agentopology 0.7.0 → 0.9.0

package/dist/__tests__/e2e/unknown-names.test.js

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+/**
+ * Nothing written in a .at file vanishes in silence (N23, N24).
+ *
+ * Measured on 0.8.0 (harness-venture, lane B, 2026-11-08): in 15 of 17 probe
+ * cases an unknown field or block was gone from the AST while validate printed
+ * "All validation rules passed" and exited 0; scaffold dropped it too. Only an
+ * unknown `on-timeout` value was caught (V59). Each case below is the same
+ * small topology with one thing added. V102 now names every name the parser
+ * does not read; V103 checks `behavior`.
+ */
+import { describe, it, expect } from "vitest";
+import { spawnSync } from "node:child_process";
+import * as fs from "node:fs";
+import * as os from "node:os";
+import { resolve, dirname, join } from "node:path";
+import { fileURLToPath } from "node:url";
+import { parse } from "../../parser/index.js";
+import { validate } from "../../parser/validator.js";
+import { topics } from "../../docs/content.js";
+const CLI = resolve(dirname(fileURLToPath(import.meta.url)), "../../../dist/cli/index.js");
+const BASELINE = `topology probe : [pipeline] {
+  meta {
+    version: "1.0.0"
+    description: "Probe baseline"
+  }
+
+  orchestrator {
+    model: sonnet
+    handles: [b]
+  }
+
+  agent a {
+    model: sonnet
+    description: "Writes the draft"
+    produces: [r]
+    prompt {
+      Write the draft.
+    }
+  }
+
+  action b {
+    kind: inline
+    description: "Collect the draft"
+  }
+
+  human h {
+    description: "Approves the draft"
+  }
+
+  gates {
+    gate g {
+      after: a
+      before: b
+      run: "scripts/check.sh"
+      on-fail: halt
+    }
+  }
+
+  hooks {
+    hook k {
+      on: Stop
+      run: "scripts/stop.sh"
+    }
+  }
+
+  schedule {
+    job j {
+      every: 1h
+      agent: a
+    }
+  }
+
+  artifacts {
+    artifact r {
+      type: markdown
+      path: "out/r.md"
+    }
+  }
+
+  flow {
+    a -> b -> h
+  }
+}
+`;
+/** Where each kind of addition goes: the line it is written after. */
+const ANCHOR = {
+    agent: `    description: "Writes the draft"\n`,
+    action: `    description: "Collect the draft"\n`,
+    human: `    description: "Approves the draft"\n`,
+    gate: `      on-fail: halt\n`,
+    hook: `      run: "scripts/stop.sh"\n`,
+    job: `      agent: a\n`,
+    artifact: `      path: "out/r.md"\n`,
+    meta: `    description: "Probe baseline"\n`,
+    top: `  flow {\n`,
+};
+function withLine(where, text) {
+    const anchor = ANCHOR[where];
+    if (!BASELINE.includes(anchor))
+        throw new Error(`anchor missing: ${where}`);
+    if (where === "top")
+        return BASELINE.replace(anchor, `${text}\n\n${anchor}`);
+    const indent = anchor.match(/^ */)[0];
+    return BASELINE.replace(anchor, anchor + text.split("\n").map((l) => indent + l).join("\n") + "\n");
+}
+const CASES = [
+    { id: "C01", what: "unknown field on an agent", source: withLine("agent", "zzmarker: zzAAA101"), name: "zzmarker", marker: "zzAAA101", block: `agent "a"` },
+    { id: "C02", what: "misspelled field on an agent", source: withLine("agent", "modle: opus"), name: "modle", marker: "zzNONE", block: `agent "a"` },
+    { id: "C03", what: "unknown field on an action", source: withLine("action", "zzfield: zzAAA103"), name: "zzfield", marker: "zzAAA103", block: `action "b"` },
+    { id: "C04", what: "unknown field on a human", source: withLine("human", "zzfield: zzAAA104"), name: "zzfield", marker: "zzAAA104", block: `human "h"` },
+    { id: "C05", what: "unknown field on a gate", source: withLine("gate", "zzfield: zzAAA105"), name: "zzfield", marker: "zzAAA105", block: `gate "g"` },
+    { id: "C06", what: "unknown field on a hook", source: withLine("hook", "zzfield: zzAAA106"), name: "zzfield", marker: "zzAAA106", block: `hook "k"` },
+    { id: "C07", what: "unknown field on a schedule job", source: withLine("job", "zzfield: zzAAA107"), name: "zzfield", marker: "zzAAA107", block: `job "j"` },
+    { id: "C08", what: "unknown field on an artifact", source: withLine("artifact", "zzfield: zzAAA108"), name: "zzfield", marker: "zzAAA108", block: `artifact "r"` },
+    { id: "C09", what: "unknown field in meta", source: withLine("meta", "zzfield: zzAAA109"), name: "zzfield", marker: "zzAAA109", block: `"meta"` },
+    { id: "C10", what: "unknown top-level block", source: withLine("top", "  zzblock {\n    x: zzAAA110\n  }"), name: "zzblock", marker: "zzAAA110", block: "the topology" },
+    { id: "C11", what: "unknown named top-level block", source: withLine("top", "  contract c1 {\n    clause q1 {\n      text: \"zzAAA111\"\n    }\n  }"), name: "contract", marker: "zzAAA111", block: "the topology" },
+    { id: "C12", what: "unknown block nested in an agent", source: withLine("agent", "zzblock {\n  x: zzAAA112\n}"), name: "zzblock", marker: "zzAAA112", block: `agent "a"` },
+    { id: "C13", what: "agent field written on an action", source: withLine("action", "produces: [zzAAA113]"), name: "produces", marker: "zzAAA113", block: `action "b"` },
+    { id: "C16a", what: "v8 field serves: on an action", source: withLine("action", "serves: zzAAA116"), name: "serves", marker: "zzAAA116", block: `action "b"` },
+    { id: "C16b", what: "v8 field strength: on an action", source: withLine("action", "strength: zzAAA117"), name: "strength", marker: "zzAAA117", block: `action "b"` },
+    { id: "C17", what: "v8 field state: at the top level", source: withLine("top", "  state: zzAAA118"), name: "state", marker: "zzAAA118", block: "" },
+    { id: "C17b", what: "v8 state block at the top level", source: withLine("top", "  state draft {\n    x: zzAAA119\n  }"), name: "state", marker: "zzAAA119", block: "the topology" },
+];
+const run = (source) => {
+    const ast = parse(source);
+    return { ast, results: validate(ast) };
+};
+const named = (results, ...words) => results.filter((r) => words.every((w) => r.message.includes(w)));
+function cli(source, ...args) {
+    const dir = fs.mkdtempSync(join(os.tmpdir(), "at-unknown-"));
+    const file = join(dir, "probe.at");
+    fs.writeFileSync(file, source);
+    try {
+        const r = spawnSync(process.execPath, [CLI, ...args.map((a) => (a === "FILE" ? file : a.replace("DIR", dir)))], { encoding: "utf8" });
+        return { code: r.status, out: r.stdout + r.stderr, dir };
+    }
+    finally {
+        // dir is removed by the caller when it reads output files
+    }
+}
+describe("a name the parser does not read is reported, never dropped", () => {
+    it("[N23] the baseline still passes", () => {
+        expect(run(BASELINE).results).toEqual([]);
+    });
+    it("[N23] an unknown field on an agent is reported, not dropped", () => {
+        const { results } = run(CASES[0].source);
+        const hit = named(results, "zzmarker", `agent "a"`);
+        expect(hit.length).toBeGreaterThan(0);
+        expect(hit[0]).toMatchObject({ rule: "V102", level: "error" });
+    });
+    it("[N23] a misspelled field is reported with the field it resembles", () => {
+        const hit = named(run(CASES[1].source).results, "modle");
+        expect(hit.length).toBeGreaterThan(0);
+        expect(hit[0].message).toContain("Did you mean `model`?");
+    });
+    for (const c of CASES.slice(2, 8)) {
+        it(`[N23] an unknown field is reported on every block that holds fields: ${c.what}`, () => {
+            expect(named(run(c.source).results, c.name, c.block).length).toBeGreaterThan(0);
+        });
+    }
+    it("[N23] an unknown field in meta is reported", () => {
+        expect(named(run(CASES[8].source).results, "zzfield", `"meta"`).length).toBeGreaterThan(0);
+    });
+    it("[N23] an unknown top-level block is reported, not dropped", () => {
+        expect(named(run(CASES[9].source).results, "zzblock", "not a topology section").length).toBeGreaterThan(0);
+        expect(named(run(CASES[10].source).results, "contract c1", "not a topology section").length).toBeGreaterThan(0);
+    });
+    it("[N23] an unknown block nested in a node is reported", () => {
+        expect(named(run(CASES[11].source).results, "zzblock", `agent "a"`).length).toBeGreaterThan(0);
+    });
+    it("[N23] a field valid on another node type is reported on the wrong one", () => {
+        const hit = named(run(CASES[12].source).results, "`produces` is not an action field", "agent");
+        expect(hit.length).toBeGreaterThan(0);
+    });
+    it("[N23] the v8 words serves, strength and state are reported until the language has them", () => {
+        for (const c of CASES.slice(13)) {
+            expect(named(run(c.source).results, c.name).length, c.id).toBeGreaterThan(0);
+        }
+    });
+    it("[N23] nothing written in the file vanishes between parse and validate", () => {
+        for (const c of CASES) {
+            const { ast, results } = run(c.source);
+            const kept = JSON.stringify(ast).includes(c.marker);
+            const reported = named(results, c.name).length > 0;
+            expect(kept || reported, `${c.id} ${c.what}`).toBe(true);
+        }
+    });
+    it("[N23] validate does not print \"All validation rules passed\" when anything was dropped, and exits 1", () => {
+        for (const c of [CASES[0], CASES[10], CASES[13]]) {
+            const r = cli(c.source, "validate", "FILE");
+            fs.rmSync(r.dir, { recursive: true, force: true });
+            expect(r.out, c.id).not.toContain("All validation rules passed");
+            expect(r.out, c.id).toContain("V102");
+            expect(r.code, c.id).toBe(1);
+        }
+    });
+    it("[N23] scaffold refuses a file with an unknown field instead of dropping it", () => {
+        const r = cli(CASES[0].source, "scaffold", "FILE", "--target", "claude-code", "--output", "DIR/out");
+        const wrote = fs.existsSync(join(r.dir, "out", ".claude"));
+        fs.rmSync(r.dir, { recursive: true, force: true });
+        expect(r.code).not.toBe(0);
+        expect(r.out).toContain("zzmarker");
+        expect(wrote).toBe(false);
+    });
+    it("[N23] the on-timeout value is still caught by V59 (the case that already worked)", () => {
+        const { ast, results } = run(withLine("human", "on-timeout: zzAAA114"));
+        expect(JSON.stringify(ast)).toContain("zzAAA114");
+        expect(results.some((r) => r.rule === "V59")).toBe(true);
+    });
+});
+describe("an enum field rejects a value outside its documented set", () => {
+    it("[N24] an agent's behavior must be advisory or blocking", () => {
+        const hit = run(withLine("agent", "behavior: zzAAA125")).results.filter((r) => r.rule === "V103");
+        expect(hit).toHaveLength(1);
+        expect(hit[0].message).toContain("zzAAA125");
+        expect(hit[0].message).toContain("advisory or blocking");
+    });
+    it("[N24] a gate's behavior must be advisory or blocking", () => {
+        expect(run(withLine("gate", "behavior: loud")).results.some((r) => r.rule === "V103")).toBe(true);
+    });
+    it("[N24] advisory and blocking pass", () => {
+        for (const v of ["advisory", "blocking"]) {
+            expect(run(withLine("agent", `behavior: ${v}`)).results).toEqual([]);
+        }
+    });
+});
+/**
+ * Guard: every field the docs list passes without a V102. A rule that flags a
+ * documented field is worse than the bug it fixes. The docs used to list
+ * agent fields by their AST names (`maxTurns`), which the parser drops.
+ */
+describe("every field in the docs is a name the parser reads", () => {
+    const PAGES = [
+        { topic: "topology", section: "## Meta Block Fields", template: (f) => withLine("meta", f) },
+        { topic: "agent", section: "## All Fields", template: (f) => withLine("agent", f) },
+        { topic: "action", section: "## Fields", template: (f) => withLine("action", f) },
+        { topic: "human", section: "## Fields", template: (f) => withLine("human", f) },
+        { topic: "gate", section: "## Fields", template: (f) => withLine("gate", f) },
+        { topic: "hooks", section: "## Fields", template: (f) => withLine("hook", f) },
+        { topic: "schedule", section: "## Fields", template: (f) => withLine("job", f) },
+        { topic: "artifacts", section: "## Fields", template: (f) => withLine("artifact", f) },
+        { topic: "orchestrator", section: "## Fields", template: (f) => BASELINE.replace("    handles: [b]\n", `    handles: [b]\n    ${f}\n`) },
+        { topic: "group", section: "## Fields", template: (f) => withLine("top", `  group gc {\n    ${f}\n  }`) },
+        { topic: "tools", section: "## Fields", template: (f) => withLine("top", `  tools {\n    tool t {\n      ${f}\n    }\n  }`) },
+        { topic: "skills", section: "## Fields", template: (f) => withLine("top", `  skill s {\n    ${f}\n  }`) },
+    ];
+    /** First-column names of the tables under `section`, until the next `## `. */
+    function documented(topic, section) {
+        const page = topics[topic].content();
+        const start = page.indexOf(section);
+        expect(start, `${topic}: "${section}" not found`).toBeGreaterThan(-1);
+        const end = page.indexOf("\n## ", start + section.length);
+        const body = page.slice(start, end === -1 ? undefined : end);
+        return [...body.matchAll(/^\|\s*`?([a-zA-Z][\w-]*)`?\s*\|/gm)]
+            .map((m) => m[1])
+            .filter((n) => !["Field", "id", "name", "NAME"].includes(n));
+    }
+    for (const p of PAGES) {
+        it(`[N23] every field in docs ${p.topic} passes without a V102`, () => {
+            const fields = documented(p.topic, p.section);
+            expect(fields.length).toBeGreaterThan(0);
+            const flagged = fields.filter((f) => run(p.template(`${f}: x`)).results.some((r) => r.rule === "V102"));
+            expect(flagged, `${p.topic}: documented but reported as unknown`).toEqual([]);
+        });
+    }
+});
+//# sourceMappingURL=unknown-names.test.js.map

package/dist/__tests__/e2e/unknown-names.test.js.map

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package/dist/__tests__/live/claude-code.live.test.js

@@ -145,6 +145,13 @@ describe.skipIf(!LIVE)("[L3] Claude Code reads the phase-3 constructs as meant",
             // YAML error there would drop it. auditor is manual: without a
             // description Claude Code skipped it.
             expect(run.init.agents).toEqual(expect.arrayContaining(["drafter", "auditor"]));
+            // runs: fork and runs: inline are skills, not agents (M1); auditor's new
+            // frontmatter (color, initialPrompt, omitClaudeMd, effort) still loads (F1)
+            expect(run.init.skills).toEqual(expect.arrayContaining(["critic", "tidy"]));
+            // tone has paths: ["drafts/**/*.md"]: Claude Code holds a path-scoped
+            // skill back until matching files are in play, so the field is honoured
+            expect(run.init.skills).not.toContain("tone");
+            expect(run.init.agents).not.toContain("critic");
             // The fixture's Stop prompt hook asks for a summary; "OK" is not one, so
             // Claude Code feeds the hook's verdict back: proof the prompt handler ran
             // (as a command it would have failed to execute).

package/dist/__tests__/live/claude-code.live.test.js.map

@@ -1 +1 @@
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package/dist/__tests__/open-findings.test.js

@@ -8,8 +8,12 @@
  */
 import { describe, it } from "vitest";
 describe("open findings (spec/testing.md)", () => {
-    it.todo("[B5] An agent's permissions read as per-agent grants; Claude Code allow rules are session-wide");
-    it.todo("[F1] Missing first-class fields: agent effort, initialPrompt, omitClaudeMd, cache TTL, color; skill when_to_use, arguments, paths, shell");
-    it.todo("[F2] Hooks as a typed union (http, mcp_tool, agent; once, async, if)");
+    it.todo("[I4] V14 refuses an agent with both `tools` and `disallowed-tools`, but Claude Code accepts both, so an honest import of such a hand-built agent has validation errors");
+    it.todo("[B3] Agent teams (peers that message each other) have no node or edge type; experimental in Claude Code, interactive sessions only");
+    it.todo("[B7] The `observability { }` block is ignored by the claude-code binding");
+    it.todo("[N22] Subagent nesting depth (Claude Code: 3) and fan-out (20 at once) are not checked");
+    it.todo("[F4] Agent `memory` scope (user/project/local) and `autoCompactWindow` are not first-class; `memory:` already names stores, so the scope needs another word");
+    it.todo("[N25] An agent's `role:` is documented but never read; the role text comes only from the roles block by agent id");
+    it.todo("[N26] V102 does not look inside free-form or not-yet-listed blocks (prompt, extensions, settings, env, memory, providers, mcp-servers, interfaces, triggers, depth, flow, ...)");
 });
 //# sourceMappingURL=open-findings.test.js.map

package/dist/__tests__/open-findings.test.js.map

@@ -1 +1 @@
-{"version":3,"file":"open-findings.test.js","sourceRoot":"","sources":["../../src/__tests__/open-findings.test.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,QAAQ,CAAC;AAEtC,QAAQ,CAAC,iCAAiC,EAAE,GAAG,EAAE;IAC/C,EAAE,CAAC,IAAI,CAAC,gGAAgG,CAAC,CAAC;IAC1G,EAAE,CAAC,IAAI,CAAC,0IAA0I,CAAC,CAAC;IACpJ,EAAE,CAAC,IAAI,CAAC,sEAAsE,CAAC,CAAC;AAClF,CAAC,CAAC,CAAC"}
+{"version":3,"file":"open-findings.test.js","sourceRoot":"","sources":["../../src/__tests__/open-findings.test.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,QAAQ,CAAC;AAEtC,QAAQ,CAAC,iCAAiC,EAAE,GAAG,EAAE;IAC/C,EAAE,CAAC,IAAI,CAAC,wKAAwK,CAAC,CAAC;IAClL,EAAE,CAAC,IAAI,CAAC,oIAAoI,CAAC,CAAC;IAC9I,EAAE,CAAC,IAAI,CAAC,0EAA0E,CAAC,CAAC;IACpF,EAAE,CAAC,IAAI,CAAC,wFAAwF,CAAC,CAAC;IAClG,EAAE,CAAC,IAAI,CAAC,6JAA6J,CAAC,CAAC;IACvK,EAAE,CAAC,IAAI,CAAC,kHAAkH,CAAC,CAAC;IAC5H,EAAE,CAAC,IAAI,CAAC,gLAAgL,CAAC,CAAC;AAC5L,CAAC,CAAC,CAAC"}

package/dist/bindings/claude-code.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"claude-code.d.ts","sourceRoot":"","sources":["../../src/bindings/claude-code.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EACV,WAAW,EAkBZ,MAAM,kBAAkB,CAAC;AAE1B,OAAO,KAAK,EAAE,aAAa,EAAiB,MAAM,YAAY,CAAC;AA2lE/D;;;;;;;;;;;;;;;;;;;;GAoBG;AACH,eAAO,MAAM,cAAc,sCAAsC,CAAC;AAClE,eAAO,MAAM,SAAS,mBAAmB,CAAC;AAE1C;;;;GAIG;AACH,wBAAgB,YAAY,CAAC,GAAG,EAAE,WAAW,GAAG,MAAM,GAAG,IAAI,CAQ5D;AAoKD;;;;;;;;;;GAUG;AACH,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,MAAM,CAWrE;AAED;;;;;;GAMG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,WAAW,GAAG,MAAM,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAuC3E;AAujCD,eAAO,MAAM,iBAAiB,EAAE,aAuG/B,CAAC"}

package/dist/bindings/claude-code.js

@@ -53,13 +53,26 @@ const UNIVERSAL_EVENTS = {
 function claudeEvent(on) {
     return UNIVERSAL_EVENTS[on] ?? on;
 }
-/** A settings.json hook handler for a command or prompt hook. */
+/** Whether a hook runs a shell command (and so has a script). */
+function isCommandHook(hook) {
+    return (hook.type ?? "command") === "command";
+}
+/** A settings.json hook handler, in the shape Claude Code reads for its type. */
 function hookHandler(hook, command) {
-    // A prompt hook asks a model to judge the event; its run: is the prompt.
-    if (hook.type === "prompt") {
-        return { type: "prompt", prompt: hook.run, ...(hook.timeout ? { timeout: hook.timeout } : {}) };
+    const timeout = hook.timeout ? { timeout: hook.timeout } : {};
+    switch (hook.type ?? "command") {
+        // A prompt or agent hook asks a model (or a subagent) to judge the event;
+        // its run: is the prompt.
+        case "prompt":
+        case "agent":
+            return { type: hook.type, prompt: hook.run, ...(hook.model ? { model: hook.model } : {}), ...timeout };
+        case "http":
+            return { type: "http", url: hook.url, ...timeout };
+        case "mcp_tool":
+            return { type: "mcp_tool", server: hook.server, tool: hook.tool, ...timeout };
+        default:
+            return { type: "command", command: command(), ...(hook.async ? { async: true } : {}), ...timeout };
     }
-    return { type: "command", command: command(), ...(hook.timeout ? { timeout: hook.timeout } : {}) };
 }
 /**
  * Downshift all markdown headings by one level so they nest properly
@@ -122,10 +135,16 @@ function frontmatter(fields) {
  * human, and orchestrator nodes are NOT registered and therefore CANNOT be
  * used as SubagentStop matchers.
  */
+/** An agent with runs: inline or fork compiles to a skill, not a subagent. */
+function runsAsSkill(agent) {
+    return agent.runs === "inline" || agent.runs === "fork";
+}
+/** Permission modes a subagent may ask for but cannot get beyond its session. */
+const LOOSER_MODES = new Set(["acceptEdits", "auto", "dontAsk", "bypassPermissions"]);
 function isRegisteredSubagentType(ast, name) {
     if (!name)
         return false;
-    return ast.nodes.some((n) => (n.type === "agent" || n.type === "group") && n.id === name);
+    return ast.nodes.some((n) => (n.type === "group" || (n.type === "agent" && !runsAsSkill(n))) && n.id === name);
 }
 /**
  * Resolve the topology's orchestration delegation mode.
@@ -492,6 +511,9 @@ function generateAgents(ast) {
         // .claude/agents/<name>/AGENT.md for it. See generateWorkflowLaunchArtifacts.
         if (isWorkflowSeamAgent(agent))
             continue;
+        // runs: inline or fork compiles to a skill (generateAgentSkills).
+        if (runsAsSkill(agent))
+            continue;
         // Build frontmatter fields
         const fm = {};
         fm.name = agent.id;
@@ -526,7 +548,23 @@ function generateAgents(ast) {
             const mapped = mapPermissionMode(agent.permissions);
             if (mapped)
                 fm.permissionMode = mapped;
+            // B5: allow rules are session-wide; a subagent can narrow what its
+            // session may do, never widen it.
+            if (mapped && LOOSER_MODES.has(mapped)) {
+                console.warn(`[claude-code] Agent "${agent.id}" permissions: ${agent.permissions} compiles to permissionMode ${mapped}. ` +
+                    `Claude Code ignores it when the session already runs in acceptEdits, auto or bypassPermissions, ` +
+                    `and a subagent cannot get permissions its session lacks: grant them in settings { allow: [...] }.`);
+            }
         }
+        // thinking is the language's reasoning-effort field; Claude Code calls it effort.
+        if (agent.thinking && agent.thinking !== "off")
+            fm.effort = agent.thinking;
+        if (agent.color)
+            fm.color = agent.color;
+        if (agent.initialPrompt)
+            fm.initialPrompt = agent.initialPrompt;
+        if (agent.omitClaudeMd != null)
+            fm.omitClaudeMd = agent.omitClaudeMd;
         if (agent.isolation)
             fm.isolation = agent.isolation;
         // Note: sandbox and fallback-chain are not recognized by Claude Code frontmatter
@@ -571,7 +609,7 @@ function generateAgents(ast) {
                 hookLines.push(`  ${eventName}:`);
                 for (const hook of hooks) {
                     const scriptName = scriptNameFromRun(hook.run);
-                    if (hook.type !== "prompt" && !scriptName)
+                    if (isCommandHook(hook) && !scriptName)
                         continue; // V96: prose in run names no script
                     const handler = hookHandler(hook, () => `bash .claude/skills/${topologyName}/scripts/${agent.id}-${scriptName}`);
                     // JSON strings are valid YAML double-quoted scalars, so a regex
@@ -618,6 +656,12 @@ function generateAgents(ast) {
         }
         sections.push(PROMPT_FENCE_CLOSE);
         sections.push("");
+        if (agent.independent) {
+            sections.push("## Independence");
+            sections.push("");
+            sections.push(INDEPENDENT_NOTE);
+            sections.push("");
+        }
         // Reads section
         if (agent.reads && agent.reads.length > 0) {
             sections.push("## Reads");
@@ -1363,6 +1407,25 @@ function generateTopologySkill(ast) {
             sections.push("");
         }
     }
+    // How each node runs, when it is not a plain subagent: the choice is on the
+    // node (runs:, independent), and the playbook says how to call it.
+    const special = ast.nodes.filter((n) => n.type === "agent" && (runsAsSkill(n) || !!n.independent));
+    if (special.length > 0) {
+        sections.push("## How these nodes run");
+        sections.push("");
+        for (const agent of special) {
+            const how = agent.runs === "inline"
+                ? `invoke the \`${agent.id}\` skill yourself; it runs in your own context`
+                : agent.runs === "fork"
+                    ? `invoke the \`${agent.id}\` skill; it runs in a fresh forked context`
+                    : `launch the \`${agent.id}\` subagent`;
+            const indep = agent.independent
+                ? "; it is independent: hand it only the artifacts it reads, never your reasoning or the author's"
+                : "";
+            sections.push(`- **${agent.id}**: ${how}${indep}.`);
+        }
+        sections.push("");
+    }
     // Schedules section
     if (ast.schedules.length > 0) {
         sections.push("## Schedules");
@@ -1503,6 +1566,54 @@ function generateTopologySkill(ast) {
     return files;
 }
 /** Generate skill-level files from the skills block. */
+/** What an independent node is told, wherever it runs. */
+const INDEPENDENT_NOTE = "You are independent of the author: judge only the artifacts you are given to read. " +
+    "If you are handed the author's reasoning, drafts notes or conversation, ignore them.";
+/**
+ * An agent with runs: inline or fork compiles to a skill: inline runs in the
+ * caller's own context, fork in a fresh forked one (context: fork). The node
+ * keeps its id, description, model, tools and prompt.
+ */
+function generateAgentSkills(ast) {
+    const files = [];
+    for (const node of ast.nodes) {
+        if (node.type !== "agent")
+            continue;
+        const agent = node;
+        if (!runsAsSkill(agent))
+            continue;
+        const fm = { name: agent.id };
+        const desc = agent.description ?? ast.roles[agent.role ?? ""] ?? ast.roles[agent.id] ?? agent.role;
+        if (desc)
+            fm.description = desc;
+        if (agent.runs === "fork")
+            fm.context = "fork";
+        if (agent.model && isClaudeCodeModel(agent.model))
+            fm.model = agent.model;
+        if (agent.thinking && agent.thinking !== "off")
+            fm.effort = agent.thinking;
+        if (agent.tools && agent.tools.length > 0)
+            fm["allowed-tools"] = agent.tools.map(convertMcpToolName).join(", ");
+        if (agent.disallowedTools && agent.disallowedTools.length > 0) {
+            fm["disallowed-tools"] = agent.disallowedTools.map(convertMcpToolName).join(", ");
+        }
+        if (agent.invocation === "manual")
+            fm["disable-model-invocation"] = true;
+        const sections = [frontmatter(fm), "", `# ${agent.label || toTitle(agent.id)}`, ""];
+        sections.push(agent.runs === "fork"
+            ? "Runs as a skill in a fresh forked context: it sees none of the conversation that invoked it."
+            : "Runs as a skill in the caller's own context: the same agent, no handoff.");
+        sections.push("", "## Instructions", "", downshiftHeadings(agent.prompt ?? desc ?? "Complete the assigned task."), "");
+        if (agent.reads && agent.reads.length > 0)
+            sections.push("## Reads", ...agent.reads.map((r) => `- ${r}`), "");
+        if (agent.writes && agent.writes.length > 0)
+            sections.push("## Writes", ...agent.writes.map((w) => `- ${w}`), "");
+        if (agent.independent)
+            sections.push("## Independence", "", INDEPENDENT_NOTE, "");
+        files.push({ path: `.claude/skills/${agent.id}/SKILL.md`, content: sections.join("\n"), category: "agent" });
+    }
+    return files;
+}
 function generateSkills(ast) {
     const files = [];
     for (const skill of ast.skills) {
@@ -1525,6 +1636,23 @@ function generateSkills(ast) {
         if (skill.allowedTools && skill.allowedTools.length > 0) {
             sfm["allowed-tools"] = skill.allowedTools.map(convertMcpToolName).join(", ");
         }
+        if (skill.disallowedTools && skill.disallowedTools.length > 0) {
+            sfm["disallowed-tools"] = skill.disallowedTools.map(convertMcpToolName).join(", ");
+        }
+        if (skill.whenToUse)
+            sfm.when_to_use = skill.whenToUse;
+        if (skill.argumentHint)
+            sfm["argument-hint"] = skill.argumentHint;
+        if (skill.arguments && skill.arguments.length > 0)
+            sfm.arguments = skill.arguments;
+        if (skill.paths && skill.paths.length > 0)
+            sfm.paths = skill.paths;
+        if (skill.shell)
+            sfm.shell = skill.shell;
+        if (skill.model)
+            sfm.model = skill.model;
+        if (skill.thinking && skill.thinking !== "off")
+            sfm.effort = skill.thinking;
         // Only emit frontmatter if there are fields beyond just the name
         if (Object.keys(sfm).length > 1) {
             sections.push(frontmatter(sfm));
@@ -2046,8 +2174,8 @@ function generateHookScripts(ast) {
             continue;
         // A Mod's run: is the user's TypeScript module — never overwrite it with a
         // bash stub. generateModPlugin imports it instead.
-        if (hook.type === "mod" || hook.type === "prompt")
-            continue;
+        if (!isCommandHook(hook))
+            continue; // a mod's module, or no script at all
         const runPath = hook.run;
         // If the run path starts with '.' or '/' it is already project-relative —
         // generate the stub at exactly that path (observability pattern).
@@ -2089,7 +2217,7 @@ function generateAgentHookScripts(ast) {
         if (!agent.hooks || agent.hooks.length === 0)
             continue;
         for (const hook of agent.hooks) {
-            if (!hook.run || hook.type === "mod" || hook.type === "prompt")
+            if (!hook.run || !isCommandHook(hook))
                 continue;
             const scriptName = scriptNameFromRun(hook.run);
             if (!scriptName)
@@ -2161,7 +2289,7 @@ export function settingsHooksOf(ast) {
                 `delegation to "subagent".`);
             continue;
         }
-        if (hook.type !== "prompt" && proseInRun(hook.run))
+        if (isCommandHook(hook) && proseInRun(hook.run))
             continue; // V96: prose in run names no script
         if (!hooksByEvent[eventName]) {
             hooksByEvent[eventName] = [];
@@ -3235,6 +3363,7 @@ export const claudeCodeBinding = {
         files.push(...skillFiles);
         // Named skills
         files.push(...generateSkills(ast));
+        files.push(...generateAgentSkills(ast));
         // Schemas
         files.push(...generateSchemas(ast));
         // Memory directories