agents-reverse-engineer 0.4.4 → 0.4.6

package/dist/ai/backends/claude.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"claude.d.ts","sourceRoot":"","sources":["../../../src/ai/backends/claude.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAKH,OAAO,KAAK,EAAE,SAAS,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AA2CxE;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAsB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CA2BvE;AAMD;;;;;;;;;;;;;;;;;;GAkBG;AACH,qBAAa,aAAc,YAAW,SAAS;IAC7C,QAAQ,CAAC,IAAI,YAAY;IACzB,QAAQ,CAAC,UAAU,YAAY;IAE/B;;OAEG;IACG,WAAW,IAAI,OAAO,CAAC,OAAO,CAAC;IAIrC;;;;;;;;;OASG;IACH,SAAS,CAAC,OAAO,EAAE,aAAa,GAAG,MAAM,EAAE;IAuB3C;;;;;;;;;;;;OAYG;IACH,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,UAAU;IAsC/E;;OAEG;IACH,sBAAsB,IAAI,MAAM;CAOjC"}
+{"version":3,"file":"claude.d.ts","sourceRoot":"","sources":["../../../src/ai/backends/claude.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAKH,OAAO,KAAK,EAAE,SAAS,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AA2CxE;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAsB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CA2BvE;AAMD;;;;;;;;;;;;;;;;;;GAkBG;AACH,qBAAa,aAAc,YAAW,SAAS;IAC7C,QAAQ,CAAC,IAAI,YAAY;IACzB,QAAQ,CAAC,UAAU,YAAY;IAE/B;;OAEG;IACG,WAAW,IAAI,OAAO,CAAC,OAAO,CAAC;IAIrC;;;;;;;;;OASG;IACH,SAAS,CAAC,OAAO,EAAE,aAAa,GAAG,MAAM,EAAE;IAwB3C;;;;;;;;;;;;OAYG;IACH,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,UAAU;IAsC/E;;OAEG;IACH,sBAAsB,IAAI,MAAM;CAOjC"}

package/dist/ai/backends/claude.js

@@ -145,6 +145,7 @@ export class ClaudeBackend {
             '--output-format', 'json', // Structured JSON output
             '--no-session-persistence', // Don't save session to disk
             '--permission-mode', 'bypassPermissions', // Non-interactive: skip permission prompts (PITFALLS.md §8)
+            '--disallowedTools', 'Task', // Prevent subprocess from spawning its own subagents
         ];
         if (options.model) {
             args.push('--model', options.model);

package/dist/ai/backends/claude.js.map

@@ -1 +1 @@
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+{"version":3,"file":"claude.js","sourceRoot":"","sources":["../../../src/ai/backends/claude.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAE7C,8EAA8E;AAC9E,wCAAwC;AACxC,8EAA8E;AAE9E;;;;;;GAMG;AACH,MAAM,oBAAoB,GAAG,CAAC,CAAC,MAAM,CAAC;IACpC,IAAI,EAAE,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC;IACzB,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;IACrC,QAAQ,EAAE,CAAC,CAAC,OAAO,EAAE;IACrB,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE;IACvB,eAAe,EAAE,CAAC,CAAC,MAAM,EAAE;IAC3B,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE;IACrB,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE;IAClB,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE;IACtB,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE;IAC1B,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE;QACxB,2BAA2B,EAAE,CAAC,CAAC,MAAM,EAAE;QACvC,uBAAuB,EAAE,CAAC,CAAC,MAAM,EAAE;QACnC,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE;KAC1B,CAAC;IACF,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC;QAC5B,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE;QACvB,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE;QACxB,oBAAoB,EAAE,CAAC,CAAC,MAAM,EAAE;QAChC,wBAAwB,EAAE,CAAC,CAAC,MAAM,EAAE;QACpC,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE;KACpB,CAAC,CAAC;CACJ,CAAC,CAAC;AAEH,8EAA8E;AAC9E,yBAAyB;AACzB,8EAA8E;AAE9E;;;;;;;;;;;;;;;;;;;GAmBG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,OAAe;IACnD,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,EAAE,CAAC;IACvC,MAAM,QAAQ,GAAG,OAAO;SACrB,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;SACpB,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC;SACrB,MAAM,CAAC,OAAO,CAAC,CAAC;IAEnB,4EAA4E;IAC5E,0EAA0E;IAC1E,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC;IACzC,MAAM,UAAU,GAAG,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;IAErD,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;QAC3B,KAAK,MAAM,GAAG,IAAI,UAAU,EAAE,CAAC;YAC7B,IAAI,CAAC;gBACH,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,OAAO,GAAG,GAAG,CAAC,CAAC;gBAChD,MAAM,IAAI,GAAG,MAAM,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;gBACtC,IAAI,IAAI,CAAC,MAAM,EAAE,EAAE,CAAC;oBAClB,OAAO,IAAI,CAAC;gBACd,CAAC;YACH,CAAC;YAAC,MAAM,CAAC;gBACP,kDAAkD;YACpD,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAC;AACf,CAAC;AAED,8EAA8E;AAC9E,iBAAiB;AACjB,8EAA8E;AAE9E;;;;;;;;;;;;;;;;;;GAkBG;AACH,MAAM,OAAO,aAAa;IACf,IAAI,GAAG,QAAQ,CAAC;IAChB,UAAU,GAAG,QAAQ,CAAC;IAE/B;;OAEG;IACH,KAAK,CAAC,WAAW;QACf,OAAO,eAAe,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;IAC1C,CAAC;IAED;;;;;;;;;OASG;IACH,SAAS,CAAC,OAAsB;QAC9B,MAAM,IAAI,GAAa;YACrB,IAAI,EAAyB,6BAA6B;YAC1D,iBAAiB,EAAE,MAAM,EAAI,yBAAyB;YACtD,0BAA0B,EAAG,6BAA6B;YAC1D,mBAAmB,EAAE,mBAAmB,EAAG,4DAA4D;YACvG,mBAAmB,EAAE,MAAM,EAAE,qDAAqD;SACnF,CAAC;QAEF,IAAI,OAAO,CAAC,KAAK,EAAE,CAAC;YAClB,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,OAAO,CAAC,KAAK,CAAC,CAAC;QACtC,CAAC;QAED,IAAI,OAAO,CAAC,YAAY,EAAE,CAAC;YACzB,IAAI,CAAC,IAAI,CAAC,iBAAiB,EAAE,OAAO,CAAC,YAAY,CAAC,CAAC;QACrD,CAAC;QAED,IAAI,OAAO,CAAC,QAAQ,KAAK,SAAS,EAAE,CAAC;YACnC,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC;QACrD,CAAC;QAED,OAAO,IAAI,CAAC;IACd,CAAC;IAED;;;;;;;;;;;;OAYG;IACH,aAAa,CAAC,MAAc,EAAE,UAAkB,EAAE,QAAgB;QAChE,2EAA2E;QAC3E,MAAM,SAAS,GAAG,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QACtC,IAAI,SAAS,KAAK,CAAC,CAAC,EAAE,CAAC;YACrB,MAAM,IAAI,cAAc,CACtB,aAAa,EACb,4EAA4E,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CACnG,CAAC;QACJ,CAAC;QAED,IAAI,MAA4C,CAAC;QACjD,IAAI,CAAC;YACH,MAAM,GAAG,oBAAoB,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;QAC3E,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,OAAO,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACvE,MAAM,IAAI,cAAc,CACtB,aAAa,EACb,6CAA6C,OAAO,EAAE,CACvD,CAAC;QACJ,CAAC;QAED,wEAAwE;QACxE,MAAM,SAAS,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,IAAI,SAAS,CAAC;QAEjE,OAAO;YACL,IAAI,EAAE,MAAM,CAAC,MAAM;YACnB,KAAK,EAAE,SAAS;YAChB,WAAW,EAAE,MAAM,CAAC,KAAK,CAAC,YAAY;YACtC,YAAY,EAAE,MAAM,CAAC,KAAK,CAAC,aAAa;YACxC,eAAe,EAAE,MAAM,CAAC,KAAK,CAAC,uBAAuB;YACrD,mBAAmB,EAAE,MAAM,CAAC,KAAK,CAAC,2BAA2B;YAC7D,OAAO,EAAE,MAAM,CAAC,cAAc;YAC9B,UAAU;YACV,QAAQ;YACR,GAAG,EAAE,MAAM;SACZ,CAAC;IACJ,CAAC;IAED;;OAEG;IACH,sBAAsB;QACpB,OAAO;YACL,4BAA4B;YAC5B,4CAA4C;YAC5C,2BAA2B;SAC5B,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACf,CAAC;CACF"}

package/dist/ai/service.d.ts

@@ -69,6 +69,14 @@ export declare class AIService {
     private readonly warnedModels;
     /** Trace writer for concurrency debugging (may be no-op) */
     private tracer;
+    /** Whether debug mode is enabled */
+    private debug;
+    /** Number of currently active subprocesses */
+    private activeSubprocesses;
+    /** Directory for subprocess output logs (null = disabled) */
+    private subprocessLogDir;
+    /** Serializes log writes so concurrent workers don't interleave mkdirs */
+    private logWriteQueue;
     /**
      * Create a new AI service instance.
      *
@@ -82,6 +90,20 @@ export declare class AIService {
      * @param tracer - The trace writer instance
      */
     setTracer(tracer: ITraceWriter): void;
+    /**
+     * Enable debug mode for verbose subprocess logging to stderr.
+     */
+    setDebug(enabled: boolean): void;
+    /**
+     * Set a directory for writing subprocess stdout/stderr log files.
+     *
+     * When set, each subprocess invocation writes a `.log` file containing
+     * the metadata header, stdout, and stderr. Useful for diagnosing
+     * timed-out or failed subprocesses whose output would otherwise be lost.
+     *
+     * @param dir - Absolute path to the log directory (created on first write)
+     */
+    setSubprocessLogDir(dir: string): void;
     /**
      * Make an AI call with retry logic and telemetry recording.
      *
@@ -129,5 +151,12 @@ export declare class AIService {
      * @returns Current summary statistics
      */
     getSummary(): RunLog['summary'];
+    /**
+     * Enqueue a subprocess output log write.
+     *
+     * Serializes writes via a promise chain to avoid concurrent mkdir races.
+     * Failures are silently swallowed -- log writing is non-critical.
+     */
+    private enqueueSubprocessLog;
 }
 //# sourceMappingURL=service.d.ts.map

package/dist/ai/service.d.ts.map

@@ -1 +1 @@
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package/dist/ai/service.js

@@ -7,6 +7,8 @@
  *
  * @module
  */
+import { writeFile, mkdir } from 'node:fs/promises';
+import path from 'node:path';
 import { AIServiceError } from './types.js';
 import { runSubprocess } from './subprocess.js';
 import { withRetry, DEFAULT_RETRY_OPTIONS } from './retry.js';
@@ -34,6 +36,16 @@ function isRateLimitStderr(stderr) {
     const lower = stderr.toLowerCase();
     return RATE_LIMIT_PATTERNS.some((pattern) => lower.includes(pattern));
 }
+/**
+ * Format bytes as a human-readable string.
+ */
+function formatBytes(bytes) {
+    if (bytes < 1024)
+        return `${bytes}B`;
+    if (bytes < 1024 * 1024)
+        return `${(bytes / 1024).toFixed(1)}KB`;
+    return `${(bytes / (1024 * 1024)).toFixed(1)}MB`;
+}
 // ---------------------------------------------------------------------------
 // AIService
 // ---------------------------------------------------------------------------
@@ -76,6 +88,14 @@ export class AIService {
     warnedModels = new Set();
     /** Trace writer for concurrency debugging (may be no-op) */
     tracer = null;
+    /** Whether debug mode is enabled */
+    debug = false;
+    /** Number of currently active subprocesses */
+    activeSubprocesses = 0;
+    /** Directory for subprocess output logs (null = disabled) */
+    subprocessLogDir = null;
+    /** Serializes log writes so concurrent workers don't interleave mkdirs */
+    logWriteQueue = Promise.resolve();
     /**
      * Create a new AI service instance.
      *
@@ -95,6 +115,24 @@ export class AIService {
     setTracer(tracer) {
         this.tracer = tracer;
     }
+    /**
+     * Enable debug mode for verbose subprocess logging to stderr.
+     */
+    setDebug(enabled) {
+        this.debug = enabled;
+    }
+    /**
+     * Set a directory for writing subprocess stdout/stderr log files.
+     *
+     * When set, each subprocess invocation writes a `.log` file containing
+     * the metadata header, stdout, and stderr. Useful for diagnosing
+     * timed-out or failed subprocesses whose output would otherwise be lost.
+     *
+     * @param dir - Absolute path to the log directory (created on first write)
+     */
+    setSubprocessLogDir(dir) {
+        this.subprocessLogDir = dir;
+    }
     /**
      * Make an AI call with retry logic and telemetry recording.
      *
@@ -121,18 +159,31 @@ export class AIService {
         let retryCount = 0;
         try {
             const response = await withRetry(async () => {
+                if (this.debug) {
+                    const mem = process.memoryUsage();
+                    console.error(`[debug] Spawning subprocess for "${taskLabel}" ` +
+                        `(active: ${this.activeSubprocesses}, ` +
+                        `heapUsed: ${formatBytes(mem.heapUsed)}, ` +
+                        `rss: ${formatBytes(mem.rss)}, ` +
+                        `timeout: ${(timeoutMs / 1000).toFixed(0)}s)`);
+                }
+                this.activeSubprocesses++;
                 const result = await runSubprocess(this.backend.cliCommand, args, {
                     timeoutMs,
                     input: options.prompt,
+                    onSpawn: (pid) => {
+                        // Emit subprocess:spawn at actual spawn time (not after completion)
+                        this.tracer?.emit({
+                            type: 'subprocess:spawn',
+                            childPid: pid ?? -1,
+                            command: this.backend.cliCommand,
+                            taskLabel,
+                        });
+                    },
                 });
-                // Emit subprocess lifecycle trace events
+                this.activeSubprocesses--;
+                // Emit subprocess:exit after completion
                 if (this.tracer && result.childPid !== undefined) {
-                    this.tracer.emit({
-                        type: 'subprocess:spawn',
-                        childPid: result.childPid,
-                        command: this.backend.cliCommand,
-                        taskLabel,
-                    });
                     this.tracer.emit({
                         type: 'subprocess:exit',
                         childPid: result.childPid,
@@ -144,9 +195,21 @@ export class AIService {
                         timedOut: result.timedOut,
                     });
                 }
+                // Write subprocess output log (fire-and-forget, non-critical)
+                this.enqueueSubprocessLog(result, taskLabel);
                 if (result.timedOut) {
+                    console.error(`[warn] Subprocess timed out after ${(result.durationMs / 1000).toFixed(1)}s ` +
+                        `for "${taskLabel}" (PID ${result.childPid ?? 'unknown'}, ` +
+                        `timeout was ${(timeoutMs / 1000).toFixed(0)}s)`);
                     throw new AIServiceError('TIMEOUT', 'Subprocess timed out');
                 }
+                if (this.debug) {
+                    console.error(`[debug] Subprocess exited for "${taskLabel}" ` +
+                        `(PID ${result.childPid ?? 'unknown'}, ` +
+                        `exitCode: ${result.exitCode}, ` +
+                        `duration: ${(result.durationMs / 1000).toFixed(1)}s, ` +
+                        `active: ${this.activeSubprocesses})`);
+                }
                 if (result.exitCode !== 0) {
                     if (isRateLimitStderr(result.stderr)) {
                         throw new AIServiceError('RATE_LIMIT', `Rate limited by ${this.backend.name}: ${result.stderr.slice(0, 200)}`);
@@ -168,14 +231,20 @@ export class AIService {
                 ...DEFAULT_RETRY_OPTIONS,
                 maxRetries: this.options.maxRetries,
                 isRetryable: (error) => {
+                    // Only retry rate limits. Timeouts are NOT retried because
+                    // spawning another heavyweight subprocess on a system that's
+                    // already struggling (or against an unresponsive API) makes
+                    // things worse and can exhaust system resources.
                     return (error instanceof AIServiceError &&
-                        (error.code === 'RATE_LIMIT' || error.code === 'TIMEOUT'));
+                        error.code === 'RATE_LIMIT');
                 },
                 onRetry: (attempt, error) => {
                     retryCount++;
+                    const errorCode = error instanceof AIServiceError ? error.code : 'UNKNOWN';
+                    // Always warn on retry (not just debug) -- retries are noteworthy
+                    console.error(`[warn] Retrying "${taskLabel}" (attempt ${attempt}/${this.options.maxRetries}, reason: ${errorCode})`);
                     // Emit retry trace event
                     if (this.tracer) {
-                        const errorCode = error instanceof AIServiceError ? error.code : 'UNKNOWN';
                         this.tracer.emit({
                             type: 'retry',
                             attempt,
@@ -275,5 +344,36 @@ export class AIService {
     getSummary() {
         return this.logger.getSummary();
     }
+    /**
+     * Enqueue a subprocess output log write.
+     *
+     * Serializes writes via a promise chain to avoid concurrent mkdir races.
+     * Failures are silently swallowed -- log writing is non-critical.
+     */
+    enqueueSubprocessLog(result, taskLabel) {
+        if (this.subprocessLogDir === null)
+            return;
+        const dir = this.subprocessLogDir;
+        const sanitized = taskLabel.replace(/\//g, '--').replace(/[^a-zA-Z0-9._-]/g, '_');
+        const filename = `${sanitized}_pid${result.childPid ?? 0}.log`;
+        const filePath = path.join(dir, filename);
+        const content = `task:      ${taskLabel}\n` +
+            `pid:       ${result.childPid ?? 'unknown'}\n` +
+            `command:   ${this.backend.cliCommand}\n` +
+            `exit:      ${result.exitCode}\n` +
+            `signal:    ${result.signal ?? 'none'}\n` +
+            `duration:  ${result.durationMs}ms\n` +
+            `timed_out: ${result.timedOut}\n` +
+            `\n--- stdout ---\n` +
+            result.stdout +
+            `\n--- stderr ---\n` +
+            result.stderr;
+        this.logWriteQueue = this.logWriteQueue
+            .then(async () => {
+            await mkdir(dir, { recursive: true });
+            await writeFile(filePath, content, 'utf-8');
+        })
+            .catch(() => { });
+    }
 }
 //# sourceMappingURL=service.js.map

package/dist/ai/service.js.map

@@ -1 +1 @@
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package/dist/ai/subprocess.d.ts

@@ -3,11 +3,25 @@
  *
  * This is the ONLY place in the codebase that spawns AI CLI processes.
  * Centralizes timeout enforcement, stdin piping, zombie prevention,
- * and exit code extraction.
+ * SIGKILL escalation, and exit code extraction.
  *
  * @module
  */
 import type { SubprocessResult } from './types.js';
+/**
+ * Options for subprocess execution.
+ */
+export interface SubprocessOptions {
+    /** Maximum time in milliseconds before the process is killed */
+    timeoutMs: number;
+    /** Optional stdin input to pipe to the process */
+    input?: string;
+    /**
+     * Callback fired synchronously when the child process is spawned.
+     * Use this for trace events that need the actual spawn time.
+     */
+    onSpawn?: (pid: number | undefined) => void;
+}
 /**
  * Spawn a CLI subprocess with timeout enforcement and stdin piping.
  *
@@ -15,9 +29,14 @@ import type { SubprocessResult } from './types.js';
  * {@link SubprocessResult} fields (`exitCode`, `timedOut`, `stderr`) so
  * that callers can decide how to handle failures.
  *
+ * When the subprocess exceeds its timeout, `execFile` sends SIGTERM.
+ * If the process doesn't exit within {@link SIGKILL_GRACE_MS} after
+ * SIGTERM, we escalate to SIGKILL to prevent hung processes from
+ * lingering indefinitely.
+ *
  * @param command - The CLI executable to run (e.g., "claude", "gemini")
  * @param args - Argument array passed to the executable
- * @param options - Timeout and optional stdin input
+ * @param options - Timeout, optional stdin input, and spawn callback
  * @returns Resolved result with stdout, stderr, exit code, timing, and timeout flag
  *
  * @example
@@ -27,6 +46,7 @@ import type { SubprocessResult } from './types.js';
  * const result = await runSubprocess('claude', ['-p', '--output-format', 'json'], {
  *   timeoutMs: 120_000,
  *   input: 'Summarize this codebase',
+ *   onSpawn: (pid) => console.log(`Spawned PID ${pid}`),
  * });
  *
  * if (result.timedOut) {
@@ -38,8 +58,5 @@ import type { SubprocessResult } from './types.js';
  * }
  * ```
  */
-export declare function runSubprocess(command: string, args: string[], options: {
-    timeoutMs: number;
-    input?: string;
-}): Promise<SubprocessResult>;
+export declare function runSubprocess(command: string, args: string[], options: SubprocessOptions): Promise<SubprocessResult>;
 //# sourceMappingURL=subprocess.d.ts.map

package/dist/ai/subprocess.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"subprocess.d.ts","sourceRoot":"","sources":["../../src/ai/subprocess.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAGH,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAKnD;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,gEAAgE;IAChE,SAAS,EAAE,MAAM,CAAC;IAClB,kDAAkD;IAClD,KAAK,CAAC,EAAE,MAAM,CAAC;IACf;;;OAGG;IACH,OAAO,CAAC,EAAE,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,KAAK,IAAI,CAAC;CAC7C;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAmCG;AACH,wBAAgB,aAAa,CAC3B,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EAAE,EACd,OAAO,EAAE,iBAAiB,GACzB,OAAO,CAAC,gBAAgB,CAAC,CAgF3B"}

package/dist/ai/subprocess.js

@@ -3,11 +3,13 @@
  *
  * This is the ONLY place in the codebase that spawns AI CLI processes.
  * Centralizes timeout enforcement, stdin piping, zombie prevention,
- * and exit code extraction.
+ * SIGKILL escalation, and exit code extraction.
  *
  * @module
  */
 import { execFile } from 'node:child_process';
+/** Grace period after SIGTERM before escalating to SIGKILL (ms) */
+const SIGKILL_GRACE_MS = 5_000;
 /**
  * Spawn a CLI subprocess with timeout enforcement and stdin piping.
  *
@@ -15,9 +17,14 @@ import { execFile } from 'node:child_process';
  * {@link SubprocessResult} fields (`exitCode`, `timedOut`, `stderr`) so
  * that callers can decide how to handle failures.
  *
+ * When the subprocess exceeds its timeout, `execFile` sends SIGTERM.
+ * If the process doesn't exit within {@link SIGKILL_GRACE_MS} after
+ * SIGTERM, we escalate to SIGKILL to prevent hung processes from
+ * lingering indefinitely.
+ *
  * @param command - The CLI executable to run (e.g., "claude", "gemini")
  * @param args - Argument array passed to the executable
- * @param options - Timeout and optional stdin input
+ * @param options - Timeout, optional stdin input, and spawn callback
  * @returns Resolved result with stdout, stderr, exit code, timing, and timeout flag
  *
  * @example
@@ -27,6 +34,7 @@ import { execFile } from 'node:child_process';
  * const result = await runSubprocess('claude', ['-p', '--output-format', 'json'], {
  *   timeoutMs: 120_000,
  *   input: 'Summarize this codebase',
+ *   onSpawn: (pid) => console.log(`Spawned PID ${pid}`),
  * });
  *
  * if (result.timedOut) {
@@ -41,13 +49,18 @@ import { execFile } from 'node:child_process';
 export function runSubprocess(command, args, options) {
     return new Promise((resolve) => {
         const startTime = Date.now();
+        let sigkillTimer;
         const child = execFile(command, args, {
             timeout: options.timeoutMs,
             killSignal: 'SIGTERM',
             maxBuffer: 10 * 1024 * 1024, // 10MB for large AI responses
             encoding: 'utf-8',
+            env: { ...process.env, CLAUDE_CODE_DISABLE_BACKGROUND_TASKS: '1' },
         }, (error, stdout, stderr) => {
             const durationMs = Date.now() - startTime;
+            // Clear SIGKILL escalation timer -- process has exited
+            if (sigkillTimer !== undefined)
+                clearTimeout(sigkillTimer);
             // Detect timeout: execFile sets `killed = true` when the process
             // is terminated due to exceeding the timeout option.
             const timedOut = error !== null && 'killed' in error && error.killed === true;
@@ -79,6 +92,23 @@ export function runSubprocess(command, args, options) {
                 childPid: child.pid,
             });
         });
+        // Notify caller of spawn (for trace events at actual spawn time)
+        options.onSpawn?.(child.pid);
+        // SIGKILL escalation: if the process doesn't exit within
+        // timeout + grace period, force-kill it. This handles cases where
+        // SIGTERM is caught/ignored by the child or its process tree.
+        if (child.pid !== undefined) {
+            sigkillTimer = setTimeout(() => {
+                try {
+                    child.kill('SIGKILL');
+                }
+                catch {
+                    // Process may already be dead -- ignore
+                }
+            }, options.timeoutMs + SIGKILL_GRACE_MS);
+            // Don't let this timer keep the event loop alive
+            sigkillTimer.unref();
+        }
         // Write prompt to stdin if provided, then close the stream.
         // IMPORTANT: Always call .end() -- the child process blocks waiting
         // for EOF on stdin otherwise (see RESEARCH.md Pitfall 1).

package/dist/ai/subprocess.js.map

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package/dist/cli/generate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"generate.d.ts","sourceRoot":"","sources":["../../src/cli/generate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAyBH;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,oCAAoC;IACpC,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,mCAAmC;IACnC,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,6CAA6C;IAC7C,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,4BAA4B;IAC5B,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,oCAAoC;IACpC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0CAA0C;IAC1C,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,0CAA0C;IAC1C,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,qEAAqE;IACrE,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,oEAAoE;IACpE,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,0DAA0D;IAC1D,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAuFD;;;;;;;;;;GAUG;AACH,wBAAsB,eAAe,CACnC,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,eAAe,GACvB,OAAO,CAAC,IAAI,CAAC,CA0Lf"}
+{"version":3,"file":"generate.d.ts","sourceRoot":"","sources":["../../src/cli/generate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAyBH;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,oCAAoC;IACpC,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,mCAAmC;IACnC,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,6CAA6C;IAC7C,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,4BAA4B;IAC5B,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,oCAAoC;IACpC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0CAA0C;IAC1C,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,0CAA0C;IAC1C,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,qEAAqE;IACrE,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,oEAAoE;IACpE,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,0DAA0D;IAC1D,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAuFD;;;;;;;;;;GAUG;AACH,wBAAsB,eAAe,CACnC,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,eAAe,GACvB,OAAO,CAAC,IAAI,CAAC,CAwMf"}

package/dist/cli/generate.js

@@ -220,6 +220,9 @@ export async function generateCommand(targetPath, options) {
         maxRetries: config.ai.maxRetries,
         telemetry: { keepRuns: config.ai.telemetry.keepRuns },
     });
+    if (options.debug) {
+        aiService.setDebug(true);
+    }
     // Build execution plan
     const executionPlan = buildExecutionPlan(plan, absolutePath);
     // Determine concurrency
@@ -229,6 +232,12 @@ export async function generateCommand(targetPath, options) {
     if (options.trace && tracer.filePath) {
         console.error(pc.dim(`[trace] Writing to ${tracer.filePath}`));
     }
+    // Enable subprocess output logging alongside tracing
+    if (options.trace) {
+        const logDir = path.join(absolutePath, '.agents-reverse-engineer', 'subprocess-logs', new Date().toISOString().replace(/[:.]/g, '-'));
+        aiService.setSubprocessLogDir(logDir);
+        console.error(pc.dim(`[trace] Subprocess logs → ${logDir}`));
+    }
     // Create command runner
     const runner = new CommandRunner(aiService, {
         concurrency,

package/dist/cli/generate.js.map

@@ -1 +1 @@
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package/dist/cli/update.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../src/cli/update.ts"],"names":[],"mappings":"AA2BA;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,+DAA+D;IAC/D,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,oCAAoC;IACpC,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,2BAA2B;IAC3B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,iDAAiD;IACjD,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,4BAA4B;IAC5B,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,oCAAoC;IACpC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0CAA0C;IAC1C,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,0CAA0C;IAC1C,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,qEAAqE;IACrE,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAuGD;;;;;;;;;;;;;GAaG;AACH,wBAAsB,aAAa,CACjC,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,IAAI,CAAC,CAoLf"}
+{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../src/cli/update.ts"],"names":[],"mappings":"AA2BA;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,+DAA+D;IAC/D,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,oCAAoC;IACpC,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,2BAA2B;IAC3B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,iDAAiD;IACjD,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,4BAA4B;IAC5B,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,oCAAoC;IACpC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0CAA0C;IAC1C,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,0CAA0C;IAC1C,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,qEAAqE;IACrE,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAuGD;;;;;;;;;;;;;GAaG;AACH,wBAAsB,aAAa,CACjC,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,IAAI,CAAC,CAkMf"}

package/dist/cli/update.js

@@ -192,6 +192,9 @@ export async function updateCommand(targetPath, options) {
             maxRetries: config.ai.maxRetries,
             telemetry: { keepRuns: config.ai.telemetry.keepRuns },
         });
+        if (options.debug) {
+            aiService.setDebug(true);
+        }
         // Determine concurrency
         const concurrency = options.concurrency ?? config.ai.concurrency;
         // Create trace writer (no-op when --trace is not set)
@@ -199,6 +202,12 @@ export async function updateCommand(targetPath, options) {
         if (options.trace && tracer.filePath) {
             console.error(pc.dim(`[trace] Writing to ${tracer.filePath}`));
         }
+        // Enable subprocess output logging alongside tracing
+        if (options.trace) {
+            const logDir = path.join(absolutePath, '.agents-reverse-engineer', 'subprocess-logs', new Date().toISOString().replace(/[:.]/g, '-'));
+            aiService.setSubprocessLogDir(logDir);
+            console.error(pc.dim(`[trace] Subprocess logs → ${logDir}`));
+        }
         // Create command runner
         const runner = new CommandRunner(aiService, {
             concurrency,

package/dist/cli/update.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agents-reverse-engineer",
-  "version": "0.4.4",
+  "version": "0.4.6",
   "description": "CLI tool for reverse-engineering codebase documentation for AI agents",
   "type": "module",
   "bin": {