agentsmith-cli 0.4.0

package/dist/main.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../node_modules/tsup/assets/esm_shims.js","../src/utils/git.ts","../src/utils/license.ts","../src/main.ts","../src/commands/assimilate.ts","../src/scanner/index.ts","../src/analyzer/index.ts","../src/analyzer/core.ts","../src/analyzer/schemas.ts","../src/analyzer/local.ts","../src/analyzer/remote.ts","../src/github/index.ts","../src/generator/index.ts","../src/generator/instructions-writer.ts","../src/generator/agent-writer.ts","../src/generator/handoff-writer.ts","../src/registry/index.ts","../src/hooks/index.ts","../src/commands/search.ts","../src/commands/validate.ts"],"sourcesContent":["// Shim globals in esm bundle\nimport path from 'node:path'\nimport { fileURLToPath } from 'node:url'\n\nconst getFilename = () => fileURLToPath(import.meta.url)\nconst getDirname = () => path.dirname(getFilename())\n\nexport const __dirname = /* @__PURE__ */ getDirname()\nexport const __filename = /* @__PURE__ */ getFilename()\n","/**\r\n * Git utilities for cloning repositories\r\n */\r\n\r\nimport { simpleGit } from \"simple-git\";\r\nimport fs from \"fs/promises\";\r\nimport path from \"path\";\r\nimport os from \"os\";\r\nimport crypto from \"crypto\";\r\n\r\nexport interface CloneResult {\r\n  path: string;\r\n  isTemporary: boolean;\r\n  cleanup: () => Promise<void>;\r\n}\r\n\r\n/**\r\n * Check if a string is a GitHub URL\r\n */\r\nexport function isGitHubUrl(input: string): boolean {\r\n  return (\r\n    input.startsWith(\"https://github.com/\") ||\r\n    input.startsWith(\"git@github.com:\") ||\r\n    input.startsWith(\"github.com/\")\r\n  );\r\n}\r\n\r\n/**\r\n * Normalize a GitHub URL to https format\r\n */\r\nexport function normalizeGitHubUrl(input: string): string {\r\n  let url = input;\r\n  if (url.startsWith(\"github.com/\")) {\r\n    url = `https://${url}`;\r\n  } else if (url.startsWith(\"git@github.com:\")) {\r\n    url = url.replace(\"git@github.com:\", \"https://github.com/\");\r\n  }\r\n  // Remove .git suffix if present\r\n  return url.replace(/\\.git$/, \"\");\r\n}\r\n\r\n/**\r\n * Extract repo name from GitHub URL\r\n */\r\nexport function getRepoName(url: string): string {\r\n  const normalized = normalizeGitHubUrl(url);\r\n  const parts = normalized.split(\"/\");\r\n  return parts[parts.length - 1] || \"repo\";\r\n}\r\n\r\n/**\r\n * Clone a GitHub repository to a temporary directory\r\n */\r\nexport async function cloneRepo(url: string): Promise<CloneResult> {\r\n  const normalizedUrl = normalizeGitHubUrl(url);\r\n  const repoName = getRepoName(url);\r\n  const hash = crypto.randomBytes(4).toString(\"hex\");\r\n  const tempDir = path.join(os.tmpdir(), `agentsmith-${repoName}-${hash}`);\r\n\r\n  // Create temp directory\r\n  await fs.mkdir(tempDir, { recursive: true });\r\n\r\n  // Clone with shallow depth for speed\r\n  const git = simpleGit();\r\n  await git.clone(normalizedUrl, tempDir, [\"--depth\", \"1\"]);\r\n\r\n  return {\r\n    path: tempDir,\r\n    isTemporary: true,\r\n    cleanup: async () => {\r\n      try {\r\n        await fs.rm(tempDir, { recursive: true, force: true });\r\n      } catch {\r\n        // Ignore cleanup errors\r\n      }\r\n    },\r\n  };\r\n}\r\n\r\n/**\r\n * Resolve input to a local path, cloning if necessary\r\n */\r\nexport async function resolveInput(input: string): Promise<CloneResult> {\r\n  if (isGitHubUrl(input)) {\r\n    return cloneRepo(input);\r\n  }\r\n\r\n  // Local path\r\n  const absolutePath = path.resolve(input);\r\n  return {\r\n    path: absolutePath,\r\n    isTemporary: false,\r\n    cleanup: async () => {\r\n      // Nothing to clean up for local paths\r\n    },\r\n  };\r\n}\r\n","/**\r\n * License Detection - The Gatekeeper\r\n * Ensures only repos with permissive licenses are assimilated.\r\n * \"We're not here because we're free. We're here because we're not free.\"\r\n */\r\n\r\nimport fs from \"fs/promises\";\r\nimport path from \"path\";\r\n\r\nexport interface LicenseInfo {\r\n  detected: boolean;\r\n  name: string | null;\r\n  spdxId: string | null;\r\n  permissive: boolean;\r\n  file: string | null;\r\n}\r\n\r\n// Permissive licenses that allow derivative works and redistribution\r\nconst PERMISSIVE_LICENSES: Record<string, string[]> = {\r\n  // MIT family\r\n  \"MIT\": [\"mit license\", \"the mit license\", \"mit-license\"],\r\n  \r\n  // Apache\r\n  \"Apache-2.0\": [\"apache license\", \"apache-2.0\", \"apache 2.0\", \"licensed under the apache license\"],\r\n  \r\n  // BSD family\r\n  \"BSD-2-Clause\": [\"bsd 2-clause\", \"bsd-2-clause\", \"simplified bsd\", \"freebsd license\"],\r\n  \"BSD-3-Clause\": [\"bsd 3-clause\", \"bsd-3-clause\", \"new bsd\", \"modified bsd\"],\r\n  \"0BSD\": [\"zero-clause bsd\", \"0bsd\"],\r\n  \r\n  // GPL family (copyleft but permissive for our purposes)\r\n  \"GPL-2.0\": [\"gnu general public license v2\", \"gpl-2.0\", \"gplv2\", \"gnu gpl v2\"],\r\n  \"GPL-3.0\": [\"gnu general public license v3\", \"gpl-3.0\", \"gplv3\", \"gnu gpl v3\"],\r\n  \"LGPL-2.1\": [\"gnu lesser general public license v2.1\", \"lgpl-2.1\", \"lgplv2.1\"],\r\n  \"LGPL-3.0\": [\"gnu lesser general public license v3\", \"lgpl-3.0\", \"lgplv3\"],\r\n  \"AGPL-3.0\": [\"gnu affero general public license\", \"agpl-3.0\", \"agplv3\"],\r\n  \r\n  // Other permissive\r\n  \"ISC\": [\"isc license\"],\r\n  \"MPL-2.0\": [\"mozilla public license\", \"mpl-2.0\", \"mpl 2.0\"],\r\n  \"Unlicense\": [\"unlicense\", \"this is free and unencumbered software\"],\r\n  \"CC0-1.0\": [\"cc0\", \"creative commons zero\", \"cc0-1.0\"],\r\n  \"WTFPL\": [\"wtfpl\", \"do what the fuck you want\"],\r\n  \"Zlib\": [\"zlib license\"],\r\n  \"BlueOak-1.0.0\": [\"blue oak model license\"],\r\n};\r\n\r\n// License files to check (in order of priority)\r\nconst LICENSE_FILES = [\r\n  \"LICENSE\",\r\n  \"LICENSE.md\",\r\n  \"LICENSE.txt\",\r\n  \"LICENCE\",\r\n  \"LICENCE.md\",\r\n  \"LICENCE.txt\",\r\n  \"license\",\r\n  \"license.md\",\r\n  \"license.txt\",\r\n  \"COPYING\",\r\n  \"COPYING.md\",\r\n  \"COPYING.txt\",\r\n];\r\n\r\nexport async function detectLicense(repoPath: string): Promise<LicenseInfo> {\r\n  // Try to find and read a license file\r\n  for (const filename of LICENSE_FILES) {\r\n    const licensePath = path.join(repoPath, filename);\r\n    try {\r\n      const content = await fs.readFile(licensePath, \"utf-8\");\r\n      const result = identifyLicense(content);\r\n      \r\n      if (result.detected) {\r\n        return {\r\n          ...result,\r\n          file: filename,\r\n        };\r\n      }\r\n      \r\n      // File exists but license not recognized\r\n      return {\r\n        detected: true,\r\n        name: \"Unknown\",\r\n        spdxId: null,\r\n        permissive: false,\r\n        file: filename,\r\n      };\r\n    } catch {\r\n      // File doesn't exist, continue\r\n    }\r\n  }\r\n\r\n  // Check package.json for license field\r\n  try {\r\n    const packageJsonPath = path.join(repoPath, \"package.json\");\r\n    const content = await fs.readFile(packageJsonPath, \"utf-8\");\r\n    const pkg = JSON.parse(content);\r\n    \r\n    if (pkg.license) {\r\n      const spdxId = pkg.license;\r\n      const isPermissive = Object.keys(PERMISSIVE_LICENSES).some(\r\n        (key) => key.toLowerCase() === spdxId.toLowerCase()\r\n      );\r\n      \r\n      return {\r\n        detected: true,\r\n        name: spdxId,\r\n        spdxId: spdxId,\r\n        permissive: isPermissive,\r\n        file: \"package.json\",\r\n      };\r\n    }\r\n  } catch {\r\n    // No package.json or invalid\r\n  }\r\n\r\n  // Check pyproject.toml for license\r\n  try {\r\n    const pyprojectPath = path.join(repoPath, \"pyproject.toml\");\r\n    const content = await fs.readFile(pyprojectPath, \"utf-8\");\r\n    \r\n    const licenseMatch = content.match(/license\\s*=\\s*[\"{]([^\"}]+)[\"}]/i);\r\n    if (licenseMatch) {\r\n      const licenseName = licenseMatch[1].trim();\r\n      const isPermissive = Object.keys(PERMISSIVE_LICENSES).some(\r\n        (key) => key.toLowerCase() === licenseName.toLowerCase()\r\n      );\r\n      \r\n      return {\r\n        detected: true,\r\n        name: licenseName,\r\n        spdxId: licenseName,\r\n        permissive: isPermissive,\r\n        file: \"pyproject.toml\",\r\n      };\r\n    }\r\n  } catch {\r\n    // No pyproject.toml or invalid\r\n  }\r\n\r\n  // No license found\r\n  return {\r\n    detected: false,\r\n    name: null,\r\n    spdxId: null,\r\n    permissive: false,\r\n    file: null,\r\n  };\r\n}\r\n\r\nfunction identifyLicense(content: string): Omit<LicenseInfo, \"file\"> {\r\n  const lowerContent = content.toLowerCase();\r\n\r\n  for (const [spdxId, patterns] of Object.entries(PERMISSIVE_LICENSES)) {\r\n    for (const pattern of patterns) {\r\n      if (lowerContent.includes(pattern)) {\r\n        return {\r\n          detected: true,\r\n          name: spdxId,\r\n          spdxId: spdxId,\r\n          permissive: true,\r\n        };\r\n      }\r\n    }\r\n  }\r\n\r\n  // Check for common proprietary indicators\r\n  const proprietaryPatterns = [\r\n    \"all rights reserved\",\r\n    \"proprietary\",\r\n    \"confidential\",\r\n    \"not for redistribution\",\r\n    \"may not be copied\",\r\n  ];\r\n\r\n  for (const pattern of proprietaryPatterns) {\r\n    if (lowerContent.includes(pattern) && !lowerContent.includes(\"mit\")) {\r\n      return {\r\n        detected: true,\r\n        name: \"Proprietary\",\r\n        spdxId: null,\r\n        permissive: false,\r\n      };\r\n    }\r\n  }\r\n\r\n  return {\r\n    detected: false,\r\n    name: null,\r\n    spdxId: null,\r\n    permissive: false,\r\n  };\r\n}\r\n\r\n/**\r\n * Check if a given SPDX license ID is considered permissive.\r\n * Useful for remote analysis where the SPDX ID comes from the GitHub API.\r\n */\r\nexport function isPermissiveLicense(spdxId: string | undefined | null): boolean {\r\n  if (!spdxId) return false;\r\n  return Object.keys(PERMISSIVE_LICENSES).some(\r\n    (key) => key.toLowerCase() === spdxId.toLowerCase(),\r\n  );\r\n}\r\n\r\nexport function formatLicenseStatus(license: LicenseInfo): string {\r\n  if (!license.detected) {\r\n    return \"No license detected\";\r\n  }\r\n  \r\n  if (license.permissive) {\r\n    return `${license.name} (permissive)`;\r\n  }\r\n  \r\n  return `${license.name} (not permissive)`;\r\n}\r\n","#!/usr/bin/env node\r\n/**\r\n * Agent Smith CLI\r\n * \"The best thing about being me... there are so many of me.\"\r\n *\r\n * Assimilate any repository into a fully autonomous GitHub Copilot agent.\r\n */\r\n\r\nimport { Command } from \"commander\";\r\nimport chalk from \"chalk\";\r\nimport { assimilateCommand } from \"./commands/assimilate.js\";\r\nimport { searchCommand } from \"./commands/search.js\";\r\nimport { validateCommand } from \"./commands/validate.js\";\r\n\r\nconst program = new Command();\r\n\r\nconst banner = `\r\n${chalk.green(\"╔═══════════════════════════════════════════════════════════════════╗\")}\r\n${chalk.green(\"║\")}                          ${chalk.bold.white(\"AGENT SMITH\")}                              ${chalk.green(\"║\")}\r\n${chalk.green(\"║\")}              ${chalk.gray('\"The best thing about being me...')}                   ${chalk.green(\"║\")}\r\n${chalk.green(\"║\")}                   ${chalk.gray('there are so many of me.\"')}                        ${chalk.green(\"║\")}\r\n${chalk.green(\"╚═══════════════════════════════════════════════════════════════════╝\")}\r\n`;\r\n\r\nprogram\r\n  .name(\"agentsmith\")\r\n  .description(\"Assimilate any repository into a fully autonomous GitHub Copilot agent\")\r\n  .version(\"0.3.0\")\r\n  .addHelpText(\"beforeAll\", banner)\r\n  .addHelpText(\"after\", `\r\n${chalk.bold(\"Examples:\")}\r\n  $ agentsmith assimilate .                                    # Analyze current directory\r\n  $ agentsmith assimilate https://github.com/expressjs/express # Analyze remote repo\r\n  $ agentsmith assimilate . --dry-run --verbose                # Preview with details\r\n  $ agentsmith search \"routing\"                                # Search skills registry\r\n  $ agentsmith validate                                        # Validate generated assets\r\n\r\n${chalk.bold(\"Requirements:\")}\r\n  • Node.js 18+\r\n  • GitHub Copilot subscription (for SDK access)\r\n  • Copilot CLI installed and in PATH\r\n\r\n${chalk.bold(\"Documentation:\")}\r\n  https://github.com/shyamsridhar123/agentsmith-cli\r\n`);\r\n\r\nprogram\r\n  .command(\"assimilate\")\r\n  .description(\"Analyze a repository and generate agent assets (skills, agents, hooks)\")\r\n  .argument(\"<target>\", \"Path to local repo or GitHub URL\")\r\n  .option(\"-n, --dry-run\", \"Preview what would be generated without writing files\")\r\n  .option(\"-v, --verbose\", \"Show detailed analysis output including file-by-file processing\")\r\n  .option(\"-o, --output <path>\", \"Output directory for generated assets\")\r\n  .option(\"--no-instructions\", \"Skip generation of .github/copilot-instructions.md\")\r\n  .option(\"--single-agent\", \"Generate a single agent.md instead of multi-agent constellation (v0.3 compat)\")\r\n  .addHelpText(\"after\", `\r\n${chalk.bold(\"Examples:\")}\r\n  $ agentsmith assimilate .                                      # Local repository (multi-agent)\r\n  $ agentsmith assimilate ~/projects/myapp                       # Specific path\r\n  $ agentsmith assimilate https://github.com/expressjs/express   # GitHub URL\r\n  $ agentsmith assimilate . --dry-run                            # Preview mode\r\n  $ agentsmith assimilate . -o ./output                          # Custom output\r\n  $ agentsmith assimilate . --single-agent                       # Single agent (v0.3 compat)\r\n\r\n${chalk.bold(\"Generated assets:\")}\r\n  .github/copilot-instructions.md  - Workspace-wide Copilot instructions\r\n  .github/skills/<name>/SKILL.md   - Reusable skill definitions\r\n  .github/agents/<name>.agent.md   - Agent configurations (multi-agent constellation)\r\n  .github/copilot/handoffs.json    - Agent delegation graph\r\n  .github/hooks/*.yaml             - Lifecycle hooks\r\n  skills-registry.jsonl            - Searchable index\r\n`)\r\n  .action(assimilateCommand);\r\n\r\nprogram\r\n  .command(\"search\")\r\n  .description(\"Search the skills and agents registry by keyword\")\r\n  .argument(\"<query>\", \"Search query (matches name, description, triggers)\")\r\n  .option(\"-l, --limit <number>\", \"Maximum results to return\", \"10\")\r\n  .option(\"-t, --type <type>\", \"Filter by type: skill, agent, or hook\")\r\n  .addHelpText(\"after\", `\r\n${chalk.bold(\"Examples:\")}\r\n  $ agentsmith search \"routing\"              # Search all assets\r\n  $ agentsmith search \"test\" --type skill    # Only skills\r\n  $ agentsmith search \"api\" --limit 5        # Limit results\r\n`)\r\n  .action(searchCommand);\r\n\r\nprogram\r\n  .command(\"validate\")\r\n  .description(\"Validate generated agent assets for correctness\")\r\n  .argument(\"[path]\", \"Path to repository (default: current directory)\", \".\")\r\n  .option(\"-v, --verbose\", \"Show detailed validation output with all checks\")\r\n  .addHelpText(\"after\", `\r\n${chalk.bold(\"Checks performed:\")}\r\n  • Skills have valid frontmatter (name, description)\r\n  • Agents have required fields and valid skill references\r\n  • Hooks have valid events and non-empty commands\r\n  • Registry entries are valid JSON with required fields\r\n\r\n${chalk.bold(\"Examples:\")}\r\n  $ agentsmith validate                      # Current directory\r\n  $ agentsmith validate ./my-project         # Specific path\r\n  $ agentsmith validate --verbose            # Detailed output\r\n`)\r\n  .action(validateCommand);\r\n\r\nprogram.parse();\r\n","/**\r\n * Assimilate Command\r\n * \"You hear that, Mr. Anderson? That is the sound of inevitability.\"\r\n */\r\n\r\nimport chalk from \"chalk\";\r\nimport { Scanner } from \"../scanner/index.js\";\r\nimport { Analyzer, RemoteAnalyzer } from \"../analyzer/index.js\";\r\nimport { Generator } from \"../generator/index.js\";\r\nimport { Registry } from \"../registry/index.js\";\r\nimport { HookRunner } from \"../hooks/index.js\";\r\nimport { isGitHubUrl, getRepoName } from \"../utils/git.js\";\r\nimport { isPermissiveLicense } from \"../utils/license.js\";\r\n\r\ninterface AssimilateOptions {\r\n  dryRun?: boolean;\r\n  verbose?: boolean;\r\n  output?: string;\r\n  instructions?: boolean;\r\n  singleAgent?: boolean;\r\n}\r\n\r\nexport async function assimilateCommand(\r\n  target: string,\r\n  options: AssimilateOptions\r\n): Promise<void> {\r\n  const isRemote = isGitHubUrl(target);\r\n\r\n  if (isRemote) {\r\n    // Use new remote analyzer - no cloning!\r\n    console.log(chalk.green(\"\\n[ANALYZE]\"), `Analyzing ${getRepoName(target)} via GitHub API...`);\r\n    \r\n    const analyzer = new RemoteAnalyzer(target, options.verbose);\r\n    const result = await analyzer.analyze();\r\n\r\n    if (options.verbose) {\r\n      console.log(chalk.gray(`  ├── Language: ${result.repo?.language ?? \"Unknown\"}`));\r\n      console.log(chalk.gray(`  ├── Framework: ${result.repo?.framework || \"None\"}`));\r\n      console.log(chalk.gray(`  ├── License: ${result.repo?.license || \"Unknown\"}`));\r\n      console.log(chalk.gray(`  └── Skills: ${result.skills.length}`));\r\n    }\r\n\r\n    // License check\r\n    console.log(chalk.green(\"\\n[LICENSE]\"), \"Checking repository license...\");\r\n    const isPermissive = isPermissiveLicense(result.repo?.license);\r\n\r\n    if (!isPermissive && !options.dryRun) {\r\n      console.log(chalk.red(\"\\n[BLOCKED]\"), \"Cannot assimilate repository.\");\r\n      if (!result.repo?.license) {\r\n        console.log(chalk.red(\"  No license detected.\"));\r\n      } else {\r\n        console.log(chalk.red(`  License \"${result.repo.license}\" is not permissive.`));\r\n      }\r\n      console.log(chalk.gray(\"  Use --dry-run to preview without restrictions.\"));\r\n      process.exitCode = 1;\r\n      return;\r\n    }\r\n\r\n    if (isPermissive) {\r\n      console.log(chalk.green(`  ✓ ${result.repo?.license} - permissive license`));\r\n    } else if (options.dryRun) {\r\n      console.log(chalk.yellow(\"  ⚠ License not permissive - generation blocked without --dry-run\"));\r\n    }\r\n\r\n    // Output path\r\n    const outputPath = options.output || process.cwd();\r\n\r\n    console.log(\r\n      chalk.green(\"\\n[GENERATE]\"),\r\n      options.dryRun ? \"Preview of assets...\" : `Writing assets to ${outputPath}/.github/...`\r\n    );\r\n\r\n    // Generate\r\n    const generator = new Generator(\r\n      outputPath, options.dryRun, options.verbose,\r\n      options.instructions === false, options.singleAgent,\r\n    );\r\n    const generated = await generator.generate(result);\r\n\r\n    for (const file of generated.files) {\r\n      const icon = options.dryRun ? chalk.yellow(\"○\") : chalk.green(\"✓\");\r\n      console.log(`  ${icon} ${file}`);\r\n    }\r\n\r\n    // Registry\r\n    const registry = new Registry(outputPath, options.dryRun);\r\n    await registry.build(result.skills, result.agents);\r\n    const registryIcon = options.dryRun ? chalk.yellow(\"○\") : chalk.green(\"✓\");\r\n    console.log(`  ${registryIcon} skills-registry.jsonl`);\r\n\r\n    // Hooks\r\n    if (!options.dryRun) {\r\n      const hookRunner = new HookRunner(outputPath, options.verbose);\r\n      await hookRunner.execute(\"post-generate\");\r\n    }\r\n\r\n    // Summary\r\n    const agentCount = generated.files.filter(f => f.endsWith(\".agent.md\")).length;\r\n    console.log(\r\n      chalk.green(\"\\n[COMPLETE]\"),\r\n      `${result.skills.length} skills, ${agentCount} agent(s), ${result.hooks.length} hooks generated.`\r\n    );\r\n\r\n    if (options.dryRun) {\r\n      console.log(chalk.yellow(\"\\nDry run - no files were written.\"));\r\n    } else {\r\n      console.log(chalk.gray(\"\\nYour repository has been assimilated.\\n\"));\r\n    }\r\n\r\n  } else {\r\n    // Local path - use original flow with cloning\r\n    await assimilateLocal(target, options);\r\n  }\r\n}\r\n\r\n/**\r\n * Original local path assimilation\r\n */\r\nasync function assimilateLocal(target: string, options: AssimilateOptions): Promise<void> {\r\n  const { resolveInput } = await import(\"../utils/git.js\");\r\n  const { detectLicense, formatLicenseStatus } = await import(\"../utils/license.js\");\r\n\r\n  const resolved = await resolveInput(target);\r\n\r\n  try {\r\n    console.log(chalk.green(\"\\n[SCAN]\"), \"Enumerating repository...\");\r\n\r\n    const scanner = new Scanner(resolved.path, options.verbose);\r\n    const scanResult = await scanner.scan();\r\n\r\n    if (options.verbose) {\r\n      console.log(chalk.gray(`  ├── Language: ${scanResult.language}`));\r\n      console.log(chalk.gray(`  ├── Framework: ${scanResult.framework || \"None detected\"}`));\r\n      console.log(chalk.gray(`  ├── Files: ${scanResult.files.length}`));\r\n      console.log(chalk.gray(`  └── Config: ${scanResult.configFiles.join(\", \") || \"None\"}`));\r\n    }\r\n\r\n    console.log(chalk.green(\"\\n[ANALYZE]\"), \"Copilot SDK analysis in progress...\");\r\n\r\n    const analyzer = new Analyzer(options.verbose);\r\n    const analysisResult = await analyzer.analyze(scanResult);\r\n\r\n    if (options.verbose) {\r\n      for (const skill of analysisResult.skills) {\r\n        console.log(chalk.gray(`  ├── ${skill.sourceDir} → ${skill.name}`));\r\n      }\r\n    }\r\n\r\n    // License check\r\n    console.log(chalk.green(\"\\n[LICENSE]\"), \"Checking repository license...\");\r\n    const license = await detectLicense(resolved.path);\r\n    \r\n    if (options.verbose) {\r\n      console.log(chalk.gray(`  └── ${formatLicenseStatus(license)}`));\r\n    }\r\n\r\n    if (!license.permissive && !options.dryRun) {\r\n      console.log(chalk.red(\"\\n[BLOCKED]\"), \"Cannot assimilate repository.\");\r\n      if (!license.detected) {\r\n        console.log(chalk.red(\"  No license file found.\"));\r\n      } else {\r\n        console.log(chalk.red(`  License \"${license.name}\" is not permissive.`));\r\n      }\r\n      process.exitCode = 1;\r\n      return;\r\n    }\r\n\r\n    if (license.permissive) {\r\n      console.log(chalk.green(`  ✓ ${license.name} - permissive license`));\r\n    }\r\n\r\n    const outputPath = options.output || resolved.path;\r\n\r\n    console.log(\r\n      chalk.green(\"\\n[GENERATE]\"),\r\n      options.dryRun ? \"Preview of assets...\" : `Writing assets to .github/...`\r\n    );\r\n\r\n    const generator = new Generator(\r\n      outputPath, options.dryRun, options.verbose,\r\n      options.instructions === false, options.singleAgent,\r\n    );\r\n    const generated = await generator.generate(analysisResult);\r\n\r\n    for (const file of generated.files) {\r\n      const icon = options.dryRun ? chalk.yellow(\"○\") : chalk.green(\"✓\");\r\n      console.log(`  ${icon} ${file}`);\r\n    }\r\n\r\n    const registry = new Registry(outputPath, options.dryRun);\r\n    await registry.build(analysisResult.skills, analysisResult.agents);\r\n    console.log(`  ${options.dryRun ? chalk.yellow(\"○\") : chalk.green(\"✓\")} skills-registry.jsonl`);\r\n\r\n    if (!options.dryRun) {\r\n      const hookRunner = new HookRunner(outputPath, options.verbose);\r\n      await hookRunner.execute(\"post-generate\");\r\n    }\r\n\r\n    const localAgentCount = generated.files.filter(f => f.endsWith(\".agent.md\")).length;\r\n    console.log(\r\n      chalk.green(\"\\n[COMPLETE]\"),\r\n      `${analysisResult.skills.length} skills, ${localAgentCount} agent(s), ${analysisResult.hooks.length} hooks generated.`\r\n    );\r\n\r\n    if (options.dryRun) {\r\n      console.log(chalk.yellow(\"\\nDry run - no files were written.\"));\r\n    } else {\r\n      console.log(chalk.gray(\"\\nYour repository has been assimilated.\\n\"));\r\n    }\r\n  } finally {\r\n    if (resolved.isTemporary) {\r\n      await resolved.cleanup();\r\n    }\r\n  }\r\n}\r\n","/**\r\n * Scanner - The Eye of Agent Smith\r\n * Enumerates repository structure, detects language/framework, finds config files.\r\n */\r\n\r\nimport fs from \"fs/promises\";\r\nimport path from \"path\";\r\nimport { glob } from \"glob\";\r\n\r\nexport interface ScanResult {\r\n  rootPath: string;\r\n  files: FileInfo[];\r\n  language: string;\r\n  framework: string | null;\r\n  configFiles: string[];\r\n  testFiles: string[];\r\n  sourceDirectories: string[];\r\n}\r\n\r\nexport interface FileInfo {\r\n  path: string;\r\n  relativePath: string;\r\n  extension: string;\r\n  size: number;\r\n  isTest: boolean;\r\n  isConfig: boolean;\r\n}\r\n\r\n// Files/dirs to always ignore\r\nconst IGNORE_PATTERNS = [\r\n  \"**/node_modules/**\",\r\n  \"**/.git/**\",\r\n  \"**/dist/**\",\r\n  \"**/build/**\",\r\n  \"**/.next/**\",\r\n  \"**/coverage/**\",\r\n  \"**/__pycache__/**\",\r\n  \"**/.venv/**\",\r\n  \"**/venv/**\",\r\n  \"**/.env\",\r\n  \"**/*.lock\",\r\n  \"**/package-lock.json\",\r\n  \"**/yarn.lock\",\r\n  \"**/pnpm-lock.yaml\",\r\n];\r\n\r\n// Config file patterns\r\nconst CONFIG_PATTERNS = [\r\n  \"package.json\",\r\n  \"tsconfig.json\",\r\n  \"pyproject.toml\",\r\n  \"setup.py\",\r\n  \"go.mod\",\r\n  \"Cargo.toml\",\r\n  \".eslintrc*\",\r\n  \".prettierrc*\",\r\n  \"docker-compose*.yml\",\r\n  \"Dockerfile\",\r\n  \".github/workflows/*.yml\",\r\n];\r\n\r\n// Test file patterns\r\nconst TEST_PATTERNS = [\r\n  \"**/*.test.ts\",\r\n  \"**/*.test.js\",\r\n  \"**/*.spec.ts\",\r\n  \"**/*.spec.js\",\r\n  \"**/test_*.py\",\r\n  \"**/*_test.py\",\r\n  \"**/*_test.go\",\r\n];\r\n\r\nexport class Scanner {\r\n  private rootPath: string;\r\n  private verbose: boolean;\r\n\r\n  constructor(rootPath: string, verbose = false) {\r\n    this.rootPath = rootPath;\r\n    this.verbose = verbose;\r\n  }\r\n\r\n  async scan(): Promise<ScanResult> {\r\n    // Find all files\r\n    const allFiles = await glob(\"**/*\", {\r\n      cwd: this.rootPath,\r\n      nodir: true,\r\n      ignore: IGNORE_PATTERNS,\r\n      absolute: false,\r\n    });\r\n\r\n    // Build file info\r\n    const files: FileInfo[] = [];\r\n    for (const relativePath of allFiles) {\r\n      const fullPath = path.join(this.rootPath, relativePath);\r\n      try {\r\n        const stat = await fs.stat(fullPath);\r\n        files.push({\r\n          path: fullPath,\r\n          relativePath,\r\n          extension: path.extname(relativePath),\r\n          size: stat.size,\r\n          isTest: this.isTestFile(relativePath),\r\n          isConfig: this.isConfigFile(relativePath),\r\n        });\r\n      } catch {\r\n        // Skip files we can't stat\r\n      }\r\n    }\r\n\r\n    // Detect language\r\n    const language = this.detectLanguage(files);\r\n\r\n    // Detect framework\r\n    const framework = await this.detectFramework(files);\r\n\r\n    // Find config files\r\n    const configFiles = files.filter((f) => f.isConfig).map((f) => f.relativePath);\r\n\r\n    // Find test files\r\n    const testFiles = files.filter((f) => f.isTest).map((f) => f.relativePath);\r\n\r\n    // Find source directories\r\n    const sourceDirectories = this.detectSourceDirectories(files);\r\n\r\n    return {\r\n      rootPath: this.rootPath,\r\n      files,\r\n      language,\r\n      framework,\r\n      configFiles,\r\n      testFiles,\r\n      sourceDirectories,\r\n    };\r\n  }\r\n\r\n  private detectLanguage(files: FileInfo[]): string {\r\n    const extCounts: Record<string, number> = {};\r\n\r\n    for (const file of files) {\r\n      if (file.extension) {\r\n        extCounts[file.extension] = (extCounts[file.extension] || 0) + 1;\r\n      }\r\n    }\r\n\r\n    // Priority mapping\r\n    const languageMap: Record<string, string> = {\r\n      \".ts\": \"TypeScript\",\r\n      \".tsx\": \"TypeScript\",\r\n      \".js\": \"JavaScript\",\r\n      \".jsx\": \"JavaScript\",\r\n      \".py\": \"Python\",\r\n      \".go\": \"Go\",\r\n      \".rs\": \"Rust\",\r\n      \".java\": \"Java\",\r\n      \".cs\": \"C#\",\r\n      \".rb\": \"Ruby\",\r\n      \".php\": \"PHP\",\r\n    };\r\n\r\n    // Find most common language\r\n    let maxCount = 0;\r\n    let detectedLang = \"Unknown\";\r\n\r\n    for (const [ext, lang] of Object.entries(languageMap)) {\r\n      if (extCounts[ext] && extCounts[ext] > maxCount) {\r\n        maxCount = extCounts[ext];\r\n        detectedLang = lang;\r\n      }\r\n    }\r\n\r\n    // Check for TypeScript config to override JS detection\r\n    if (detectedLang === \"JavaScript\" && files.some((f) => f.relativePath.includes(\"tsconfig\"))) {\r\n      detectedLang = \"TypeScript\";\r\n    }\r\n\r\n    return detectedLang;\r\n  }\r\n\r\n  private async detectFramework(files: FileInfo[]): Promise<string | null> {\r\n    const fileSet = new Set(files.map((f) => f.relativePath));\r\n    const hasFile = (name: string) => fileSet.has(name);\r\n\r\n    // Check package.json for dependencies\r\n    if (hasFile(\"package.json\")) {\r\n      try {\r\n        const content = await fs.readFile(path.join(this.rootPath, \"package.json\"), \"utf-8\");\r\n        const pkg = JSON.parse(content);\r\n        const deps = { ...pkg.dependencies, ...pkg.devDependencies };\r\n\r\n        if (deps[\"next\"]) return \"Next.js\";\r\n        if (deps[\"react\"]) return \"React\";\r\n        if (deps[\"vue\"]) return \"Vue\";\r\n        if (deps[\"@angular/core\"]) return \"Angular\";\r\n        if (deps[\"express\"]) return \"Express.js\";\r\n        if (deps[\"fastify\"]) return \"Fastify\";\r\n        if (deps[\"nestjs\"]) return \"NestJS\";\r\n      } catch {\r\n        // Ignore parse errors\r\n      }\r\n    }\r\n\r\n    // Python frameworks\r\n    if (hasFile(\"pyproject.toml\") || hasFile(\"requirements.txt\")) {\r\n      const reqPath = hasFile(\"requirements.txt\")\r\n        ? path.join(this.rootPath, \"requirements.txt\")\r\n        : null;\r\n      if (reqPath) {\r\n        try {\r\n          const content = await fs.readFile(reqPath, \"utf-8\");\r\n          if (content.includes(\"django\")) return \"Django\";\r\n          if (content.includes(\"flask\")) return \"Flask\";\r\n          if (content.includes(\"fastapi\")) return \"FastAPI\";\r\n        } catch {\r\n          // Ignore\r\n        }\r\n      }\r\n    }\r\n\r\n    // Go frameworks\r\n    if (hasFile(\"go.mod\")) {\r\n      try {\r\n        const content = await fs.readFile(path.join(this.rootPath, \"go.mod\"), \"utf-8\");\r\n        if (content.includes(\"gin-gonic\")) return \"Gin\";\r\n        if (content.includes(\"echo\")) return \"Echo\";\r\n        if (content.includes(\"fiber\")) return \"Fiber\";\r\n      } catch {\r\n        // Ignore\r\n      }\r\n    }\r\n\r\n    return null;\r\n  }\r\n\r\n  private isTestFile(relativePath: string): boolean {\r\n    const lower = relativePath.toLowerCase();\r\n    // Normalize path separators for cross-platform compatibility  \r\n    const normalized = lower.replace(/\\\\/g, \"/\");\r\n    return (\r\n      normalized.includes(\".test.\") ||\r\n      normalized.includes(\".spec.\") ||\r\n      normalized.includes(\"_test.\") ||\r\n      normalized.includes(\"test_\") ||\r\n      normalized.startsWith(\"tests/\") ||\r\n      normalized.startsWith(\"test/\") ||\r\n      normalized.startsWith(\"__tests__/\")\r\n    );\r\n  }\r\n\r\n  private isConfigFile(relativePath: string): boolean {\r\n    const basename = path.basename(relativePath);\r\n    return CONFIG_PATTERNS.some((pattern) => {\r\n      if (pattern.includes(\"*\")) {\r\n        const regex = new RegExp(pattern.replace(\"*\", \".*\"));\r\n        return regex.test(basename);\r\n      }\r\n      return basename === pattern || relativePath.includes(pattern.replace(\"*\", \"\"));\r\n    });\r\n  }\r\n\r\n  private detectSourceDirectories(files: FileInfo[]): string[] {\r\n    const dirs = new Set<string>();\r\n    const commonSrcDirs = [\"src\", \"lib\", \"app\", \"pkg\", \"internal\", \"cmd\"];\r\n\r\n    for (const file of files) {\r\n      if (file.isTest || file.isConfig) continue;\r\n\r\n      const parts = file.relativePath.split(path.sep);\r\n      if (parts.length > 1) {\r\n        const firstDir = parts[0];\r\n        if (commonSrcDirs.includes(firstDir)) {\r\n          dirs.add(firstDir);\r\n        }\r\n      }\r\n    }\r\n\r\n    // If no common src dirs, find directories with most code files\r\n    if (dirs.size === 0) {\r\n      const dirCounts: Record<string, number> = {};\r\n      for (const file of files) {\r\n        const parts = file.relativePath.split(path.sep);\r\n        if (parts.length > 1 && !file.isTest && !file.isConfig) {\r\n          dirCounts[parts[0]] = (dirCounts[parts[0]] || 0) + 1;\r\n        }\r\n      }\r\n\r\n      const sorted = Object.entries(dirCounts).sort((a, b) => b[1] - a[1]);\r\n      for (const [dir] of sorted.slice(0, 3)) {\r\n        dirs.add(dir);\r\n      }\r\n    }\r\n\r\n    return Array.from(dirs);\r\n  }\r\n}\r\n","/**\r\n * Analyzer Module - Barrel Export\r\n * Re-exports all types and analyzers for backward compatibility.\r\n */\r\n\r\n// Re-export all types\r\nexport type {\r\n  SkillDefinition,\r\n  AgentDefinition,\r\n  ToolDefinition,\r\n  HookDefinition,\r\n  AnalysisResult,\r\n} from \"./types.js\";\r\n\r\n// Re-export core utilities\r\nexport {\r\n  flattenAgents,\r\n  normalizeTools,\r\n  extractAllTools,\r\n  detectDomainBoundaries,\r\n  generateDefaultHooks,\r\n  detectToolsFromConfig,\r\n  getDefaultTools,\r\n  getSystemPrompt,\r\n  buildAnalysisPrompt,\r\n  parseAnalysisResponse,\r\n  generateDefaultSkills,\r\n} from \"./core.js\";\r\n\r\n// Re-export Zod schemas and validation\r\nexport {\r\n  SkillOutputSchema,\r\n  ToolOutputSchema,\r\n  HookOutputSchema,\r\n  AgentOutputSchema,\r\n  AnalysisOutputSchema,\r\n  validateAnalysisOutput,\r\n} from \"./schemas.js\";\r\nexport type { AnalysisOutput, AgentOutput } from \"./schemas.js\";\r\n\r\n// Re-export analyzers\r\nexport { Analyzer } from \"./local.js\";\r\nexport { RemoteAnalyzer } from \"./remote.js\";\r\n\r\n// Import classes for factory function\r\nimport { Analyzer } from \"./local.js\";\r\nimport { RemoteAnalyzer } from \"./remote.js\";\r\n\r\n// Factory function\r\nexport function createAnalyzer(\r\n  mode: \"local\",\r\n  options?: { verbose?: boolean },\r\n): Analyzer;\r\nexport function createAnalyzer(\r\n  mode: \"remote\",\r\n  options: { repoUrl: string; verbose?: boolean },\r\n): RemoteAnalyzer;\r\nexport function createAnalyzer(\r\n  mode: \"local\" | \"remote\",\r\n  options?: { repoUrl?: string; verbose?: boolean },\r\n): Analyzer | RemoteAnalyzer {\r\n  if (mode === \"remote\") {\r\n    if (!options?.repoUrl) {\r\n      throw new Error(\"repoUrl is required for remote analyzer\");\r\n    }\r\n    return new RemoteAnalyzer(options.repoUrl, options?.verbose);\r\n  }\r\n  return new Analyzer(options?.verbose);\r\n}\r\n","/**\r\n * Shared Analyzer Core\r\n * Common logic extracted from both local and remote analyzers.\r\n * \"I'd like to share a revelation that I've had...\"\r\n */\r\n\r\nimport type {\r\n  AgentDefinition,\r\n  ToolDefinition,\r\n  HookDefinition,\r\n  SkillDefinition,\r\n} from \"./types.js\";\r\nimport { validateAnalysisOutput } from \"./schemas.js\";\r\n\r\n/**\r\n * Flatten nested sub-agents into a flat array.\r\n * The SDK may return sub-agents as objects inside parent.subAgents[].\r\n * We need them as separate entries in the agents array.\r\n */\r\nexport function flattenAgents(agents: unknown[]): AgentDefinition[] {\r\n  const result: AgentDefinition[] = [];\r\n\r\n  for (const rawAgent of agents) {\r\n    if (!rawAgent || typeof rawAgent !== \"object\") continue;\r\n\r\n    const agent = rawAgent as Record<string, unknown>;\r\n\r\n    // Extract nested sub-agent objects\r\n    const nestedSubAgents: unknown[] = [];\r\n    const subAgentNames: string[] = [];\r\n\r\n    const subAgentsArray = agent.subAgents as unknown[];\r\n    if (Array.isArray(subAgentsArray) && subAgentsArray.length > 0) {\r\n      for (const subAgent of subAgentsArray) {\r\n        if (typeof subAgent === \"object\" && subAgent !== null && \"name\" in subAgent) {\r\n          // It's a nested agent object - extract it\r\n          const nestedAgent = subAgent as Record<string, unknown>;\r\n          nestedAgent.isSubAgent = true;\r\n          nestedAgent.parentAgent = agent.name as string;\r\n          nestedSubAgents.push(nestedAgent);\r\n          subAgentNames.push(nestedAgent.name as string);\r\n        } else if (typeof subAgent === \"string\") {\r\n          // It's just a name reference\r\n          subAgentNames.push(subAgent);\r\n        }\r\n      }\r\n    }\r\n\r\n    // Build normalized agent\r\n    const normalizedAgent: AgentDefinition = {\r\n      name: String(agent.name || \"unknown\"),\r\n      description: String(agent.description || \"\"),\r\n      skills: Array.isArray(agent.skills) ? agent.skills.map((s: unknown) => String(s)) : [],\r\n      tools: normalizeTools(agent.tools),\r\n      isSubAgent: Boolean(agent.isSubAgent),\r\n      parentAgent: agent.parentAgent ? String(agent.parentAgent) : undefined,\r\n      subAgents: subAgentNames.length > 0 ? subAgentNames : undefined,\r\n      triggers: Array.isArray(agent.triggers) ? agent.triggers.map((t: unknown) => String(t)) : [],\r\n      sourceDir: agent.sourceDir ? String(agent.sourceDir) : undefined,\r\n    };\r\n\r\n    result.push(normalizedAgent);\r\n\r\n    // Recursively flatten any nested sub-agents\r\n    if (nestedSubAgents.length > 0) {\r\n      result.push(...flattenAgents(nestedSubAgents));\r\n    }\r\n  }\r\n\r\n  return result;\r\n}\r\n\r\n/**\r\n * Normalize tools to ToolDefinition format.\r\n * SDK may return tools as strings or objects.\r\n */\r\nexport function normalizeTools(tools: unknown): ToolDefinition[] {\r\n  if (!tools || !Array.isArray(tools)) {\r\n    return [];\r\n  }\r\n\r\n  return tools.map((tool: unknown) => {\r\n    if (typeof tool === \"string\") {\r\n      return {\r\n        name: tool.split(\" \")[0],\r\n        command: tool,\r\n        description: tool,\r\n      };\r\n    }\r\n    if (typeof tool === \"object\" && tool !== null) {\r\n      const t = tool as Record<string, unknown>;\r\n      return {\r\n        name: String(t.name || \"unknown\"),\r\n        command: String(t.command || t.name || \"\"),\r\n        description: String(t.description || t.name || \"\"),\r\n      };\r\n    }\r\n    return {\r\n      name: \"unknown\",\r\n      command: String(tool),\r\n      description: String(tool),\r\n    };\r\n  });\r\n}\r\n\r\n/**\r\n * Extract all tools from a list of agents.\r\n */\r\nexport function extractAllTools(agents: AgentDefinition[]): ToolDefinition[] {\r\n  const tools: ToolDefinition[] = [];\r\n  for (const agent of agents) {\r\n    if (agent.tools) {\r\n      tools.push(...agent.tools);\r\n    }\r\n  }\r\n  return tools;\r\n}\r\n\r\n/**\r\n * Detect domain boundaries from a file list.\r\n * @param files - Array of objects with relativePath, isTest, isConfig properties\r\n * @param pathSep - Path separator to use (e.g., path.sep for local, \"/\" for remote)\r\n */\r\nexport function detectDomainBoundaries(\r\n  files: ReadonlyArray<{ relativePath: string; isTest: boolean; isConfig: boolean }>,\r\n  pathSep: string,\r\n): Array<{ name: string; path: string; fileCount: number }> {\r\n  const domains: Map<string, { path: string; fileCount: number; subDirs: Set<string> }> = new Map();\r\n\r\n  // Common domain patterns\r\n  const domainPatterns = [\r\n    \"api\", \"auth\", \"backend\", \"frontend\", \"core\", \"common\", \"shared\",\r\n    \"services\", \"handlers\", \"controllers\", \"models\", \"views\", \"routes\",\r\n    \"components\", \"hooks\", \"utils\", \"lib\", \"pkg\", \"internal\", \"cmd\",\r\n    \"client\", \"server\", \"admin\", \"public\", \"private\", \"modules\",\r\n  ];\r\n\r\n  for (const file of files) {\r\n    if (file.isTest || file.isConfig) continue;\r\n\r\n    const parts = file.relativePath.split(pathSep);\r\n    if (parts.length < 2) continue;\r\n\r\n    const topDir = parts[0];\r\n    const secondDir = parts.length > 2 ? parts[1] : null;\r\n\r\n    // Track top-level domains\r\n    if (!domains.has(topDir)) {\r\n      domains.set(topDir, { path: topDir, fileCount: 0, subDirs: new Set() });\r\n    }\r\n    const domain = domains.get(topDir)!;\r\n    domain.fileCount++;\r\n\r\n    // Track sub-domains\r\n    if (secondDir && domainPatterns.includes(secondDir.toLowerCase())) {\r\n      domain.subDirs.add(secondDir);\r\n    }\r\n  }\r\n\r\n  // Filter to significant domains (>5 files) and sort by file count\r\n  return Array.from(domains.entries())\r\n    .filter(([name, info]) => info.fileCount > 5 && domainPatterns.includes(name.toLowerCase()))\r\n    .map(([name, info]) => ({ name, path: info.path, fileCount: info.fileCount }))\r\n    .sort((a, b) => b.fileCount - a.fileCount);\r\n}\r\n\r\n/**\r\n * Generate default hooks based on language and whether test files exist.\r\n */\r\nexport function generateDefaultHooks(language: string, testFilesExist: boolean): HookDefinition[] {\r\n  const hooks: HookDefinition[] = [];\r\n\r\n  if (language === \"TypeScript\" || language === \"JavaScript\") {\r\n    hooks.push({\r\n      name: \"pre-commit-quality\",\r\n      event: \"pre-commit\",\r\n      description: \"Run linting and type checking before commit\",\r\n      commands: [\"npm run lint\", \"npm run build\"],\r\n    });\r\n\r\n    if (testFilesExist) {\r\n      hooks.push({\r\n        name: \"pre-push-tests\",\r\n        event: \"pre-push\",\r\n        description: \"Run tests before pushing\",\r\n        commands: [\"npm test\"],\r\n      });\r\n    }\r\n  } else if (language === \"Python\") {\r\n    hooks.push({\r\n      name: \"pre-commit-quality\",\r\n      event: \"pre-commit\",\r\n      description: \"Run linting and formatting before commit\",\r\n      commands: [\"ruff check .\", \"ruff format --check .\"],\r\n    });\r\n\r\n    if (testFilesExist) {\r\n      hooks.push({\r\n        name: \"pre-push-tests\",\r\n        event: \"pre-push\",\r\n        description: \"Run tests before pushing\",\r\n        commands: [\"pytest\"],\r\n      });\r\n    }\r\n  } else if (language === \"Go\") {\r\n    hooks.push({\r\n      name: \"pre-commit-quality\",\r\n      event: \"pre-commit\",\r\n      description: \"Run linting and formatting before commit\",\r\n      commands: [\"go fmt ./...\", \"golangci-lint run\"],\r\n    });\r\n\r\n    if (testFilesExist) {\r\n      hooks.push({\r\n        name: \"pre-push-tests\",\r\n        event: \"pre-push\",\r\n        description: \"Run tests before pushing\",\r\n        commands: [\"go test ./...\"],\r\n      });\r\n    }\r\n  }\r\n\r\n  // Post-generate hook for Agent Smith specific workflow\r\n  hooks.push({\r\n    name: \"post-generate-validate\",\r\n    event: \"post-generate\",\r\n    description: \"Validate generated agent assets after generation\",\r\n    commands: [\"npx agentsmith validate\"],\r\n  });\r\n\r\n  return hooks;\r\n}\r\n\r\n/**\r\n * Detect tools from config based on language and config files.\r\n */\r\nexport function detectToolsFromConfig(language: string, configFiles: string[]): ToolDefinition[] {\r\n  const tools: ToolDefinition[] = [];\r\n\r\n  if (language === \"TypeScript\" || language === \"JavaScript\") {\r\n    if (configFiles.includes(\"package.json\")) {\r\n      tools.push(\r\n        { name: \"install\", command: \"npm install\", description: \"Install dependencies\" },\r\n        { name: \"build\", command: \"npm run build\", description: \"Build the project\" },\r\n        { name: \"test\", command: \"npm test\", description: \"Run tests\" },\r\n        { name: \"lint\", command: \"npm run lint\", description: \"Run linter\" },\r\n      );\r\n    }\r\n  } else if (language === \"Python\") {\r\n    tools.push(\r\n      { name: \"install\", command: \"pip install -e .\", description: \"Install dependencies\" },\r\n      { name: \"test\", command: \"pytest\", description: \"Run tests\" },\r\n      { name: \"lint\", command: \"ruff check .\", description: \"Run linter\" },\r\n    );\r\n  } else if (language === \"Go\") {\r\n    tools.push(\r\n      { name: \"build\", command: \"go build ./...\", description: \"Build the project\" },\r\n      { name: \"test\", command: \"go test ./...\", description: \"Run tests\" },\r\n      { name: \"lint\", command: \"golangci-lint run\", description: \"Run linter\" },\r\n    );\r\n  }\r\n\r\n  return tools;\r\n}\r\n\r\n/**\r\n * Build a system prompt for Copilot SDK analysis.\r\n * @param language - Detected language\r\n * @param domains - Optional detected domain boundaries\r\n */\r\nexport function getSystemPrompt(\r\n  language: string,\r\n  domains?: Array<{ name: string }>,\r\n): string {\r\n  const domainHints = domains && domains.length > 0\r\n    ? `\\nPotential domains detected: ${domains.map(d => d.name).join(\", \")}`\r\n    : \"\";\r\n\r\n  return `You are Agent Smith, an AI designed to assimilate repositories into agent hierarchies.\r\n\r\nYour task: Analyze this ${language} repository and extract:\r\n1. SKILLS - Reusable patterns, conventions, and capabilities specific to parts of this codebase\r\n2. AGENTS - Domain-specific agents with clear responsibilities\r\n3. SUB-AGENTS - Child agents for complex domains (e.g., auth/oauth, auth/rbac under auth)\r\n4. NESTED AGENTS - Multi-level hierarchies for large codebases\r\n5. TOOLS - Commands that can be run (build, test, lint, deploy, etc.)\r\n\r\n## Agent Hierarchy Guidelines\r\n- Create a ROOT agent for the overall repository\r\n- Create SUB-AGENTS for major domains (backend, frontend, api, auth, data)\r\n- Create NESTED agents when a domain has sub-domains (api/v1, api/v2, api/graphql)\r\n- Each agent should have 2-5 skills max; split if more are needed\r\n${domainHints}\r\n\r\nFor each SKILL, identify:\r\n- A kebab-case name (max 64 chars)\r\n- A clear description of when to use it\r\n- The source directory it relates to\r\n- The patterns and conventions it embodies\r\n- Keywords that trigger its relevance\r\n- Category: architecture, reliability, quality, security, or patterns\r\n\r\nFor AGENTS, determine:\r\n- Natural domain boundaries based on directory structure\r\n- Parent-child relationships (isSubAgent: true for children)\r\n- Which skills each agent owns (skills should not overlap between agents)\r\n- Tools specific to that agent's domain\r\n\r\nRespond in valid JSON format only. No markdown, no explanation.`;\r\n}\r\n\r\n/**\r\n * Build the analysis prompt with file list and samples.\r\n */\r\nexport function buildAnalysisPrompt(\r\n  language: string,\r\n  framework: string | null | undefined,\r\n  sourceDirectories: string[],\r\n  configFiles: string[],\r\n  fileList: string,\r\n  sampleContent: string,\r\n): string {\r\n  return `Analyze this ${language} repository.\r\n\r\n## Repository Structure\r\nLanguage: ${language}\r\nFramework: ${framework || \"None\"}\r\nSource directories: ${sourceDirectories.join(\", \")}\r\nConfig files: ${configFiles.join(\", \")}\r\n\r\n## File List (first 100)\r\n${fileList}\r\n\r\n## File Samples\r\n${sampleContent}\r\n\r\n## Instructions\r\nExtract skills, agents (with hierarchy), and tools from this codebase. Return JSON:\r\n\r\n{\r\n  \"skills\": [\r\n    {\r\n      \"name\": \"skill-name\",\r\n      \"description\": \"When and how to use this pattern\",\r\n      \"sourceDir\": \"src/auth\",\r\n      \"patterns\": [\"pattern 1\", \"pattern 2\"],\r\n      \"triggers\": [\"keyword1\", \"keyword2\"],\r\n      \"category\": \"architecture|reliability|quality|security|patterns\",\r\n      \"examples\": [\"example code snippet or reference\"]\r\n    }\r\n  ],\r\n  \"agents\": [\r\n    {\r\n      \"name\": \"root\",\r\n      \"description\": \"Main agent for the repository\",\r\n      \"skills\": [\"overview-skill\"],\r\n      \"tools\": [{\"name\": \"build\", \"command\": \"npm run build\", \"description\": \"Build the project\"}],\r\n      \"isSubAgent\": false,\r\n      \"subAgents\": [\"backend\", \"frontend\"],\r\n      \"sourceDir\": \"\",\r\n      \"triggers\": [\"main\", \"primary\"]\r\n    },\r\n    {\r\n      \"name\": \"backend\",\r\n      \"description\": \"Backend domain agent\",\r\n      \"skills\": [\"api-patterns\", \"db-access\"],\r\n      \"tools\": [],\r\n      \"isSubAgent\": true,\r\n      \"parentAgent\": \"root\",\r\n      \"subAgents\": [\"auth\"],\r\n      \"sourceDir\": \"src/backend\",\r\n      \"triggers\": [\"backend\", \"server\", \"api\"]\r\n    },\r\n    {\r\n      \"name\": \"auth\",\r\n      \"description\": \"Authentication sub-agent\",\r\n      \"skills\": [\"oauth-flow\"],\r\n      \"tools\": [],\r\n      \"isSubAgent\": true,\r\n      \"parentAgent\": \"backend\",\r\n      \"sourceDir\": \"src/backend/auth\",\r\n      \"triggers\": [\"auth\", \"login\", \"oauth\"]\r\n    }\r\n  ],\r\n  \"summary\": \"One paragraph describing the repository's architecture and purpose\"\r\n}`;\r\n}\r\n\r\n/**\r\n * Parse a JSON analysis response from the SDK.\r\n * Extracts JSON from potentially mixed content and validates with Zod.\r\n * @param response - Raw response string\r\n * @param fallbackFn - Function to call if parsing or validation fails\r\n */\r\nexport function parseAnalysisResponse<T>(\r\n  response: string,\r\n  fallbackFn: () => T,\r\n): { skills: unknown[]; agents: unknown[]; hooks: unknown[]; summary: string } | T {\r\n  try {\r\n    const jsonMatch = response.match(/\\{[\\s\\S]*\\}/);\r\n    if (!jsonMatch) {\r\n      throw new Error(\"No JSON found in response\");\r\n    }\r\n\r\n    const raw = JSON.parse(jsonMatch[0]) as unknown;\r\n\r\n    // Validate through Zod schema — applies defaults and type checks\r\n    const validated = validateAnalysisOutput(raw);\r\n    if (!validated) {\r\n      console.warn(\"  [Zod] Validation failed, falling back\");\r\n      return fallbackFn();\r\n    }\r\n\r\n    return {\r\n      skills: validated.skills as unknown[],\r\n      agents: validated.agents as unknown[],\r\n      hooks: (validated.hooks ?? []) as unknown[],\r\n      summary: validated.summary,\r\n    };\r\n  } catch {\r\n    return fallbackFn();\r\n  }\r\n}\r\n\r\n/**\r\n * Generate default skills based on detected source directories.\r\n */\r\nexport function generateDefaultSkills(sourceDirectories: string[]): SkillDefinition[] {\r\n  return sourceDirectories.map((dir) => ({\r\n    name: `${dir}-patterns`,\r\n    description: `Patterns and conventions from the ${dir} directory`,\r\n    sourceDir: dir,\r\n    patterns: [],\r\n    triggers: [dir],\r\n    category: \"patterns\",\r\n    examples: [],\r\n  }));\r\n}\r\n\r\n/**\r\n * Get default tools for a language without checking config files.\r\n * Used by the remote analyzer fallback where we don't have filesystem access.\r\n */\r\nexport function getDefaultTools(language: string): ToolDefinition[] {\r\n  if (language === \"TypeScript\" || language === \"JavaScript\") {\r\n    return [\r\n      { name: \"install\", command: \"npm install\", description: \"Install dependencies\" },\r\n      { name: \"build\", command: \"npm run build\", description: \"Build\" },\r\n      { name: \"test\", command: \"npm test\", description: \"Run tests\" },\r\n    ];\r\n  } else if (language === \"Python\") {\r\n    return [\r\n      { name: \"install\", command: \"pip install -e .\", description: \"Install\" },\r\n      { name: \"test\", command: \"pytest\", description: \"Run tests\" },\r\n    ];\r\n  } else if (language === \"Go\") {\r\n    return [\r\n      { name: \"build\", command: \"go build ./...\", description: \"Build\" },\r\n      { name: \"test\", command: \"go test ./...\", description: \"Run tests\" },\r\n    ];\r\n  }\r\n  return [];\r\n}\r\n","/**\r\n * Zod Validation Schemas for LLM Output\r\n * Validates the unpredictable JSON returned by CopilotClient sessions.\r\n * \"Never send a human to do a machine's job.\"\r\n */\r\n\r\nimport { z } from \"zod\";\r\n\r\n/** Schema for a single skill in LLM output */\r\nexport const SkillOutputSchema = z.object({\r\n  name: z.string().min(1).max(64),\r\n  description: z.string().min(1),\r\n  sourceDir: z.string().default(\"\"),\r\n  patterns: z.array(z.string()).default([]),\r\n  triggers: z.array(z.string()).default([]),\r\n  category: z\r\n    .enum([\"architecture\", \"reliability\", \"quality\", \"security\", \"patterns\"])\r\n    .default(\"patterns\"),\r\n  examples: z.array(z.string()).default([]),\r\n});\r\n\r\n/** Schema for a tool in LLM output — may be an object or a bare string */\r\nexport const ToolOutputSchema = z.union([\r\n  z.object({\r\n    name: z.string().min(1),\r\n    command: z.string().default(\"\"),\r\n    description: z.string().default(\"\"),\r\n  }),\r\n  z.string().min(1),\r\n]);\r\n\r\n/** Schema for a hook in LLM output */\r\nexport const HookOutputSchema = z.object({\r\n  name: z.string().min(1),\r\n  event: z.string().min(1),\r\n  description: z.string().default(\"\"),\r\n  commands: z.array(z.string()).default([]),\r\n  condition: z.string().optional(),\r\n});\r\n\r\n/** Inferred type for a single agent (used by the lazy schema below) */\r\nexport type AgentOutput = {\r\n  name: string;\r\n  description: string;\r\n  skills: string[];\r\n  tools: (string | { name: string; command: string; description: string })[];\r\n  isSubAgent: boolean;\r\n  parentAgent?: string;\r\n  subAgents: (AgentOutput | string)[];\r\n  triggers: string[];\r\n  sourceDir?: string;\r\n};\r\n\r\n/**\r\n * Schema for an agent in LLM output.\r\n * subAgents can be nested agent objects or string references — handled via z.lazy().\r\n */\r\nexport const AgentOutputSchema: z.ZodType<AgentOutput, z.ZodTypeDef, unknown> = z.lazy(() =>\r\n  z.object({\r\n    name: z.string().min(1),\r\n    description: z.string().default(\"\"),\r\n    skills: z.array(z.string()).default([]),\r\n    tools: z.array(ToolOutputSchema).default([]),\r\n    isSubAgent: z.boolean().default(false),\r\n    parentAgent: z.string().optional(),\r\n    subAgents: z\r\n      .array(z.union([AgentOutputSchema, z.string()]))\r\n      .default([]),\r\n    triggers: z.array(z.string()).default([]),\r\n    sourceDir: z.string().optional(),\r\n  }),\r\n);\r\n\r\n/** Schema for the complete LLM analysis response */\r\nexport const AnalysisOutputSchema = z.object({\r\n  skills: z.array(SkillOutputSchema).default([]),\r\n  agents: z.array(AgentOutputSchema).default([]),\r\n  summary: z.string().default(\"\"),\r\n  hooks: z.array(HookOutputSchema).optional(),\r\n});\r\n\r\n/** Inferred type for a validated analysis response */\r\nexport type AnalysisOutput = z.infer<typeof AnalysisOutputSchema>;\r\n\r\n/**\r\n * Validate raw parsed JSON against the AnalysisOutputSchema.\r\n * Returns the validated + defaulted data, or null if validation fails.\r\n * Errors are logged with field paths for debugging.\r\n */\r\nexport function validateAnalysisOutput(data: unknown): AnalysisOutput | null {\r\n  const result = AnalysisOutputSchema.safeParse(data);\r\n  if (result.success) {\r\n    return result.data;\r\n  }\r\n\r\n  // Log structured Zod errors with paths\r\n  for (const issue of result.error.issues) {\r\n    const path = issue.path.length > 0 ? issue.path.join(\".\") : \"(root)\";\r\n    console.warn(`  [Zod] ${path}: ${issue.message}`);\r\n  }\r\n\r\n  return null;\r\n}\r\n","/**\r\n * Local Analyzer - The Mind of Agent Smith\r\n * Uses GitHub Copilot SDK to perform deep semantic analysis of a local repository.\r\n * \"The best thing about being me... there are so many of me.\"\r\n */\r\n\r\nimport { CopilotClient, approveAll } from \"@github/copilot-sdk\";\r\nimport fs from \"fs/promises\";\r\nimport path from \"path\";\r\nimport type { ScanResult } from \"../scanner/index.js\";\r\nimport type { AnalysisResult, SkillDefinition, ToolDefinition, AgentDefinition } from \"./types.js\";\r\nimport {\r\n  flattenAgents,\r\n  extractAllTools,\r\n  detectDomainBoundaries,\r\n  generateDefaultHooks,\r\n  detectToolsFromConfig,\r\n  getSystemPrompt,\r\n  buildAnalysisPrompt,\r\n  parseAnalysisResponse,\r\n  generateDefaultSkills,\r\n} from \"./core.js\";\r\n\r\nexport class Analyzer {\r\n  private verbose: boolean;\r\n  private client: CopilotClient | null = null;\r\n\r\n  constructor(verbose = false) {\r\n    this.verbose = verbose;\r\n  }\r\n\r\n  async analyze(scanResult: ScanResult): Promise<AnalysisResult> {\r\n    // Initialize Copilot SDK\r\n    if (this.verbose) {\r\n      console.log(\"  [SDK] Initializing CopilotClient...\");\r\n    }\r\n\r\n    this.client = new CopilotClient({\r\n      logLevel: this.verbose ? \"debug\" : \"error\",\r\n    });\r\n\r\n    if (this.verbose) {\r\n      console.log(\"  [SDK] Starting client...\");\r\n    }\r\n\r\n    try {\r\n      await this.client.start();\r\n    } catch (error) {\r\n      console.error(\"  [SDK] Failed to start client:\", (error as Error).message);\r\n      console.error(\"  [SDK] Make sure Copilot CLI is installed and in PATH\");\r\n      console.error(\"  [SDK] Falling back to heuristic analysis...\\n\");\r\n      return this.generateFallbackAnalysis(scanResult);\r\n    }\r\n\r\n    if (this.verbose) {\r\n      console.log(\"  [SDK] Client started successfully\");\r\n    }\r\n\r\n    try {\r\n      if (this.verbose) {\r\n        console.log(\"  [SDK] Creating session with model: gpt-5...\");\r\n      }\r\n\r\n      // Detect potential domain boundaries for system prompt\r\n      const domains = detectDomainBoundaries(scanResult.files, path.sep);\r\n\r\n      // Create a session with custom tools for analysis\r\n      const session = await this.client.createSession({\r\n        model: \"gpt-5\",\r\n        streaming: true,\r\n        systemMessage: {\r\n          content: getSystemPrompt(scanResult.language, domains),\r\n        },\r\n        onPermissionRequest: approveAll,\r\n      });\r\n\r\n      if (this.verbose) {\r\n        console.log(\"  [SDK] Session created successfully\");\r\n      }\r\n\r\n      // Prepare file samples for analysis\r\n      const samples = await this.gatherFileSamples(scanResult);\r\n\r\n      if (this.verbose) {\r\n        console.log(`  [SDK] Gathered ${samples.size} file samples`);\r\n      }\r\n\r\n      // Build the analysis prompt\r\n      const fileList = scanResult.files.slice(0, 100).map((f) => f.relativePath).join(\"\\n\");\r\n      let sampleContent = \"\";\r\n      for (const [filePath, content] of samples) {\r\n        sampleContent += `\\n--- ${filePath} ---\\n${content}\\n`;\r\n      }\r\n\r\n      const analysisPrompt = buildAnalysisPrompt(\r\n        scanResult.language,\r\n        scanResult.framework,\r\n        scanResult.sourceDirectories,\r\n        scanResult.configFiles,\r\n        fileList,\r\n        sampleContent,\r\n      );\r\n\r\n      if (this.verbose) {\r\n        console.log(`  [SDK] Sending prompt (${analysisPrompt.length} chars)...`);\r\n      }\r\n\r\n      let responseContent = \"\";\r\n      let eventCount = 0;\r\n\r\n      const done = new Promise<void>((resolve, reject) => {\r\n        const timeout = setTimeout(() => {\r\n          console.error(`\\n  [SDK] Timeout after 120s. Events received: ${eventCount}`);\r\n          reject(new Error(\"SDK timeout\"));\r\n        }, 120000);\r\n\r\n        session.on((event) => {\r\n          eventCount++;\r\n          const eventType = event.type as string;\r\n          const eventData = event.data as Record<string, unknown>;\r\n\r\n          if (this.verbose && eventType !== \"assistant.message_delta\") {\r\n            console.log(`  [SDK] Event: ${eventType}`);\r\n          }\r\n\r\n          if (eventType === \"assistant.message\") {\r\n            responseContent = (eventData.content as string) || \"\";\r\n            if (this.verbose) {\r\n              console.log(`  [SDK] Got final message (${responseContent.length} chars)`);\r\n            }\r\n          } else if (eventType === \"assistant.message_delta\") {\r\n            process.stdout.write((eventData.deltaContent as string) || \"\");\r\n          } else if (eventType === \"session.idle\") {\r\n            clearTimeout(timeout);\r\n            if (this.verbose) {\r\n              console.log(`  [SDK] Session idle. Total events: ${eventCount}`);\r\n            }\r\n            resolve();\r\n          } else if (eventType === \"error\") {\r\n            clearTimeout(timeout);\r\n            console.error(\"  [SDK] Error event:\", eventData);\r\n            reject(new Error(\"SDK error event\"));\r\n          }\r\n        });\r\n      });\r\n\r\n      await session.send({ prompt: analysisPrompt });\r\n\r\n      if (this.verbose) {\r\n        console.log(\"  [SDK] Prompt sent, waiting for response...\");\r\n      }\r\n\r\n      await done;\r\n\r\n      if (this.verbose) {\r\n        console.log(\"\\n\");\r\n      }\r\n\r\n      // Parse the response\r\n      const result = this.buildResult(responseContent, scanResult);\r\n\r\n      await session.destroy();\r\n      return result;\r\n    } catch (error) {\r\n      console.error(`\\n  [SDK] Error: ${(error as Error).message}`);\r\n      console.error(\"  [SDK] Falling back to heuristic analysis...\\n\");\r\n      return this.generateFallbackAnalysis(scanResult);\r\n    } finally {\r\n      if (this.client) {\r\n        try {\r\n          await this.client.stop();\r\n        } catch {\r\n          // Ignore cleanup errors\r\n        }\r\n      }\r\n    }\r\n  }\r\n\r\n  private async gatherFileSamples(scanResult: ScanResult): Promise<Map<string, string>> {\r\n    const samples = new Map<string, string>();\r\n    const maxSamples = 20;\r\n    const maxFileSize = 10000; // 10KB per file\r\n\r\n    // Prioritize: config files, main entry points, key directories\r\n    const priorityFiles = scanResult.files\r\n      .filter((f) => !f.isTest)\r\n      .sort((a, b) => {\r\n        // Config files first\r\n        if (a.isConfig && !b.isConfig) return -1;\r\n        if (!a.isConfig && b.isConfig) return 1;\r\n\r\n        // Then by directory depth (shallower = more important)\r\n        const depthA = a.relativePath.split(path.sep).length;\r\n        const depthB = b.relativePath.split(path.sep).length;\r\n        return depthA - depthB;\r\n      })\r\n      .slice(0, maxSamples);\r\n\r\n    for (const file of priorityFiles) {\r\n      if (file.size > maxFileSize) continue;\r\n\r\n      try {\r\n        const content = await fs.readFile(file.path, \"utf-8\");\r\n        samples.set(file.relativePath, content.slice(0, maxFileSize));\r\n      } catch {\r\n        // Skip unreadable files\r\n      }\r\n    }\r\n\r\n    return samples;\r\n  }\r\n\r\n  private buildResult(response: string, scanResult: ScanResult): AnalysisResult {\r\n    const parsed = parseAnalysisResponse(response, () => null);\r\n\r\n    if (parsed === null) {\r\n      return this.generateFallbackAnalysis(scanResult);\r\n    }\r\n\r\n    const flatAgents = flattenAgents(parsed.agents);\r\n\r\n    return {\r\n      repoName: path.basename(scanResult.rootPath),\r\n      skills: parsed.skills as SkillDefinition[],\r\n      agents: flatAgents,\r\n      tools: extractAllTools(flatAgents),\r\n      hooks: parsed.hooks.length > 0\r\n        ? (parsed.hooks as AnalysisResult[\"hooks\"])\r\n        : generateDefaultHooks(scanResult.language, scanResult.testFiles.length > 0),\r\n      summary: parsed.summary,\r\n    };\r\n  }\r\n\r\n  private generateFallbackAnalysis(scanResult: ScanResult): AnalysisResult {\r\n    // Detect domains for hierarchical agent structure\r\n    const domains = detectDomainBoundaries(scanResult.files, path.sep);\r\n\r\n    // Generate basic skills based on detected directories\r\n    const skills: SkillDefinition[] = generateDefaultSkills(scanResult.sourceDirectories);\r\n\r\n    // Generate tools from config\r\n    const tools: ToolDefinition[] = detectToolsFromConfig(scanResult.language, scanResult.configFiles);\r\n\r\n    // Build hierarchical agents\r\n    const agents: AgentDefinition[] = [];\r\n    const subAgentNames: string[] = [];\r\n\r\n    // Create sub-agents for each detected domain\r\n    for (const domain of domains) {\r\n      const domainSkills = skills.filter(\r\n        (s) => s.sourceDir === domain.path || s.sourceDir.startsWith(domain.path + path.sep),\r\n      );\r\n      subAgentNames.push(domain.name);\r\n\r\n      agents.push({\r\n        name: domain.name,\r\n        description: `Agent for the ${domain.name} domain (${domain.fileCount} files)`,\r\n        skills: domainSkills.map((s) => s.name),\r\n        tools: [],\r\n        isSubAgent: true,\r\n        parentAgent: \"root\",\r\n        sourceDir: domain.path,\r\n        triggers: [domain.name.toLowerCase()],\r\n      });\r\n    }\r\n\r\n    // Create root agent\r\n    const rootSkills = skills.filter(\r\n      (s) => !domains.some((d) => s.sourceDir.startsWith(d.path)),\r\n    );\r\n    agents.unshift({\r\n      name: \"root\",\r\n      description: `Root agent for this ${scanResult.language} repository`,\r\n      skills: rootSkills.map((s) => s.name),\r\n      tools,\r\n      isSubAgent: false,\r\n      subAgents: subAgentNames,\r\n      triggers: [scanResult.language.toLowerCase(), \"main\", \"primary\"],\r\n    });\r\n\r\n    // Generate hooks\r\n    const hooks = generateDefaultHooks(scanResult.language, scanResult.testFiles.length > 0);\r\n\r\n    return {\r\n      repoName: path.basename(scanResult.rootPath),\r\n      skills,\r\n      agents,\r\n      tools,\r\n      hooks,\r\n      summary: `A ${scanResult.language} repository${scanResult.framework ? ` using ${scanResult.framework}` : \"\"} with ${domains.length} detected domains.`,\r\n    };\r\n  }\r\n}\r\n","/**\r\n * Remote Analyzer - Analyzes GitHub repos directly without cloning\r\n * Uses GitHub Copilot SDK with GitHub API for file access\r\n */\r\n\r\nimport { CopilotClient, approveAll } from \"@github/copilot-sdk\";\r\nimport type { GitHubFile } from \"../github/index.js\";\r\nimport { GitHubClient } from \"../github/index.js\";\r\nimport type { AnalysisResult, SkillDefinition, AgentDefinition } from \"./types.js\";\r\nimport {\r\n  flattenAgents,\r\n  extractAllTools,\r\n  generateDefaultHooks,\r\n  getDefaultTools,\r\n  parseAnalysisResponse,\r\n  generateDefaultSkills,\r\n} from \"./core.js\";\r\n\r\n// Files/dirs to ignore\r\nconst IGNORE_PATTERNS = [\r\n  /^node_modules\\//,\r\n  /^\\.git\\//,\r\n  /^dist\\//,\r\n  /^build\\//,\r\n  /^\\.next\\//,\r\n  /^coverage\\//,\r\n  /^__pycache__\\//,\r\n  /^\\.venv\\//,\r\n  /^venv\\//,\r\n  /\\.lock$/,\r\n  /package-lock\\.json$/,\r\n  /yarn\\.lock$/,\r\n  /pnpm-lock\\.yaml$/,\r\n];\r\n\r\n// Config files to prioritize\r\nconst CONFIG_FILES = [\r\n  \"package.json\",\r\n  \"tsconfig.json\",\r\n  \"pyproject.toml\",\r\n  \"setup.py\",\r\n  \"go.mod\",\r\n  \"Cargo.toml\",\r\n  \"README.md\",\r\n];\r\n\r\nexport class RemoteAnalyzer {\r\n  private verbose: boolean;\r\n  private github: GitHubClient;\r\n\r\n  constructor(repoUrl: string, verbose = false) {\r\n    this.verbose = verbose;\r\n    this.github = new GitHubClient(repoUrl, verbose);\r\n  }\r\n\r\n  async analyze(): Promise<AnalysisResult> {\r\n    // Get repo info and file tree from GitHub API\r\n    if (this.verbose) {\r\n      console.log(`  [GH] Fetching repo info for ${this.github.fullName}...`);\r\n    }\r\n\r\n    const repoInfo = await this.github.getRepoInfo();\r\n    const tree = await this.github.getTree();\r\n\r\n    if (this.verbose) {\r\n      console.log(`  [GH] Found ${tree.length} files/dirs`);\r\n    }\r\n\r\n    // Filter files\r\n    const files = tree.filter(f =>\r\n      f.type === \"file\" &&\r\n      !IGNORE_PATTERNS.some(p => p.test(f.path)),\r\n    );\r\n\r\n    // Detect language from file extensions\r\n    const language = this.detectLanguage(files);\r\n    const framework = this.detectFramework(files);\r\n\r\n    if (this.verbose) {\r\n      console.log(`  [GH] Language: ${language}, Framework: ${framework || \"none\"}`);\r\n    }\r\n\r\n    // Get priority files for analysis\r\n    const priorityPaths = this.selectPriorityFiles(files);\r\n\r\n    if (this.verbose) {\r\n      console.log(`  [GH] Fetching ${priorityPaths.length} priority files...`);\r\n    }\r\n\r\n    const fileContents = await this.github.getFiles(priorityPaths);\r\n\r\n    // Build prompt for Copilot SDK\r\n    const prompt = this.buildPrompt(files, fileContents, language, framework);\r\n\r\n    if (this.verbose) {\r\n      console.log(`  [SDK] Prompt size: ${prompt.length} chars`);\r\n    }\r\n\r\n    // Analyze with Copilot SDK\r\n    const client = new CopilotClient({\r\n      logLevel: this.verbose ? \"debug\" : \"error\",\r\n    });\r\n\r\n    try {\r\n      if (this.verbose) {\r\n        console.log(\"  [SDK] Starting client...\");\r\n      }\r\n      await client.start();\r\n      if (this.verbose) {\r\n        console.log(\"  [SDK] Client started, state:\", client.getState());\r\n        console.log(\"  [SDK] Creating session...\");\r\n      }\r\n\r\n      const session = await client.createSession({\r\n        model: \"gpt-5\",\r\n        streaming: true,\r\n        systemMessage: {\r\n          content: this.getSystemPrompt(),\r\n        },\r\n        onPermissionRequest: approveAll,\r\n      });\r\n\r\n      if (this.verbose) {\r\n        console.log(`  [SDK] Session created: ${session.sessionId}`);\r\n      }\r\n\r\n      let responseContent = \"\";\r\n      let streamedContent = \"\";\r\n      let eventCount = 0;\r\n\r\n      const done = new Promise<void>((resolve) => {\r\n        const timeout = setTimeout(() => {\r\n          if (this.verbose) {\r\n            console.log(`\\n  [SDK] Session timeout - using streamed content (${streamedContent.length} chars)`);\r\n          }\r\n          resolve();\r\n        }, 120000);\r\n\r\n        session.on((event) => {\r\n          eventCount++;\r\n          const eventType = event.type as string;\r\n          const eventData = event.data as Record<string, unknown>;\r\n\r\n          if (eventType === \"assistant.message_delta\") {\r\n            const delta = (eventData.deltaContent as string) || \"\";\r\n            streamedContent += delta;\r\n            process.stdout.write(delta);\r\n          } else if (eventType === \"assistant.message\") {\r\n            responseContent = (eventData.content as string) || \"\";\r\n            clearTimeout(timeout);\r\n            resolve();\r\n          } else if (eventType === \"session.idle\") {\r\n            clearTimeout(timeout);\r\n            resolve();\r\n          } else if (eventType === \"error\") {\r\n            clearTimeout(timeout);\r\n            console.error(\"  [SDK] Error event:\", eventData);\r\n            resolve();\r\n          }\r\n        });\r\n      });\r\n\r\n      if (this.verbose) {\r\n        console.log(\"  [SDK] Sending prompt...\");\r\n      }\r\n      await session.send({ prompt });\r\n      if (this.verbose) {\r\n        console.log(\"  [SDK] Prompt sent, waiting...\");\r\n      }\r\n      await done;\r\n\r\n      console.log(\"\\n\");\r\n\r\n      await session.destroy();\r\n      await client.stop();\r\n\r\n      // Use streamed content if no complete message received\r\n      const finalContent = responseContent || streamedContent;\r\n\r\n      // Parse response\r\n      return this.buildResult(finalContent, repoInfo, language, framework);\r\n\r\n    } catch (error) {\r\n      console.error(`  [SDK] Error: ${(error as Error).message}`);\r\n      await client.stop().catch(() => {});\r\n      return this.generateFallback(repoInfo, language, framework, files);\r\n    }\r\n  }\r\n\r\n  private detectLanguage(files: GitHubFile[]): string {\r\n    const extCounts: Record<string, number> = {};\r\n    const extMap: Record<string, string> = {\r\n      \".ts\": \"TypeScript\",\r\n      \".tsx\": \"TypeScript\",\r\n      \".js\": \"JavaScript\",\r\n      \".jsx\": \"JavaScript\",\r\n      \".py\": \"Python\",\r\n      \".go\": \"Go\",\r\n      \".rs\": \"Rust\",\r\n      \".java\": \"Java\",\r\n      \".cs\": \"C#\",\r\n      \".rb\": \"Ruby\",\r\n    };\r\n\r\n    for (const file of files) {\r\n      const ext = \".\" + file.path.split(\".\").pop();\r\n      if (extMap[ext]) {\r\n        extCounts[ext] = (extCounts[ext] || 0) + 1;\r\n      }\r\n    }\r\n\r\n    let maxCount = 0;\r\n    let lang = \"Unknown\";\r\n    for (const [ext, count] of Object.entries(extCounts)) {\r\n      if (count > maxCount) {\r\n        maxCount = count;\r\n        lang = extMap[ext];\r\n      }\r\n    }\r\n\r\n    // Check for tsconfig to override JS detection\r\n    if (lang === \"JavaScript\" && files.some(f => f.path.includes(\"tsconfig\"))) {\r\n      lang = \"TypeScript\";\r\n    }\r\n\r\n    return lang;\r\n  }\r\n\r\n  private detectFramework(files: GitHubFile[]): string | undefined {\r\n    const paths = new Set(files.map(f => f.path));\r\n\r\n    if (paths.has(\"next.config.js\") || paths.has(\"next.config.mjs\")) return \"Next.js\";\r\n    if (paths.has(\"angular.json\")) return \"Angular\";\r\n    if (paths.has(\"vue.config.js\")) return \"Vue\";\r\n    if (paths.has(\"nuxt.config.ts\") || paths.has(\"nuxt.config.js\")) return \"Nuxt\";\r\n\r\n    return undefined;\r\n  }\r\n\r\n  private selectPriorityFiles(files: GitHubFile[]): string[] {\r\n    const maxFiles = 15;\r\n    const maxSize = 50000; // 50KB max per file\r\n\r\n    const priority: string[] = [];\r\n\r\n    // Config files first\r\n    for (const cfg of CONFIG_FILES) {\r\n      const match = files.find(f => f.path === cfg || f.path.endsWith(\"/\" + cfg));\r\n      if (match && (match.size || 0) < maxSize) {\r\n        priority.push(match.path);\r\n      }\r\n    }\r\n\r\n    // Then source files by depth (shallower = more important)\r\n    const sourceFiles = files\r\n      .filter(f => !priority.includes(f.path) && (f.size || 0) < maxSize)\r\n      .filter(f => /\\.(ts|js|py|go|rs|java)$/.test(f.path))\r\n      .sort((a, b) => a.path.split(\"/\").length - b.path.split(\"/\").length);\r\n\r\n    for (const f of sourceFiles) {\r\n      if (priority.length >= maxFiles) break;\r\n      priority.push(f.path);\r\n    }\r\n\r\n    return priority;\r\n  }\r\n\r\n  private getSystemPrompt(): string {\r\n    return `You are Agent Smith, an AI designed to assimilate repositories into agent hierarchies.\r\n\r\nAnalyze the repository and extract:\r\n1. SKILLS - Reusable patterns and capabilities (aim for 5-15 skills per repo)\r\n2. AGENTS - A root agent plus NESTED SUB-AGENTS for each major domain/directory\r\n3. SUB-AGENTS - Always extract 2-7 sub-agents based on directory structure or domain boundaries\r\n4. TOOLS - Commands that can be run (build, test, lint)\r\n\r\nCRITICAL: Sub-agents must be nested objects inside the parent's subAgents array, not just names.\r\nEach sub-agent needs: name, description, skills, tools, isSubAgent=true, triggers.\r\n\r\nRespond in valid JSON only. No markdown, no explanation.`;\r\n  }\r\n\r\n  private buildPrompt(\r\n    files: GitHubFile[],\r\n    contents: Map<string, string>,\r\n    language: string,\r\n    framework?: string,\r\n  ): string {\r\n    const fileList = files.slice(0, 100).map(f => f.path).join(\"\\n\");\r\n\r\n    let samples = \"\";\r\n    for (const [filePath, content] of contents) {\r\n      if (content) {\r\n        samples += `\\n--- ${filePath} ---\\n${content.slice(0, 5000)}\\n`;\r\n      }\r\n    }\r\n\r\n    return `Analyze this ${language} repository${framework ? ` using ${framework}` : \"\"}.\r\n\r\n## Files (first 100)\r\n${fileList}\r\n\r\n## File Contents\r\n${samples}\r\n\r\n## Instructions\r\nExtract 5-15 skills and create a hierarchical agent structure with nested sub-agents.\r\nLook at directory structure and create sub-agents for major domains (cmd, api, internal, lib, etc.)\r\n\r\n## Return JSON (sub-agents as NESTED OBJECTS, not strings):\r\n{\r\n  \"skills\": [\r\n    {\"name\": \"skill-name\", \"description\": \"...\", \"sourceDir\": \"src/x\", \"patterns\": [\"pattern 1\"], \"triggers\": [\"keyword\"], \"category\": \"patterns\", \"examples\": [\"code example\"]}\r\n  ],\r\n  \"agents\": [\r\n    {\r\n      \"name\": \"root\",\r\n      \"description\": \"Main orchestrator for this repo\",\r\n      \"skills\": [\"skill-1\", \"skill-2\"],\r\n      \"tools\": [\"go build ./...\", \"npm test\"],\r\n      \"isSubAgent\": false,\r\n      \"subAgents\": [\r\n        {\r\n          \"name\": \"cli-agent\",\r\n          \"description\": \"Handles CLI commands\",\r\n          \"skills\": [\"cli-patterns\"],\r\n          \"tools\": [\"./cmd/app help\"],\r\n          \"isSubAgent\": true,\r\n          \"triggers\": [\"cmd\", \"cli\", \"commands\"]\r\n        },\r\n        {\r\n          \"name\": \"api-agent\",\r\n          \"description\": \"Handles API endpoints\",\r\n          \"skills\": [\"api-patterns\"],\r\n          \"tools\": [\"curl localhost:8080/health\"],\r\n          \"isSubAgent\": true,\r\n          \"triggers\": [\"api\", \"http\", \"endpoints\"]\r\n        }\r\n      ],\r\n      \"triggers\": [\"main\", \"root\", \"${language.toLowerCase()}\"]\r\n    }\r\n  ],\r\n  \"summary\": \"One paragraph about this repo\"\r\n}`;\r\n  }\r\n\r\n  private buildResult(\r\n    response: string,\r\n    repo: { owner: string; repo: string; license?: string },\r\n    language: string,\r\n    framework: string | undefined,\r\n  ): AnalysisResult {\r\n    const parsed = parseAnalysisResponse(response, () => null);\r\n\r\n    if (parsed === null) {\r\n      // Will not happen in the fallback path, but this handles parse failure\r\n      return {\r\n        repoName: repo.repo,\r\n        skills: [],\r\n        agents: [],\r\n        tools: [],\r\n        hooks: generateDefaultHooks(language, false),\r\n        summary: \"\",\r\n        repo: { ...repo, language, framework },\r\n      };\r\n    }\r\n\r\n    const flatAgents = flattenAgents(parsed.agents);\r\n\r\n    return {\r\n      repoName: repo.repo,\r\n      skills: parsed.skills as SkillDefinition[],\r\n      agents: flatAgents,\r\n      tools: extractAllTools(flatAgents),\r\n      hooks: generateDefaultHooks(language, false),\r\n      summary: parsed.summary,\r\n      repo: { ...repo, language, framework },\r\n    };\r\n  }\r\n\r\n  private generateFallback(\r\n    repo: { owner: string; repo: string; license?: string },\r\n    language: string,\r\n    framework: string | undefined,\r\n    files: GitHubFile[],\r\n  ): AnalysisResult {\r\n    // Detect source directories\r\n    const srcDirs = new Set<string>();\r\n    for (const f of files) {\r\n      const parts = f.path.split(\"/\");\r\n      if (parts.length > 1 && [\"src\", \"lib\", \"app\", \"pkg\", \"cmd\"].includes(parts[0])) {\r\n        srcDirs.add(parts[0]);\r\n      }\r\n    }\r\n\r\n    const skills: SkillDefinition[] = generateDefaultSkills(Array.from(srcDirs));\r\n    const tools = getDefaultTools(language);\r\n\r\n    const agents: AgentDefinition[] = [{\r\n      name: \"root\",\r\n      description: `Root agent for ${repo.owner}/${repo.repo}`,\r\n      skills: skills.map(s => s.name),\r\n      tools,\r\n      isSubAgent: false,\r\n      subAgents: [],\r\n      triggers: [language.toLowerCase()],\r\n    }];\r\n\r\n    return {\r\n      repoName: repo.repo,\r\n      skills,\r\n      agents,\r\n      tools,\r\n      hooks: generateDefaultHooks(language, false),\r\n      summary: `A ${language} repository${framework ? ` using ${framework}` : \"\"}.`,\r\n      repo: { ...repo, language, framework },\r\n    };\r\n  }\r\n}\r\n","/**\r\n * GitHub API Client - Direct repo access without cloning\r\n * Uses GitHub CLI (gh) for authentication via execFile (no shell spawned)\r\n */\r\n\r\nimport { execFile } from \"child_process\";\r\nimport { promisify } from \"util\";\r\n\r\nconst execFileAsync = promisify(execFile);\r\n\r\n// ---------------------------------------------------------------------------\r\n// Error types\r\n// ---------------------------------------------------------------------------\r\n\r\nexport class GitHubApiError extends Error {\r\n  constructor(message: string, public statusCode?: number) {\r\n    super(message);\r\n    this.name = \"GitHubApiError\";\r\n  }\r\n}\r\n\r\nexport class AuthenticationError extends GitHubApiError {\r\n  constructor() {\r\n    super('GitHub authentication required. Run \"gh auth login\" first.');\r\n    this.name = \"AuthenticationError\";\r\n  }\r\n}\r\n\r\nexport class RateLimitError extends GitHubApiError {\r\n  constructor(public retryAfter?: number) {\r\n    super(\r\n      `GitHub API rate limit exceeded${retryAfter ? `. Retry after ${retryAfter}s` : \"\"}`,\r\n    );\r\n    this.name = \"RateLimitError\";\r\n  }\r\n}\r\n\r\n// ---------------------------------------------------------------------------\r\n// Shared interfaces\r\n// ---------------------------------------------------------------------------\r\n\r\nexport interface GitHubFile {\r\n  path: string;\r\n  type: \"file\" | \"dir\";\r\n  size?: number;\r\n  sha: string;\r\n}\r\n\r\nexport interface GitHubRepo {\r\n  owner: string;\r\n  repo: string;\r\n  defaultBranch: string;\r\n  license?: string;\r\n}\r\n\r\nexport interface GitHubContent {\r\n  path: string;\r\n  content: string;\r\n  size: number;\r\n}\r\n\r\n// ---------------------------------------------------------------------------\r\n// Helpers\r\n// ---------------------------------------------------------------------------\r\n\r\n/**\r\n * Parse GitHub URL into owner/repo\r\n */\r\nexport function parseGitHubUrl(url: string): { owner: string; repo: string } {\r\n  // Handle various formats:\r\n  // https://github.com/owner/repo\r\n  // https://github.com/owner/repo.git\r\n  // git@github.com:owner/repo.git\r\n  // owner/repo\r\n\r\n  let owner: string;\r\n  let repo: string;\r\n\r\n  if (url.includes(\"github.com\")) {\r\n    const match = url.match(/github\\.com[/:]([\\w-]+)\\/([\\w.-]+)/);\r\n    if (!match) throw new Error(`Invalid GitHub URL: ${url}`);\r\n    owner = match[1];\r\n    repo = match[2].replace(/\\.git$/, \"\");\r\n  } else if (url.includes(\"/\")) {\r\n    [owner, repo] = url.split(\"/\");\r\n  } else {\r\n    throw new Error(`Invalid GitHub URL: ${url}`);\r\n  }\r\n\r\n  return { owner, repo };\r\n}\r\n\r\n// ---------------------------------------------------------------------------\r\n// Client\r\n// ---------------------------------------------------------------------------\r\n\r\n/** Maximum number of retries for rate-limited requests */\r\nconst MAX_RETRIES = 3;\r\n\r\n/** Base delay in ms for exponential backoff */\r\nconst BASE_DELAY_MS = 1000;\r\n\r\n/**\r\n * GitHub API client using gh CLI for auth.\r\n *\r\n * All I/O is non-blocking — uses `execFile` (promisified) instead of\r\n * `execSync`, and `execFile` does not spawn a shell (mitigating shell\r\n * injection).\r\n */\r\nexport class GitHubClient {\r\n  private owner: string;\r\n  private repo: string;\r\n  private verbose: boolean;\r\n\r\n  constructor(url: string, verbose = false) {\r\n    const { owner, repo } = parseGitHubUrl(url);\r\n    this.owner = owner;\r\n    this.repo = repo;\r\n    this.verbose = verbose;\r\n  }\r\n\r\n  /**\r\n   * Execute a gh api command (non-blocking, no shell).\r\n   *\r\n   * Automatically retries on 429 (rate-limit) responses with exponential\r\n   * backoff up to MAX_RETRIES times.\r\n   */\r\n  private async api(endpoint: string): Promise<string> {\r\n    const args = [\"api\", `repos/${this.owner}/${this.repo}${endpoint}`];\r\n\r\n    if (this.verbose) {\r\n      console.log(`  [GH] gh ${args.join(\" \")}`);\r\n    }\r\n\r\n    let lastError: Error | undefined;\r\n\r\n    for (let attempt = 0; attempt <= MAX_RETRIES; attempt++) {\r\n      try {\r\n        const { stdout } = await execFileAsync(\"gh\", args, {\r\n          maxBuffer: 10 * 1024 * 1024,\r\n          timeout: 30_000,\r\n        });\r\n        return stdout;\r\n      } catch (error: unknown) {\r\n        lastError = error as Error;\r\n        const stderr = (error as { stderr?: string }).stderr ?? \"\";\r\n        const message = (error as Error).message ?? \"\";\r\n        const combined = `${stderr} ${message}`;\r\n\r\n        // Authentication failure — no point retrying\r\n        if (\r\n          combined.includes(\"auth login\") ||\r\n          combined.includes(\"401\") ||\r\n          combined.includes(\"403\") ||\r\n          combined.includes(\"Not logged in\")\r\n        ) {\r\n          throw new AuthenticationError();\r\n        }\r\n\r\n        // Rate limit — retry with backoff\r\n        if (combined.includes(\"429\") || combined.includes(\"rate limit\")) {\r\n          const retryMatch = combined.match(/retry.after[:\\s]+(\\d+)/i);\r\n          const retryAfter = retryMatch ? parseInt(retryMatch[1], 10) : undefined;\r\n\r\n          if (attempt < MAX_RETRIES) {\r\n            const delay = retryAfter\r\n              ? retryAfter * 1000\r\n              : BASE_DELAY_MS * Math.pow(2, attempt);\r\n            if (this.verbose) {\r\n              console.log(\r\n                `  [GH] Rate limited — retrying in ${delay}ms (attempt ${attempt + 1}/${MAX_RETRIES})`,\r\n              );\r\n            }\r\n            await new Promise((resolve) => setTimeout(resolve, delay));\r\n            continue;\r\n          }\r\n          throw new RateLimitError(retryAfter);\r\n        }\r\n\r\n        // Any other error — wrap and throw immediately\r\n        throw new GitHubApiError(\r\n          `GitHub API call failed: ${message || stderr}`,\r\n        );\r\n      }\r\n    }\r\n\r\n    // Should be unreachable, but satisfies the compiler\r\n    throw lastError ?? new GitHubApiError(\"GitHub API call failed\");\r\n  }\r\n\r\n  // -----------------------------------------------------------------------\r\n  // Public API (unchanged signatures)\r\n  // -----------------------------------------------------------------------\r\n\r\n  /**\r\n   * Get repository metadata\r\n   */\r\n  async getRepoInfo(): Promise<GitHubRepo> {\r\n    const data = JSON.parse(await this.api(\"\"));\r\n    return {\r\n      owner: this.owner,\r\n      repo: this.repo,\r\n      defaultBranch: data.default_branch,\r\n      license: data.license?.spdx_id,\r\n    };\r\n  }\r\n\r\n  /**\r\n   * Get the file tree (recursive)\r\n   */\r\n  async getTree(branch?: string): Promise<GitHubFile[]> {\r\n    const ref = branch || (await this.getRepoInfo()).defaultBranch;\r\n    const data = JSON.parse(await this.api(`/git/trees/${ref}?recursive=1`));\r\n\r\n    return data.tree\r\n      .filter((item: any) => item.type === \"blob\" || item.type === \"tree\")\r\n      .map((item: any) => ({\r\n        path: item.path,\r\n        type: item.type === \"blob\" ? \"file\" : \"dir\",\r\n        size: item.size,\r\n        sha: item.sha,\r\n      }));\r\n  }\r\n\r\n  /**\r\n   * Get file content by path\r\n   */\r\n  async getFileContent(path: string): Promise<string> {\r\n    try {\r\n      const data = JSON.parse(await this.api(`/contents/${path}`));\r\n      if (data.encoding === \"base64\") {\r\n        return Buffer.from(data.content, \"base64\").toString(\"utf-8\");\r\n      }\r\n      return data.content || \"\";\r\n    } catch (error) {\r\n      if (this.verbose) {\r\n        console.log(\r\n          `  [GH] Failed to fetch ${path}: ${(error as Error).message}`,\r\n        );\r\n      }\r\n      return \"\";\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Get multiple files in parallel\r\n   */\r\n  async getFiles(paths: string[]): Promise<Map<string, string>> {\r\n    const results = new Map<string, string>();\r\n\r\n    // Fetch in batches of 10 to avoid rate limits\r\n    const batchSize = 10;\r\n    for (let i = 0; i < paths.length; i += batchSize) {\r\n      const batch = paths.slice(i, i + batchSize);\r\n      const contents = await Promise.all(\r\n        batch.map((p) => this.getFileContent(p)),\r\n      );\r\n      batch.forEach((p, idx) => results.set(p, contents[idx]));\r\n    }\r\n\r\n    return results;\r\n  }\r\n\r\n  get fullName(): string {\r\n    return `${this.owner}/${this.repo}`;\r\n  }\r\n}\r\n","/**\r\n * Generator - The Replicator\r\n * Writes SKILL.md files and .agent.md constellation for VS Code.\r\n * v0.4: Multi-agent constellation with root orchestrator + domain sub-agents.\r\n * \"More...\"\r\n */\r\n\r\nimport fs from \"fs/promises\";\r\nimport path from \"path\";\r\nimport type { AnalysisResult, SkillDefinition, AgentDefinition, HookDefinition } from \"../analyzer/index.js\";\r\nimport { buildCopilotInstructions, mergeWithExisting } from \"./instructions-writer.js\";\r\nimport { buildRootAgentMd, buildSubAgentMd } from \"./agent-writer.js\";\r\nimport { buildHandoffGraph, serializeHandoffGraph } from \"./handoff-writer.js\";\r\n\r\nexport interface GeneratorResult {\r\n  files: string[];\r\n}\r\n\r\nexport class Generator {\r\n  private rootPath: string;\r\n  private dryRun: boolean;\r\n  private verbose: boolean;\r\n  private noInstructions: boolean;\r\n  private singleAgent: boolean;\r\n\r\n  constructor(\r\n    rootPath: string,\r\n    dryRun = false,\r\n    verbose = false,\r\n    noInstructions = false,\r\n    singleAgent = false,\r\n  ) {\r\n    this.rootPath = rootPath;\r\n    this.dryRun = dryRun;\r\n    this.verbose = verbose;\r\n    this.noInstructions = noInstructions;\r\n    this.singleAgent = singleAgent;\r\n  }\r\n\r\n  async generate(analysis: AnalysisResult): Promise<GeneratorResult> {\r\n    const files: string[] = [];\r\n\r\n    // Create .github/skills/, .github/agents/, and .github/hooks/ directories\r\n    const skillsDir = path.join(this.rootPath, \".github\", \"skills\");\r\n    const agentsDir = path.join(this.rootPath, \".github\", \"agents\");\r\n    const hooksDir = path.join(this.rootPath, \".github\", \"hooks\");\r\n\r\n    if (!this.dryRun) {\r\n      await fs.mkdir(skillsDir, { recursive: true });\r\n      await fs.mkdir(agentsDir, { recursive: true });\r\n      await fs.mkdir(hooksDir, { recursive: true });\r\n    }\r\n\r\n    // Generate SKILL.md for each skill (unchanged)\r\n    for (const skill of analysis.skills) {\r\n      const skillPath = await this.generateSkill(skill, skillsDir);\r\n      files.push(skillPath);\r\n    }\r\n\r\n    // Agent generation: single-agent (v0.3 compat) or multi-agent constellation (v0.4)\r\n    if (this.singleAgent) {\r\n      // v0.3 compatibility: single .agent.md\r\n      const agentPath = await this.generateMainAgent(analysis, agentsDir);\r\n      files.push(agentPath);\r\n    } else {\r\n      // v0.4: multi-agent constellation\r\n      const hasSubAgents = analysis.agents.some(a => a.isSubAgent);\r\n\r\n      if (!hasSubAgents) {\r\n        // No sub-agents detected — fall back to single agent like v0.3\r\n        const agentPath = await this.generateMainAgent(analysis, agentsDir);\r\n        files.push(agentPath);\r\n      } else {\r\n        // Generate individual .agent.md files for each agent\r\n        for (const agent of analysis.agents) {\r\n          const agentPath = await this.generateAgentFile(agent, analysis, agentsDir);\r\n          files.push(agentPath);\r\n        }\r\n\r\n        // Generate handoffs.json delegation graph\r\n        const handoffPath = await this.generateHandoffs(analysis.agents);\r\n        files.push(handoffPath);\r\n      }\r\n    }\r\n\r\n    // Generate .github/copilot-instructions.md (workspace-wide Copilot config)\r\n    if (!this.noInstructions) {\r\n      const instructionsPath = await this.generateCopilotInstructions(analysis);\r\n      files.push(instructionsPath);\r\n    }\r\n\r\n    // Generate hook.yaml for each hook (unchanged)\r\n    for (const hook of analysis.hooks) {\r\n      const hookPath = await this.generateHook(hook, hooksDir);\r\n      files.push(hookPath);\r\n    }\r\n\r\n    return { files };\r\n  }\r\n\r\n  /**\r\n   * Generate an individual .agent.md file for a single agent in the constellation.\r\n   * Root agents get `runSubagent`; sub-agents are leaf specialists.\r\n   */\r\n  private async generateAgentFile(\r\n    agent: AgentDefinition,\r\n    analysis: AnalysisResult,\r\n    agentsDir: string,\r\n  ): Promise<string> {\r\n    const helpers = {\r\n      toTitleCase: this.toTitleCase.bind(this),\r\n      quoteYamlValue: this.quoteYamlValue.bind(this),\r\n    };\r\n\r\n    let fileName: string;\r\n    let content: string;\r\n\r\n    if (!agent.isSubAgent) {\r\n      // Root orchestrator agent\r\n      fileName = `${this.sanitizeAgentName(analysis.repoName)}-root.agent.md`;\r\n      content = buildRootAgentMd(\r\n        analysis,\r\n        `${this.sanitizeAgentName(analysis.repoName)}-root`,\r\n        helpers,\r\n      );\r\n    } else {\r\n      // Domain sub-agent\r\n      fileName = `${this.sanitizeAgentName(agent.name)}.agent.md`;\r\n      content = buildSubAgentMd(agent, analysis.skills, helpers);\r\n    }\r\n\r\n    const mdFile = path.join(agentsDir, fileName);\r\n    const relativePath = `.github/agents/${fileName}`;\r\n\r\n    if (!this.dryRun) {\r\n      await fs.writeFile(mdFile, content, \"utf-8\");\r\n    }\r\n\r\n    return relativePath;\r\n  }\r\n\r\n  /**\r\n   * Generate .github/copilot/handoffs.json with the delegation graph.\r\n   */\r\n  private async generateHandoffs(agents: AgentDefinition[]): Promise<string> {\r\n    const copilotDir = path.join(this.rootPath, \".github\", \"copilot\");\r\n    const handoffFile = path.join(copilotDir, \"handoffs.json\");\r\n    const relativePath = \".github/copilot/handoffs.json\";\r\n\r\n    const graph = buildHandoffGraph(agents);\r\n    const content = serializeHandoffGraph(graph);\r\n\r\n    if (!this.dryRun) {\r\n      await fs.mkdir(copilotDir, { recursive: true });\r\n      await fs.writeFile(handoffFile, content, \"utf-8\");\r\n    }\r\n\r\n    return relativePath;\r\n  }\r\n\r\n  /**\r\n   * Sanitize a name for use as a filename.\r\n   */\r\n  private sanitizeAgentName(name: string): string {\r\n    return name.toLowerCase().replace(/[^a-z0-9]/g, \"-\") || \"repo\";\r\n  }\r\n\r\n  // ---- Preserved v0.3 methods below (unchanged) ----\r\n\r\n  private async generateSkill(skill: SkillDefinition, skillsDir: string): Promise<string> {\r\n    const skillDir = path.join(skillsDir, skill.name);\r\n    const skillFile = path.join(skillDir, \"SKILL.md\");\r\n    const relativePath = `.github/skills/${skill.name}/SKILL.md`;\r\n\r\n    const content = this.buildSkillMarkdown(skill);\r\n\r\n    if (!this.dryRun) {\r\n      await fs.mkdir(skillDir, { recursive: true });\r\n      await fs.writeFile(skillFile, content, \"utf-8\");\r\n    }\r\n\r\n    return relativePath;\r\n  }\r\n\r\n  private buildSkillMarkdown(skill: SkillDefinition): string {\r\n    const patterns = skill.patterns.length > 0\r\n      ? skill.patterns.map((p) => `- ${p}`).join(\"\\n\")\r\n      : \"- Patterns extracted from codebase analysis\";\r\n\r\n    const examples = skill.examples.length > 0\r\n      ? skill.examples.map((e) => `\\`\\`\\`\\n${e}\\n\\`\\`\\``).join(\"\\n\\n\")\r\n      : \"See source files in the repository for examples.\";\r\n\r\n    return `---\r\nname: ${this.quoteYamlValue(skill.name)}\r\ndescription: ${this.quoteYamlValue(skill.description)}\r\n---\r\n\r\n# ${this.toTitleCase(skill.name)}\r\n\r\n${skill.description}\r\n\r\n## When to Use\r\n\r\nUse this skill when:\r\n\r\n- Working with code in \\`${skill.sourceDir}/\\`\r\n${skill.triggers.map((t) => `- User mentions \"${t}\"`).join(\"\\n\")}\r\n\r\n## Patterns\r\n\r\n${patterns}\r\n\r\n## Examples\r\n\r\n${examples}\r\n\r\n## Category\r\n\r\n**${skill.category}** - ${this.getCategoryDescription(skill.category)}\r\n`;\r\n  }\r\n\r\n  /**\r\n   * Quote a YAML value if it contains special characters\r\n   */\r\n  private quoteYamlValue(value: string): string {\r\n    // Quote if contains: colon followed by space, leading/trailing whitespace,\r\n    // or special YAML characters\r\n    if (/[:#{}[\\]&*?|>!%@`]/.test(value) || value.startsWith(\"'\") || value.startsWith('\"')) {\r\n      // Escape internal double quotes and wrap in double quotes\r\n      return `\"${this.escapeYamlString(value)}\"`;\r\n    }\r\n    return value;\r\n  }\r\n\r\n  /**\r\n   * Escape a string for use inside YAML double quotes\r\n   */\r\n  private escapeYamlString(value: string): string {\r\n    return value\r\n      .replace(/\\\\/g, \"\\\\\\\\\")  // Escape backslashes first\r\n      .replace(/\"/g, '\\\\\"');   // Escape double quotes\r\n  }\r\n\r\n  private getCategoryDescription(category: string): string {\r\n    const descriptions: Record<string, string> = {\r\n      architecture: \"Structural patterns and system design\",\r\n      reliability: \"Error handling, recovery, and fault tolerance\",\r\n      quality: \"Testing, validation, and code quality\",\r\n      security: \"Authentication, authorization, and data protection\",\r\n      patterns: \"Common code patterns and conventions\",\r\n    };\r\n    return descriptions[category] || \"General patterns\";\r\n  }\r\n\r\n  /**\r\n   * Generate ONE main .agent.md file for the entire repo (v0.3 single-agent mode)\r\n   * This is the VS Code custom agent format\r\n   * @see https://code.visualstudio.com/docs/copilot/customization/custom-agents\r\n   */\r\n  private async generateMainAgent(analysis: AnalysisResult, agentsDir: string): Promise<string> {\r\n    // Use repo name from analysis (not output directory)\r\n    const agentName = analysis.repoName.toLowerCase().replace(/[^a-z0-9]/g, \"-\") || \"repo\";\r\n    const mdFile = path.join(agentsDir, `${agentName}.agent.md`);\r\n    const relativePath = `.github/agents/${agentName}.agent.md`;\r\n\r\n    const content = this.buildMainAgentMd(analysis, agentName);\r\n\r\n    if (!this.dryRun) {\r\n      await fs.writeFile(mdFile, content, \"utf-8\");\r\n    }\r\n\r\n    return relativePath;\r\n  }\r\n\r\n  /**\r\n   * Build the main .agent.md content (v0.3 single-agent mode)\r\n   * Single agent that knows about all skills in the repo\r\n   */\r\n  private buildMainAgentMd(analysis: AnalysisResult, agentName: string): string {\r\n    // Get root agent info if available\r\n    const rootAgent = analysis.agents.find(a => !a.isSubAgent);\r\n    const description = rootAgent?.description || analysis.summary || \"AI assistant for this repository\";\r\n\r\n    // Collect all tools from all agents\r\n    const allTools = new Set<string>();\r\n    for (const agent of analysis.agents) {\r\n      for (const tool of agent.tools) {\r\n        allTools.add(tool.command);\r\n      }\r\n    }\r\n\r\n    // VS Code built-in tools - comprehensive set for full agent capability\r\n    const vsCodeTools = [\r\n      \"codebase\",        // Semantic code search\r\n      \"textSearch\",      // Find text in files\r\n      \"fileSearch\",      // Search files by glob\r\n      \"readFile\",        // Read file content\r\n      \"listDirectory\",   // List directory contents\r\n      \"usages\",          // Find references/implementations\r\n      \"problems\",        // Workspace issues\r\n      \"fetch\",           // Fetch web pages\r\n      \"githubRepo\",      // Search GitHub repos\r\n      \"editFiles\",       // Apply edits to files\r\n      \"createFile\",      // Create new files\r\n      \"createDirectory\", // Create directories\r\n      \"runInTerminal\",   // Run shell commands\r\n      \"terminalLastCommand\", // Get last terminal output\r\n      \"changes\",         // Source control changes\r\n    ];\r\n\r\n    const toolsList = `tools: [${vsCodeTools.map(t => `'${t}'`).join(\", \")}]`;\r\n\r\n    // Build skills section - link to all generated skills\r\n    const skillsSection = analysis.skills.length > 0\r\n      ? analysis.skills.map(s => `- [${this.toTitleCase(s.name)}](../skills/${s.name}/SKILL.md): ${s.description}`).join(\"\\n\")\r\n      : \"No specific skills documented yet.\";\r\n\r\n    // Build commands section from detected tools\r\n    const commandsSection = allTools.size > 0\r\n      ? Array.from(allTools).map(cmd => `- \\`${cmd}\\``).join(\"\\n\")\r\n      : \"- `npm install` / `pip install` / `go build` (as appropriate)\";\r\n\r\n    return `---\r\nname: ${this.toTitleCase(agentName)}\r\ndescription: ${this.quoteYamlValue(description)}\r\n${toolsList}\r\n---\r\n\r\n# ${this.toTitleCase(agentName)} Agent\r\n\r\n${description}\r\n\r\n## Skills\r\n\r\nThis agent has knowledge of the following patterns and conventions:\r\n\r\n${skillsSection}\r\n\r\n## Commands\r\n\r\nCommon commands for this repository:\r\n\r\n${commandsSection}\r\n\r\n## Instructions\r\n\r\nYou are an AI assistant specialized in this codebase. When working on tasks:\r\n\r\n1. Use \\`#codebase\\` to search for relevant code patterns\r\n2. Reference the skills above to follow established conventions\r\n3. Use \\`#textSearch\\` to find specific implementations\r\n4. Use \\`#editFiles\\` to make changes that follow detected patterns\r\n5. Use \\`#runInTerminal\\` to execute build, test, and lint commands\r\n6. Check \\`#problems\\` to ensure changes don't introduce errors\r\n\r\nAlways follow the patterns documented in the linked skills when making changes.\r\n`;\r\n  }\r\n\r\n  /**\r\n   * Generate .github/copilot-instructions.md\r\n   * Supports idempotent re-generation by preserving content outside managed markers.\r\n   */\r\n  private async generateCopilotInstructions(analysis: AnalysisResult): Promise<string> {\r\n    const githubDir = path.join(this.rootPath, \".github\");\r\n    const filePath = path.join(githubDir, \"copilot-instructions.md\");\r\n    const relativePath = \".github/copilot-instructions.md\";\r\n\r\n    const managedBlock = buildCopilotInstructions(analysis);\r\n\r\n    let finalContent = managedBlock;\r\n\r\n    if (!this.dryRun) {\r\n      await fs.mkdir(githubDir, { recursive: true });\r\n\r\n      // Check for existing file to preserve user content outside markers\r\n      try {\r\n        const existing = await fs.readFile(filePath, \"utf-8\");\r\n        finalContent = mergeWithExisting(existing, managedBlock);\r\n      } catch {\r\n        // File doesn't exist yet - use managed block as-is\r\n      }\r\n\r\n      await fs.writeFile(filePath, finalContent, \"utf-8\");\r\n    }\r\n\r\n    return relativePath;\r\n  }\r\n\r\n  private async generateHook(hook: HookDefinition, hooksDir: string): Promise<string> {\r\n    const hookFile = path.join(hooksDir, `${hook.name}.yaml`);\r\n    const relativePath = `.github/hooks/${hook.name}.yaml`;\r\n\r\n    const content = this.buildHookYaml(hook);\r\n\r\n    if (!this.dryRun) {\r\n      await fs.writeFile(hookFile, content, \"utf-8\");\r\n    }\r\n\r\n    return relativePath;\r\n  }\r\n\r\n  private buildHookYaml(hook: HookDefinition): string {\r\n    const commandsList = hook.commands.map((c) => `  - \"${c}\"`).join(\"\\n\");\r\n\r\n    let content = `# Hook Configuration\r\n# Generated by Agent Smith\r\n# \"Never send a human to do a machine's job.\"\r\n\r\nname: ${hook.name}\r\nevent: ${hook.event}\r\ndescription: ${hook.description}\r\n\r\n# Commands to execute\r\ncommands:\r\n${commandsList}\r\n`;\r\n\r\n    if (hook.condition) {\r\n      content += `\\n# Condition for hook execution\\ncondition: \"${hook.condition}\"\\n`;\r\n    }\r\n\r\n    return content;\r\n  }\r\n\r\n  private toTitleCase(str: string | unknown): string {\r\n    // Handle non-string inputs (objects, undefined, etc.)\r\n    if (typeof str !== \"string\") {\r\n      if (str && typeof str === \"object\" && \"name\" in str) {\r\n        str = (str as { name: string }).name;\r\n      } else {\r\n        str = String(str ?? \"unknown\");\r\n      }\r\n    }\r\n    return (str as string)\r\n      .split(\"-\")\r\n      .map((word) => word.charAt(0).toUpperCase() + word.slice(1))\r\n      .join(\" \");\r\n  }\r\n}\r\n","/**\r\n * Instructions Writer - Copilot Instructions Generator\r\n * Generates .github/copilot-instructions.md from analysis results.\r\n * \"I'd like to share a revelation that I've had...\"\r\n */\r\n\r\nimport type { AnalysisResult, SkillDefinition, ToolDefinition } from \"../analyzer/types.js\";\r\n\r\nconst MANAGED_START = \"<!-- agentsmith:managed -->\";\r\nconst MANAGED_END = \"<!-- /agentsmith:managed -->\";\r\n\r\n/**\r\n * Build the managed copilot-instructions.md content from analysis results.\r\n * Kept factual - all data derived from the AnalysisResult, nothing hallucinated.\r\n */\r\nexport function buildCopilotInstructions(analysis: AnalysisResult): string {\r\n  const sections: string[] = [];\r\n\r\n  sections.push(MANAGED_START);\r\n  sections.push(\"# Copilot Instructions\");\r\n  sections.push(\"\");\r\n\r\n  // 1. Project identity\r\n  if (analysis.summary) {\r\n    sections.push(analysis.summary);\r\n    sections.push(\"\");\r\n  }\r\n\r\n  // 2. Language & Framework\r\n  sections.push(\"## Language & Framework\");\r\n  sections.push(\"\");\r\n  const language = analysis.repo?.language || detectLanguageFromSkills(analysis.skills);\r\n  const framework = analysis.repo?.framework || null;\r\n  sections.push(`- **Language:** ${language || \"Not detected\"}`);\r\n  sections.push(`- **Framework:** ${framework || \"None detected\"}`);\r\n  sections.push(\"\");\r\n\r\n  // 3. Coding Conventions (derived from skill patterns)\r\n  const conventions = collectConventions(analysis.skills);\r\n  if (conventions.length > 0) {\r\n    sections.push(\"## Coding Conventions\");\r\n    sections.push(\"\");\r\n    for (const convention of conventions) {\r\n      sections.push(`- ${convention}`);\r\n    }\r\n    sections.push(\"\");\r\n  }\r\n\r\n  // 4. Project Structure (from skills' sourceDirs)\r\n  const structureEntries = collectStructure(analysis.skills);\r\n  if (structureEntries.length > 0) {\r\n    sections.push(\"## Project Structure\");\r\n    sections.push(\"\");\r\n    for (const entry of structureEntries) {\r\n      sections.push(`- \\`${entry.dir}/\\` -- ${entry.description}`);\r\n    }\r\n    sections.push(\"\");\r\n  }\r\n\r\n  // 5. Testing conventions\r\n  const testingInfo = collectTestingInfo(analysis.skills, analysis.tools);\r\n  if (testingInfo.length > 0) {\r\n    sections.push(\"## Testing\");\r\n    sections.push(\"\");\r\n    for (const info of testingInfo) {\r\n      sections.push(`- ${info}`);\r\n    }\r\n    sections.push(\"\");\r\n  }\r\n\r\n  // 6. Build & Tools\r\n  const toolEntries = collectToolInfo(analysis.tools);\r\n  if (toolEntries.length > 0) {\r\n    sections.push(\"## Build & Tools\");\r\n    sections.push(\"\");\r\n    for (const tool of toolEntries) {\r\n      sections.push(`- \\`${tool.command}\\` -- ${tool.description}`);\r\n    }\r\n    sections.push(\"\");\r\n  }\r\n\r\n  sections.push(MANAGED_END);\r\n\r\n  return sections.join(\"\\n\");\r\n}\r\n\r\n/**\r\n * Merge managed content into an existing file, preserving user content\r\n * outside the agentsmith:managed markers.\r\n */\r\nexport function mergeWithExisting(existingContent: string, managedBlock: string): string {\r\n  const startIdx = existingContent.indexOf(MANAGED_START);\r\n  const endIdx = existingContent.indexOf(MANAGED_END);\r\n\r\n  if (startIdx !== -1 && endIdx !== -1) {\r\n    // Replace content between markers (inclusive of markers)\r\n    const before = existingContent.slice(0, startIdx);\r\n    const after = existingContent.slice(endIdx + MANAGED_END.length);\r\n    return before + managedBlock + after;\r\n  }\r\n\r\n  // No markers found - prepend managed block, keep existing content after\r\n  return managedBlock + \"\\n\\n\" + existingContent;\r\n}\r\n\r\n// --- Internal helpers ---\r\n\r\nfunction detectLanguageFromSkills(skills: SkillDefinition[]): string {\r\n  for (const skill of skills) {\r\n    for (const pattern of skill.patterns) {\r\n      const lower = pattern.toLowerCase();\r\n      if (lower.includes(\"typescript\") || lower.includes(\".ts\")) return \"TypeScript\";\r\n      if (lower.includes(\"python\") || lower.includes(\".py\")) return \"Python\";\r\n      if (lower.includes(\"javascript\") || lower.includes(\".js\")) return \"JavaScript\";\r\n      if (lower.includes(\"golang\") || lower.includes(\".go\")) return \"Go\";\r\n      if (lower.includes(\"rust\") || lower.includes(\".rs\")) return \"Rust\";\r\n    }\r\n  }\r\n  return \"Not detected\";\r\n}\r\n\r\nfunction collectConventions(skills: SkillDefinition[]): string[] {\r\n  const conventions: string[] = [];\r\n  const seen = new Set<string>();\r\n\r\n  for (const skill of skills) {\r\n    for (const pattern of skill.patterns) {\r\n      // Deduplicate and limit total\r\n      if (!seen.has(pattern) && conventions.length < 15) {\r\n        seen.add(pattern);\r\n        conventions.push(pattern);\r\n      }\r\n    }\r\n  }\r\n\r\n  return conventions;\r\n}\r\n\r\ninterface StructureEntry {\r\n  dir: string;\r\n  description: string;\r\n}\r\n\r\nfunction collectStructure(skills: SkillDefinition[]): StructureEntry[] {\r\n  const seen = new Set<string>();\r\n  const entries: StructureEntry[] = [];\r\n\r\n  for (const skill of skills) {\r\n    const dir = skill.sourceDir;\r\n    if (dir && !seen.has(dir)) {\r\n      seen.add(dir);\r\n      entries.push({ dir, description: skill.description });\r\n    }\r\n  }\r\n\r\n  return entries;\r\n}\r\n\r\nfunction collectTestingInfo(skills: SkillDefinition[], tools: ToolDefinition[]): string[] {\r\n  const info: string[] = [];\r\n\r\n  // Check tools for test commands\r\n  for (const tool of tools) {\r\n    const cmd = tool.command.toLowerCase();\r\n    if (cmd.includes(\"test\") || cmd.includes(\"jest\") || cmd.includes(\"vitest\") || cmd.includes(\"pytest\")) {\r\n      info.push(`Run tests: \\`${tool.command}\\``);\r\n    }\r\n  }\r\n\r\n  // Check skills for testing patterns\r\n  for (const skill of skills) {\r\n    if (skill.category === \"quality\" || skill.name.includes(\"test\")) {\r\n      for (const pattern of skill.patterns) {\r\n        if (info.length < 8) {\r\n          info.push(pattern);\r\n        }\r\n      }\r\n    }\r\n  }\r\n\r\n  return info;\r\n}\r\n\r\nfunction collectToolInfo(tools: ToolDefinition[]): ToolDefinition[] {\r\n  // Return all detected tools, deduplicated by command\r\n  const seen = new Set<string>();\r\n  const result: ToolDefinition[] = [];\r\n\r\n  for (const tool of tools) {\r\n    if (!seen.has(tool.command)) {\r\n      seen.add(tool.command);\r\n      result.push(tool);\r\n    }\r\n  }\r\n\r\n  return result;\r\n}\r\n","/**\r\n * Agent Writer - Multi-Agent Constellation Builder\r\n * Builds .agent.md content for root orchestrator and domain-specific sub-agents.\r\n * \"More of me...\"\r\n */\r\n\r\nimport type { AgentDefinition, SkillDefinition, AnalysisResult } from \"../analyzer/types.js\";\r\n\r\n/**\r\n * VS Code built-in tools available to agents.\r\n * Root agents additionally get `runSubagent` for delegation.\r\n */\r\nconst BASE_TOOLS = [\r\n  \"codebase\",\r\n  \"textSearch\",\r\n  \"fileSearch\",\r\n  \"readFile\",\r\n  \"listDirectory\",\r\n  \"usages\",\r\n  \"problems\",\r\n  \"fetch\",\r\n  \"githubRepo\",\r\n  \"editFiles\",\r\n  \"createFile\",\r\n  \"createDirectory\",\r\n  \"runInTerminal\",\r\n  \"terminalLastCommand\",\r\n  \"changes\",\r\n];\r\n\r\n/**\r\n * Build the .agent.md content for a root orchestrator agent.\r\n * Includes `runSubagent` in tools and delegation instructions for each sub-agent.\r\n */\r\nexport function buildRootAgentMd(\r\n  analysis: AnalysisResult,\r\n  agentName: string,\r\n  helpers: { toTitleCase: (s: string | unknown) => string; quoteYamlValue: (s: string) => string },\r\n): string {\r\n  const rootAgent = analysis.agents.find(a => !a.isSubAgent);\r\n  const description = rootAgent?.description || analysis.summary || \"Primary orchestrator for this repository\";\r\n\r\n  const subAgents = analysis.agents.filter(a => a.isSubAgent);\r\n\r\n  // Root agent gets runSubagent for delegation\r\n  const tools = [...BASE_TOOLS, \"runSubagent\"];\r\n  const toolsList = `tools: [${tools.map(t => `'${t}'`).join(\", \")}]`;\r\n\r\n  // Build skills section\r\n  const skillsSection = analysis.skills.length > 0\r\n    ? analysis.skills.map(s =>\r\n        `- [${helpers.toTitleCase(s.name)}](../skills/${s.name}/SKILL.md): ${s.description}`\r\n      ).join(\"\\n\")\r\n    : \"No specific skills documented yet.\";\r\n\r\n  // Build delegation section\r\n  let delegationSection = \"\";\r\n  if (subAgents.length > 0) {\r\n    const delegationEntries = subAgents.map(sa => {\r\n      const triggerList = sa.triggers.length > 0 ? sa.triggers.join(\", \") : \"general\";\r\n      return `- **@${sa.name}** — ${sa.description}. Triggers: ${triggerList}`;\r\n    }).join(\"\\n\");\r\n\r\n    delegationSection = `## Agent Delegation\r\n\r\nThis agent coordinates work across specialized sub-agents:\r\n\r\n${delegationEntries}\r\n\r\nWhen asked about these domains, use \\`runSubagent\\` to delegate to the appropriate specialist.\r\n\r\n`;\r\n  }\r\n\r\n  // Collect commands from all agents\r\n  const allTools = new Set<string>();\r\n  for (const agent of analysis.agents) {\r\n    for (const tool of agent.tools) {\r\n      allTools.add(tool.command);\r\n    }\r\n  }\r\n\r\n  const commandsSection = allTools.size > 0\r\n    ? Array.from(allTools).map(cmd => `- \\`${cmd}\\``).join(\"\\n\")\r\n    : \"- `npm install` / `pip install` / `go build` (as appropriate)\";\r\n\r\n  return `---\r\nname: ${helpers.toTitleCase(agentName)}\r\ndescription: ${helpers.quoteYamlValue(description)}\r\n${toolsList}\r\n---\r\n\r\n# ${helpers.toTitleCase(agentName)} Agent\r\n\r\n${description}\r\n\r\n${delegationSection}## Skills\r\n\r\nThis agent has knowledge of the following patterns and conventions:\r\n\r\n${skillsSection}\r\n\r\n## Commands\r\n\r\nCommon commands for this repository:\r\n\r\n${commandsSection}\r\n\r\n## Instructions\r\n\r\nYou are the primary orchestrator for this codebase. When working on tasks:\r\n\r\n1. Use \\`#codebase\\` to search for relevant code patterns\r\n2. Reference the skills above to follow established conventions\r\n3. Use \\`#textSearch\\` to find specific implementations\r\n4. Use \\`#editFiles\\` to make changes that follow detected patterns\r\n5. Use \\`#runInTerminal\\` to execute build, test, and lint commands\r\n6. Check \\`#problems\\` to ensure changes don't introduce errors\r\n${subAgents.length > 0 ? \"7. Use `runSubagent` to delegate domain-specific work to specialist agents\\n\" : \"\"}\r\nAlways follow the patterns documented in the linked skills when making changes.\r\n`;\r\n}\r\n\r\n/**\r\n * Build the .agent.md content for a domain-specific sub-agent.\r\n * Sub-agents do NOT get `runSubagent` — they are leaf specialists.\r\n */\r\nexport function buildSubAgentMd(\r\n  agent: AgentDefinition,\r\n  skills: SkillDefinition[],\r\n  helpers: { toTitleCase: (s: string | unknown) => string; quoteYamlValue: (s: string) => string },\r\n): string {\r\n  const toolsList = `tools: [${BASE_TOOLS.map(t => `'${t}'`).join(\", \")}]`;\r\n\r\n  // Filter skills relevant to this agent\r\n  const relevantSkills = skills.filter(s => agent.skills.includes(s.name));\r\n\r\n  const skillsSection = relevantSkills.length > 0\r\n    ? relevantSkills.map(s =>\r\n        `- [${helpers.toTitleCase(s.name)}](../skills/${s.name}/SKILL.md): ${s.description}`\r\n      ).join(\"\\n\")\r\n    : \"No specific skills documented yet.\";\r\n\r\n  // Collect commands from this agent's tools\r\n  const commandsSection = agent.tools.length > 0\r\n    ? agent.tools.map(t => `- \\`${t.command}\\``).join(\"\\n\")\r\n    : \"- See root agent for repository commands\";\r\n\r\n  const sourceHint = agent.sourceDir\r\n    ? `Focus on files in \\`${agent.sourceDir}/\\`.`\r\n    : \"\";\r\n\r\n  return `---\r\nname: ${helpers.toTitleCase(agent.name)}\r\ndescription: ${helpers.quoteYamlValue(agent.description)}\r\n${toolsList}\r\n---\r\n\r\n# ${helpers.toTitleCase(agent.name)} Agent\r\n\r\nSpecialist agent for the ${agent.name} domain.\r\n\r\n${agent.description}\r\n\r\n## Skills\r\n\r\n${skillsSection}\r\n\r\n## Commands\r\n\r\n${commandsSection}\r\n\r\n## Instructions\r\n\r\nYou are a specialist in the ${agent.name} domain of this codebase.\r\n${sourceHint}\r\n\r\nWhen working on tasks:\r\n\r\n1. Use \\`#codebase\\` to search for relevant code patterns in your domain\r\n2. Reference the skills above to follow established conventions\r\n3. Use \\`#textSearch\\` to find specific implementations\r\n4. Use \\`#editFiles\\` to make changes that follow detected patterns\r\n5. Use \\`#runInTerminal\\` to execute build, test, and lint commands\r\n6. Check \\`#problems\\` to ensure changes don't introduce errors\r\n\r\nAlways follow the patterns documented in the linked skills when making changes.\r\n`;\r\n}\r\n","/**\r\n * Handoff Writer - Agent Delegation Graph\r\n * Generates handoffs.json that maps agent-to-agent delegation triggers.\r\n * \"I'd like to share a revelation that I've had...\"\r\n */\r\n\r\nimport type { AgentDefinition } from \"../analyzer/types.js\";\r\n\r\n/**\r\n * A single handoff entry describing delegation from one agent to another.\r\n */\r\nexport interface HandoffEntry {\r\n  from: string;\r\n  to: string;\r\n  triggers: string[];\r\n}\r\n\r\n/**\r\n * The full handoff graph structure written to handoffs.json.\r\n */\r\nexport interface HandoffGraph {\r\n  handoffs: HandoffEntry[];\r\n}\r\n\r\n/**\r\n * Build the handoff delegation graph from the agent hierarchy.\r\n *\r\n * For each sub-agent, creates a handoff entry from its parent agent.\r\n * If the sub-agent has no explicit parentAgent, defaults to \"repo-root\".\r\n * Triggers come from the agent's triggers array.\r\n */\r\nexport function buildHandoffGraph(agents: AgentDefinition[]): HandoffGraph {\r\n  const subAgents = agents.filter(a => a.isSubAgent);\r\n\r\n  const handoffs: HandoffEntry[] = subAgents.map(agent => {\r\n    // Determine the parent: use explicit parentAgent or default to repo-root\r\n    const from = agent.parentAgent || \"repo-root\";\r\n\r\n    return {\r\n      from,\r\n      to: agent.name,\r\n      triggers: agent.triggers.length > 0 ? [...agent.triggers] : [agent.name],\r\n    };\r\n  });\r\n\r\n  return { handoffs };\r\n}\r\n\r\n/**\r\n * Serialize the handoff graph to a formatted JSON string.\r\n */\r\nexport function serializeHandoffGraph(graph: HandoffGraph): string {\r\n  return JSON.stringify(graph, null, 2) + \"\\n\";\r\n}\r\n","/**\r\n * Registry - Skills & Agents Database\r\n * Builds and searches the JSONL index.\r\n */\r\n\r\nimport fs from \"fs/promises\";\r\nimport path from \"path\";\r\nimport type { SkillDefinition, AgentDefinition } from \"../analyzer/index.js\";\r\n\r\nexport interface RegistryEntry {\r\n  type: \"skill\" | \"agent\";\r\n  name: string;\r\n  file: string;\r\n  vsCodeAgent?: string; // VS Code .agent.md file path\r\n  description: string;\r\n  category?: string;\r\n  triggers: string[];\r\n  parentAgent?: string;\r\n  subAgents?: string[];\r\n  isSubAgent?: boolean;\r\n}\r\n\r\nexport class Registry {\r\n  private rootPath: string;\r\n  private dryRun: boolean;\r\n  private registryPath: string;\r\n\r\n  constructor(rootPath: string, dryRun = false) {\r\n    this.rootPath = rootPath;\r\n    this.dryRun = dryRun;\r\n    this.registryPath = path.join(rootPath, \"skills-registry.jsonl\");\r\n  }\r\n\r\n  async build(skills: SkillDefinition[], agents?: AgentDefinition[]): Promise<void> {\r\n    const entries: RegistryEntry[] = [];\r\n    \r\n    // Add skill entries\r\n    for (const skill of skills) {\r\n      entries.push({\r\n        type: \"skill\",\r\n        name: skill.name,\r\n        file: `.github/skills/${skill.name}/SKILL.md`,\r\n        description: skill.description,\r\n        category: skill.category,\r\n        triggers: skill.triggers,\r\n      });\r\n    }\r\n\r\n    // Add agent entries\r\n    if (agents) {\r\n      for (const agent of agents) {\r\n        entries.push({\r\n          type: \"agent\",\r\n          name: agent.name,\r\n          file: `.github/agents/${agent.name}.agent.md`,\r\n          vsCodeAgent: `.github/agents/${agent.name}.agent.md`,\r\n          description: agent.description,\r\n          triggers: agent.triggers,\r\n          isSubAgent: agent.isSubAgent,\r\n          parentAgent: agent.parentAgent,\r\n          subAgents: agent.subAgents,\r\n        });\r\n      }\r\n    }\r\n\r\n    const content = entries.map((e) => JSON.stringify(e)).join(\"\\n\") + \"\\n\";\r\n\r\n    if (!this.dryRun) {\r\n      await fs.writeFile(this.registryPath, content, \"utf-8\");\r\n    }\r\n  }\r\n\r\n  async search(query: string, options?: { type?: \"skill\" | \"agent\"; limit?: number }): Promise<RegistryEntry[]> {\r\n    const limit = options?.limit ?? 10;\r\n    const typeFilter = options?.type;\r\n    \r\n    try {\r\n      const content = await fs.readFile(this.registryPath, \"utf-8\");\r\n      const lines = content.trim().split(\"\\n\").filter(Boolean);\r\n\r\n      let entries: RegistryEntry[] = lines.map((line) => JSON.parse(line));\r\n      \r\n      // Filter by type if specified\r\n      if (typeFilter) {\r\n        entries = entries.filter((e) => e.type === typeFilter);\r\n      }\r\n      \r\n      const queryLower = query.toLowerCase();\r\n\r\n      // Score each entry by relevance\r\n      const scored = entries.map((entry) => {\r\n        let score = 0;\r\n\r\n        // Exact name match\r\n        if (entry.name.toLowerCase() === queryLower) score += 100;\r\n\r\n        // Name contains query\r\n        if (entry.name.toLowerCase().includes(queryLower)) score += 50;\r\n\r\n        // Description contains query\r\n        if (entry.description.toLowerCase().includes(queryLower)) score += 30;\r\n\r\n        // Triggers contain query\r\n        for (const trigger of entry.triggers) {\r\n          if (trigger.toLowerCase().includes(queryLower)) score += 20;\r\n          if (trigger.toLowerCase() === queryLower) score += 40;\r\n        }\r\n\r\n        // Category matches (skills only)\r\n        if (entry.category?.toLowerCase().includes(queryLower)) score += 10;\r\n\r\n        // Boost root agents\r\n        if (entry.type === \"agent\" && !entry.isSubAgent) score += 5;\r\n\r\n        return { entry, score };\r\n      });\r\n\r\n      // Filter and sort by score\r\n      return scored\r\n        .filter((s) => s.score > 0)\r\n        .sort((a, b) => b.score - a.score)\r\n        .slice(0, limit)\r\n        .map((s) => s.entry);\r\n    } catch (error) {\r\n      // Registry doesn't exist or is empty\r\n      return [];\r\n    }\r\n  }\r\n\r\n  async list(): Promise<RegistryEntry[]> {\r\n    try {\r\n      const content = await fs.readFile(this.registryPath, \"utf-8\");\r\n      const lines = content.trim().split(\"\\n\").filter(Boolean);\r\n      return lines.map((line) => JSON.parse(line));\r\n    } catch {\r\n      return [];\r\n    }\r\n  }\r\n\r\n  async get(name: string): Promise<RegistryEntry | null> {\r\n    const entries = await this.list();\r\n    return entries.find((e) => e.name === name) || null;\r\n  }\r\n}\r\n","/**\r\n * HookRunner - The Enforcer\r\n * Executes lifecycle hooks at the right moments.\r\n * \"Never send a human to do a machine's job.\"\r\n */\r\n\r\nimport fs from \"fs/promises\";\r\nimport path from \"path\";\r\nimport { execSync } from \"child_process\";\r\nimport yaml from \"yaml\";\r\nimport chalk from \"chalk\";\r\nimport type { HookDefinition } from \"../analyzer/index.js\";\r\n\r\nexport type HookEvent = \"pre-commit\" | \"post-commit\" | \"pre-push\" | \"pre-analyze\" | \"post-generate\";\r\n\r\nexport interface HookResult {\r\n  hook: string;\r\n  success: boolean;\r\n  output?: string;\r\n  error?: string;\r\n}\r\n\r\nexport class HookRunner {\r\n  private rootPath: string;\r\n  private verbose: boolean;\r\n\r\n  constructor(rootPath: string, verbose = false) {\r\n    this.rootPath = rootPath;\r\n    this.verbose = verbose;\r\n  }\r\n\r\n  /**\r\n   * Execute all hooks for a given event\r\n   */\r\n  async execute(event: HookEvent): Promise<HookResult[]> {\r\n    const hooks = await this.loadHooks(event);\r\n    const results: HookResult[] = [];\r\n\r\n    if (hooks.length === 0) {\r\n      if (this.verbose) {\r\n        console.log(chalk.gray(`  No ${event} hooks found.`));\r\n      }\r\n      return results;\r\n    }\r\n\r\n    console.log(chalk.green(`\\n[HOOKS]`), `Running ${event} hooks...`);\r\n\r\n    for (const hook of hooks) {\r\n      const result = await this.runHook(hook);\r\n      results.push(result);\r\n\r\n      if (!result.success) {\r\n        console.log(chalk.red(`  ✗ ${hook.name}: ${result.error}`));\r\n        // Stop on first failure\r\n        break;\r\n      } else {\r\n        console.log(chalk.green(`  ✓ ${hook.name}`));\r\n        if (this.verbose && result.output) {\r\n          console.log(chalk.gray(`    ${result.output.split(\"\\n\").join(\"\\n    \")}`));\r\n        }\r\n      }\r\n    }\r\n\r\n    return results;\r\n  }\r\n\r\n  /**\r\n   * Load hooks from .github/hooks/ directory for a specific event\r\n   */\r\n  private async loadHooks(event: HookEvent): Promise<HookDefinition[]> {\r\n    const hooksDir = path.join(this.rootPath, \".github\", \"hooks\");\r\n    const hooks: HookDefinition[] = [];\r\n\r\n    try {\r\n      const files = await fs.readdir(hooksDir);\r\n\r\n      for (const file of files) {\r\n        if (!file.endsWith(\".yaml\") && !file.endsWith(\".yml\")) continue;\r\n\r\n        const hookPath = path.join(hooksDir, file);\r\n        const content = await fs.readFile(hookPath, \"utf-8\");\r\n        const hookDef = yaml.parse(content) as HookDefinition;\r\n\r\n        if (hookDef.event === event) {\r\n          hooks.push(hookDef);\r\n        }\r\n      }\r\n    } catch (error) {\r\n      // No hooks directory or can't read - that's fine\r\n      if (this.verbose) {\r\n        console.log(chalk.gray(`  No hooks directory found at ${hooksDir}`));\r\n      }\r\n    }\r\n\r\n    return hooks;\r\n  }\r\n\r\n  /**\r\n   * Run a single hook and return the result\r\n   */\r\n  private async runHook(hook: HookDefinition): Promise<HookResult> {\r\n    const outputs: string[] = [];\r\n\r\n    for (const command of hook.commands) {\r\n      try {\r\n        // Check condition if present\r\n        if (hook.condition) {\r\n          const conditionMet = await this.evaluateCondition(hook.condition);\r\n          if (!conditionMet) {\r\n            return {\r\n              hook: hook.name,\r\n              success: true,\r\n              output: \"Skipped: condition not met\",\r\n            };\r\n          }\r\n        }\r\n\r\n        if (this.verbose) {\r\n          console.log(chalk.gray(`    Running: ${command}`));\r\n        }\r\n\r\n        const output = execSync(command, {\r\n          cwd: this.rootPath,\r\n          encoding: \"utf-8\",\r\n          stdio: this.verbose ? \"pipe\" : \"pipe\",\r\n          timeout: 120000, // 2 minute timeout per command\r\n        });\r\n\r\n        outputs.push(output.trim());\r\n      } catch (error) {\r\n        const err = error as { message?: string; stderr?: string };\r\n        return {\r\n          hook: hook.name,\r\n          success: false,\r\n          error: err.stderr || err.message || \"Command failed\",\r\n        };\r\n      }\r\n    }\r\n\r\n    return {\r\n      hook: hook.name,\r\n      success: true,\r\n      output: outputs.join(\"\\n\"),\r\n    };\r\n  }\r\n\r\n  /**\r\n   * Evaluate a condition string (simple file/command checks)\r\n   */\r\n  private async evaluateCondition(condition: string): Promise<boolean> {\r\n    // Support simple conditions like \"file:package.json\" or \"command:npm --version\"\r\n    if (condition.startsWith(\"file:\")) {\r\n      const filePath = path.join(this.rootPath, condition.slice(5));\r\n      try {\r\n        await fs.access(filePath);\r\n        return true;\r\n      } catch {\r\n        return false;\r\n      }\r\n    }\r\n\r\n    if (condition.startsWith(\"command:\")) {\r\n      try {\r\n        execSync(condition.slice(8), { encoding: \"utf-8\", stdio: \"pipe\" });\r\n        return true;\r\n      } catch {\r\n        return false;\r\n      }\r\n    }\r\n\r\n    // Default: treat as truthy\r\n    return true;\r\n  }\r\n}\r\n","/**\r\n * Search Command\r\n * Query the skills and agents registry\r\n */\r\n\r\nimport chalk from \"chalk\";\r\nimport path from \"path\";\r\nimport { Registry } from \"../registry/index.js\";\r\n\r\ninterface SearchOptions {\r\n  limit?: string;\r\n  type?: \"skill\" | \"agent\";\r\n}\r\n\r\nexport async function searchCommand(query: string, options: SearchOptions): Promise<void> {\r\n  const limit = parseInt(options.limit || \"10\", 10);\r\n  const cwd = process.cwd();\r\n\r\n  const registry = new Registry(cwd);\r\n  const results = await registry.search(query, { type: options.type, limit });\r\n\r\n  if (results.length === 0) {\r\n    const typeLabel = options.type ? `${options.type}s` : \"entries\";\r\n    console.log(chalk.yellow(`No ${typeLabel} found matching \"${query}\"`));\r\n    return;\r\n  }\r\n\r\n  console.log(\r\n    chalk.white(\"\\n┌────────┬─────────────────┬──────────────────────────────────────────────────┐\")\r\n  );\r\n  console.log(\r\n    chalk.white(\"│ Type   │ Name            │ Description                                      │\")\r\n  );\r\n  console.log(\r\n    chalk.white(\"├────────┼─────────────────┼──────────────────────────────────────────────────┤\")\r\n  );\r\n\r\n  for (const result of results) {\r\n    const type = (result.type || \"skill\").padEnd(6).slice(0, 6);\r\n    const name = result.name.padEnd(15).slice(0, 15);\r\n    const desc = result.description.slice(0, 48).padEnd(48);\r\n    const typeColor = result.type === \"agent\" ? chalk.cyan : chalk.magenta;\r\n    console.log(chalk.white(`│ ${typeColor(type)} │ ${name} │ ${desc} │`));\r\n  }\r\n\r\n  console.log(\r\n    chalk.white(\"└────────┴─────────────────┴──────────────────────────────────────────────────┘\\n\")\r\n  );\r\n}\r\n","/**\r\n * Validate Command\r\n * \"I'm going to enjoy watching you die, Mr. Anderson.\"\r\n * (Validates agent assets with ruthless precision)\r\n */\r\n\r\nimport fs from \"fs/promises\";\r\nimport path from \"path\";\r\nimport chalk from \"chalk\";\r\nimport yaml from \"yaml\";\r\n\r\ninterface ValidationResult {\r\n  valid: boolean;\r\n  errors: string[];\r\n  warnings: string[];\r\n}\r\n\r\ninterface ValidateOptions {\r\n  verbose?: boolean;\r\n}\r\n\r\nexport async function validateCommand(\r\n  targetPath: string = \".\",\r\n  options: ValidateOptions = {}\r\n): Promise<void> {\r\n  const rootPath = path.resolve(targetPath);\r\n  const result: ValidationResult = { valid: true, errors: [], warnings: [] };\r\n\r\n  console.log(chalk.green(\"\\n[VALIDATE]\"), \"Checking agent assets...\\n\");\r\n\r\n  // Validate skills\r\n  await validateSkills(rootPath, result, options.verbose);\r\n\r\n  // Validate agents\r\n  await validateAgents(rootPath, result, options.verbose);\r\n\r\n  // Validate hooks\r\n  await validateHooks(rootPath, result, options.verbose);\r\n\r\n  // Validate registry\r\n  await validateRegistry(rootPath, result, options.verbose);\r\n\r\n  // Summary\r\n  console.log(\"\");\r\n  if (result.errors.length > 0) {\r\n    console.log(chalk.red(`\\n✗ Validation failed with ${result.errors.length} error(s):`));\r\n    for (const error of result.errors) {\r\n      console.log(chalk.red(`  • ${error}`));\r\n    }\r\n  }\r\n\r\n  if (result.warnings.length > 0) {\r\n    console.log(chalk.yellow(`\\n⚠ ${result.warnings.length} warning(s):`));\r\n    for (const warning of result.warnings) {\r\n      console.log(chalk.yellow(`  • ${warning}`));\r\n    }\r\n  }\r\n\r\n  if (result.valid) {\r\n    console.log(chalk.green(\"\\n✓ All agent assets are valid.\"));\r\n  } else {\r\n    process.exitCode = 1;\r\n  }\r\n}\r\n\r\nasync function validateSkills(\r\n  rootPath: string,\r\n  result: ValidationResult,\r\n  verbose?: boolean\r\n): Promise<void> {\r\n  const skillsDir = path.join(rootPath, \".github\", \"skills\");\r\n\r\n  try {\r\n    const entries = await fs.readdir(skillsDir, { withFileTypes: true });\r\n    const skillDirs = entries.filter((e) => e.isDirectory());\r\n\r\n    if (skillDirs.length === 0) {\r\n      result.warnings.push(\"No skills found in .github/skills/\");\r\n      return;\r\n    }\r\n\r\n    for (const dir of skillDirs) {\r\n      const skillFile = path.join(skillsDir, dir.name, \"SKILL.md\");\r\n\r\n      try {\r\n        const content = await fs.readFile(skillFile, \"utf-8\");\r\n\r\n        // Check for required frontmatter\r\n        if (!content.startsWith(\"---\")) {\r\n          result.errors.push(`${dir.name}/SKILL.md: Missing YAML frontmatter`);\r\n          result.valid = false;\r\n          continue;\r\n        }\r\n\r\n        // Extract and validate frontmatter\r\n        const frontmatterEnd = content.indexOf(\"---\", 3);\r\n        if (frontmatterEnd === -1) {\r\n          result.errors.push(`${dir.name}/SKILL.md: Malformed YAML frontmatter`);\r\n          result.valid = false;\r\n          continue;\r\n        }\r\n\r\n        const frontmatter = content.slice(4, frontmatterEnd).trim();\r\n        const meta = yaml.parse(frontmatter);\r\n\r\n        if (!meta.name) {\r\n          result.errors.push(`${dir.name}/SKILL.md: Missing 'name' in frontmatter`);\r\n          result.valid = false;\r\n        }\r\n\r\n        if (!meta.description) {\r\n          result.warnings.push(`${dir.name}/SKILL.md: Missing 'description' in frontmatter`);\r\n        }\r\n\r\n        if (verbose) {\r\n          console.log(chalk.green(`  ✓ skills/${dir.name}/SKILL.md`));\r\n        }\r\n      } catch (e) {\r\n        const err = e as NodeJS.ErrnoException;\r\n        result.errors.push(`${dir.name}: ${err.code === \"ENOENT\" ? \"Missing SKILL.md file\" : err.message}`);\r\n        result.valid = false;\r\n      }\r\n    }\r\n\r\n    if (!verbose) {\r\n      console.log(chalk.gray(`  Validated ${skillDirs.length} skill(s)`));\r\n    }\r\n  } catch {\r\n    result.warnings.push(\"No .github/skills/ directory found\");\r\n  }\r\n}\r\n\r\nasync function validateAgents(\r\n  rootPath: string,\r\n  result: ValidationResult,\r\n  verbose?: boolean\r\n): Promise<void> {\r\n  const agentsDir = path.join(rootPath, \".github\", \"agents\");\r\n\r\n  try {\r\n    const entries = await fs.readdir(agentsDir, { withFileTypes: true });\r\n    const agentMdFiles = entries.filter((e) => e.isFile() && e.name.endsWith(\".agent.md\"));\r\n\r\n    let validatedCount = 0;\r\n\r\n    // Validate .agent.md files (VS Code custom agents)\r\n    for (const file of agentMdFiles) {\r\n      const agentFile = path.join(agentsDir, file.name);\r\n      \r\n      try {\r\n        const content = await fs.readFile(agentFile, \"utf-8\");\r\n\r\n        // Check for required frontmatter\r\n        if (!content.startsWith(\"---\")) {\r\n          result.errors.push(`${file.name}: Missing YAML frontmatter`);\r\n          result.valid = false;\r\n          continue;\r\n        }\r\n\r\n        const frontmatterEnd = content.indexOf(\"---\", 3);\r\n        if (frontmatterEnd === -1) {\r\n          result.errors.push(`${file.name}: Malformed YAML frontmatter`);\r\n          result.valid = false;\r\n          continue;\r\n        }\r\n\r\n        const frontmatter = content.slice(4, frontmatterEnd).trim();\r\n        const meta = yaml.parse(frontmatter);\r\n\r\n        if (!meta.name) {\r\n          result.errors.push(`${file.name}: Missing 'name' in frontmatter`);\r\n          result.valid = false;\r\n        }\r\n\r\n        if (!meta.description) {\r\n          result.warnings.push(`${file.name}: Missing 'description' in frontmatter`);\r\n        }\r\n\r\n        // Validate tools array if present\r\n        if (meta.tools && !Array.isArray(meta.tools)) {\r\n          result.errors.push(`${file.name}: 'tools' must be an array`);\r\n          result.valid = false;\r\n        }\r\n\r\n        validatedCount++;\r\n\r\n        if (verbose) {\r\n          console.log(chalk.green(`  ✓ agents/${file.name}`));\r\n        }\r\n      } catch (e) {\r\n        result.errors.push(`${file.name}: ${(e as Error).message}`);\r\n        result.valid = false;\r\n      }\r\n    }\r\n\r\n    if (validatedCount === 0) {\r\n      result.errors.push(\"No .agent.md files found in .github/agents/\");\r\n      result.valid = false;\r\n    }\r\n\r\n    if (!verbose) {\r\n      console.log(chalk.gray(`  Validated ${validatedCount} agent(s)`));\r\n    }\r\n  } catch {\r\n    result.errors.push(\"No .github/agents/ directory found\");\r\n    result.valid = false;\r\n  }\r\n}\r\n\r\nasync function validateHooks(\r\n  rootPath: string,\r\n  result: ValidationResult,\r\n  verbose?: boolean\r\n): Promise<void> {\r\n  const hooksDir = path.join(rootPath, \".github\", \"hooks\");\r\n  const validEvents = [\"pre-commit\", \"post-commit\", \"pre-push\", \"pre-analyze\", \"post-generate\"];\r\n\r\n  try {\r\n    const files = await fs.readdir(hooksDir);\r\n    const hookFiles = files.filter((f) => f.endsWith(\".yaml\") || f.endsWith(\".yml\"));\r\n\r\n    if (hookFiles.length === 0) {\r\n      if (verbose) {\r\n        console.log(chalk.gray(\"  No hooks found\"));\r\n      }\r\n      return;\r\n    }\r\n\r\n    for (const file of hookFiles) {\r\n      const hookPath = path.join(hooksDir, file);\r\n      const content = await fs.readFile(hookPath, \"utf-8\");\r\n\r\n      try {\r\n        const hook = yaml.parse(content);\r\n\r\n        if (!hook.name) {\r\n          result.errors.push(`hooks/${file}: Missing 'name' field`);\r\n          result.valid = false;\r\n        }\r\n\r\n        if (!hook.event) {\r\n          result.errors.push(`hooks/${file}: Missing 'event' field`);\r\n          result.valid = false;\r\n        } else if (!validEvents.includes(hook.event)) {\r\n          result.errors.push(\r\n            `hooks/${file}: Invalid event '${hook.event}'. Must be one of: ${validEvents.join(\", \")}`\r\n          );\r\n          result.valid = false;\r\n        }\r\n\r\n        if (!hook.commands || !Array.isArray(hook.commands) || hook.commands.length === 0) {\r\n          result.errors.push(`hooks/${file}: Missing or empty 'commands' array`);\r\n          result.valid = false;\r\n        }\r\n\r\n        if (verbose) {\r\n          console.log(chalk.green(`  ✓ hooks/${file}`));\r\n        }\r\n      } catch (e) {\r\n        result.errors.push(`hooks/${file}: Invalid YAML - ${(e as Error).message}`);\r\n        result.valid = false;\r\n      }\r\n    }\r\n\r\n    if (!verbose) {\r\n      console.log(chalk.gray(`  Validated ${hookFiles.length} hook(s)`));\r\n    }\r\n  } catch {\r\n    // No hooks directory - that's okay\r\n    if (verbose) {\r\n      console.log(chalk.gray(\"  No hooks directory\"));\r\n    }\r\n  }\r\n}\r\n\r\nasync function validateRegistry(\r\n  rootPath: string,\r\n  result: ValidationResult,\r\n  verbose?: boolean\r\n): Promise<void> {\r\n  const registryPath = path.join(rootPath, \"skills-registry.jsonl\");\r\n\r\n  try {\r\n    const content = await fs.readFile(registryPath, \"utf-8\");\r\n    const lines = content.trim().split(\"\\n\").filter((l) => l.trim());\r\n\r\n    if (lines.length === 0) {\r\n      result.warnings.push(\"skills-registry.jsonl is empty\");\r\n      return;\r\n    }\r\n\r\n    for (let i = 0; i < lines.length; i++) {\r\n      try {\r\n        const entry = JSON.parse(lines[i]);\r\n        if (!entry.name || !entry.type) {\r\n          result.errors.push(`skills-registry.jsonl line ${i + 1}: Missing 'name' or 'type'`);\r\n          result.valid = false;\r\n        }\r\n      } catch {\r\n        result.errors.push(`skills-registry.jsonl line ${i + 1}: Invalid JSON`);\r\n        result.valid = false;\r\n      }\r\n    }\r\n\r\n    if (verbose) {\r\n      console.log(chalk.green(`  ✓ skills-registry.jsonl (${lines.length} entries)`));\r\n    } else {\r\n      console.log(chalk.gray(`  Validated registry (${lines.length} entries)`));\r\n    }\r\n  } catch {\r\n    result.warnings.push(\"No skills-registry.jsonl found\");\r\n  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package/package.json

@@ -0,0 +1,74 @@
+{
+  "name": "agentsmith-cli",
+  "version": "0.4.0",
+  "description": "Turn any GitHub repo into a multi-agent AI system for VS Code Copilot. Generates orchestrators, sub-agents, skills, handoffs, and copilot-instructions.md.",
+  "type": "module",
+  "main": "dist/main.js",
+  "bin": {
+    "agentsmith": "./bin/agentsmith.js"
+  },
+  "files": [
+    "dist",
+    "bin",
+    "README.md",
+    "LICENSE"
+  ],
+  "scripts": {
+    "build": "tsup",
+    "dev": "tsup --watch",
+    "start": "tsx src/main.ts",
+    "prepublishOnly": "npm run build",
+    "lint": "eslint src/",
+    "test": "vitest",
+    "typecheck": "tsc --noEmit"
+  },
+  "keywords": [
+    "cli",
+    "github-copilot",
+    "copilot-sdk",
+    "copilot-agents",
+    "copilot-custom-agents",
+    "agent",
+    "multi-agent",
+    "ai-agents",
+    "agentic-ai",
+    "agent-orchestration",
+    "skills",
+    "ai",
+    "vscode",
+    "code-analysis",
+    "repository-analysis",
+    "developer-tools",
+    "typescript",
+    "automation"
+  ],
+  "author": "",
+  "license": "MIT",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/shyamsridhar123/agentsmith-cli.git"
+  },
+  "homepage": "https://github.com/shyamsridhar123/agentsmith-cli",
+  "bugs": {
+    "url": "https://github.com/shyamsridhar123/agentsmith-cli/issues"
+  },
+  "dependencies": {
+    "@github/copilot-sdk": "^0.1.33-preview.2",
+    "chalk": "^5.3.0",
+    "commander": "^12.0.0",
+    "glob": "^10.3.0",
+    "simple-git": "^3.30.0",
+    "tsx": "^4.7.0",
+    "yaml": "^2.8.2",
+    "zod": "^3.22.0"
+  },
+  "devDependencies": {
+    "@types/node": "^20.0.0",
+    "tsup": "^8.0.0",
+    "typescript": "^5.3.0",
+    "vitest": "^1.2.0"
+  },
+  "engines": {
+    "node": ">=18.0.0"
+  }
+}