agents-reverse-engineer 0.2.12 → 0.3.0

package/README.md

@@ -41,7 +41,7 @@ AI coding assistants are powerful, but they don't know your codebase. Every sess
 
 - **`.sum` files** — Per-file summaries with purpose, exports, dependencies
 - **`AGENTS.md`** — Per-directory overviews with file organization (standard format)
-- **`CLAUDE.md`** — Project entry point for Claude Code
+- **`CLAUDE.md`** / **`GEMINI.md`** / **`OPENCODE.md`** — Runtime-specific project entry points
 - **`ARCHITECTURE.md`** — System design overview for complex projects
 - **`STACK.md`** — Technology stack from package.json
 
@@ -172,7 +172,7 @@ Your AI assistant executes the plan:
 
 1. **File Analysis** — Creates `.sum` file for each source file
 2. **Directory Docs** — Creates `AGENTS.md` for each directory
-3. **Root Docs** — Creates `CLAUDE.md`, `ARCHITECTURE.md`, `STACK.md`
+3. **Root Docs** — Creates `CLAUDE.md`, `GEMINI.md`, `OPENCODE.md`, `ARCHITECTURE.md`, `STACK.md`
 
 ---
 
@@ -253,6 +253,8 @@ Directory overview with:
 ### Root Documents
 
 - **`CLAUDE.md`** — Project entry point for Claude Code (auto-loaded)
+- **`GEMINI.md`** — Project entry point for Gemini CLI
+- **`OPENCODE.md`** — Project entry point for OpenCode
 - **`AGENTS.md`** — Root directory overview (universal format)
 - **`ARCHITECTURE.md`** — System design overview (generated for complex projects)
 - **`STACK.md`** — Technology stack from package.json

package/dist/cli/update.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../src/cli/update.ts"],"names":[],"mappings":"AAuBA;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,+DAA+D;IAC/D,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,oCAAoC;IACpC,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,2BAA2B;IAC3B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,iDAAiD;IACjD,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,4BAA4B;IAC5B,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAkND;;;;;;;;;;GAUG;AACH,wBAAsB,aAAa,CACjC,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,IAAI,CAAC,CA0Hf"}
+{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../src/cli/update.ts"],"names":[],"mappings":"AAuBA;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,+DAA+D;IAC/D,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,oCAAoC;IACpC,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,2BAA2B;IAC3B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,iDAAiD;IACjD,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,4BAA4B;IAC5B,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAsND;;;;;;;;;;GAUG;AACH,wBAAsB,aAAa,CACjC,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,IAAI,CAAC,CAmHf"}

package/dist/cli/update.js

@@ -51,7 +51,6 @@ function formatPlan(plan, verbose) {
         lines.push('');
     }
     else {
-        lines.push(`Base commit: ${pc.dim(plan.baseCommit.slice(0, 7))}`);
         lines.push(`Current commit: ${pc.dim(plan.currentCommit.slice(0, 7))}`);
         lines.push('');
     }
@@ -118,6 +117,8 @@ async function analyzeFile(projectRoot, change, verbose) {
         // Read file content
         const content = await readFile(filePath, 'utf-8');
         const tokens = countTokens(content);
+        // Compute content hash for change detection
+        const contentHash = await computeContentHash(filePath);
         // Detect file type and build prompt
         const fileType = detectFileType(filePath, content);
         const prompt = buildPrompt({
@@ -139,6 +140,7 @@ async function analyzeFile(projectRoot, change, verbose) {
             },
             fileType,
             generatedAt: new Date().toISOString(),
+            contentHash,
         };
         // Write .sum file
         await writeSumFile(filePath, sumContent);
@@ -149,6 +151,7 @@ async function analyzeFile(projectRoot, change, verbose) {
             path: change.path,
             success: true,
             tokensUsed: tokens,
+            contentHash,
         };
     }
     catch (error) {
@@ -236,11 +239,7 @@ export async function updateCommand(targetPath, options) {
         if (plan.filesToAnalyze.length === 0 &&
             plan.cleanup.deletedSumFiles.length === 0 &&
             plan.cleanup.deletedAgentsMd.length === 0) {
-            const lastRun = await orchestrator.getLastRun();
-            if (lastRun) {
-                console.log(pc.dim(`Last run: ${lastRun.completed_at}`));
-                console.log(pc.dim(`Commit: ${lastRun.commit_hash.slice(0, 7)}`));
-            }
+            console.log(pc.green('All files are up to date.'));
             return;
         }
         if (options.dryRun) {
@@ -257,14 +256,13 @@ export async function updateCommand(targetPath, options) {
             console.log(pc.bold('=== Analyzing Changed Files ==='));
             for (const change of plan.filesToAnalyze) {
                 const result = await analyzeFile(absolutePath, change, verbose);
-                if (result.success) {
+                if (result.success && result.contentHash) {
                     filesAnalyzed++;
                     totalTokens += result.tokensUsed;
                     // Update state for this file
-                    const contentHash = await computeContentHash(path.join(absolutePath, change.path));
-                    await orchestrator.recordFileAnalyzed(change.path, contentHash, plan.currentCommit);
+                    await orchestrator.recordFileAnalyzed(change.path, result.contentHash, plan.currentCommit);
                 }
-                else {
+                else if (!result.success) {
                     filesFailed++;
                 }
             }

package/dist/cli/update.js.map

@@ -1 +1 @@
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package/dist/config/defaults.d.ts

@@ -5,12 +5,12 @@
  * Default vendor directories to exclude from analysis.
  * These are typically package managers, build outputs, or version control directories.
  */
-export declare const DEFAULT_VENDOR_DIRS: readonly ["node_modules", "vendor", ".git", "dist", "build", "__pycache__", ".next", "venv", ".venv", "target", ".cargo", ".gradle", ".planning", ".claude", ".opencode"];
+export declare const DEFAULT_VENDOR_DIRS: readonly ["node_modules", "vendor", ".git", "dist", "build", "__pycache__", ".next", "venv", ".venv", "target", ".cargo", ".gradle", ".agents-reverse-engineer", ".planning", ".claude", ".opencode", ".gemini"];
 /**
  * Default binary file extensions to exclude from analysis.
  * These files cannot be meaningfully analyzed as text.
  */
-export declare const DEFAULT_BINARY_EXTENSIONS: readonly [".png", ".jpg", ".jpeg", ".gif", ".bmp", ".ico", ".webp", ".zip", ".tar", ".gz", ".rar", ".7z", ".exe", ".dll", ".so", ".dylib", ".mp3", ".mp4", ".wav", ".pdf", ".woff", ".woff2", ".ttf", ".eot", ".class", ".pyc"];
+export declare const DEFAULT_BINARY_EXTENSIONS: readonly [".png", ".jpg", ".jpeg", ".gif", ".bmp", ".ico", ".webp", ".zip", ".tar", ".gz", ".rar", ".7z", ".exe", ".dll", ".so", ".dylib", ".mp3", ".mp4", ".wav", ".pdf", ".woff", ".woff2", ".ttf", ".eot", ".class", ".pyc", ".gitignore", ".gitattributes", ".gitkeep", ".env", ".log", "AGENTS.md", "CLAUDE.md", "OPENCODE.md", "GEMINI.md"];
 /**
  * Default maximum file size in bytes (1MB).
  * Files larger than this will be skipped with a warning.
@@ -23,8 +23,8 @@ export declare const DEFAULT_MAX_FILE_SIZE: number;
 export declare const DEFAULT_CONFIG: {
     readonly exclude: {
         readonly patterns: string[];
-        readonly vendorDirs: readonly ["node_modules", "vendor", ".git", "dist", "build", "__pycache__", ".next", "venv", ".venv", "target", ".cargo", ".gradle", ".planning", ".claude", ".opencode"];
-        readonly binaryExtensions: readonly [".png", ".jpg", ".jpeg", ".gif", ".bmp", ".ico", ".webp", ".zip", ".tar", ".gz", ".rar", ".7z", ".exe", ".dll", ".so", ".dylib", ".mp3", ".mp4", ".wav", ".pdf", ".woff", ".woff2", ".ttf", ".eot", ".class", ".pyc"];
+        readonly vendorDirs: readonly ["node_modules", "vendor", ".git", "dist", "build", "__pycache__", ".next", "venv", ".venv", "target", ".cargo", ".gradle", ".agents-reverse-engineer", ".planning", ".claude", ".opencode", ".gemini"];
+        readonly binaryExtensions: readonly [".png", ".jpg", ".jpeg", ".gif", ".bmp", ".ico", ".webp", ".zip", ".tar", ".gz", ".rar", ".7z", ".exe", ".dll", ".so", ".dylib", ".mp3", ".mp4", ".wav", ".pdf", ".woff", ".woff2", ".ttf", ".eot", ".class", ".pyc", ".gitignore", ".gitattributes", ".gitkeep", ".env", ".log", "AGENTS.md", "CLAUDE.md", "OPENCODE.md", "GEMINI.md"];
     };
     readonly options: {
         readonly followSymlinks: false;

package/dist/config/defaults.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH;;;GAGG;AACH,eAAO,MAAM,mBAAmB,2KAiBtB,CAAC;AAEX;;;GAGG;AACH,eAAO,MAAM,yBAAyB,iOAkC5B,CAAC;AAEX;;;GAGG;AACH,eAAO,MAAM,qBAAqB,QAAc,CAAC;AAEjD;;;GAGG;AACH,eAAO,MAAM,cAAc;;2BAEP,MAAM,EAAE;;;;;;;;;;;;CAYlB,CAAC"}
+{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH;;;GAGG;AACH,eAAO,MAAM,mBAAmB,kNAmBtB,CAAC;AAEX;;;GAGG;AACH,eAAO,MAAM,yBAAyB,mVA+C5B,CAAC;AAEX;;;GAGG;AACH,eAAO,MAAM,qBAAqB,QAAc,CAAC;AAEjD;;;GAGG;AACH,eAAO,MAAM,cAAc;;2BAEP,MAAM,EAAE;;;;;;;;;;;;CAYlB,CAAC"}

package/dist/config/defaults.js

@@ -19,9 +19,11 @@ export const DEFAULT_VENDOR_DIRS = [
     '.cargo',
     '.gradle',
     // AI assistant tooling directories
+    '.agents-reverse-engineer',
     '.planning',
     '.claude',
     '.opencode',
+    '.gemini',
 ];
 /**
  * Default binary file extensions to exclude from analysis.
@@ -61,6 +63,19 @@ export const DEFAULT_BINARY_EXTENSIONS = [
     // Compiled
     '.class',
     '.pyc',
+    // Project
+    '.gitignore',
+    '.gitattributes',
+    '.gitkeep',
+    // Configuration
+    '.env',
+    // Logs
+    '.log',
+    // AI assistant
+    'AGENTS.md',
+    'CLAUDE.md',
+    'OPENCODE.md',
+    'GEMINI.md',
 ];
 /**
  * Default maximum file size in bytes (1MB).

package/dist/config/defaults.js.map

@@ -1 +1 @@
-{"version":3,"file":"defaults.js","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH;;;GAGG;AACH,MAAM,CAAC,MAAM,mBAAmB,GAAG;IACjC,cAAc;IACd,QAAQ;IACR,MAAM;IACN,MAAM;IACN,OAAO;IACP,aAAa;IACb,OAAO;IACP,MAAM;IACN,OAAO;IACP,QAAQ;IACR,QAAQ;IACR,SAAS;IACT,mCAAmC;IACnC,WAAW;IACX,SAAS;IACT,WAAW;CACH,CAAC;AAEX;;;GAGG;AACH,MAAM,CAAC,MAAM,yBAAyB,GAAG;IACvC,SAAS;IACT,MAAM;IACN,MAAM;IACN,OAAO;IACP,MAAM;IACN,MAAM;IACN,MAAM;IACN,OAAO;IACP,WAAW;IACX,MAAM;IACN,MAAM;IACN,KAAK;IACL,MAAM;IACN,KAAK;IACL,cAAc;IACd,MAAM;IACN,MAAM;IACN,KAAK;IACL,QAAQ;IACR,QAAQ;IACR,MAAM;IACN,MAAM;IACN,MAAM;IACN,YAAY;IACZ,MAAM;IACN,QAAQ;IACR,OAAO;IACP,QAAQ;IACR,MAAM;IACN,MAAM;IACN,WAAW;IACX,QAAQ;IACR,MAAM;CACE,CAAC;AAEX;;;GAGG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAAG,IAAI,GAAG,IAAI,CAAC;AAEjD;;;GAGG;AACH,MAAM,CAAC,MAAM,cAAc,GAAG;IAC5B,OAAO,EAAE;QACP,QAAQ,EAAE,EAAc;QACxB,UAAU,EAAE,CAAC,GAAG,mBAAmB,CAAC;QACpC,gBAAgB,EAAE,CAAC,GAAG,yBAAyB,CAAC;KACjD;IACD,OAAO,EAAE;QACP,cAAc,EAAE,KAAK;QACrB,WAAW,EAAE,qBAAqB;KACnC;IACD,MAAM,EAAE;QACN,MAAM,EAAE,IAAI;QACZ,OAAO,EAAE,IAAI;KACd;CACO,CAAC"}
+{"version":3,"file":"defaults.js","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH;;;GAGG;AACH,MAAM,CAAC,MAAM,mBAAmB,GAAG;IACjC,cAAc;IACd,QAAQ;IACR,MAAM;IACN,MAAM;IACN,OAAO;IACP,aAAa;IACb,OAAO;IACP,MAAM;IACN,OAAO;IACP,QAAQ;IACR,QAAQ;IACR,SAAS;IACT,mCAAmC;IACnC,0BAA0B;IAC1B,WAAW;IACX,SAAS;IACT,WAAW;IACX,SAAS;CACD,CAAC;AAEX;;;GAGG;AACH,MAAM,CAAC,MAAM,yBAAyB,GAAG;IACvC,SAAS;IACT,MAAM;IACN,MAAM;IACN,OAAO;IACP,MAAM;IACN,MAAM;IACN,MAAM;IACN,OAAO;IACP,WAAW;IACX,MAAM;IACN,MAAM;IACN,KAAK;IACL,MAAM;IACN,KAAK;IACL,cAAc;IACd,MAAM;IACN,MAAM;IACN,KAAK;IACL,QAAQ;IACR,QAAQ;IACR,MAAM;IACN,MAAM;IACN,MAAM;IACN,YAAY;IACZ,MAAM;IACN,QAAQ;IACR,OAAO;IACP,QAAQ;IACR,MAAM;IACN,MAAM;IACN,WAAW;IACX,QAAQ;IACR,MAAM;IACN,UAAU;IACV,YAAY;IACZ,gBAAgB;IAChB,UAAU;IACV,gBAAgB;IAChB,MAAM;IACN,OAAO;IACP,MAAM;IACN,eAAe;IACf,WAAW;IACX,WAAW;IACX,aAAa;IACb,WAAW;CACH,CAAC;AAEX;;;GAGG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAAG,IAAI,GAAG,IAAI,CAAC;AAEjD;;;GAGG;AACH,MAAM,CAAC,MAAM,cAAc,GAAG;IAC5B,OAAO,EAAE;QACP,QAAQ,EAAE,EAAc;QACxB,UAAU,EAAE,CAAC,GAAG,mBAAmB,CAAC;QACpC,gBAAgB,EAAE,CAAC,GAAG,yBAAyB,CAAC;KACjD;IACD,OAAO,EAAE;QACP,cAAc,EAAE,KAAK;QACrB,WAAW,EAAE,qBAAqB;KACnC;IACD,MAAM,EAAE;QACN,MAAM,EAAE,IAAI;QACZ,OAAO,EAAE,IAAI;KACd;CACO,CAAC"}

package/dist/generation/writers/agents-md.d.ts

@@ -46,8 +46,11 @@ export interface DirectoryDoc {
 }
 /**
  * Build AGENTS.md content from directory documentation.
+ *
+ * @param doc - Directory documentation
+ * @param hasLocalFile - Whether AGENTS.local.md exists (user-defined content)
  */
-export declare function buildAgentsMd(doc: DirectoryDoc): string;
+export declare function buildAgentsMd(doc: DirectoryDoc, hasLocalFile?: boolean): string;
 /**
  * Build directory documentation from .sum files.
  */
@@ -55,6 +58,9 @@ export declare function buildDirectoryDoc(dirPath: string, projectRoot: string):
 /**
  * Write AGENTS.md for a directory.
  *
+ * If a user-defined AGENTS.md exists (not generated by us), it will be
+ * preserved as AGENTS.local.md and referenced in the generated file.
+ *
  * @param dirPath - Directory to write AGENTS.md for
  * @param projectRoot - Project root for relative paths
  * @returns Path to written AGENTS.md

package/dist/generation/writers/agents-md.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"agents-md.d.ts","sourceRoot":"","sources":["../../../src/generation/writers/agents-md.ts"],"names":[],"mappings":"AAIA;;GAEG;AACH,MAAM,WAAW,OAAO;IACtB,gBAAgB;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,uCAAuC;IACvC,WAAW,EAAE,MAAM,CAAC;IACpB,0DAA0D;IAC1D,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAED;;GAEG;AACH,MAAM,WAAW,SAAS;IACxB,qCAAqC;IACrC,OAAO,EAAE,MAAM,CAAC;IAChB,0BAA0B;IAC1B,KAAK,EAAE,OAAO,EAAE,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,qBAAqB;IACrB,IAAI,EAAE,MAAM,CAAC;IACb,uDAAuD;IACvD,OAAO,EAAE,MAAM,CAAC;CACjB;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,gDAAgD;IAChD,IAAI,EAAE,MAAM,CAAC;IACb,4BAA4B;IAC5B,WAAW,EAAE,MAAM,CAAC;IACpB,+BAA+B;IAC/B,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,oCAAoC;IACpC,cAAc,EAAE,aAAa,EAAE,CAAC;IAChC,iDAAiD;IACjD,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,6CAA6C;IAC7C,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,YAAY,GAAG,MAAM,CAqDvD;AA+GD;;GAEG;AACH,wBAAsB,iBAAiB,CACrC,OAAO,EAAE,MAAM,EACf,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,YAAY,CAAC,CAyEvB;AAED;;;;;;GAMG;AACH,wBAAsB,aAAa,CACjC,OAAO,EAAE,MAAM,EACf,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,MAAM,CAAC,CASjB"}
+{"version":3,"file":"agents-md.d.ts","sourceRoot":"","sources":["../../../src/generation/writers/agents-md.ts"],"names":[],"mappings":"AAOA;;GAEG;AACH,MAAM,WAAW,OAAO;IACtB,gBAAgB;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,uCAAuC;IACvC,WAAW,EAAE,MAAM,CAAC;IACpB,0DAA0D;IAC1D,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAED;;GAEG;AACH,MAAM,WAAW,SAAS;IACxB,qCAAqC;IACrC,OAAO,EAAE,MAAM,CAAC;IAChB,0BAA0B;IAC1B,KAAK,EAAE,OAAO,EAAE,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,qBAAqB;IACrB,IAAI,EAAE,MAAM,CAAC;IACb,uDAAuD;IACvD,OAAO,EAAE,MAAM,CAAC;CACjB;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,gDAAgD;IAChD,IAAI,EAAE,MAAM,CAAC;IACb,4BAA4B;IAC5B,WAAW,EAAE,MAAM,CAAC;IACpB,+BAA+B;IAC/B,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,oCAAoC;IACpC,cAAc,EAAE,aAAa,EAAE,CAAC;IAChC,iDAAiD;IACjD,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,6CAA6C;IAC7C,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;;GAKG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,YAAY,EAAE,YAAY,GAAE,OAAe,GAAG,MAAM,CA+DtF;AA+GD;;GAEG;AACH,wBAAsB,iBAAiB,CACrC,OAAO,EAAE,MAAM,EACf,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,YAAY,CAAC,CAyEvB;AA0BD;;;;;;;;;GASG;AACH,wBAAsB,aAAa,CACjC,OAAO,EAAE,MAAM,EACf,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,MAAM,CAAC,CA0BjB"}

package/dist/generation/writers/agents-md.js

@@ -1,12 +1,25 @@
-import { writeFile, readdir, stat, mkdir } from 'node:fs/promises';
+import { writeFile, readFile, readdir, stat, mkdir, rename } from 'node:fs/promises';
 import * as path from 'node:path';
 import { readSumFile, getSumPath } from './sum.js';
+/** Marker comment to identify generated AGENTS.md files */
+const GENERATED_MARKER = '<!-- Generated by agents-reverse-engineer -->';
 /**
  * Build AGENTS.md content from directory documentation.
+ *
+ * @param doc - Directory documentation
+ * @param hasLocalFile - Whether AGENTS.local.md exists (user-defined content)
  */
-export function buildAgentsMd(doc) {
+export function buildAgentsMd(doc, hasLocalFile = false) {
     const sections = [];
     const dirName = path.basename(doc.path) || 'Project Root';
+    // Generated marker (first line)
+    sections.push(GENERATED_MARKER);
+    sections.push('');
+    // Reference to user-defined local file if it exists
+    if (hasLocalFile) {
+        sections.push('> **Note:** This directory has additional documentation in [AGENTS.local.md](./AGENTS.local.md)');
+        sections.push('');
+    }
     // Header
     sections.push(`# ${dirName}\n`);
     if (doc.description) {
@@ -217,17 +230,59 @@ export async function buildDirectoryDoc(dirPath, projectRoot) {
     }
     return doc;
 }
+/**
+ * Check if an AGENTS.md file was generated by us (contains marker).
+ */
+async function isGeneratedAgentsMd(filePath) {
+    try {
+        const content = await readFile(filePath, 'utf-8');
+        return content.includes(GENERATED_MARKER);
+    }
+    catch {
+        return false;
+    }
+}
+/**
+ * Check if AGENTS.local.md exists in a directory.
+ */
+async function hasLocalAgentsMd(dirPath) {
+    try {
+        await stat(path.join(dirPath, 'AGENTS.local.md'));
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
 /**
  * Write AGENTS.md for a directory.
  *
+ * If a user-defined AGENTS.md exists (not generated by us), it will be
+ * preserved as AGENTS.local.md and referenced in the generated file.
+ *
  * @param dirPath - Directory to write AGENTS.md for
  * @param projectRoot - Project root for relative paths
  * @returns Path to written AGENTS.md
  */
 export async function writeAgentsMd(dirPath, projectRoot) {
-    const doc = await buildDirectoryDoc(dirPath, projectRoot);
-    const content = buildAgentsMd(doc);
     const agentsPath = path.join(dirPath, 'AGENTS.md');
+    const localPath = path.join(dirPath, 'AGENTS.local.md');
+    // Check if existing AGENTS.md is user-defined (not generated by us)
+    let hasLocalFile = await hasLocalAgentsMd(dirPath);
+    try {
+        const existingIsGenerated = await isGeneratedAgentsMd(agentsPath);
+        if (!existingIsGenerated) {
+            // User-defined AGENTS.md exists - preserve it
+            await rename(agentsPath, localPath);
+            hasLocalFile = true;
+        }
+    }
+    catch {
+        // No existing AGENTS.md - that's fine
+    }
+    // Build and write the generated AGENTS.md
+    const doc = await buildDirectoryDoc(dirPath, projectRoot);
+    const content = buildAgentsMd(doc, hasLocalFile);
     await mkdir(path.dirname(agentsPath), { recursive: true });
     await writeFile(agentsPath, content, 'utf-8');
     return agentsPath;

package/dist/generation/writers/agents-md.js.map

@@ -1 +1 @@
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package/dist/generation/writers/claude-md.d.ts

@@ -1,10 +1,14 @@
 /**
  * Write CLAUDE.md at the project root.
  *
+ * Only writes if Claude Code is installed locally (`.claude` directory exists).
+ * If a user-defined CLAUDE.md exists (not generated by us), it will be
+ * preserved as CLAUDE.local.md and referenced in the generated file.
+ *
  * @param projectRoot - Project root directory
- * @returns Path to written CLAUDE.md
+ * @returns Path to written CLAUDE.md, or null if Claude Code is not installed
  */
-export declare function writeClaudeMd(projectRoot: string): Promise<string>;
+export declare function writeClaudeMd(projectRoot: string): Promise<string | null>;
 /**
  * Get the content that would be written to CLAUDE.md.
  * Useful for previewing without writing.

package/dist/generation/writers/claude-md.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"claude-md.d.ts","sourceRoot":"","sources":["../../../src/generation/writers/claude-md.ts"],"names":[],"mappings":"AAgBA;;;;;GAKG;AACH,wBAAsB,aAAa,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAIxE;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,IAAI,MAAM,CAE3C"}
+{"version":3,"file":"claude-md.d.ts","sourceRoot":"","sources":["../../../src/generation/writers/claude-md.ts"],"names":[],"mappings":"AA4DA;;;;;;;;;GASG;AACH,wBAAsB,aAAa,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CA4B/E;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,IAAI,MAAM,CAE3C"}

package/dist/generation/writers/claude-md.js

@@ -1,26 +1,89 @@
-import { writeFile } from 'node:fs/promises';
+import { writeFile, readFile, stat, rename } from 'node:fs/promises';
 import * as path from 'node:path';
+import { isRuntimeInstalledLocally } from '../../installer/paths.js';
+/** Marker comment to identify generated CLAUDE.md files */
+const GENERATED_MARKER = '<!-- Generated by agents-reverse-engineer -->';
 /**
  * Standard CLAUDE.md content - simple pointer to AGENTS.md.
  *
  * Per CONTEXT.md: "Simple pointer to AGENTS.md for Anthropic compatibility"
  */
-const CLAUDE_MD_CONTENT = `# CLAUDE.md
-
-See [AGENTS.md](./AGENTS.md) for codebase documentation.
-
-This file exists for Anthropic compatibility. The actual documentation
-is maintained in AGENTS.md files throughout the codebase.
-`;
+function buildClaudeMdContent(hasLocalFile) {
+    const sections = [];
+    // Generated marker (first line)
+    sections.push(GENERATED_MARKER);
+    sections.push('');
+    // Reference to user-defined local file if it exists
+    if (hasLocalFile) {
+        sections.push('> **Note:** This project has additional documentation in [CLAUDE.local.md](./CLAUDE.local.md)');
+        sections.push('');
+    }
+    sections.push('# CLAUDE.md');
+    sections.push('');
+    sections.push('See [AGENTS.md](./AGENTS.md) for codebase documentation.');
+    sections.push('');
+    sections.push('This file exists for Anthropic compatibility. The actual documentation');
+    sections.push('is maintained in AGENTS.md files throughout the codebase.');
+    sections.push('');
+    return sections.join('\n');
+}
+/**
+ * Check if a file was generated by us (contains marker).
+ */
+async function isGeneratedFile(filePath) {
+    try {
+        const content = await readFile(filePath, 'utf-8');
+        return content.includes(GENERATED_MARKER);
+    }
+    catch {
+        return false;
+    }
+}
+/**
+ * Check if a local file exists.
+ */
+async function hasLocalFile(localPath) {
+    try {
+        await stat(localPath);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
 /**
  * Write CLAUDE.md at the project root.
  *
+ * Only writes if Claude Code is installed locally (`.claude` directory exists).
+ * If a user-defined CLAUDE.md exists (not generated by us), it will be
+ * preserved as CLAUDE.local.md and referenced in the generated file.
+ *
  * @param projectRoot - Project root directory
- * @returns Path to written CLAUDE.md
+ * @returns Path to written CLAUDE.md, or null if Claude Code is not installed
  */
 export async function writeClaudeMd(projectRoot) {
+    // Only generate if Claude Code is installed locally
+    const isInstalled = await isRuntimeInstalledLocally('claude', projectRoot);
+    if (!isInstalled) {
+        return null;
+    }
     const claudePath = path.join(projectRoot, 'CLAUDE.md');
-    await writeFile(claudePath, CLAUDE_MD_CONTENT, 'utf-8');
+    const localPath = path.join(projectRoot, 'CLAUDE.local.md');
+    // Check if existing CLAUDE.md is user-defined (not generated by us)
+    let hasLocal = await hasLocalFile(localPath);
+    try {
+        const existingIsGenerated = await isGeneratedFile(claudePath);
+        if (!existingIsGenerated) {
+            // User-defined CLAUDE.md exists - preserve it
+            await rename(claudePath, localPath);
+            hasLocal = true;
+        }
+    }
+    catch {
+        // No existing CLAUDE.md - that's fine
+    }
+    const content = buildClaudeMdContent(hasLocal);
+    await writeFile(claudePath, content, 'utf-8');
     return claudePath;
 }
 /**
@@ -28,6 +91,6 @@ export async function writeClaudeMd(projectRoot) {
  * Useful for previewing without writing.
  */
 export function getClaudeMdContent() {
-    return CLAUDE_MD_CONTENT;
+    return buildClaudeMdContent(false);
 }
 //# sourceMappingURL=claude-md.js.map

package/dist/generation/writers/claude-md.js.map

@@ -1 +1 @@
-{"version":3,"file":"claude-md.js","sourceRoot":"","sources":["../../../src/generation/writers/claude-md.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAC7C,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAElC;;;;GAIG;AACH,MAAM,iBAAiB,GAAG;;;;;;CAMzB,CAAC;AAEF;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,WAAmB;IACrD,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;IACvD,MAAM,SAAS,CAAC,UAAU,EAAE,iBAAiB,EAAE,OAAO,CAAC,CAAC;IACxD,OAAO,UAAU,CAAC;AACpB,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,kBAAkB;IAChC,OAAO,iBAAiB,CAAC;AAC3B,CAAC"}
+{"version":3,"file":"claude-md.js","sourceRoot":"","sources":["../../../src/generation/writers/claude-md.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AACrE,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,yBAAyB,EAAE,MAAM,0BAA0B,CAAC;AAErE,2DAA2D;AAC3D,MAAM,gBAAgB,GAAG,+CAA+C,CAAC;AAEzE;;;;GAIG;AACH,SAAS,oBAAoB,CAAC,YAAqB;IACjD,MAAM,QAAQ,GAAa,EAAE,CAAC;IAE9B,gCAAgC;IAChC,QAAQ,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;IAChC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAElB,oDAAoD;IACpD,IAAI,YAAY,EAAE,CAAC;QACjB,QAAQ,CAAC,IAAI,CAAC,+FAA+F,CAAC,CAAC;QAC/G,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpB,CAAC;IAED,QAAQ,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;IAC7B,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAClB,QAAQ,CAAC,IAAI,CAAC,0DAA0D,CAAC,CAAC;IAC1E,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAClB,QAAQ,CAAC,IAAI,CAAC,wEAAwE,CAAC,CAAC;IACxF,QAAQ,CAAC,IAAI,CAAC,2DAA2D,CAAC,CAAC;IAC3E,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAElB,OAAO,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC7B,CAAC;AAED;;GAEG;AACH,KAAK,UAAU,eAAe,CAAC,QAAgB;IAC7C,IAAI,CAAC;QACH,MAAM,OAAO,GAAG,MAAM,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QAClD,OAAO,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAC,CAAC;IAC5C,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED;;GAEG;AACH,KAAK,UAAU,YAAY,CAAC,SAAiB;IAC3C,IAAI,CAAC;QACH,MAAM,IAAI,CAAC,SAAS,CAAC,CAAC;QACtB,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,WAAmB;IACrD,oDAAoD;IACpD,MAAM,WAAW,GAAG,MAAM,yBAAyB,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAC;IAC3E,IAAI,CAAC,WAAW,EAAE,CAAC;QACjB,OAAO,IAAI,CAAC;IACd,CAAC;IAED,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;IACvD,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,iBAAiB,CAAC,CAAC;IAE5D,oEAAoE;IACpE,IAAI,QAAQ,GAAG,MAAM,YAAY,CAAC,SAAS,CAAC,CAAC;IAE7C,IAAI,CAAC;QACH,MAAM,mBAAmB,GAAG,MAAM,eAAe,CAAC,UAAU,CAAC,CAAC;QAC9D,IAAI,CAAC,mBAAmB,EAAE,CAAC;YACzB,8CAA8C;YAC9C,MAAM,MAAM,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;YACpC,QAAQ,GAAG,IAAI,CAAC;QAClB,CAAC;IACH,CAAC;IAAC,MAAM,CAAC;QACP,sCAAsC;IACxC,CAAC;IAED,MAAM,OAAO,GAAG,oBAAoB,CAAC,QAAQ,CAAC,CAAC;IAC/C,MAAM,SAAS,CAAC,UAAU,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IAE9C,OAAO,UAAU,CAAC;AACpB,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,kBAAkB;IAChC,OAAO,oBAAoB,CAAC,KAAK,CAAC,CAAC;AACrC,CAAC"}

package/dist/generation/writers/gemini-md.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Write GEMINI.md at the project root.
+ *
+ * Only writes if Gemini CLI is installed locally (`.gemini` directory exists).
+ * If a user-defined GEMINI.md exists (not generated by us), it will be
+ * preserved as GEMINI.local.md and referenced in the generated file.
+ *
+ * @param projectRoot - Project root directory
+ * @returns Path to written GEMINI.md, or null if Gemini CLI is not installed
+ */
+export declare function writeGeminiMd(projectRoot: string): Promise<string | null>;
+/**
+ * Get the content that would be written to GEMINI.md.
+ * Useful for previewing without writing.
+ */
+export declare function getGeminiMdContent(): string;
+//# sourceMappingURL=gemini-md.d.ts.map

package/dist/generation/writers/gemini-md.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"gemini-md.d.ts","sourceRoot":"","sources":["../../../src/generation/writers/gemini-md.ts"],"names":[],"mappings":"AA4DA;;;;;;;;;GASG;AACH,wBAAsB,aAAa,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CA4B/E;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,IAAI,MAAM,CAE3C"}