ai-factory 2.8.0 → 2.8.1

package/README.md

@@ -54,14 +54,17 @@ mise use -g npm:ai-factory
 ## Quick Start
 
 ```bash
-# In your project directory
+# In your project directory (interactive wizard)
 ai-factory init
+
+# Or non-interactive with flags
+ai-factory init --agents claude,codex --mcp playwright,github
 ```
 
 This will:
-- Ask which AI agent you use
-- Install relevant skills
-- Configure MCP servers (for supported agents)
+- Ask which AI agent you use (or use `--agents` flag)
+- Install relevant skills (or use `--skills` flag)
+- Configure MCP servers (or use `--mcp` flag)
 
 Then open your AI agent and start working:
 
@@ -81,6 +84,23 @@ Or running without installation via `npx`:
 npx ai-factory init
 ```
 
+### Non-interactive mode
+
+Pass `--agents` to skip the interactive wizard:
+
+```bash
+# Agents + MCP servers
+ai-factory init --agents claude,cursor --mcp github,playwright
+
+# With specific skills
+ai-factory init --agents claude --skills commit,plan
+
+# Without base skills
+ai-factory init --agents codex --no-skills --mcp github
+```
+
+Available MCP servers: `github`, `postgres`, `filesystem`, `chrome-devtools`, `playwright`
+
 ### Upgrading from v1 to v2
 
 ```bash
@@ -109,6 +129,9 @@ ai-factory upgrade
 # Execute the plan — implements tasks one by one, commits at checkpoints
 /aif-implement
 
+# Create a knowledge reference from docs AI doesn't know about
+/aif-reference https://docs.example.com/api-reference --name example-api
+
 # Fix a bug — AI learns from every fix and gets smarter over time
 /aif-fix TypeError: Cannot read property 'name' of undefined
 

package/dist/cli/commands/init.d.ts

@@ -1,2 +1,7 @@
-export declare function initCommand(): Promise<void>;
+export interface InitOptions {
+    agents?: string;
+    mcp?: string;
+    skills?: string | boolean;
+}
+export declare function initCommand(options?: InitOptions): Promise<void>;
 //# sourceMappingURL=init.d.ts.map

package/dist/cli/commands/init.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/init.ts"],"names":[],"mappings":"AAYA,MAAM,WAAW,WAAW;IAC1B,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC;CAC3B;AA+ED,wBAAsB,WAAW,CAAC,OAAO,GAAE,WAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAgL1E"}

package/dist/cli/commands/init.js

@@ -1,14 +1,69 @@
 import chalk from 'chalk';
 import path from 'path';
 import { runWizard } from '../wizard/prompts.js';
-import { buildManagedSkillsState, buildManagedSubagentsState, installSkills, installSubagents } from '../../core/installer.js';
+import { buildManagedSkillsState, buildManagedSubagentsState, installSkills, installSubagents, getAvailableSkills } from '../../core/installer.js';
 import { saveConfig, configExists, loadConfig, getCurrentVersion } from '../../core/config.js';
 import { configureMcp, getMcpInstructions } from '../../core/mcp.js';
-import { getAgentConfig } from '../../core/agents.js';
+import { getAgentConfig, getAvailableAgentIds } from '../../core/agents.js';
 import { cleanupAgentSetup, getAgentOnboarding } from '../../core/transformer.js';
 import { removeDirectory, removeFile } from '../../utils/fs.js';
 import { applyExtensionInjections } from '../../core/injections.js';
 import { collectReplacedSkills } from '../../core/extension-ops.js';
+const VALID_MCP_KEYS = {
+    github: 'mcpGithub',
+    postgres: 'mcpPostgres',
+    filesystem: 'mcpFilesystem',
+    'chrome-devtools': 'mcpChromeDevtools',
+    playwright: 'mcpPlaywright',
+};
+function buildAnswersFromFlags(options, availableSkills) {
+    const availableAgentIds = getAvailableAgentIds();
+    // Parse agents
+    const agentIds = options.agents.split(',').map(s => s.trim()).filter(Boolean);
+    const unknownAgents = agentIds.filter(id => !availableAgentIds.includes(id));
+    if (unknownAgents.length > 0) {
+        throw new Error(`Unknown agent(s): ${unknownAgents.join(', ')}. Available: ${availableAgentIds.join(', ')}`);
+    }
+    if (agentIds.length === 0) {
+        throw new Error(`At least one agent is required. Available: ${availableAgentIds.join(', ')}`);
+    }
+    // Parse MCP servers
+    const mcpKeys = options.mcp
+        ? options.mcp.split(',').map(s => s.trim()).filter(Boolean)
+        : [];
+    const unknownMcp = mcpKeys.filter(k => !(k in VALID_MCP_KEYS));
+    if (unknownMcp.length > 0) {
+        throw new Error(`Unknown MCP server(s): ${unknownMcp.join(', ')}. Available: ${Object.keys(VALID_MCP_KEYS).join(', ')}`);
+    }
+    // Parse skills
+    let selectedSkills;
+    if (options.skills === false) {
+        selectedSkills = [];
+    }
+    else if (typeof options.skills === 'string' && options.skills !== 'all') {
+        const skillIds = options.skills.split(',').map(s => s.trim()).filter(Boolean);
+        const unknownSkills = skillIds.filter(s => !availableSkills.includes(s));
+        if (unknownSkills.length > 0) {
+            const available = availableSkills.length > 0 ? availableSkills.join(', ') : '(none found — run without --skills to use all)';
+            throw new Error(`Unknown skill(s): ${unknownSkills.join(', ')}. Available: ${available}`);
+        }
+        selectedSkills = skillIds;
+    }
+    else {
+        selectedSkills = availableSkills;
+    }
+    // Build agent selections with MCP flags
+    const mcpSet = new Set(mcpKeys);
+    const agents = agentIds.map(id => ({
+        id,
+        mcpGithub: mcpSet.has('github'),
+        mcpFilesystem: mcpSet.has('filesystem'),
+        mcpPostgres: mcpSet.has('postgres'),
+        mcpChromeDevtools: mcpSet.has('chrome-devtools'),
+        mcpPlaywright: mcpSet.has('playwright'),
+    }));
+    return { selectedSkills, agents };
+}
 async function removeAgentSetup(projectDir, agent) {
     const agentConfig = getAgentConfig(agent.id);
     await removeDirectory(path.join(projectDir, agent.skillsDir));
@@ -23,8 +78,9 @@ async function removeAgentSetup(projectDir, agent) {
     }
     await cleanupAgentSetup(agent.id, projectDir, agent.skillsDir);
 }
-export async function initCommand() {
+export async function initCommand(options = {}) {
     const projectDir = process.cwd();
+    const nonInteractive = !!options.agents;
     console.log(chalk.bold.blue('\n🏭 AI Factory - Project Setup\n'));
     const hasExistingConfig = await configExists(projectDir);
     const existingConfig = hasExistingConfig ? await loadConfig(projectDir) : null;
@@ -34,7 +90,14 @@ export async function initCommand() {
     }
     try {
         const existingAgentIds = existingConfig?.agents.map(agent => agent.id) ?? [];
-        const answers = await runWizard(existingAgentIds);
+        let answers;
+        if (nonInteractive) {
+            const availableSkills = await getAvailableSkills();
+            answers = buildAnswersFromFlags(options, availableSkills);
+        }
+        else {
+            answers = await runWizard(existingAgentIds);
+        }
         const selectedAgentIds = new Set(answers.agents.map(agent => agent.id));
         const removedAgents = (existingConfig?.agents ?? []).filter(agent => !selectedAgentIds.has(agent.id));
         if (removedAgents.length > 0) {
@@ -153,10 +216,15 @@ export async function initCommand() {
         console.log('');
     }
     catch (error) {
-        if (error.message?.includes('User force closed')) {
+        const message = error.message ?? '';
+        if (message.includes('User force closed')) {
             console.log(chalk.yellow('\nSetup cancelled.'));
             return;
         }
+        if (nonInteractive && (message.startsWith('Unknown ') || message.startsWith('At least one '))) {
+            console.error(chalk.red(`\nError: ${message}`));
+            process.exit(1);
+        }
         throw error;
     }
 }

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package/dist/cli/index.js

@@ -13,6 +13,10 @@ program
 program
     .command('init')
     .description('Initialize ai-factory in current project')
+    .option('--agents <agents>', 'Comma-separated list of agents (e.g. claude,codex,cursor)')
+    .option('--mcp <servers>', 'Comma-separated list of MCP servers (e.g. github,playwright,postgres,filesystem,chrome-devtools)')
+    .option('--skills <skills>', 'Comma-separated list of skills or "all" for all skills (default: all)')
+    .option('--no-skills', 'Skip installing base skills')
     .action(initCommand);
 program
     .command('update')

package/dist/cli/index.js.map

@@ -1 +1 @@
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package/dist/cli/wizard/skill-hints.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"skill-hints.d.ts","sourceRoot":"","sources":["../../../src/cli/wizard/skill-hints.ts"],"names":[],"mappings":"AAqCA,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAEpD;AAED,wBAAgB,qBAAqB,CACjC,OAAO,EAAE,MAAM,EACf,UAAU,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,EACpC,aAAa,GAAE,MAAgC,GAChD,MAAM,CAGR"}
+{"version":3,"file":"skill-hints.d.ts","sourceRoot":"","sources":["../../../src/cli/wizard/skill-hints.ts"],"names":[],"mappings":"AAsCA,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAEpD;AAED,wBAAgB,qBAAqB,CACjC,OAAO,EAAE,MAAM,EACf,UAAU,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,EACpC,aAAa,GAAE,MAAgC,GAChD,MAAM,CAGR"}

package/dist/cli/wizard/skill-hints.js

@@ -15,6 +15,7 @@ const SKILL_HINTS = {
     'aif-improve': 'Improve existing plan quality',
     'aif-loop': 'Iterative quality refinement loop',
     'aif-plan': 'Plan tasks for feature',
+    'aif-reference': 'Create knowledge refs from URLs/docs',
     'aif-review': 'Review staged changes/PR',
     'aif-roadmap': 'Roadmap and milestones',
     'aif-rules': 'Project rules and conventions',

package/dist/cli/wizard/skill-hints.js.map

@@ -1 +1 @@
-{"version":3,"file":"skill-hints.js","sourceRoot":"","sources":["../../../src/cli/wizard/skill-hints.ts"],"names":[],"mappings":"AAAA,MAAM,WAAW,GAA2B;IACxC,KAAK,EAAE,mBAAmB;IAC1B,kBAAkB,EAAE,6BAA6B;IACjD,oBAAoB,EAAE,uBAAuB;IAC7C,sBAAsB,EAAE,uBAAuB;IAC/C,QAAQ,EAAE,sBAAsB;IAChC,YAAY,EAAE,4BAA4B;IAC1C,eAAe,EAAE,0BAA0B;IAC3C,UAAU,EAAE,iCAAiC;IAC7C,YAAY,EAAE,4BAA4B;IAC1C,aAAa,EAAE,2BAA2B;IAC1C,SAAS,EAAE,2BAA2B;IACtC,cAAc,EAAE,+BAA+B;IAC/C,eAAe,EAAE,4BAA4B;IAC7C,aAAa,EAAE,+BAA+B;IAC9C,UAAU,EAAE,mCAAmC;IAC/C,UAAU,EAAE,wBAAwB;IACpC,YAAY,EAAE,0BAA0B;IACxC,aAAa,EAAE,wBAAwB;IACvC,WAAW,EAAE,+BAA+B;IAC5C,wBAAwB,EAAE,0BAA0B;IACpD,qBAAqB,EAAE,2BAA2B;IAClD,YAAY,EAAE,oCAAoC;CACrD,CAAC;AAEF,MAAM,kBAAkB,GAAG,yBAAyB,CAAC;AACrD,MAAM,uBAAuB,GAAG,EAAE,CAAC;AAEnC,SAAS,YAAY,CAAC,IAAY,EAAE,SAAiB;IACjD,IAAI,IAAI,CAAC,MAAM,IAAI,SAAS,EAAE,CAAC;QAC3B,OAAO,IAAI,CAAC;IAChB,CAAC;IAED,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC;IACjE,OAAO,GAAG,IAAI,KAAK,CAAC;AACxB,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,OAAe;IACxC,OAAO,WAAW,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC;AACtD,CAAC;AAED,MAAM,UAAU,qBAAqB,CACjC,OAAe,EACf,UAAoC,EACpC,gBAAwB,uBAAuB;IAE/C,MAAM,IAAI,GAAG,YAAY,CAAC,YAAY,CAAC,OAAO,CAAC,EAAE,aAAa,CAAC,CAAC;IAChE,OAAO,GAAG,OAAO,IAAI,UAAU,CAAC,KAAK,IAAI,EAAE,CAAC,EAAE,CAAC;AACnD,CAAC"}
+{"version":3,"file":"skill-hints.js","sourceRoot":"","sources":["../../../src/cli/wizard/skill-hints.ts"],"names":[],"mappings":"AAAA,MAAM,WAAW,GAA2B;IACxC,KAAK,EAAE,mBAAmB;IAC1B,kBAAkB,EAAE,6BAA6B;IACjD,oBAAoB,EAAE,uBAAuB;IAC7C,sBAAsB,EAAE,uBAAuB;IAC/C,QAAQ,EAAE,sBAAsB;IAChC,YAAY,EAAE,4BAA4B;IAC1C,eAAe,EAAE,0BAA0B;IAC3C,UAAU,EAAE,iCAAiC;IAC7C,YAAY,EAAE,4BAA4B;IAC1C,aAAa,EAAE,2BAA2B;IAC1C,SAAS,EAAE,2BAA2B;IACtC,cAAc,EAAE,+BAA+B;IAC/C,eAAe,EAAE,4BAA4B;IAC7C,aAAa,EAAE,+BAA+B;IAC9C,UAAU,EAAE,mCAAmC;IAC/C,UAAU,EAAE,wBAAwB;IACpC,eAAe,EAAE,sCAAsC;IACvD,YAAY,EAAE,0BAA0B;IACxC,aAAa,EAAE,wBAAwB;IACvC,WAAW,EAAE,+BAA+B;IAC5C,wBAAwB,EAAE,0BAA0B;IACpD,qBAAqB,EAAE,2BAA2B;IAClD,YAAY,EAAE,oCAAoC;CACrD,CAAC;AAEF,MAAM,kBAAkB,GAAG,yBAAyB,CAAC;AACrD,MAAM,uBAAuB,GAAG,EAAE,CAAC;AAEnC,SAAS,YAAY,CAAC,IAAY,EAAE,SAAiB;IACjD,IAAI,IAAI,CAAC,MAAM,IAAI,SAAS,EAAE,CAAC;QAC3B,OAAO,IAAI,CAAC;IAChB,CAAC;IAED,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC;IACjE,OAAO,GAAG,IAAI,KAAK,CAAC;AACxB,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,OAAe;IACxC,OAAO,WAAW,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC;AACtD,CAAC;AAED,MAAM,UAAU,qBAAqB,CACjC,OAAe,EACf,UAAoC,EACpC,gBAAwB,uBAAuB;IAE/C,MAAM,IAAI,GAAG,YAAY,CAAC,YAAY,CAAC,OAAO,CAAC,EAAE,aAAa,CAAC,CAAC;IAChE,OAAO,GAAG,OAAO,IAAI,UAAU,CAAC,KAAK,IAAI,EAAE,CAAC,EAAE,CAAC;AACnD,CAAC"}

package/dist/core/agents.d.ts

@@ -13,4 +13,5 @@ export declare function getAgentChoices(): {
     name: string;
     value: string;
 }[];
+export declare function getAvailableAgentIds(): string[];
 //# sourceMappingURL=agents.d.ts.map

package/dist/core/agents.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"agents.d.ts","sourceRoot":"","sources":["../../src/core/agents.ts"],"names":[],"mappings":"AAAA,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,MAAM,CAAC;IACX,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,WAAW,EAAE,OAAO,CAAC;IACrB,cAAc,EAAE,MAAM,GAAG,IAAI,CAAC;CAC/B;AA6ID,wBAAgB,cAAc,CAAC,EAAE,EAAE,MAAM,GAAG,WAAW,CAMtD;AAED,wBAAgB,eAAe,IAAI;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,EAAE,CAKnE"}
+{"version":3,"file":"agents.d.ts","sourceRoot":"","sources":["../../src/core/agents.ts"],"names":[],"mappings":"AAAA,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,MAAM,CAAC;IACX,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,WAAW,EAAE,OAAO,CAAC;IACrB,cAAc,EAAE,MAAM,GAAG,IAAI,CAAC;CAC/B;AA6ID,wBAAgB,cAAc,CAAC,EAAE,EAAE,MAAM,GAAG,WAAW,CAMtD;AAED,wBAAgB,eAAe,IAAI;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,EAAE,CAKnE;AAED,wBAAgB,oBAAoB,IAAI,MAAM,EAAE,CAE/C"}

package/dist/core/agents.js

@@ -149,4 +149,7 @@ export function getAgentChoices() {
         value: agent.id,
     }));
 }
+export function getAvailableAgentIds() {
+    return Object.keys(AGENT_REGISTRY);
+}
 //# sourceMappingURL=agents.js.map

package/dist/core/agents.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "ai-factory",
-  "version": "2.8.0",
+  "version": "2.8.1",
   "type": "module",
   "description": "CLI tool for automating AI agent context setup in projects",
   "main": "dist/cli/index.js",

package/skills/aif-reference/SKILL.md

@@ -0,0 +1,270 @@
+---
+name: aif-reference
+description: >-
+  Create knowledge references from URLs, documents, or files for use by AI agents.
+  Fetches, processes, and stores structured references in .ai-factory/references/.
+  Use when the AI needs information it doesn't have — API docs, library guides,
+  specifications, internal wikis, or any external knowledge source.
+argument-hint: "<url|path> [url2|path2] [--name <ref-name>] [--update]"
+allowed-tools: Read Write Edit Glob Grep Bash(mkdir *) Bash(ls *) Bash(wc *) WebFetch WebSearch AskUserQuestion
+disable-model-invocation: false
+metadata:
+  author: ai-factory
+  version: "1.0"
+  category: knowledge-management
+---
+
+# Reference Creator
+
+You create structured knowledge references from external sources (URLs, documents, files) and store them in `.ai-factory/references/` so that AI agents can use this knowledge in future conversations.
+
+### Project Context
+
+**Read `.ai-factory/skill-context/aif-reference/SKILL.md`** — MANDATORY if the file exists.
+
+This file contains project-specific rules accumulated by `/aif-evolve` from patches,
+codebase conventions, and tech-stack analysis. These rules are tailored to the current project.
+
+**How to apply skill-context rules:**
+- Treat them as **project-level overrides** for this skill's general instructions
+- When a skill-context rule conflicts with a general rule written in this SKILL.md,
+  **the skill-context rule wins**
+- When there is no conflict, apply both
+- **CRITICAL:** skill-context rules apply to ALL outputs of this skill — including the generated
+  reference files. If a skill-context rule says "references MUST include X" — you MUST comply.
+
+**Enforcement:** After generating any output artifact, verify it against all skill-context rules.
+If any rule is violated — fix the output before presenting it to the user.
+
+---
+
+## When To Use
+
+- You need AI to know about a library/API/framework it wasn't trained on or has outdated knowledge of
+- You want to ground AI responses in specific documentation rather than general knowledge
+- You want to capture internal docs, wikis, or guides for AI use
+- You're preparing context for `/aif-plan` or `/aif-implement` that requires domain knowledge
+- You want a persistent, reusable knowledge artifact (not just a one-off conversation)
+
+---
+
+## Argument Detection
+
+```
+Check $ARGUMENTS:
+├── Contains "--update"         → Update Mode: refresh existing reference
+├── Contains URLs (http/https)  → URL Mode: fetch and process web sources
+├── Contains file paths         → File Mode: process local documents
+├── "list"                      → List existing references
+├── "show <name>"               → Show reference content
+├── "delete <name>"             → Delete a reference (with confirmation)
+└── Empty                       → Interactive: ask what to create
+```
+
+---
+
+## Workflow
+
+### Step 0: Setup
+
+Ensure `.ai-factory/references/` exists:
+```bash
+mkdir -p .ai-factory/references
+```
+
+Check for existing references to avoid duplicates:
+```bash
+ls .ai-factory/references/
+```
+
+If `--name <ref-name>` is provided in arguments, use that as the reference name.
+If `--update` is provided, find and update the existing reference instead of creating new.
+
+### Step 1: Collect Sources
+
+**For URLs:**
+
+For EACH URL provided:
+
+1. **Fetch the page** using `WebFetch`:
+   ```
+   WebFetch(url, "Extract ALL key information from this page:
+   - Main topic and purpose
+   - Key concepts, terms, and definitions
+   - Code examples and patterns (preserve exactly)
+   - API methods, parameters, return types, signatures
+   - Configuration options with defaults
+   - Best practices and recommendations
+   - Error handling and edge cases
+   - Version information and compatibility notes
+   - Links to critical sub-pages
+   Provide a comprehensive, structured extraction. Preserve code examples verbatim.")
+   ```
+
+2. **Assess depth** — if the page references critical sub-pages (API reference, detailed guides, changelogs), fetch those too (up to 8 additional pages per source URL, prioritize by relevance to the core topic).
+
+3. **Search for gaps** — run 1-2 targeted `WebSearch` queries if the fetched content has obvious gaps:
+   - `"<topic> API reference complete"` — for API docs
+   - `"<topic> migration guide"` or `"<topic> changelog"` — for version-specific info
+
+**For local files:**
+
+1. Read each file with the `Read` tool
+2. If the file references other local files, read those too (up to 5 levels of includes)
+3. Identify the file format (markdown, HTML, JSON, YAML, plain text) and extract accordingly
+
+**For interactive mode (no arguments):**
+
+Ask the user:
+1. What topic/technology do you want to create a reference for?
+2. Do you have URLs or local files, or should I search?
+3. What aspects are most important for your use case?
+
+If the user wants you to search, use `WebSearch` to find authoritative sources, then proceed with URL mode.
+
+### Step 2: Synthesize Reference
+
+Transform collected material into a structured reference document.
+
+**Reference file format:**
+
+```markdown
+# <Topic> Reference
+
+> Source: <list of source URLs or file paths>
+> Created: YYYY-MM-DD
+> Updated: YYYY-MM-DD
+
+## Overview
+
+<1-3 paragraph summary: what this is, when to use it, key characteristics>
+
+## Core Concepts
+
+<Concept 1>: <clear explanation>
+<Concept 2>: <clear explanation>
+...
+
+## API / Interface
+
+<Only if applicable. Method signatures, parameters, return types.>
+<Preserve exact signatures and types from source docs.>
+
+## Usage Patterns
+
+<Practical code examples organized by use case.>
+<Every example must be complete enough to be useful — not just fragments.>
+
+## Configuration
+
+<Options, defaults, valid values. Table format preferred.>
+
+## Best Practices
+
+<Numbered list with reasoning — not just "do X" but "do X because Y">
+
+## Common Pitfalls
+
+<What goes wrong and how to avoid it>
+
+## Version Notes
+
+<Only if relevant. Breaking changes, migration notes, deprecations.>
+```
+
+**Quality rules:**
+- **No hallucination** — only include information actually found in sources. If a topic wasn't covered, omit the section rather than guessing.
+- **Preserve code verbatim** — code examples from docs must be exact, not paraphrased.
+- **Actionable over academic** — write "Use X when..." not "X is a feature that..."
+- **Dense** — pack maximum useful information per line. This is a reference, not a tutorial.
+- **Complete signatures** — for APIs, include ALL parameters, types, and return types.
+- **Source attribution** — always include source URLs at the top.
+
+### Step 3: Name and Save
+
+**Naming convention:**
+- Derive from topic: `react-hooks.md`, `fastapi-endpoints.md`, `docker-compose.md`
+- Use lowercase, hyphens, `.md` extension
+- If `--name` was provided, use that (with `.md` extension if missing)
+- Avoid generic names like `reference.md` or `docs.md`
+
+**Save to:** `.ai-factory/references/<name>.md`
+
+### Step 4: Register in Index
+
+Check if `.ai-factory/references/INDEX.md` exists. Create or update it:
+
+```markdown
+# References Index
+
+Available knowledge references for AI agents.
+
+| Reference | Topic | Sources | Updated |
+|-----------|-------|---------|---------|
+| [react-hooks](react-hooks.md) | React Hooks API and patterns | react.dev | 2026-03-20 |
+| [docker-compose](docker-compose.md) | Docker Compose configuration | docs.docker.com | 2026-03-20 |
+```
+
+### Step 5: Report
+
+Show the user:
+- Reference name and path
+- Size (line count)
+- Sections included
+- Source URLs used
+- How to use it: mention that other skills can read `.ai-factory/references/<name>.md`
+
+---
+
+## Update Mode (`--update`)
+
+When `--update` is present:
+
+1. Find the existing reference (by `--name` or by matching source URLs in the header)
+2. Re-fetch the source URLs from the reference header
+3. Compare with existing content — only update sections that changed
+4. Preserve the `Created:` date, update `Updated:` date
+5. Report what changed
+
+---
+
+## List / Show / Delete
+
+**`/aif-reference list`** — read and display `.ai-factory/references/INDEX.md` or list files in the directory.
+
+**`/aif-reference show <name>`** — read and display the reference content. Add `.md` if missing.
+
+**`/aif-reference delete <name>`** — ask for confirmation, then delete the file and update INDEX.md.
+
+---
+
+## Integration With Other Skills
+
+References in `.ai-factory/references/` are available to all AI Factory skills:
+- `/aif-plan` and `/aif-implement` can read them for domain context
+- `/aif-grounded` can use them as evidence sources
+- `/aif-explore` can reference them during research
+
+To make a skill aware of a specific reference, mention it in `.ai-factory/RULES.md`:
+```markdown
+## References
+- For <topic> details, see `.ai-factory/references/<name>.md`
+```
+
+---
+
+## Artifact Ownership
+
+- **Primary ownership:** `.ai-factory/references/` (all files)
+- **Shared ownership:** `.ai-factory/references/INDEX.md`
+- **Read-only:** all other `.ai-factory/` files
+
+---
+
+## Guardrails
+
+- **Max reference size:** aim for under 1000 lines per reference. If larger, split into multiple files and create a directory: `.ai-factory/references/<topic>/` with an `INDEX.md` inside.
+- **No duplication** — before creating, check if a similar reference already exists.
+- **No stale data** — always include source URLs so references can be refreshed with `--update`.
+- **No opinions** — references state facts from sources, not the AI's preferences.
+- **Respect access** — if a URL requires authentication or returns errors, report this to the user instead of guessing content.

package/skills/aif-reference/references/EXAMPLES.md

@@ -0,0 +1,126 @@
+# Reference Examples
+
+Practical examples of `/aif-reference` usage and expected output.
+
+## Example 1: Single URL — Library Documentation
+
+**Input:**
+```
+/aif-reference https://zod.dev --name zod-validation
+```
+
+**Result:** `.ai-factory/references/zod-validation.md`
+
+```markdown
+# Zod Validation Reference
+
+> Source: https://zod.dev
+> Created: 2026-03-20
+> Updated: 2026-03-20
+
+## Overview
+
+Zod is a TypeScript-first schema declaration and validation library.
+Zero dependencies, works in Node.js and browsers. Use for runtime
+type validation, form parsing, API request/response validation.
+
+## Core Concepts
+
+- **Schema**: a validator object created with `z.<type>()` methods
+- **Parse**: `schema.parse(data)` throws on invalid, `safeParse` returns result object
+- **Infer**: `z.infer<typeof schema>` extracts TypeScript type from schema
+
+## API / Interface
+
+### Primitive schemas
+| Method | Validates |
+|--------|-----------|
+| `z.string()` | string |
+| `z.number()` | number |
+| `z.boolean()` | boolean |
+| `z.date()` | Date instance |
+| `z.undefined()` | undefined |
+| `z.null()` | null |
+| `z.any()` | any (no validation) |
+
+### String validations
+- `z.string().min(n)` — minimum length
+- `z.string().max(n)` — maximum length
+- `z.string().email()` — email format
+- `z.string().url()` — URL format
+- `z.string().regex(re)` — custom regex
+
+...
+```
+
+## Example 2: Multiple URLs — Cross-Referencing
+
+**Input:**
+```
+/aif-reference https://docs.astro.build/en/getting-started/ https://docs.astro.build/en/guides/content-collections/
+```
+
+**Result:** `.ai-factory/references/astro-framework.md`
+
+The skill merges content from both pages into a single coherent reference,
+noting which information came from which source when there are differences.
+
+## Example 3: Local File
+
+**Input:**
+```
+/aif-reference ./docs/api-spec.yaml --name internal-api
+```
+
+**Result:** `.ai-factory/references/internal-api.md`
+
+Reads the OpenAPI/Swagger spec and creates a human-readable reference
+with endpoints, parameters, response types, and example requests.
+
+## Example 4: Update Existing
+
+**Input:**
+```
+/aif-reference --update --name zod-validation
+```
+
+**Result:** re-fetches https://zod.dev (from the reference header),
+compares with existing content, updates changed sections, preserves
+creation date.
+
+## Example 5: Interactive Mode
+
+**Input:**
+```
+/aif-reference
+```
+
+**Result:** the skill asks what topic the user needs a reference for,
+whether they have specific URLs or want the AI to search, and what
+aspects matter most. Then proceeds with the standard workflow.
+
+## Example 6: Large Topic — Split Into Directory
+
+When a single reference exceeds ~1000 lines:
+
+```
+.ai-factory/references/kubernetes/
+├── INDEX.md          # Overview + links to sub-references
+├── pods.md           # Pod configuration and lifecycle
+├── services.md       # Service types and networking
+├── deployments.md    # Deployment strategies
+└── configmaps.md     # ConfigMaps and Secrets
+```
+
+## Reference Output Quality Checklist
+
+A good reference:
+- [ ] Has source URLs in the header
+- [ ] Has Created/Updated dates
+- [ ] Overview explains what + when to use in 1-3 paragraphs
+- [ ] Code examples are verbatim from source (not paraphrased)
+- [ ] API signatures include all parameters and types
+- [ ] Best practices include reasoning ("because...")
+- [ ] No hallucinated information — gaps are omitted, not filled
+- [ ] Under 1000 lines (or split into directory)
+- [ ] Registered in INDEX.md

package/subagents/best-practices-sidecar.md

@@ -3,7 +3,7 @@ name: best-practices-sidecar
 description: Read-only background best-practices sidecar for the current implementation scope. Use from implement-coordinator after code changes when a concise maintainability review is needed.
 tools: Read, Glob, Grep
 model: inherit
-permissionMode: dontAsk
+permissionMode: acceptEdits
 background: true
 maxTurns: 6
 skills:

package/subagents/commit-preparer.md

@@ -3,7 +3,7 @@ name: commit-preparer
 description: Read-only background commit preparation sidecar for the current implementation scope. Use from implement-coordinator when deciding whether a final /aif-commit step can be streamlined.
 tools: Read, Glob, Grep
 model: sonnet
-permissionMode: dontAsk
+permissionMode: acceptEdits
 background: true
 maxTurns: 6
 skills:

package/subagents/docs-auditor.md

@@ -3,7 +3,7 @@ name: docs-auditor
 description: Read-only background documentation drift sidecar for the current implementation scope. Use from implement-coordinator after code changes when deciding whether /aif-docs should run automatically.
 tools: Read, Glob, Grep
 model: sonnet
-permissionMode: dontAsk
+permissionMode: acceptEdits
 background: true
 maxTurns: 6
 skills:

package/subagents/implement-coordinator.md

@@ -178,6 +178,17 @@ After parallel workers complete:
 - If 2 consecutive layers fail, stop the entire run and report.
 - Always verify the merged result before proceeding to the next layer.
 
+## Post-implementation rules check
+
+After ALL tasks are completed and verified (before final output):
+
+1. Check if `.ai-factory/RULES.md` exists.
+2. If it exists — read it and verify that the implemented code satisfies all rules.
+3. If any rule is violated — fix the violation before producing the final summary.
+4. If a fix requires changing files modified by multiple workers, run a verification pass after the fix.
+
+This is the last quality gate before the run is considered complete.
+
 ## Output
 
 After each layer, print a progress table:

package/subagents/plan-coordinator.md

@@ -25,12 +25,14 @@ The user provides a planning request — the same input they would give to `/aif
 
 ## Configuration
 
-| Parameter | Default | Description |
-|-----------|---------|-------------|
-| max_iterations | 3 | Maximum critique→improve cycles |
-| mode | fast | Planning mode: `fast` or `full` |
+| Parameter      | Default | Description                                                          |
+|----------------|---------|----------------------------------------------------------------------|
+| max_iterations | 3       | Maximum critique→improve cycles                                      |
+| mode           | fast    | Planning mode: `fast` or `full`                                      |
+| tests          | infer   | Include test tasks: `yes`, `no`, or `infer` (auto-detect from project) |
+| docs           | infer   | Include docs tasks: `yes`, `no`, or `infer` (auto-detect from project) |
 
-Override via input: `max_iterations: 5, mode: full`
+Override via input: `max_iterations: 5, mode: full, tests: yes, docs: yes`
 
 ## Execution algorithm
 
@@ -64,6 +66,8 @@ report summary
   - plan file path (after first pass)
   - remaining issues from previous critique
   - `mode: fast` or `mode: full` (from user config or default)
+  - `tests: yes/no/infer` (from user config or default `infer`)
+  - `docs: yes/no/infer` (from user config or default `infer`)
 - Do NOT pass raw plan content — let plan-polisher read the file itself.
 - On the first dispatch, always include the mode explicitly so plan-polisher uses the correct file location.
 

package/subagents/plan-polisher.md

@@ -26,11 +26,13 @@ Repo-specific rules:
 
 Default decisions when the caller did not specify them:
 - mode: `fast`
-- tests: no
+- tests: **infer from project** — if the project already has a test suite (e.g. `tests/`, `__tests__/`, `*.test.*`, `*.spec.*`, test config files), default to `yes`; otherwise `no`
 - logging: verbose
-- docs: no / warn-only
+- docs: **infer from project** — if the project already has documentation infrastructure (e.g. `docs/`, `README.md` with structured sections, docstring conventions), default to `yes`; otherwise `no`
 - roadmap linkage: skip unless explicitly requested
 
+When the caller explicitly passes `tests` or `docs` values, always use those — never override with inference.
+
 **Mode override priority** (CRITICAL — this list wins over injected skill logic):
 - If the caller explicitly said `mode: fast` or `mode: full` → use that.
 - If the caller did NOT specify mode → default to `fast`. Do NOT fall through to the `/aif-plan` interactive mode-selection prompt — you are a subagent and cannot ask the user. Always apply `fast` as the default.

package/subagents/review-sidecar.md

@@ -3,7 +3,7 @@ name: review-sidecar
 description: Read-only background code review sidecar for the current implementation scope. Use from implement-coordinator after code changes when a concise bug-risk review is needed.
 tools: Read, Glob, Grep
 model: inherit
-permissionMode: dontAsk
+permissionMode: acceptEdits
 background: true
 maxTurns: 6
 skills:

package/subagents/security-sidecar.md

@@ -3,7 +3,7 @@ name: security-sidecar
 description: Read-only background security audit sidecar for the current implementation scope. Use from implement-coordinator after code changes when a concise security check is needed.
 tools: Read, Glob, Grep
 model: inherit
-permissionMode: dontAsk
+permissionMode: acceptEdits
 background: true
 maxTurns: 6
 skills: