ai-factory 1.9.1 → 2.1.0

package/README.md

@@ -1,4 +1,16 @@
-![logo](https://github.com/lee-to/ai-factory/raw/main/art/promo.png)
+<p align="center">
+  <a href="https://www.npmjs.com/package/ai-factory">
+    <img src="https://img.shields.io/npm/v/ai-factory?label=version" alt="Version" />
+  </a>
+  <a href="https://aif.cutcode.dev/">
+    <img src="https://img.shields.io/badge/official%20site-aif.cutcode.dev-0ea5e9" alt="Official Site" />
+  </a>
+  <a href="https://github.com/lee-to/ai-factory/actions/workflows/ci.yml">
+    <img src="https://img.shields.io/github/actions/workflow/status/lee-to/ai-factory/ci.yml?branch=2.x&label=tests" alt="Tests" />
+  </a>
+</p>
+
+![logo](https://github.com/lee-to/ai-factory/raw/2.x/art/promo.png)
 
 # AI Factory
 
@@ -21,18 +33,20 @@ ai-factory init
 - **Spec-driven development** — AI follows plans, not random exploration. Predictable, resumable, reviewable
 - **Community skills** — leverage [skills.sh](https://skills.sh) ecosystem or generate custom skills
 - **Works with your stack** — Next.js, Laravel, Django, Express, and more
-- **Multi-agent support** — Claude Code, Cursor, Windsurf, Roo Code, Kilo Code, Antigravity, OpenCode, Warp, Zencoder, Codex CLI, GitHub Copilot, Gemini CLI, Junie, or [any agent](docs/getting-started.md#supported-agents)
+- **Multi-agent support** — Claude Code, Cursor, Windsurf, Roo Code, Kilo Code, Antigravity, OpenCode, Warp, Zencoder, Codex CLI, GitHub Copilot, Gemini CLI, Junie, Qwen Code, or [any agent](docs/getting-started.md#supported-agents)
 
 ---
 
 ## Installation
 
 ### Using npm
+
 ```bash
 npm install -g ai-factory
 ```
 
 ### Using mise
+
 ```bash
 mise use -g npm:ai-factory
 ```
@@ -53,10 +67,9 @@ This will:
 Then open your AI agent and start working:
 
 ```
-/ai-factory
+/aif
 ```
 
-
 ## Usage
 
 If the package is installed:
@@ -69,26 +82,38 @@ Or running without installation via `npx`:
 npx ai-factory init
 ```
 
+### Upgrading from v1 to v2
+
+```bash
+# 1) Update the CLI package
+npm install -g ai-factory@latest
+
+# 2) Migrate existing skills to v2 naming
+ai-factory upgrade
+```
+
+`ai-factory upgrade` removes old bare-named skills (`commit`, `feature`, etc.) and installs new `aif-*` prefixed versions. Custom skills are preserved.
+
 ### Example Workflow
 
 ```bash
 # Plan a feature — creates branch, analyzes codebase, builds step-by-step plan
-/ai-factory.feature Add user authentication with OAuth
+/aif-plan Add user authentication with OAuth
 
 # Optionally refine the plan with deeper analysis
-/ai-factory.improve
+/aif-improve
 
 # Execute the plan — implements tasks one by one, commits at checkpoints
-/ai-factory.implement
+/aif-implement
 
 # Fix a bug — AI learns from every fix and gets smarter over time
-/ai-factory.fix TypeError: Cannot read property 'name' of undefined
+/aif-fix TypeError: Cannot read property 'name' of undefined
 
 # Set up CI pipeline — GitHub Actions or GitLab CI with linting, SA, tests
-/ai-factory.ci github
+/aif-ci github
 
 # Generate project documentation — README + docs/ with topics
-/ai-factory.docs
+/aif-docs
 ```
 
 See the full [Development Workflow](docs/workflow.md) with diagram and decision table.
@@ -98,13 +123,13 @@ See the full [Development Workflow](docs/workflow.md) with diagram and decision
 AI Factory can generate and maintain your project docs with a single command:
 
 ```bash
-/ai-factory.docs          # Creates README + docs/ structure from your codebase
-/ai-factory.docs --web    # Also generates a static HTML documentation site
+/aif-docs          # Creates README + docs/ structure from your codebase
+/aif-docs --web    # Also generates a static HTML documentation site
 ```
 
 - **Generates docs from scratch** — analyzes your codebase and creates a lean README + detailed `docs/` pages by topic
 - **Cleans up scattered files** — finds loose CONTRIBUTING.md, ARCHITECTURE.md, SETUP.md in your root and consolidates them into a structured `docs/` directory
-- **Keeps docs in sync** — integrates with `/ai-factory.implement` so documentation is updated automatically after each feature
+- **Keeps docs in sync** — integrates with `/aif-implement` so documentation is updated automatically after each feature
 - **Builds a docs website** — `--web` generates a static HTML site with navigation and dark mode, ready to host
 
 ---
@@ -115,6 +140,7 @@ AI Factory can generate and maintain your project docs with a single command:
 |-------|-------------|
 | [Getting Started](docs/getting-started.md) | What is AI Factory, supported agents, CLI commands |
 | [Development Workflow](docs/workflow.md) | Workflow diagram, when to use what, spec-driven approach |
+| [Reflex Loop](docs/loop.md) | Iterative generate → evaluate → critique → refine workflow |
 | [Core Skills](docs/skills.md) | All slash commands — feature, task, fix, implement, evolve, docs, and more |
 | [Plan Files](docs/plan-files.md) | Plan files, self-improvement patches, skill acquisition |
 | [Security](docs/security.md) | Two-level security scanning for external skills |
@@ -122,10 +148,11 @@ AI Factory can generate and maintain your project docs with a single command:
 
 ---
 
-![happy](https://github.com/lee-to/ai-factory/raw/main/art/happy.png)
+![happy](https://github.com/lee-to/ai-factory/raw/2.x/art/happy.png)
 
 ## Links
 
+- [Official Website](https://aif.cutcode.dev) - AI Factory website
 - [skills.sh](https://skills.sh) - Skill marketplace
 - [Agent Skills Spec](https://agentskills.io) - Skill specification
 - [Claude Code](https://claude.ai/code) - Anthropic's AI coding agent

package/dist/cli/commands/init.d.ts.map

@@ -1 +1 @@
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package/dist/cli/commands/init.js

@@ -2,76 +2,131 @@ import chalk from 'chalk';
 import path from 'path';
 import { runWizard } from '../wizard/prompts.js';
 import { installSkills } from '../../core/installer.js';
-import { createDefaultConfig, saveConfig, configExists } from '../../core/config.js';
+import { saveConfig, configExists, loadConfig, getCurrentVersion } from '../../core/config.js';
 import { configureMcp, getMcpInstructions } from '../../core/mcp.js';
 import { getAgentConfig } from '../../core/agents.js';
 import { getTransformer } from '../../core/transformer.js';
+import { WORKFLOW_SKILLS } from '../../core/transformer.js';
+import { fileExists, removeDirectory, removeFile } from '../../utils/fs.js';
+async function removeAgentSetup(projectDir, agent) {
+    const agentConfig = getAgentConfig(agent.id);
+    await removeDirectory(path.join(projectDir, agent.skillsDir));
+    if (agent.id === 'antigravity') {
+        const workflowsDir = path.join(projectDir, agentConfig.configDir, 'workflows');
+        for (const workflow of WORKFLOW_SKILLS) {
+            const workflowFile = path.join(workflowsDir, `${workflow}.md`);
+            if (await fileExists(workflowFile)) {
+                await removeFile(workflowFile);
+            }
+        }
+        for (const ruleFile of ['aif-guardrails.md', 'aif-conventions.md']) {
+            const rulePath = path.join(projectDir, agentConfig.configDir, 'rules', ruleFile);
+            if (await fileExists(rulePath)) {
+                await removeFile(rulePath);
+            }
+        }
+    }
+    // Keep agent settings file intact: it may contain user-managed configuration
+    // unrelated to AI Factory.
+}
 export async function initCommand() {
     const projectDir = process.cwd();
     console.log(chalk.bold.blue('\n🏭 AI Factory - Project Setup\n'));
-    if (await configExists(projectDir)) {
+    const hasExistingConfig = await configExists(projectDir);
+    const existingConfig = hasExistingConfig ? await loadConfig(projectDir) : null;
+    if (hasExistingConfig) {
         console.log(chalk.yellow('Warning: .ai-factory.json already exists.'));
-        console.log('Use "ai-factory update" to update existing skills.\n');
+        console.log('Running init will reconfigure selected agents (add/remove) and reinstall base skills.\n');
     }
     try {
-        const answers = await runWizard(projectDir);
+        const existingAgentIds = existingConfig?.agents.map(agent => agent.id) ?? [];
+        const answers = await runWizard(projectDir, existingAgentIds);
+        const selectedAgentIds = new Set(answers.agents.map(agent => agent.id));
+        const removedAgents = (existingConfig?.agents ?? []).filter(agent => !selectedAgentIds.has(agent.id));
+        if (removedAgents.length > 0) {
+            console.log(chalk.dim('\nRemoving deselected agent setups...\n'));
+            for (const removedAgent of removedAgents) {
+                await removeAgentSetup(projectDir, removedAgent);
+                console.log(chalk.yellow(`  Removed: ${removedAgent.id}`));
+            }
+        }
         console.log(chalk.dim('\nInstalling skills...\n'));
-        const installedSkills = await installSkills({
-            projectDir,
-            skillsDir: answers.skillsDir,
-            skills: answers.selectedSkills,
-            stack: null, // Stack-specific skills generated by /ai-factory in Claude
-            agentId: answers.agent,
-        });
-        const config = createDefaultConfig(answers.agent);
-        config.installedSkills = installedSkills;
-        config.mcp = {
-            github: answers.mcpGithub,
-            filesystem: answers.mcpFilesystem,
-            postgres: answers.mcpPostgres,
-        };
-        await saveConfig(projectDir, config);
-        console.log(chalk.green('✓ Configuration saved to .ai-factory.json'));
-        let configuredMcp = [];
-        if (answers.mcpGithub || answers.mcpFilesystem || answers.mcpPostgres || answers.mcpChromeDevtools) {
-            configuredMcp = await configureMcp(projectDir, {
-                github: answers.mcpGithub,
-                filesystem: answers.mcpFilesystem,
-                postgres: answers.mcpPostgres,
-                chromeDevtools: answers.mcpChromeDevtools,
-            }, answers.agent);
+        const installedAgents = [];
+        const mcpSummary = {};
+        for (const agentSelection of answers.agents) {
+            const agentConfig = getAgentConfig(agentSelection.id);
+            const installedSkills = await installSkills({
+                projectDir,
+                skillsDir: agentConfig.skillsDir,
+                skills: answers.selectedSkills,
+                stack: null, // Stack-specific skills generated by /aif in Claude
+                agentId: agentSelection.id,
+            });
+            const configuredMcp = await configureMcp(projectDir, {
+                github: agentSelection.mcpGithub,
+                filesystem: agentSelection.mcpFilesystem,
+                postgres: agentSelection.mcpPostgres,
+                chromeDevtools: agentSelection.mcpChromeDevtools,
+            }, agentSelection.id);
             if (configuredMcp.length > 0) {
-                console.log(chalk.green(`✓ MCP servers configured: ${configuredMcp.join(', ')}`));
+                mcpSummary[agentSelection.id] = configuredMcp;
             }
+            installedAgents.push({
+                id: agentSelection.id,
+                skillsDir: agentConfig.skillsDir,
+                installedSkills,
+                mcp: {
+                    github: agentSelection.mcpGithub,
+                    filesystem: agentSelection.mcpFilesystem,
+                    postgres: agentSelection.mcpPostgres,
+                    chromeDevtools: agentSelection.mcpChromeDevtools,
+                },
+            });
         }
+        await saveConfig(projectDir, {
+            version: getCurrentVersion(),
+            agents: installedAgents,
+        });
+        console.log(chalk.green('✓ Configuration saved to .ai-factory.json'));
         console.log(chalk.bold.green('\n✅ Setup complete!\n'));
-        console.log(chalk.bold('Installed skills:'));
-        for (const skill of installedSkills) {
-            console.log(chalk.dim(`  - ${skill}`));
-        }
-        console.log('');
-        console.log(chalk.dim(`Skills directory: ${path.join(projectDir, answers.skillsDir)}`));
-        if (configuredMcp.length > 0) {
-            console.log(chalk.bold('\nMCP Configuration:'));
-            const instructions = getMcpInstructions(configuredMcp);
-            for (const instruction of instructions) {
-                console.log(chalk.dim(`  ${instruction}`));
+        for (const agent of installedAgents) {
+            const agentConfig = getAgentConfig(agent.id);
+            console.log(chalk.bold(`${agentConfig.displayName}:`));
+            console.log(chalk.dim(`  Skills directory: ${path.join(projectDir, agent.skillsDir)}`));
+            console.log(chalk.dim(`  Installed skills: ${agent.installedSkills.length}`));
+            const configuredMcp = mcpSummary[agent.id];
+            if (configuredMcp && configuredMcp.length > 0) {
+                console.log(chalk.green(`  MCP servers configured: ${configuredMcp.join(', ')}`));
+                const instructions = getMcpInstructions(configuredMcp);
+                for (const instruction of instructions) {
+                    console.log(chalk.dim(`    ${instruction}`));
+                }
             }
+            console.log('');
         }
-        const agentConfig = getAgentConfig(answers.agent);
-        const transformer = getTransformer(answers.agent);
         console.log(chalk.bold('\nNext steps:'));
-        const welcomeMessage = transformer.getWelcomeMessage?.();
-        if (welcomeMessage) {
-            for (const line of welcomeMessage) {
-                console.log(chalk.dim(`  ${line}`));
+        const includesCodex = installedAgents.some(agent => agent.id === 'codex');
+        const includesQwen = installedAgents.some(agent => agent.id === 'qwen');
+        for (const [index, agent] of installedAgents.entries()) {
+            const agentConfig = getAgentConfig(agent.id);
+            const transformer = getTransformer(agent.id);
+            const welcomeMessage = transformer.getWelcomeMessage?.();
+            console.log(chalk.dim(`  ${index + 1}. ${agentConfig.displayName}`));
+            if (welcomeMessage) {
+                for (const line of welcomeMessage) {
+                    console.log(chalk.dim(`     ${line}`));
+                }
+            }
+            else {
+                console.log(chalk.dim('     Open the agent in this directory'));
+                console.log(chalk.dim('     Run /aif to analyze project and generate stack-specific skills'));
             }
         }
-        else {
-            console.log(chalk.dim(`  1. Open ${agentConfig.displayName} in this directory`));
-            console.log(chalk.dim('  2. Run /ai-factory to analyze project and generate stack-specific skills'));
-            console.log(chalk.dim('  3. Use /ai-factory.feature to start new features, /ai-factory.commit to commit'));
-        }
+        const invocationHints = [
+            includesCodex ? 'Codex CLI: $aif-plan, $aif-commit' : null,
+            includesQwen ? 'Qwen Code: /skills aif-plan, /skills aif-commit' : null,
+        ].filter(Boolean).join('; ');
+        console.log(chalk.dim(`  ${installedAgents.length + 1}. Use /aif-plan and /aif-commit for daily workflow${invocationHints ? ` (${invocationHints})` : ''}`));
         console.log('');
     }
     catch (error) {

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package/dist/cli/commands/update.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/update.ts"],"names":[],"mappings":"AAIA,wBAAsB,aAAa,IAAI,OAAO,CAAC,IAAI,CAAC,CA8DnD"}
+{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/update.ts"],"names":[],"mappings":"AAIA,wBAAsB,aAAa,IAAI,OAAO,CAAC,IAAI,CAAC,CAwEnD"}

package/dist/cli/commands/update.js

@@ -13,33 +13,44 @@ export async function updateCommand() {
     const currentVersion = getCurrentVersion();
     console.log(chalk.dim(`Config version: ${config.version}`));
     console.log(chalk.dim(`Package version: ${currentVersion}\n`));
-    // Check for new skills
-    const availableSkills = await getAvailableSkills();
-    const previousBaseSkills = config.installedSkills.filter(s => !s.includes('/'));
-    const newSkills = availableSkills.filter(s => !previousBaseSkills.includes(s));
-    if (newSkills.length > 0) {
-        console.log(chalk.cyan(`📦 New skills available: ${newSkills.join(', ')}\n`));
-    }
     console.log(chalk.dim('Updating skills...\n'));
     try {
-        const updatedSkills = await updateSkills(config, projectDir);
+        const availableSkills = await getAvailableSkills();
+        const previousBaseSkillsByAgent = new Map();
+        for (const agent of config.agents) {
+            const previousBaseSkills = agent.installedSkills.filter(s => !s.includes('/'));
+            previousBaseSkillsByAgent.set(agent.id, previousBaseSkills);
+            const newSkills = availableSkills.filter(s => !previousBaseSkills.includes(s));
+            if (newSkills.length > 0) {
+                console.log(chalk.cyan(`📦 [${agent.id}] New skills available: ${newSkills.join(', ')}`));
+            }
+        }
+        if (config.agents.length > 0) {
+            console.log('');
+        }
+        for (const agent of config.agents) {
+            const updatedSkills = await updateSkills(agent, projectDir);
+            agent.installedSkills = updatedSkills;
+        }
         config.version = currentVersion;
-        config.installedSkills = updatedSkills;
         await saveConfig(projectDir, config);
         console.log(chalk.green('✓ Skills updated successfully'));
         console.log(chalk.green('✓ Configuration updated'));
-        // Separate base skills and custom skills for display
-        const baseSkills = updatedSkills.filter(s => !s.includes('/'));
-        const customSkills = updatedSkills.filter(s => s.includes('/'));
-        console.log(chalk.bold('\nBase skills:'));
-        for (const skill of baseSkills) {
-            const isNew = newSkills.includes(skill);
-            console.log(chalk.dim(`  - ${skill}`) + (isNew ? chalk.green(' (new)') : ''));
-        }
-        if (customSkills.length > 0) {
-            console.log(chalk.bold('\nCustom skills (preserved):'));
-            for (const skill of customSkills) {
-                console.log(chalk.dim(`  - ${skill}`));
+        for (const agent of config.agents) {
+            const previousBaseSkills = previousBaseSkillsByAgent.get(agent.id) ?? [];
+            const newSkills = availableSkills.filter(s => !previousBaseSkills.includes(s));
+            const baseSkills = agent.installedSkills.filter(s => !s.includes('/'));
+            const customSkills = agent.installedSkills.filter(s => s.includes('/'));
+            console.log(chalk.bold(`\n[${agent.id}] Base skills:`));
+            for (const skill of baseSkills) {
+                const isNew = newSkills.includes(skill);
+                console.log(chalk.dim(`  - ${skill}`) + (isNew ? chalk.green(' (new)') : ''));
+            }
+            if (customSkills.length > 0) {
+                console.log(chalk.bold(`[${agent.id}] Custom skills (preserved):`));
+                for (const skill of customSkills) {
+                    console.log(chalk.dim(`  - ${skill}`));
+                }
             }
         }
         console.log('');

package/dist/cli/commands/update.js.map

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package/dist/cli/commands/upgrade.d.ts

@@ -0,0 +1,2 @@
+export declare function upgradeCommand(): Promise<void>;
+//# sourceMappingURL=upgrade.d.ts.map

package/dist/cli/commands/upgrade.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/commands/upgrade.js

@@ -0,0 +1,179 @@
+import chalk from 'chalk';
+import fs from 'fs-extra';
+import path from 'path';
+import { loadConfig, saveConfig, getCurrentVersion } from '../../core/config.js';
+import { installSkills, getAvailableSkills } from '../../core/installer.js';
+import { getAgentConfig } from '../../core/agents.js';
+import { fileExists, removeDirectory, removeFile } from '../../utils/fs.js';
+// Old v1 skill directory names that were renamed to aif-* in v2
+const OLD_SKILL_NAMES = [
+    'architecture',
+    'best-practices',
+    'build-automation',
+    'ci',
+    'commit',
+    'deploy',
+    'dockerize',
+    'docs',
+    'evolve',
+    'feature',
+    'fix',
+    'implement',
+    'improve',
+    'review',
+    'security-checklist',
+    'skill-generator',
+    'task',
+    'verify',
+];
+// Old v2 skill directory names before aif-* migration
+const OLD_AIF_PREFIX_SKILL_NAMES = [
+    'ai-factory',
+    'ai-factory-architecture',
+    'ai-factory-best-practices',
+    'ai-factory-build-automation',
+    'ai-factory-ci',
+    'ai-factory-commit',
+    'ai-factory-deploy',
+    'ai-factory-dockerize',
+    'ai-factory-docs',
+    'ai-factory-evolve',
+    'ai-factory-fix',
+    'ai-factory-implement',
+    'ai-factory-improve',
+    'ai-factory-plan',
+    'ai-factory-review',
+    'ai-factory-roadmap',
+    'ai-factory-rules',
+    'ai-factory-security-checklist',
+    'ai-factory-skill-generator',
+    'ai-factory-verify',
+    // Transitional names that were removed earlier
+    'ai-factory-task',
+    'ai-factory-feature',
+];
+// Old workflow skills stored as flat .md files by Antigravity transformer
+const OLD_WORKFLOW_SKILLS = new Set([
+    'commit',
+    'deploy',
+    'feature',
+    'fix',
+    'implement',
+    'improve',
+    'task',
+    'verify',
+]);
+export async function upgradeCommand() {
+    const projectDir = process.cwd();
+    console.log(chalk.bold.blue('\n🏭 AI Factory - Upgrade to v2\n'));
+    const config = await loadConfig(projectDir);
+    if (!config) {
+        console.log(chalk.red('Error: No .ai-factory.json found.'));
+        console.log(chalk.dim('Run "ai-factory init" to set up your project first.'));
+        process.exit(1);
+    }
+    if (config.agents.length === 0) {
+        console.log(chalk.red('Error: No agents configured in .ai-factory.json.'));
+        console.log(chalk.dim('Run "ai-factory init" to configure at least one agent.'));
+        process.exit(1);
+    }
+    // Step 1: Migrate legacy plan directories to .ai-factory/plans/
+    const featuresDir = path.join(projectDir, '.ai-factory', 'features');
+    const changesDir = path.join(projectDir, '.ai-factory', 'changes');
+    const plansDir = path.join(projectDir, '.ai-factory', 'plans');
+    if (await fileExists(changesDir) && !(await fileExists(plansDir))) {
+        await fs.move(changesDir, plansDir);
+        console.log(chalk.green('✓ Renamed .ai-factory/changes/ → .ai-factory/plans/\n'));
+    }
+    if (await fileExists(featuresDir) && !(await fileExists(plansDir))) {
+        await fs.move(featuresDir, plansDir);
+        console.log(chalk.green('✓ Renamed .ai-factory/features/ → .ai-factory/plans/\n'));
+    }
+    const availableSkills = await getAvailableSkills();
+    for (const agent of config.agents) {
+        const agentConfig = getAgentConfig(agent.id);
+        const skillsDir = path.join(projectDir, agent.skillsDir);
+        const isAntigravity = agent.id === 'antigravity';
+        let removedCount = 0;
+        console.log(chalk.dim(`Scanning for old-format skills [${agent.id}]...\n`));
+        for (const oldName of OLD_SKILL_NAMES) {
+            // Antigravity: old workflow skills were flat files in workflows/
+            if (isAntigravity && OLD_WORKFLOW_SKILLS.has(oldName)) {
+                const flatFile = path.join(projectDir, agentConfig.configDir, 'workflows', `${oldName}.md`);
+                if (await fileExists(flatFile)) {
+                    await removeFile(flatFile);
+                    console.log(chalk.yellow(`  [${agent.id}] Removed workflow: ${oldName}.md`));
+                    removedCount++;
+                }
+            }
+            // All agents: remove old skill directory
+            const oldDir = path.join(skillsDir, oldName);
+            if (await fileExists(oldDir)) {
+                await removeDirectory(oldDir);
+                console.log(chalk.yellow(`  [${agent.id}] Removed skill: ${oldName}/`));
+                removedCount++;
+            }
+        }
+        // Remove old aif-task, aif-feature, and ai-factory-* skills
+        const obsoleteSkills = [
+            'aif-task', 'aif-feature',
+            ...OLD_SKILL_NAMES.map(n => `ai-factory-${n}`),
+            ...OLD_AIF_PREFIX_SKILL_NAMES,
+        ];
+        for (const oldSkill of obsoleteSkills) {
+            const oldDir = path.join(skillsDir, oldSkill);
+            if (await fileExists(oldDir)) {
+                await removeDirectory(oldDir);
+                console.log(chalk.yellow(`  [${agent.id}] Removed skill: ${oldSkill}/`));
+                removedCount++;
+            }
+            // Antigravity: remove flat workflow files
+            if (isAntigravity) {
+                const flatFile = path.join(projectDir, agentConfig.configDir, 'workflows', `${oldSkill}.md`);
+                if (await fileExists(flatFile)) {
+                    await removeFile(flatFile);
+                    console.log(chalk.yellow(`  [${agent.id}] Removed workflow: ${oldSkill}.md`));
+                    removedCount++;
+                }
+            }
+        }
+        if (removedCount === 0) {
+            console.log(chalk.dim(`  [${agent.id}] No old-format skills found.\n`));
+        }
+        else {
+            console.log(chalk.dim(`\n  [${agent.id}] Removed ${removedCount} old-format skill(s).\n`));
+        }
+        console.log(chalk.dim(`Installing new-format skills [${agent.id}]...\n`));
+        const customSkills = agent.installedSkills.filter(s => s.includes('/'));
+        const installedSkills = await installSkills({
+            projectDir,
+            skillsDir: agent.skillsDir,
+            skills: availableSkills,
+            stack: null,
+            agentId: agent.id,
+        });
+        agent.installedSkills = [...installedSkills, ...customSkills];
+    }
+    // Step 3: Update config to latest version and multi-agent schema
+    const currentVersion = getCurrentVersion();
+    config.version = currentVersion;
+    await saveConfig(projectDir, config);
+    // Step 4: Summary
+    console.log(chalk.green('✓ Upgrade to v2 complete!\n'));
+    for (const agent of config.agents) {
+        const baseSkills = agent.installedSkills.filter(s => !s.includes('/'));
+        const customSkills = agent.installedSkills.filter(s => s.includes('/'));
+        console.log(chalk.bold(`[${agent.id}] Installed skills:`));
+        for (const skill of baseSkills) {
+            console.log(chalk.dim(`  - ${skill}`));
+        }
+        if (customSkills.length > 0) {
+            console.log(chalk.bold(`[${agent.id}] Custom skills (preserved):`));
+            for (const skill of customSkills) {
+                console.log(chalk.dim(`  - ${skill}`));
+            }
+        }
+        console.log('');
+    }
+}
+//# sourceMappingURL=upgrade.js.map