agents-reverse-engineer 0.4.1 → 0.4.3

package/dist/orchestration/plan-tracker.js

@@ -0,0 +1,59 @@
+/**
+ * Progress tracker that updates GENERATION-PLAN.md checkboxes during generation.
+ *
+ * Maintains the markdown content in memory for fast updates and serializes
+ * disk writes via a promise chain to handle concurrent Phase 1 completions.
+ *
+ * @module
+ */
+import { writeFile, mkdir } from 'node:fs/promises';
+import * as path from 'node:path';
+import { CONFIG_DIR } from '../config/loader.js';
+/**
+ * Tracks generation progress by ticking checkboxes in GENERATION-PLAN.md.
+ *
+ * Create one instance at the start of `executeGenerate()`, call `markDone()`
+ * as tasks complete, and `flush()` before returning.
+ */
+export class PlanTracker {
+    content;
+    planPath;
+    writeQueue = Promise.resolve();
+    constructor(projectRoot, initialMarkdown) {
+        this.planPath = path.join(projectRoot, CONFIG_DIR, 'GENERATION-PLAN.md');
+        this.content = initialMarkdown;
+    }
+    /** Write the initial plan file to disk. */
+    async initialize() {
+        try {
+            await mkdir(path.dirname(this.planPath), { recursive: true });
+            await writeFile(this.planPath, this.content, 'utf8');
+        }
+        catch {
+            // Non-critical — generation continues without tracking
+        }
+    }
+    /**
+     * Mark a task as done by replacing its checkbox.
+     *
+     * The caller must pass the exact path as it appears in the markdown:
+     * - File: `src/cli/init.ts`
+     * - Directory: `src/cli/AGENTS.md`  (caller appends `/AGENTS.md`)
+     * - Root doc: `CLAUDE.md`
+     */
+    markDone(itemPath) {
+        const before = this.content;
+        this.content = this.content.replace(`- [ ] \`${itemPath}\``, `- [x] \`${itemPath}\``);
+        if (this.content === before)
+            return; // no match — skip write
+        // Queue a serialized write so concurrent markDone() calls don't corrupt the file
+        this.writeQueue = this.writeQueue
+            .then(() => writeFile(this.planPath, this.content, 'utf8'))
+            .catch(() => { });
+    }
+    /** Wait for all queued writes to finish. */
+    async flush() {
+        await this.writeQueue;
+    }
+}
+//# sourceMappingURL=plan-tracker.js.map

package/dist/orchestration/plan-tracker.js.map

@@ -0,0 +1 @@
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package/dist/orchestration/runner.d.ts

@@ -6,7 +6,7 @@
  *
  * The three execution phases match the {@link ExecutionPlan} dependency graph:
  * 1. **File analysis** -- concurrent AI calls with configurable parallelism
- * 2. **Directory docs** -- sequential, post-order AGENTS.md generation
+ * 2. **Directory docs** -- concurrent per depth level, post-order AGENTS.md generation
  * 3. **Root documents** -- sequential AI calls for CLAUDE.md, ARCHITECTURE.md, etc.
  *
  * @module

package/dist/orchestration/runner.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"runner.d.ts","sourceRoot":"","sources":["../../src/orchestration/runner.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAIH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAEhD,OAAO,KAAK,EAAE,aAAa,EAAiB,MAAM,2BAA2B,CAAC;AAK9E,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAC;AAG/D,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAYlD,OAAO,KAAK,EAEV,UAAU,EACV,iBAAiB,EAClB,MAAM,YAAY,CAAC;AAMpB;;;;;;;;;;;;;;;;;;GAkBG;AACH,qBAAa,aAAa;IACxB,2CAA2C;IAC3C,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAY;IAEtC,gCAAgC;IAChC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAoB;IAE5C;;;;;OAKG;gBACS,SAAS,EAAE,SAAS,EAAE,OAAO,EAAE,iBAAiB;IAK5D;;;;;;;;;;OAUG;IACG,eAAe,CAAC,IAAI,EAAE,aAAa,GAAG,OAAO,CAAC,UAAU,CAAC;IAoU/D;;;;;;;;;;;OAWG;IACG,aAAa,CACjB,cAAc,EAAE,UAAU,EAAE,EAC5B,WAAW,EAAE,MAAM,EACnB,MAAM,EAAE,MAAM,GACb,OAAO,CAAC,UAAU,CAAC;CAiOvB"}

package/dist/orchestration/runner.js

@@ -6,20 +6,22 @@
  *
  * The three execution phases match the {@link ExecutionPlan} dependency graph:
  * 1. **File analysis** -- concurrent AI calls with configurable parallelism
- * 2. **Directory docs** -- sequential, post-order AGENTS.md generation
+ * 2. **Directory docs** -- concurrent per depth level, post-order AGENTS.md generation
  * 3. **Root documents** -- sequential AI calls for CLAUDE.md, ARCHITECTURE.md, etc.
  *
  * @module
  */
 import * as path from 'node:path';
-import { readFile, writeFile, stat } from 'node:fs/promises';
+import { readFile, writeFile } from 'node:fs/promises';
 import { writeSumFile, readSumFile } from '../generation/writers/sum.js';
 import { writeAgentsMd } from '../generation/writers/agents-md.js';
-import { computeContentHash } from '../change-detection/index.js';
+import { computeContentHashFromString } from '../change-detection/index.js';
 import { detectFileType } from '../generation/detection/detector.js';
 import { buildPrompt, buildDirectoryPrompt } from '../generation/prompts/index.js';
 import { checkCodeVsDoc, checkCodeVsCode, buildInconsistencyReport, formatReportForCli, } from '../quality/index.js';
+import { formatExecutionPlanAsMarkdown } from '../generation/executor.js';
 import { runPool } from './pool.js';
+import { PlanTracker } from './plan-tracker.js';
 import { ProgressReporter } from './progress.js';
 // ---------------------------------------------------------------------------
 // CommandRunner
@@ -71,14 +73,18 @@ export class CommandRunner {
      */
     async executeGenerate(plan) {
         const reporter = new ProgressReporter(plan.fileTasks.length, this.options.quiet ?? false);
+        // Initialize plan tracker (writes GENERATION-PLAN.md with checkboxes)
+        const planTracker = new PlanTracker(plan.projectRoot, formatExecutionPlanAsMarkdown(plan));
+        await planTracker.initialize();
         const runStart = Date.now();
         let filesProcessed = 0;
         let filesFailed = 0;
         // -------------------------------------------------------------------
         // Pre-Phase 1: Cache old .sum content for stale documentation detection
+        // Throttled to avoid opening too many file descriptors at once.
         // -------------------------------------------------------------------
         const oldSumCache = new Map();
-        for (const task of plan.fileTasks) {
+        const sumReadTasks = plan.fileTasks.map((task) => async () => {
             try {
                 const existing = await readSumFile(`${task.absolutePath}.sum`);
                 if (existing) {
@@ -88,28 +94,31 @@ export class CommandRunner {
             catch {
                 // No old .sum to compare -- skip
             }
-        }
+        });
+        await runPool(sumReadTasks, { concurrency: 20 });
         // -------------------------------------------------------------------
         // Phase 1: File analysis (concurrent)
         // -------------------------------------------------------------------
+        // Cache source content during Phase 1, reused for inconsistency detection
+        const sourceContentCache = new Map();
         const fileTasks = plan.fileTasks.map((task, taskIndex) => async () => {
             reporter.onFileStart(task.path);
             const callStart = Date.now();
             // Read the source file
             const sourceContent = await readFile(task.absolutePath, 'utf-8');
+            sourceContentCache.set(task.path, sourceContent);
             // Call AI with the task's prompts
             const response = await this.aiService.call({
                 prompt: task.userPrompt,
                 systemPrompt: task.systemPrompt,
             });
-            // Track file size for telemetry
-            const fileStat = await stat(task.absolutePath);
+            // Track file size for telemetry (from in-memory content, avoids stat syscall)
             this.aiService.addFilesReadToLastEntry([{
                     path: task.path,
-                    sizeBytes: fileStat.size,
+                    sizeBytes: Buffer.byteLength(sourceContent, 'utf-8'),
                 }]);
-            // Compute content hash for change detection
-            const contentHash = await computeContentHash(task.absolutePath);
+            // Compute content hash from already-loaded content (avoids second readFile)
+            const contentHash = computeContentHashFromString(sourceContent);
             // Build .sum file content
             const sumContent = {
                 summary: response.text,
@@ -143,6 +152,7 @@ export class CommandRunner {
                 const v = result.value;
                 filesProcessed++;
                 reporter.onFileDone(v.path, v.durationMs, v.tokensIn, v.tokensOut, v.model);
+                planTracker.markDone(v.path);
             }
             else {
                 filesFailed++;
@@ -179,17 +189,24 @@ export class CommandRunner {
                     dirGroups.set(dir, [filePath]);
                 }
             }
-            // Run checks per directory group
-            for (const [, groupPaths] of dirGroups) {
+            // Run checks per directory group (throttled to avoid excessive parallel I/O)
+            const dirEntries = Array.from(dirGroups.entries());
+            const dirCheckResults = [];
+            const dirCheckTasks = dirEntries.map(([, groupPaths], groupIndex) => async () => {
+                const dirIssues = [];
                 const filesForCodeVsCode = [];
+                // Process files within this group sequentially to limit I/O
                 for (const filePath of groupPaths) {
                     const absoluteFilePath = `${plan.projectRoot}/${filePath}`;
-                    let sourceContent;
-                    try {
-                        sourceContent = await readFile(absoluteFilePath, 'utf-8');
-                    }
-                    catch {
-                        continue; // File unreadable, skip
+                    // Use cached content from Phase 1 (avoids re-read)
+                    let sourceContent = sourceContentCache.get(filePath);
+                    if (!sourceContent) {
+                        try {
+                            sourceContent = await readFile(absoluteFilePath, 'utf-8');
+                        }
+                        catch {
+                            continue; // File unreadable, skip
+                        }
                     }
                     filesForCodeVsCode.push({ path: filePath, content: sourceContent });
                     // Old-doc check: detects stale documentation
@@ -198,7 +215,7 @@ export class CommandRunner {
                         const oldIssue = checkCodeVsDoc(sourceContent, oldSum, filePath);
                         if (oldIssue) {
                             oldIssue.description += ' (stale documentation)';
-                            allIssues.push(oldIssue);
+                            dirIssues.push(oldIssue);
                         }
                     }
                     // New-doc check: detects LLM omissions in freshly generated .sum
@@ -207,7 +224,7 @@ export class CommandRunner {
                         if (newSum) {
                             const newIssue = checkCodeVsDoc(sourceContent, newSum, filePath);
                             if (newIssue) {
-                                allIssues.push(newIssue);
+                                dirIssues.push(newIssue);
                             }
                         }
                     }
@@ -217,8 +234,14 @@ export class CommandRunner {
                 }
                 // Code-vs-code check scoped to this directory group
                 const codeIssues = checkCodeVsCode(filesForCodeVsCode);
-                allIssues.push(...codeIssues);
-            }
+                dirIssues.push(...codeIssues);
+                dirCheckResults[groupIndex] = dirIssues;
+            });
+            await runPool(dirCheckTasks, { concurrency: 10 });
+            const allIssuesFlat = dirCheckResults.filter(Boolean).flat();
+            allIssues.push(...allIssuesFlat);
+            // Release cached source content to free memory
+            sourceContentCache.clear();
             if (allIssues.length > 0) {
                 const report = buildInconsistencyReport(allIssues, {
                     projectRoot: plan.projectRoot,
@@ -236,16 +259,39 @@ export class CommandRunner {
             console.error(`[quality] Inconsistency detection failed: ${err instanceof Error ? err.message : String(err)}`);
         }
         // -------------------------------------------------------------------
-        // Phase 2: Directory docs (sequential, post-order)
+        // Phase 2: Directory docs (concurrent per depth level, post-order)
         // -------------------------------------------------------------------
+        // Group directory tasks by depth so same-depth dirs run in parallel
+        // while maintaining post-order (children before parents)
+        const dirsByDepth = new Map();
         for (const dirTask of plan.directoryTasks) {
-            const prompt = await buildDirectoryPrompt(dirTask.absolutePath, plan.projectRoot);
-            const dirResponse = await this.aiService.call({
-                prompt: prompt.user,
-                systemPrompt: prompt.system,
+            const depth = dirTask.metadata.depth ?? 0;
+            const group = dirsByDepth.get(depth);
+            if (group) {
+                group.push(dirTask);
+            }
+            else {
+                dirsByDepth.set(depth, [dirTask]);
+            }
+        }
+        // Process depth levels in descending order (deepest first = post-order)
+        const depthLevels = Array.from(dirsByDepth.keys()).sort((a, b) => b - a);
+        for (const depth of depthLevels) {
+            const dirsAtDepth = dirsByDepth.get(depth);
+            const dirTasks = dirsAtDepth.map((dirTask) => async () => {
+                const prompt = await buildDirectoryPrompt(dirTask.absolutePath, plan.projectRoot);
+                const dirResponse = await this.aiService.call({
+                    prompt: prompt.user,
+                    systemPrompt: prompt.system,
+                });
+                await writeAgentsMd(dirTask.absolutePath, plan.projectRoot, dirResponse.text);
+                reporter.onDirectoryDone(dirTask.path);
+                planTracker.markDone(`${dirTask.path}/AGENTS.md`);
+            });
+            await runPool(dirTasks, {
+                concurrency: Math.min(this.options.concurrency, dirsAtDepth.length),
+                failFast: this.options.failFast,
             });
-            await writeAgentsMd(dirTask.absolutePath, plan.projectRoot, dirResponse.text);
-            reporter.onDirectoryDone(dirTask.path);
         }
         // -------------------------------------------------------------------
         // Phase 3: Root documents (sequential)
@@ -257,7 +303,10 @@ export class CommandRunner {
             });
             await writeFile(rootTask.outputPath, response.text, 'utf-8');
             reporter.onRootDone(rootTask.path);
+            planTracker.markDone(rootTask.path);
         }
+        // Ensure all plan tracker writes are flushed
+        await planTracker.flush();
         // -------------------------------------------------------------------
         // Build and print summary
         // -------------------------------------------------------------------
@@ -301,12 +350,15 @@ export class CommandRunner {
         const runStart = Date.now();
         let filesProcessed = 0;
         let filesFailed = 0;
+        // Cache source content during update, reused for inconsistency detection
+        const updateSourceCache = new Map();
         const updateTasks = filesToAnalyze.map((file, fileIndex) => async () => {
             reporter.onFileStart(file.path);
             const callStart = Date.now();
             const absolutePath = `${projectRoot}/${file.path}`;
             // Read the source file
             const sourceContent = await readFile(absolutePath, 'utf-8');
+            updateSourceCache.set(file.path, sourceContent);
             // Detect file type and build prompt
             const fileType = detectFileType(file.path, sourceContent);
             const prompt = buildPrompt({
@@ -319,14 +371,13 @@ export class CommandRunner {
                 prompt: prompt.user,
                 systemPrompt: prompt.system,
             });
-            // Track file size for telemetry
-            const fileStat = await stat(absolutePath);
+            // Track file size for telemetry (from in-memory content, avoids stat syscall)
             this.aiService.addFilesReadToLastEntry([{
                     path: file.path,
-                    sizeBytes: fileStat.size,
+                    sizeBytes: Buffer.byteLength(sourceContent, 'utf-8'),
                 }]);
-            // Compute content hash for change detection
-            const contentHash = await computeContentHash(absolutePath);
+            // Compute content hash from already-loaded content (avoids second readFile)
+            const contentHash = computeContentHashFromString(sourceContent);
             // Build .sum file content
             const sumContent = {
                 summary: response.text,
@@ -396,17 +447,23 @@ export class CommandRunner {
                     dirGroups.set(dir, [filePath]);
                 }
             }
-            // Run checks per directory group
-            for (const [, groupPaths] of dirGroups) {
+            // Run checks per directory group (throttled to avoid excessive parallel I/O)
+            const updateDirEntries = Array.from(dirGroups.entries());
+            const updateDirResults = [];
+            const updateDirCheckTasks = updateDirEntries.map(([, groupPaths], groupIndex) => async () => {
+                const dirIssues = [];
                 const filesForCodeVsCode = [];
                 for (const filePath of groupPaths) {
                     const absoluteFilePath = `${projectRoot}/${filePath}`;
-                    let sourceContent;
-                    try {
-                        sourceContent = await readFile(absoluteFilePath, 'utf-8');
-                    }
-                    catch {
-                        continue;
+                    // Use cached content from update phase (avoids re-read)
+                    let sourceContent = updateSourceCache.get(filePath);
+                    if (!sourceContent) {
+                        try {
+                            sourceContent = await readFile(absoluteFilePath, 'utf-8');
+                        }
+                        catch {
+                            continue;
+                        }
                     }
                     filesForCodeVsCode.push({ path: filePath, content: sourceContent });
                     // New-doc check: detects LLM omissions in freshly generated .sum
@@ -415,7 +472,7 @@ export class CommandRunner {
                         if (newSum) {
                             const newIssue = checkCodeVsDoc(sourceContent, newSum, filePath);
                             if (newIssue) {
-                                allIssues.push(newIssue);
+                                dirIssues.push(newIssue);
                             }
                         }
                     }
@@ -425,8 +482,14 @@ export class CommandRunner {
                 }
                 // Code-vs-code check scoped to this directory group
                 const codeIssues = checkCodeVsCode(filesForCodeVsCode);
-                allIssues.push(...codeIssues);
-            }
+                dirIssues.push(...codeIssues);
+                updateDirResults[groupIndex] = dirIssues;
+            });
+            await runPool(updateDirCheckTasks, { concurrency: 10 });
+            const allIssuesFlat = updateDirResults.filter(Boolean).flat();
+            allIssues.push(...allIssuesFlat);
+            // Release cached source content to free memory
+            updateSourceCache.clear();
             if (allIssues.length > 0) {
                 const report = buildInconsistencyReport(allIssues, {
                     projectRoot,

package/dist/orchestration/runner.js.map

@@ -1 +1 @@
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package/hooks/dist/opencode-are-check-update.js

@@ -0,0 +1,76 @@
+#!/usr/bin/env node
+/**
+ * ARE Update Check Plugin for OpenCode
+ *
+ * Checks for ARE updates in background, writes result to cache.
+ * OpenCode equivalent of the Claude/Gemini SessionStart hook.
+ *
+ * Cache file: ~/.config/opencode/cache/are-update-check.json
+ */
+
+import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';
+import { homedir } from 'os';
+import { join } from 'path';
+import { spawn } from 'child_process';
+
+export const AreCheckUpdate = async () => {
+  return {
+    event: {
+      'session.created': async () => {
+        const homeDir = homedir();
+        const cwd = process.cwd();
+        const cacheDir = join(homeDir, '.config', 'opencode', 'cache');
+        const cacheFile = join(cacheDir, 'are-update-check.json');
+
+        // ARE-VERSION file locations (check project first, then global)
+        const projectVersionFile = join(cwd, '.opencode', 'ARE-VERSION');
+        const globalVersionFile = join(homeDir, '.config', 'opencode', 'ARE-VERSION');
+
+        // Ensure cache directory exists
+        if (!existsSync(cacheDir)) {
+          mkdirSync(cacheDir, { recursive: true });
+        }
+
+        // Run check in background (spawn background process)
+        const child = spawn(process.execPath, ['-e', `
+          const fs = require('fs');
+          const { execSync } = require('child_process');
+
+          const cacheFile = ${JSON.stringify(cacheFile)};
+          const projectVersionFile = ${JSON.stringify(projectVersionFile)};
+          const globalVersionFile = ${JSON.stringify(globalVersionFile)};
+
+          // Check project directory first (local install), then global
+          let installed = '0.0.0';
+          try {
+            if (fs.existsSync(projectVersionFile)) {
+              installed = fs.readFileSync(projectVersionFile, 'utf8').trim();
+            } else if (fs.existsSync(globalVersionFile)) {
+              installed = fs.readFileSync(globalVersionFile, 'utf8').trim();
+            }
+          } catch (e) {}
+
+          let latest = null;
+          try {
+            latest = execSync('npm view agents-reverse-engineer version', { encoding: 'utf8', timeout: 10000, windowsHide: true }).trim();
+          } catch (e) {}
+
+          const result = {
+            update_available: latest && installed !== latest,
+            installed,
+            latest: latest || 'unknown',
+            checked: Math.floor(Date.now() / 1000)
+          };
+
+          fs.writeFileSync(cacheFile, JSON.stringify(result));
+        `], {
+          stdio: 'ignore',
+          detached: true,
+          windowsHide: true,
+        });
+
+        child.unref();
+      },
+    },
+  };
+};

package/hooks/dist/opencode-are-session-end.js

@@ -0,0 +1,50 @@
+#!/usr/bin/env node
+/**
+ * ARE Session End Plugin for OpenCode
+ *
+ * Triggers `are update` when session ends (if there are uncommitted changes).
+ * OpenCode equivalent of the Claude/Gemini SessionEnd hook.
+ *
+ * Runs in background to avoid blocking session close.
+ *
+ * Disable via:
+ * - Environment variable: ARE_DISABLE_HOOK=1
+ * - Config file: hook_enabled: false in .agents-reverse-engineer.yaml
+ */
+
+import { execSync, spawn } from 'child_process';
+import { existsSync, readFileSync } from 'fs';
+
+export const AreSessionEnd = async () => {
+  return {
+    event: {
+      'session.deleted': async () => {
+        // Check for disable flag
+        if (process.env.ARE_DISABLE_HOOK === '1') return;
+
+        // Check config file for permanent disable
+        const configPath = '.agents-reverse-engineer.yaml';
+        if (existsSync(configPath)) {
+          const config = readFileSync(configPath, 'utf-8');
+          if (config.includes('hook_enabled: false')) return;
+        }
+
+        // Check git status - skip if no changes
+        try {
+          const status = execSync('git status --porcelain', { encoding: 'utf-8' });
+          if (!status.trim()) return;
+        } catch {
+          // Not a git repo or git not available - exit silently
+          return;
+        }
+
+        // Run update in background (don't block session close)
+        const child = spawn('npx', ['agents-reverse-engineer@latest', 'update', '--quiet'], {
+          stdio: 'ignore',
+          detached: true,
+        });
+        child.unref();
+      },
+    },
+  };
+};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agents-reverse-engineer",
-  "version": "0.4.1",
+  "version": "0.4.3",
   "description": "CLI tool for reverse-engineering codebase documentation for AI agents",
   "type": "module",
   "bin": {