schema,
+        registryPath: paths.registry,
+        rulesPath: paths.rulesTraceability,
+    });
+    const errors = issues.filter((i) => i.severity === "error");
+    if (errors.length > 0) {
+        console.log(formatIssues(issues));
+        throw new Error("Graph validation failed after analyze prep");
+    }
+    const statePath = join(projectRoot, ".ai-spector/.docflow/state.json");
+    const state = await readJson(statePath).catch(() => ({
+        version: 1,
+        analysis: {},
+    }));
+    const analysis = state.analysis ?? {};
+    analysis.graphPreparedAt = new Date().toISOString();
+    state.analysis = analysis;
+    await writeJson(statePath, state);
+    const total = registry.documents.reduce((n, d) => n + d.sections.length, 0);
+    console.log(`Graph ready: ${registry.documents.length} documents, ${total} sections`);
+    console.log(`  registry → ${paths.registry}`);
+    console.log(`  graph    → ${paths.graph}`);
+    console.log("");
+    const knowledgePath = join(projectRoot, ".ai-spector/.docflow/analysis/knowledge.json");
+    const patchPath = join(projectRoot, ".ai-spector/.docflow/extract/patch.json");
+    if (opts.merge) {
+        if ((await pathExists(knowledgePath)) || (await pathExists(patchPath))) {
+            await runGraphMerge({ root: projectRoot });
+            console.log("");
+            console.log("Merged domain knowledge into graph.");
+        }
+        else {
+            console.log("");
+            console.log("Skip merge: no knowledge.json or extract/patch.json yet.");
+        }
+    }
+    console.log("");
+    console.log("Structure ready. In Cursor run:  /analyze");
+    console.log("(The /analyze agent runs merge, validate, and Graphify — not you.)");
+}
+//# sourceMappingURL=analyze.js.map

package/dist/commands/analyze.js.map

@@ -0,0 +1 @@
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package/dist/commands/bootstrap.d.ts

@@ -0,0 +1,4 @@
+import type { SectionRegistry } from "../types.js";
+import { InMemoryGraph } from "../graph/InMemoryGraph.js";
+export declare function bootstrapFromRegistry(registry: SectionRegistry): InMemoryGraph;
+//# sourceMappingURL=bootstrap.d.ts.map

package/dist/commands/bootstrap.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"bootstrap.d.ts","sourceRoot":"","sources":["../../src/commands/bootstrap.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AACnD,OAAO,EAAE,aAAa,EAAE,MAAM,2BAA2B,CAAC;AA4C1D,wBAAgB,qBAAqB,CAAC,QAAQ,EAAE,eAAe,GAAG,aAAa,CA4B9E"}

package/dist/commands/bootstrap.js

@@ -0,0 +1,58 @@
+import { InMemoryGraph } from "../graph/InMemoryGraph.js";
+import { emptyGraph } from "../graph/load.js";
+function documentNode(doc) {
+    return {
+        id: doc.documentId,
+        type: "document",
+        template: doc.template,
+        ...(doc.output ? { output: doc.output } : {}),
+        ...(doc.outputPattern ? { outputPattern: doc.outputPattern } : {}),
+        ...(doc.perDomain ? { perDomain: doc.perDomain } : {}),
+    };
+}
+function sectionNode(sec, documentId) {
+    return {
+        id: sec.id,
+        type: "section",
+        documentId,
+        heading: sec.heading,
+        level: sec.level,
+        order: sec.order,
+    };
+}
+function resolveParentId(sections, index) {
+    const current = sections[index];
+    if (current.level <= 2) {
+        return null;
+    }
+    for (let i = index - 1; i >= 0; i--) {
+        if (sections[i].level === current.level - 1) {
+            return sections[i].id;
+        }
+    }
+    return null;
+}
+export function bootstrapFromRegistry(registry) {
+    const graph = InMemoryGraph.from(emptyGraph());
+    for (const doc of registry.documents) {
+        graph.addNode(documentNode(doc));
+        for (let i = 0; i < doc.sections.length; i++) {
+            const sec = doc.sections[i];
+            graph.addNode(sectionNode(sec, doc.documentId));
+            const parentSectionId = resolveParentId(doc.sections, i);
+            const parentId = parentSectionId ?? doc.documentId;
+            const partOf = { type: "partOf", from: sec.id, to: parentId };
+            const contains = { type: "contains", from: parentId, to: sec.id };
+            graph.addEdge(partOf);
+            graph.addEdge(contains);
+            if (i > 0) {
+                const prev = doc.sections[i - 1];
+                if (prev.level === sec.level) {
+                    graph.addEdge({ type: "follows", from: prev.id, to: sec.id });
+                }
+            }
+        }
+    }
+    return graph;
+}
+//# sourceMappingURL=bootstrap.js.map

package/dist/commands/bootstrap.js.map

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