ai-dev-analytics 1.1.12 → 2.0.1

package/dist/cli/commands/doctor.js

@@ -0,0 +1,125 @@
+import { green, red, yellow, cyan, dim } from '../../utils/display.js';
+import { configPath } from '../../utils/paths.js';
+import { fileExists } from '../../utils/fs.js';
+import { inspectProject, inspectSecurity, normalizeProject } from '../../services/project-health.js';
+function hasFixFlag() {
+    return process.argv.slice(3).includes('--fix');
+}
+function securityMode() {
+    const arg = process.argv.slice(3).find((item) => item === '--security' || item.startsWith('--security='));
+    if (!arg)
+        return null;
+    if (arg === '--security')
+        return 'all';
+    const value = arg.split('=')[1]?.trim();
+    if (value === 'npm' || value === 'skills')
+        return value;
+    return 'all';
+}
+function line(ok, label, detail) {
+    console.log(`${ok ? green('  ✓') : yellow('  !')} ${label}: ${detail}`);
+}
+export async function doctor() {
+    const projectRoot = process.cwd();
+    console.log(cyan('\n  AIDA Doctor\n'));
+    if (!fileExists(configPath(projectRoot))) {
+        console.log(red('  AIDA not initialized. Run `npx aida init` first.\n'));
+        return;
+    }
+    const fix = hasFixFlag();
+    if (fix) {
+        const normalized = normalizeProject(projectRoot);
+        console.log(green('  ✓ Normalized truth sources'));
+        console.log(`    config: ${normalized.configUpgraded ? 'upgraded to latest 2.0 shape' : 'already current'}`);
+        console.log(`    rules: ${normalized.rules}`);
+        console.log(`    skills: ${normalized.skills}`);
+        console.log(`    memories: ${normalized.memories}`);
+        console.log(`    summary: ${normalized.summary}`);
+        console.log('');
+    }
+    const { report, similarRules } = inspectProject(projectRoot);
+    const mode = securityMode();
+    line(report.rules.exists && !report.rules.legacyRoot, 'rules.json', `${report.rules.count} entries`);
+    line(report.skills.exists && !report.skills.legacyRoot, 'skills.json', `${report.skills.count} entries`);
+    line(report.memories.indexExists && !report.memories.indexLegacyRoot && !report.memories.nestedLayout, 'memories', `${report.memories.moduleCount} modules`);
+    line(report.summary.exists, 'summary.json', `${report.summary.count} summaries`);
+    line(!report.runs.runtimeDirExists && report.runs.legacySchema === 0, 'legacy runtime', report.runs.runtimeDirExists ? '.aida/runs still exists' : 'clean');
+    line(similarRules.length === 0, 'rule duplicates', similarRules.length === 0 ? 'no near-duplicate rules' : `${similarRules.length} potential pair(s)`);
+    const healthOk = report.warnings.length === 0 && similarRules.length === 0;
+    if (healthOk) {
+        console.log(green('\n  ✓ Project health looks good.'));
+        if (!mode) {
+            console.log('');
+            return;
+        }
+    }
+    if (report.warnings.length > 0) {
+        console.log(yellow('\n  Warnings'));
+        for (const warning of report.warnings) {
+            console.log(`  - ${warning}`);
+        }
+    }
+    if (similarRules.length > 0) {
+        console.log(yellow(`\n  Potential duplicate rules (${similarRules.length})`));
+        for (const { a, b, similarity } of similarRules) {
+            const pct = Math.round(similarity * 100);
+            console.log(`  - ${a.id} ↔ ${b.id} (${pct}% similar)`);
+            console.log(`    A: ${a.content}`);
+            console.log(`    B: ${b.content}`);
+        }
+    }
+    if (mode) {
+        const security = inspectSecurity(projectRoot, mode);
+        if (security.packageAudit) {
+            const { findings, warnings, scannedTargets, osvScanned } = security.packageAudit;
+            console.log(yellow(`\n  Package security audit (${scannedTargets.length} target(s)${osvScanned ? ', OSV enabled' : ''})`));
+            if (findings.length === 0 && warnings.length === 0) {
+                console.log('  - No package security warnings detected.');
+            }
+            else {
+                for (const warning of warnings) {
+                    console.log(`  - ${warning.message}`);
+                }
+                for (const finding of findings) {
+                    console.log(`  - [${finding.severity}] ${finding.packageName} (${finding.id}) via ${finding.source} @ ${finding.workspacePath}`);
+                    console.log(`    ${finding.title}`);
+                }
+            }
+        }
+        if (security.skillAudit) {
+            const { findings, warnings, scannedPaths, configuredPaths } = security.skillAudit;
+            console.log(yellow(`\n  Skill security audit (${scannedPaths.length}/${configuredPaths.length} path(s) scanned)`));
+            if (findings.length === 0 && warnings.length === 0) {
+                console.log('  - No skill risk warnings detected.');
+            }
+            else {
+                for (const warning of warnings) {
+                    console.log(`  - ${warning.message}`);
+                }
+                for (const finding of findings) {
+                    console.log(`  - ${finding.skillName} @ ${finding.sourcePath}`);
+                    for (const issue of finding.issues) {
+                        console.log(`    [${issue.type}] ${issue.filePath} -> ${issue.signal}`);
+                    }
+                }
+            }
+        }
+    }
+    console.log('');
+    if (report.runs.legacySchema > 0 || report.runs.runtimeDirExists) {
+        console.log(dim('\n  Run `aida doctor --fix` to normalize 2.0 truth sources and remove legacy runtime artifacts.\n'));
+    }
+    else if (similarRules.length > 0) {
+        console.log(dim('  Review the pairs above. Keep both if they are materially different; merge or deprecate one if they are duplicates.\n'));
+    }
+    else if (mode) {
+        console.log(dim('  Security audit warnings are advisory only. Review suspicious dependencies, scripts, and external requests manually.\n'));
+    }
+    else if (!fix) {
+        console.log(dim('\n  Run `aida doctor --fix` to normalize JSON truth sources and rebuild summary/index.\n'));
+    }
+    else {
+        console.log('');
+    }
+}
+//# sourceMappingURL=doctor.js.map

package/dist/cli/commands/doctor.js.map

@@ -0,0 +1 @@
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package/dist/cli/commands/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/init.ts"],"names":[],"mappings":"AAgHA,wBAAsB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC,CAqO1C"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/init.ts"],"names":[],"mappings":"AAwCA,wBAAsB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC,CA0J1C"}

package/dist/cli/commands/init.js

@@ -1,50 +1,12 @@
 import { resolve } from 'node:path';
-import { ensureDir, writeText, readText, fileExists, getProjectName, writeJson, } from '../../utils/fs.js';
+import { ensureDir, readText, fileExists, getProjectName, writeJson, } from '../../utils/fs.js';
 import { bold, green, cyan, dim, yellow } from '../../utils/display.js';
 import { addRule } from '../../utils/rules.js';
 import { ensureGuide, syncGuideReference, updateGuide, updateGuideReferences } from '../../utils/guide.js';
-import { ensureBundledSkills, seedBundledSkillRegistry, getSkillContent } from '../../utils/skills.js';
 import { buildProjectArtifacts } from '../../utils/ai-build.js';
 import { detectClosedLoopImportableTools, importExistingToolConfigs, importFromTool, mergeConfiguredTools } from '../../utils/import.js';
 import { promptMultiSelect, promptSingleSelect, promptText } from '../../utils/prompt.js';
-const QUICK_COMMANDS = [
-    { name: 'workflow', skill: 'workflow-orchestrator' },
-    { name: 'audit', skill: 'audit' },
-    { name: 'deviation', skill: 'deviation-recorder' },
-    { name: 'self-reviewer', skill: 'self-reviewer' },
-    { name: 'bug-fixer', skill: 'bug-fixer' },
-    { name: 'rules-evolver', skill: 'rules-evolver' },
-];
-const OPTIONAL_COMMANDS = [
-    { name: 'commit-code', skill: 'commit-code', desc: 'Git commit assistant' },
-    { name: 'docx-to-markdown', skill: 'docx-to-markdown', desc: 'Convert DOCX to Markdown' },
-];
-const ALL_SKILLS = [
-    'workflow-orchestrator',
-    'requirement-analyzer',
-    'task-splitter',
-    'code-generator',
-    'self-reviewer',
-    'bug-fixer',
-    'deviation-recorder',
-    'dashboard-generator',
-    'commit-code',
-    'docx-to-markdown',
-    'mcp-reviewer',
-    'rules-evolver',
-    'dev-flower',
-    'audit',
-];
-const IRON_RULES_APPEND = `
-
-## AIDevOS Iron Rules
-
-1. 禁止任何形式的臆想，不清楚必须询问
-2. 禁止随意生成文档，如需生成文档，必须询问用户是否需要
-3. 生成测试脚本，在测试验证通过后必须删除测试脚本，保持项目清爽
-4. 只有当修改实际落到项目仓库代码或配置后，才进入 AIDA task flow；纯调查、只读分析、聊天、git 历史排查、本地环境操作、不会落库的实验都不记录 task/context/memory
-5. 当用户直接要求沉淀项目级技术规范，或识别到 rule-missing 需要沉淀规则时，必须通过 AIDA MCP 的 aida_log_rule 写入 .aida/rules.json，不要只修改本地规则说明文件
-`;
+import { defaultSkillScanPaths } from '../../services/security-audit.js';
 function printManualUntrackNotice() {
     console.log(dim('  Note: If any ignored AI files were already tracked by git before init, untrack them manually.'));
     console.log(dim('        Example: git rm --cached .mcp.json AGENTS.md CLAUDE.md\n'));
@@ -63,37 +25,11 @@ function toolLabel(tool) {
 function toolOptions(tools) {
     return tools.map((tool) => ({ value: tool, label: toolLabel(tool) }));
 }
-function copyOptionalCommands(projectRoot, tools, commands) {
-    let copied = 0;
-    if (tools.includes('claude-code')) {
-        const cmdDir = resolve(projectRoot, '.claude', 'commands');
-        ensureDir(cmdDir);
-        for (const cmd of commands) {
-            const content = getSkillContent(projectRoot, cmd.skill);
-            if (!content)
-                continue;
-            writeText(resolve(cmdDir, `${cmd.name}.md`), content);
-            copied++;
-        }
-    }
-    if (tools.includes('cursor')) {
-        for (const cmd of commands) {
-            const content = getSkillContent(projectRoot, cmd.skill);
-            if (!content)
-                continue;
-            const destDir = resolve(projectRoot, '.cursor', 'skills', cmd.name);
-            ensureDir(destDir);
-            writeText(resolve(destDir, 'SKILL.md'), content);
-            copied++;
-        }
-    }
-    return copied;
-}
 // ─── Init command ────────────────────────────────────────
 export async function init() {
     const projectRoot = process.cwd();
     const aidevos = resolve(projectRoot, '.aida');
-    console.log(`\n  ${bold('AIDA')} - AI Development Observability Platform\n`);
+    console.log(`\n  ${bold('AIDA')} - Project AI truth-source setup\n`);
     // Check if already initialized
     if (fileExists(resolve(aidevos, 'config.json'))) {
         console.log(yellow('  AIDA is already initialized in this project.\n'));
@@ -112,7 +48,6 @@ export async function init() {
         // ── Option 2: Repair missing files ──────────────────
         if (choice === 'repair') {
             console.log('\n  Repairing...\n');
-            ensureDir(resolve(aidevos, 'runs'));
             const repaired = buildProjectArtifacts(projectRoot, existingTools);
             updateGuide(projectRoot);
             updateGuideReferences(projectRoot, existingTools);
@@ -132,48 +67,26 @@ export async function init() {
         existingConfig.aiTools = [...existingTools, ...newTools];
         writeJson(resolve(aidevos, 'config.json'), existingConfig);
         const built = buildProjectArtifacts(projectRoot, newTools);
-        if (existingConfig.mode === 'full') {
-            seedBundledSkillRegistry(projectRoot);
-        }
         console.log(green('\n  ✓ Built') + ` ${built.tools.join(', ')} artifacts`);
         console.log(green('\n  ✓ Done!') + ' New tool(s) added successfully.\n');
         return;
     }
-    // Step 1: Select mode
-    const mode = await promptSingleSelect('Select mode:', [
-        { value: 'collect', label: 'Data collection only', hint: 'MCP, recommended for existing workflows' },
-        { value: 'full', label: 'Full workflow', hint: 'MCP + Skills + slash commands' },
-    ]);
-    if (!mode) {
-        console.log(dim('\n  No changes made.\n'));
-        return;
-    }
-    // Step 2: Select AI tools (multi-select)
+    const mode = 'collect';
+    // Step 1: Select AI tools (multi-select)
     const selectedTools = await promptMultiSelect('Which AI tools do you use?', toolOptions(['claude-code', 'cursor', 'vscode-copilot', 'windsurf', 'lingma', 'codex']), { required: true });
     const importableTools = detectClosedLoopImportableTools(projectRoot, selectedTools);
     let baselineTool = null;
     if (importableTools.length > 0) {
         baselineTool = await promptSingleSelect('Found existing closed-loop tool rules/skills/config. Choose one baseline tool to import into AIDA JSON:', toolOptions(importableTools), { allowSkip: true });
     }
-    // Step 3: AI model (only for full mode)
+    // Step 2: Optional AI model
     let aiModel = '';
-    if (mode === 'full') {
-        console.log('\n  ? Which AI model are you using? (e.g. claude-sonnet-4, gpt-4o)\n');
-        console.log(dim('    Press Enter to skip, you can set it later.\n'));
-        aiModel = await promptText('  > ');
-    }
-    // Step 4: Optional tools (only for full mode)
-    const selectedOptional = [];
-    if (mode === 'full') {
-        const optionalValues = await promptMultiSelect('Optional tools:', OPTIONAL_COMMANDS.map((cmd) => ({ value: cmd.name, label: cmd.name, hint: cmd.desc })), { required: false });
-        for (const cmd of OPTIONAL_COMMANDS) {
-            if (optionalValues.includes(cmd.name))
-                selectedOptional.push(cmd);
-        }
-    }
-    console.log(`\n  Initializing AIDevOS...\n`);
+    console.log('\n  ? Which AI model are you using? (e.g. claude-sonnet-4, gpt-4o)\n');
+    console.log(dim('    Press Enter to skip, you can set it later.\n'));
+    aiModel = await promptText('  > ');
+    console.log(`\n  Initializing AIDA 2.0...\n`);
     // 1. Create directory structure
-    ensureDir(resolve(aidevos, 'runs'));
+    ensureDir(aidevos);
     console.log(green('  ✓ Created') + ' .aida/');
     // 3. Seed iron rules into rules.json registry
     const ironRules = [
@@ -193,24 +106,16 @@ export async function init() {
         });
     }
     console.log(green('  ✓ Created') + ' .aida/rules.json       (with 4 iron rules)');
-    // 6. Full mode: copy skills + slash commands
-    if (mode === 'full') {
-        if (baselineTool) {
-            const bundled = ensureBundledSkills(projectRoot);
-            console.log(green('  ✓ Synced') + ` bundled skills into skills.json (+${bundled.added})`);
-        }
-        else {
-            seedBundledSkillRegistry(projectRoot);
-            console.log(green('  ✓ Created') + ' .aida/skills.json     (skills source of truth)');
-        }
-    }
     // 8. Write config.json
     const projectName = getProjectName();
     const configData = {
-        schemaVersion: '1.0',
+        schemaVersion: '2.0',
         mode,
         aiTools: selectedTools,
         project: projectName,
+        security: {
+            skillScanPaths: defaultSkillScanPaths(),
+        },
     };
     if (aiModel)
         configData.aiModel = aiModel;
@@ -228,77 +133,15 @@ export async function init() {
     ensureGuide(projectRoot);
     syncGuideReference(projectRoot, selectedTools);
     console.log(green('  ✓ Built') + ` core artifacts for ${built.tools.join(', ')}`);
-    if (mode === 'full') {
-        const optionalCopied = copyOptionalCommands(projectRoot, selectedTools, selectedOptional);
-        if (optionalCopied > 0) {
-            console.log(green('  ✓ Copied') + ` ${optionalCopied} optional command files`);
-        }
-        for (const cmd of QUICK_COMMANDS) {
-            console.log(dim(`    - /${cmd.name}`));
-        }
-        if (selectedOptional.length > 0) {
-            console.log(dim(`  Optional:`));
-            for (const cmd of selectedOptional) {
-                console.log(dim(`    - /${cmd.name}`));
-            }
-        }
-        const primaryTool = selectedTools.includes('claude-code') ? 'claude-code' : 'cursor';
-        if (primaryTool === 'claude-code' || primaryTool === 'cursor') {
-            syncIronRules(projectRoot, primaryTool);
-        }
-    }
     // Done
-    if (mode === 'collect') {
-        console.log(`
+    console.log(`
   ${green('✓ Done!')} Data collection is ready.
 
     MCP Server will auto-start when your AI tool loads.
-    AI will silently collect data during development.
-
-    View data anytime: ${cyan('aida dashboard')}
-`);
-        printManualUntrackNotice();
-    }
-    else {
-        console.log(`
-  ${green('✓ Done!')} Next steps:
+    AI will use rules, memories, and summary as the 2.0 truth sources.
 
-    1. Run ${cyan('/audit')} to generate project-specific rules
-    2. Start coding — AI will auto-collect data via MCP
-    3. Run ${cyan('/workflow')} for the full AI development loop
-    4. View data: ${cyan('aida dashboard')}
+    Refresh generated artifacts anytime: ${cyan('aida sync')}
 `);
-        printManualUntrackNotice();
-    }
-}
-function syncIronRules(projectRoot, tool) {
-    const marker = '## AIDevOS Iron Rules';
-    if (tool === 'claude-code') {
-        const file = resolve(projectRoot, 'CLAUDE.md');
-        if (fileExists(file)) {
-            const content = readText(file);
-            if (content.includes(marker))
-                return;
-            writeText(file, content + IRON_RULES_APPEND);
-        }
-        else {
-            writeText(file, IRON_RULES_APPEND.trim() + '\n');
-        }
-    }
-    else {
-        // Cursor: write to .cursor/rules/aida/iron-rules.md
-        const rulesDir = resolve(projectRoot, '.cursor', 'rules', 'aida');
-        ensureDir(rulesDir);
-        const file = resolve(rulesDir, 'iron-rules.md');
-        if (fileExists(file)) {
-            const content = readText(file);
-            if (content.includes(marker))
-                return;
-            writeText(file, content + IRON_RULES_APPEND);
-        }
-        else {
-            writeText(file, IRON_RULES_APPEND.trim() + '\n');
-        }
-    }
+    printManualUntrackNotice();
 }
 //# sourceMappingURL=init.js.map

package/dist/cli/commands/init.js.map

@@ -1 +1 @@
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package/dist/cli/commands/memory.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"memory.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/memory.ts"],"names":[],"mappings":"AAgDA,wBAAsB,MAAM,IAAI,OAAO,CAAC,IAAI,CAAC,CAsJ5C"}
+{"version":3,"file":"memory.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/memory.ts"],"names":[],"mappings":"AA+CA,wBAAsB,MAAM,IAAI,OAAO,CAAC,IAAI,CAAC,CA6I5C"}

package/dist/cli/commands/memory.js

@@ -1,6 +1,6 @@
 import { cyan, green, red, yellow } from '../../utils/display.js';
 import { getBranchName } from '../../utils/git.js';
-import { buildMemoryViews, loadModuleMemory, loadRunContext, loadRunMemoryPack, migrateLegacyMemories, rebuildCurrentBranchMemory, searchModuleMemories, updateRunContext, upsertModuleMemory } from '../../utils/memory.js';
+import { buildMemoryViews, loadModuleMemory, loadRunContext, loadRunMemoryPack, rebuildCurrentBranchMemory, searchModuleMemories, updateRunContext, upsertModuleMemory } from '../../utils/memory.js';
 import { fileExists, readText } from '../../utils/fs.js';
 import { moduleMemoryViewPath, runContextViewPath, runMemoryPackViewPath } from '../../utils/paths.js';
 function commandArg(index) {
@@ -33,13 +33,12 @@ function parseFlags(args) {
 }
 function printUsage() {
     console.log(`
-  aida memory rebuild [branch]           Rebuild current branch context + module memories from run/requirement data
-  aida memory migrate-legacy             Migrate contexts/memories from existing .aida/.aidevos run data
+  aida memory rebuild [branch]           Rebuild current branch context + module memories from branch data
   aida memory build                      Render markdown views from memory JSON source
   aida memory search <query>             Search module memory index
   aida memory show <moduleKey>           Show a module memory markdown view
   aida memory context [branch]           Show branch context markdown view
-  aida memory pack [branch]              Show aggregated runtime memory pack
+  aida memory pack [branch]              Show aggregated branch memory pack
   aida memory upsert <moduleKey> [--title ... --summary ... --keywords a,b]
   aida memory context-update [branch] [--summary ... --phase ... --modules a,b]
 `);
@@ -60,15 +59,6 @@ export async function memory() {
             console.log(`    Modules: ${result.modules.length}`);
             return;
         }
-        case 'migrate-legacy': {
-            const result = migrateLegacyMemories(projectRoot);
-            console.log(green('\n  ✓ Migrated legacy memory data'));
-            console.log(`    Branches: ${result.branches}`);
-            console.log(`    Contexts: ${result.contextsWritten}`);
-            console.log(`    Module memories: ${result.moduleMemoriesWritten}`);
-            console.log(`    Modules touched: ${result.modulesTouched.join(', ') || '-'}`);
-            return;
-        }
         case 'build': {
             const result = buildMemoryViews(projectRoot);
             console.log(green('\n  ✓ Built memory views'));

package/dist/cli/commands/memory.js.map

@@ -1 +1 @@
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package/dist/cli/commands/rules.d.ts

@@ -1,12 +1,2 @@
-export declare function mergeRuleRegistryFile(filePath: string): Promise<{
-    status: 'merged' | 'no-conflict' | 'missing' | 'error';
-    added?: number;
-    total?: number;
-}>;
-export declare function mergeRulesRegistry(projectRoot: string): Promise<{
-    status: 'merged' | 'no-conflict' | 'missing' | 'error';
-    added?: number;
-    total?: number;
-}>;
 export declare function rules(): Promise<void>;
 //# sourceMappingURL=rules.d.ts.map

package/dist/cli/commands/rules.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"rules.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/rules.ts"],"names":[],"mappings":"AA+GA,wBAAsB,qBAAqB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC;IAAE,MAAM,EAAE,QAAQ,GAAG,aAAa,GAAG,SAAS,GAAG,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CA0BjK;AAED,wBAAsB,kBAAkB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC;IAAE,MAAM,EAAE,QAAQ,GAAG,aAAa,GAAG,SAAS,GAAG,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAEjK;AA6ID,wBAAsB,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC,CA0C3C"}
+{"version":3,"file":"rules.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/rules.ts"],"names":[],"mappings":"AA0PA,wBAAsB,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC,CA0C3C"}

package/dist/cli/commands/rules.js

@@ -1,10 +1,10 @@
 import { configPath } from '../../utils/paths.js';
-import { fileExists, readText, extractConflictSections, parseConflictJsonArray, writeText } from '../../utils/fs.js';
+import { fileExists, readText } from '../../utils/fs.js';
 import { green, red, cyan, yellow, dim } from '../../utils/display.js';
-import { addRule, bootstrapRuleRegistry, dedupeExactRules, loadRegistry, saveRegistry, findSimilarRules, mergeRegistries, registryPath, } from '../../utils/rules.js';
+import { addRule, bootstrapRuleRegistry, dedupeExactRules, loadRegistry, saveRegistry, findSimilarRules, registryPath, mergeRuleRegistry, } from '../../utils/rules.js';
 import { buildProjectArtifacts } from '../../utils/ai-build.js';
 import { updateGuide, updateGuideReferences } from '../../utils/guide.js';
-import { RULE_CATEGORIES } from '../../schemas/run-json.js';
+import { RULE_CATEGORIES } from '../../schemas/rules.js';
 function subcommand() {
     return process.argv[3] || '';
 }
@@ -56,7 +56,7 @@ async function rulesDedupe() {
     const { entries, removed } = dedupeExactRules(existing);
     if (removed.length > 0) {
         saveRegistry(projectRoot, entries);
-        buildProjectArtifacts(projectRoot);
+        buildProjectArtifacts(projectRoot, [], { skipMcpConfig: true });
         console.log(green(`\n  ✓ Removed ${removed.length} exact duplicate(s):\n`));
         for (const entry of removed) {
             console.log(`  - ${cyan(entry.id)} ${entry.content.substring(0, 80)}`);
@@ -81,32 +81,7 @@ async function rulesDedupe() {
         console.log('');
     }
     console.log(dim('  To resolve: manually edit .aida/rules.json,') +
-        dim(' then run `aida rules build`.\n'));
-}
-export async function mergeRuleRegistryFile(filePath) {
-    if (!fileExists(filePath)) {
-        return { status: 'missing' };
-    }
-    const raw = readText(filePath);
-    if (!raw.includes('<<<<<<<') && !raw.includes('>>>>>>>')) {
-        return { status: 'no-conflict' };
-    }
-    const sections = extractConflictSections(raw);
-    if (!sections) {
-        return { status: 'error' };
-    }
-    const ours = parseConflictJsonArray(sections.ours);
-    const theirs = parseConflictJsonArray(sections.theirs);
-    if (ours.length === 0 && theirs.length === 0) {
-        return { status: 'error' };
-    }
-    const { merged, added } = mergeRegistries(ours, theirs);
-    const sorted = merged.sort((a, b) => a.id.localeCompare(b.id));
-    writeText(filePath, `${JSON.stringify(sorted, null, 2)}\n`);
-    return { status: 'merged', added, total: sorted.length };
-}
-export async function mergeRulesRegistry(projectRoot) {
-    return mergeRuleRegistryFile(registryPath(projectRoot));
+        dim(' then run `aida sync`.\n'));
 }
 async function rulesMerge() {
     const projectRoot = process.cwd();
@@ -121,13 +96,13 @@ async function rulesMerge() {
         return;
     }
     console.log(yellow('\n  Merge conflict detected in rules.json. Resolving...\n'));
-    const result = await mergeRulesRegistry(projectRoot);
+    const result = mergeRuleRegistry(projectRoot);
     if (result.status === 'error') {
         console.log(red('  Could not parse conflict markers. Please resolve manually.\n'));
         return;
     }
     if (result.status === 'merged') {
-        buildProjectArtifacts(projectRoot);
+        buildProjectArtifacts(projectRoot, [], { skipMcpConfig: true });
         updateGuideReferences(projectRoot);
         console.log(green('  ✓ Merged successfully') +
             `: ${result.total} total rules (${result.added} new from incoming branch)\n`);
@@ -222,7 +197,7 @@ async function rulesDelete() {
     saveRegistry(projectRoot, current);
     buildProjectArtifacts(projectRoot);
     console.log(green(`\n  ✓ Rule deprecated`) + `: ${ruleId}`);
-    console.log(dim('  Re-run `aida rules list` to verify status, or `aida build` to rebuild all targets.\n'));
+    console.log(dim('  Re-run `aida rules list` to verify status, or `aida sync` to rebuild all targets.\n'));
 }
 export async function rules() {
     const projectRoot = process.cwd();
@@ -260,7 +235,7 @@ export async function rules() {
     list      List all rules grouped by category (--json supported)
 
   The source of truth is .aida/rules.json (committed to git).
-  aida build distributes generated rule files into each configured AI tool directory.
+  aida sync distributes generated rule files into each configured AI tool directory.
 `);
     }
 }