agentopology 0.5.1 → 0.6.0

package/dist/scaffold/merge.js

@@ -107,24 +107,38 @@ export function deepMergeJson(existingRaw, generatedRaw) {
         return existingRaw;
     }
     const merged = mergeObjects(existing, generated);
+    // Nothing to add: keep the user's bytes, formatting included.
+    if (JSON.stringify(merged) === JSON.stringify(existing))
+        return existingRaw;
     return JSON.stringify(merged, null, 2) + "\n";
 }
 /**
  * Merge settings.json files with domain-aware logic for Claude Code settings.
  *
+ * The user's file is the base; scaffold only adds or replaces what it owns.
+ *
  * Rules:
- *   - permissions.allow: union-merge (deduplicated)
- *   - permissions.deny: union-merge (deduplicated)
+ *   - permissions: every existing key is kept (ask, defaultMode,
+ *     additionalDirectories, ...); allow, deny and ask arrays are
+ *     union-merged; a generated scalar is added only where none exists
  *   - env: shallow-merge (generated wins on key conflict)
- *   - hooks: rewritten entirely from generated (topology owns hooks)
+ *   - hooks: a hook group is the topology's when one of its commands names a
+ *     path in `ownedPaths`; those are replaced by the generated hooks, and
+ *     every other group — the user's — is kept. Without `ownedPaths`, nothing
+ *     existing is treated as owned, so nothing is removed
  *   - All other top-level keys: existing wins (user-only keys preserved)
  *
+ * This used to rebuild permissions from allow/deny alone and replace hooks
+ * wholesale, so a re-scaffold deleted the user's own hooks, ask rules and
+ * defaultMode, and two topologies in one repo deleted each other's hooks.
+ *
  * @param existingRaw - Current settings.json content on disk (JSON string, or empty string)
  * @param generatedRaw - Freshly generated settings.json content (JSON string)
+ * @param ownedPaths - Paths this topology writes or wrote (generated + manifest)
  * @returns Merged JSON string
  * @throws {Error} if existingRaw is non-empty and is invalid JSON
  */
-export function deepMergeSettingsJson(existingRaw, generatedRaw) {
+export function deepMergeSettingsJson(existingRaw, generatedRaw, ownedPaths = []) {
     // Empty existing means first scaffold — return generated unchanged
     if (existingRaw.trim() === "") {
         return generatedRaw;
@@ -145,22 +159,35 @@ export function deepMergeSettingsJson(existingRaw, generatedRaw) {
     }
     // Start with existing (preserves all user-only top-level keys)
     const merged = { ...existing };
-    // --- permissions: union-merge allow and deny arrays ---
-    const existingPerms = (existing.permissions ?? {});
-    const generatedPerms = (generated.permissions ?? {});
-    if (generated.permissions !== undefined || existing.permissions !== undefined) {
-        const mergedPerms = {};
-        for (const key of ["allow", "deny"]) {
-            const ex = Array.isArray(existingPerms[key]) ? existingPerms[key] : [];
-            const gen = Array.isArray(generatedPerms[key]) ? generatedPerms[key] : [];
-            const union = Array.from(new Set([...ex, ...gen]));
-            if (union.length > 0) {
+    // --- permissions: keep every existing key; union the rule arrays ---
+    if (isPlainObject(generated.permissions) || isPlainObject(existing.permissions)) {
+        const ex = isPlainObject(existing.permissions) ? existing.permissions : {};
+        const gen = isPlainObject(generated.permissions) ? generated.permissions : {};
+        const mergedPerms = { ...ex };
+        for (const [key, value] of Object.entries(gen)) {
+            const current = mergedPerms[key];
+            if (Array.isArray(value) || Array.isArray(current)) {
+                const union = Array.from(new Set([
+                    ...(Array.isArray(current) ? current : []),
+                    ...(Array.isArray(value) ? value : []),
+                ]));
                 mergedPerms[key] = union;
             }
+            else if (current === undefined) {
+                mergedPerms[key] = value;
+            }
+        }
+        for (const key of Object.keys(mergedPerms)) {
+            if (Array.isArray(mergedPerms[key]) && mergedPerms[key].length === 0) {
+                delete mergedPerms[key];
+            }
         }
         if (Object.keys(mergedPerms).length > 0) {
             merged.permissions = mergedPerms;
         }
+        else {
+            delete merged.permissions;
+        }
     }
     // --- env: shallow-merge, generated wins on conflict ---
     if (generated.env !== undefined) {
@@ -168,12 +195,12 @@ export function deepMergeSettingsJson(existingRaw, generatedRaw) {
         const generatedEnv = generated.env;
         merged.env = { ...existingEnv, ...generatedEnv };
     }
-    // --- hooks: rewritten entirely from generated (topology owns hooks) ---
-    if (generated.hooks !== undefined) {
-        merged.hooks = generated.hooks;
+    // --- hooks: replace the topology's own groups, keep the user's ---
+    const mergedHooks = mergeHooks(existing.hooks, generated.hooks, ownedPaths);
+    if (mergedHooks) {
+        merged.hooks = mergedHooks;
     }
     else {
-        // No hooks in generated — remove the hooks key (topology no longer declares any)
         delete merged.hooks;
     }
     // --- all other generated keys: add if missing, do NOT overwrite existing ---
@@ -184,8 +211,72 @@ export function deepMergeSettingsJson(existingRaw, generatedRaw) {
             merged[key] = value;
         }
     }
+    // Nothing to add: keep the user's bytes, formatting included.
+    if (JSON.stringify(merged) === JSON.stringify(existing))
+        return existingRaw;
     return JSON.stringify(merged, null, 2) + "\n";
 }
+function isPlainObject(v) {
+    return v !== null && typeof v === "object" && !Array.isArray(v);
+}
+/**
+ * Identity of a hook group for deduplication: matcher plus each command with
+ * the project-dir prefix, quotes and "./" removed. An imported hook written
+ * as `bash .claude/hooks/x.sh` and the same hook compiled as
+ * `bash "$CLAUDE_PROJECT_DIR/.claude/hooks/x.sh"` are one hook, not two that
+ * both fire.
+ */
+function hookGroupKey(group) {
+    if (!isPlainObject(group) || !Array.isArray(group.hooks))
+        return JSON.stringify(group);
+    const commands = group.hooks.map((h) => isPlainObject(h) && typeof h.command === "string"
+        ? h.command.replace(/"?\$CLAUDE_PROJECT_DIR\/?/g, "").replace(/["']/g, "").replace(/(^|\s)\.\//g, "$1").replace(/\s+/g, " ").trim()
+        : JSON.stringify(h));
+    return JSON.stringify([group.matcher ?? "", commands]);
+}
+/** Whether a hook group runs a script this topology owns. */
+function isOwnedHookGroup(group, scripts) {
+    if (!isPlainObject(group) || !Array.isArray(group.hooks))
+        return false;
+    return group.hooks.some((h) => {
+        if (!isPlainObject(h) || typeof h.command !== "string")
+            return false;
+        const tokens = h.command.split(/\s+/).map((t) => t.replace(/^\.\//, ""));
+        return tokens.some((t) => scripts.includes(t));
+    });
+}
+/**
+ * Per event: the user's groups first, then the generated ones, deduplicated.
+ * Returns undefined when no event keeps any group.
+ */
+function mergeHooks(existingHooks, generatedHooks, ownedPaths) {
+    // Config files are never hook scripts; matching them would claim a user hook
+    // that merely mentions CLAUDE.md.
+    const scripts = ownedPaths
+        .filter((p) => !/\.(md|json)$/.test(p))
+        .map((p) => p.replace(/^\.\//, ""));
+    const ex = isPlainObject(existingHooks) ? existingHooks : {};
+    const gen = isPlainObject(generatedHooks) ? generatedHooks : {};
+    const out = {};
+    for (const event of new Set([...Object.keys(ex), ...Object.keys(gen)])) {
+        // A group generated again stays where it is, so reruns (and two
+        // topologies taking turns) do not reorder the file.
+        const regenerated = new Set((Array.isArray(gen[event]) ? gen[event] : []).map(hookGroupKey));
+        const kept = (Array.isArray(ex[event]) ? ex[event] : []).filter((g) => regenerated.has(hookGroupKey(g)) || !isOwnedHookGroup(g, scripts));
+        const seen = new Set();
+        const groups = [];
+        for (const g of [...kept, ...(Array.isArray(gen[event]) ? gen[event] : [])]) {
+            const key = hookGroupKey(g);
+            if (seen.has(key))
+                continue;
+            seen.add(key);
+            groups.push(g);
+        }
+        if (groups.length > 0)
+            out[event] = groups;
+    }
+    return Object.keys(out).length > 0 ? out : undefined;
+}
 function mergeObjects(existing, generated) {
     // Start with a copy of existing (preserves user-only keys)
     const result = { ...existing };

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package/dist/scaffold/types.d.ts

@@ -49,5 +49,22 @@ export type FileAction = {
     path: string;
     content: string;
     detail: string;
+}
+/**
+ * Never written or deleted, even with --force. `unsafe` marks a path that
+ * must abort the whole run before anything is written (an empty or
+ * malformed file name — the EISDIR class).
+ */
+ | {
+    type: "blocked";
+    path: string;
+    detail: string;
+    unsafe?: boolean;
+}
+/** A create-only file already there: the user's. Never written or claimed. */
+ | {
+    type: "kept";
+    path: string;
+    detail: string;
 };
 //# sourceMappingURL=types.d.ts.map

package/dist/scaffold/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/scaffold/types.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,+CAA+C;AAC/C,MAAM,WAAW,aAAa;IAC5B,2DAA2D;IAC3D,IAAI,EAAE,MAAM,CAAC;IACb,6EAA6E;IAC7E,QAAQ,EAAE,SAAS,GAAG,OAAO,GAAG,QAAQ,GAAG,eAAe,CAAC;CAC5D;AAED,wDAAwD;AACxD,MAAM,WAAW,gBAAgB;IAC/B,4BAA4B;IAC5B,MAAM,EAAE,MAAM,CAAC;IACf,8DAA8D;IAC9D,UAAU,EAAE,MAAM,CAAC;IACnB,gDAAgD;IAChD,MAAM,EAAE,MAAM,CAAC;IACf,6DAA6D;IAC7D,WAAW,EAAE,MAAM,CAAC;IACpB,4DAA4D;IAC5D,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC,CAAC;CACtC;AAED,yEAAyE;AACzE,MAAM,MAAM,UAAU,GAClB;IAAE,IAAI,EAAE,QAAQ,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,UAAU,CAAC,EAAE,OAAO,CAAA;CAAE,GACvE;IAAE,IAAI,EAAE,QAAQ,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,UAAU,CAAC,EAAE,OAAO,CAAA;CAAE,GACvF;IAAE,IAAI,EAAE,QAAQ,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,GAChC;IAAE,IAAI,EAAE,WAAW,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,GACnC;IAAE,IAAI,EAAE,UAAU,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE;AACrE;;;;GAIG;GACD;IAAE,IAAI,EAAE,SAAS,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAE;AACrE,8EAA8E;GAC5E;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC"}

package/dist/visualizer/__tests__/gate-connectors.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=gate-connectors.test.d.ts.map

package/dist/visualizer/__tests__/gate-connectors.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"gate-connectors.test.d.ts","sourceRoot":"","sources":["../../../src/visualizer/__tests__/gate-connectors.test.ts"],"names":[],"mappings":""}

package/dist/visualizer/__tests__/gate-connectors.test.js

@@ -0,0 +1,88 @@
+import { describe, it, expect } from "vitest";
+import vm from "node:vm";
+import { parse } from "../../parser/index.js";
+import { generateVisualization } from "../index.js";
+/** Two gates guarding the same a -> b path. */
+const TWO_GATES = `topology tg : [pipeline] {
+  meta {
+    version: "1.0.0"
+    description: "x"
+  }
+  agent a {
+    model: sonnet
+    description: "first"
+    tools: [Read]
+  }
+  agent b {
+    model: sonnet
+    description: "second"
+    tools: [Read]
+  }
+  flow { a -> b }
+  gates {
+    gate g1 {
+      after: a
+      before: b
+      run: "scripts/g1.sh"
+    }
+    gate g2 {
+      after: a
+      before: b
+      run: "scripts/g2.sh"
+    }
+  }
+}`;
+/**
+ * The graph is drawn in the browser, so run the page's own scripts in a vm
+ * against a permissive DOM stub and read back what renderGraph wrote.
+ */
+function drawInVm(html) {
+    const scripts = [...html.matchAll(/<script>([\s\S]*?)<\/script>/g)].map((m) => m[1]);
+    const elements = {};
+    const makeEl = () => new Proxy({ innerHTML: "", textContent: "", style: {}, dataset: {}, classList: { add() { }, remove() { }, toggle() { }, contains: () => false } }, {
+        get(t, k) {
+            if (k in t)
+                return t[k];
+            if (k === "getBoundingClientRect")
+                return () => ({ width: 1200, height: 800, left: 0, top: 0 });
+            if (k === "querySelectorAll")
+                return () => [];
+            if (k === "querySelector")
+                return () => null;
+            return () => makeEl();
+        },
+    });
+    const document = {
+        getElementById: (id) => (elements[id] ??= makeEl()),
+        querySelector: () => null,
+        querySelectorAll: () => [],
+        addEventListener() { },
+        createElement: () => makeEl(),
+        body: makeEl(),
+    };
+    // The page's global object is `window` (dagre's bundle attaches itself there).
+    const ctx = vm.createContext({ document, console, innerWidth: 1200, innerHeight: 800, addEventListener() { }, setTimeout: () => 0, requestAnimationFrame: () => 0, localStorage: { getItem: () => null, setItem() { } } });
+    vm.runInContext("var window = globalThis;", ctx);
+    for (const src of scripts)
+        vm.runInContext(src, ctx);
+    const positions = JSON.parse(vm.runInContext("JSON.stringify(nodePositions)", ctx));
+    return { svg: elements["graph-svg"].innerHTML, positions };
+}
+describe("Topology visualizer — gates with both after and before", () => {
+    const { svg, positions } = drawInVm(generateVisualization(parse(TWO_GATES)));
+    it("draws each gate onto the path it guards: after -> gate and gate -> before", () => {
+        for (const g of ["g1", "g2"]) {
+            expect(svg).toContain(`data-from="a" data-to="${g}"`);
+            expect(svg).toContain(`data-from="${g}" data-to="b"`);
+        }
+    });
+    it("does not place two gates on the same pair at the same point", () => {
+        expect(positions.g1).toBeDefined();
+        expect(positions.g2).toBeDefined();
+        const dx = Math.abs(positions.g1.x - positions.g2.x);
+        const dy = Math.abs(positions.g1.y - positions.g2.y);
+        // They must not overlap: separated by at least a full width or height.
+        expect(dx >= positions.g1.w || dy >= positions.g1.h).toBe(true);
+    });
+});
+//# sourceMappingURL=gate-connectors.test.js.map

package/dist/visualizer/__tests__/gate-connectors.test.js.map

@@ -0,0 +1 @@
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package/dist/visualizer/index.js

@@ -797,17 +797,32 @@ function layoutNodes(nodes, edges) {
   });
   window.__dagreEdgePoints = edgePoints;
 
+  // Gates on the same (after, before) pair would land on one point, so each
+  // takes a slot in declaration order and the group is centred side by side.
+  var GATE_STACK_GAP = 16;
+  var pairCount = {}, pairSlot = {};
+  gateNodes.forEach(function(gate) {
+    if (!gate.after || !gate.before) return;
+    var key = gate.after + '|' + gate.before;
+    pairSlot[gate.id] = pairCount[key] || 0;
+    pairCount[key] = pairSlot[gate.id] + 1;
+  });
+  function pairOffset(gate, w) {
+    var n = pairCount[gate.after + '|' + gate.before] || 1;
+    return (pairSlot[gate.id] - (n - 1) / 2) * (w + GATE_STACK_GAP);
+  }
+
   // Position gates between their after/before nodes (same logic as before)
   gateNodes.forEach(function(gate) {
     if (gate.after && gate.before && gate.after === gate.before && positions[gate.after]) {
       var refPos = positions[gate.after];
       var sz = nodeSize(gate);
-      positions[gate.id] = { x: refPos.x, y: refPos.y + refPos.h + ROW_GAP / 2, w: sz.w, h: sz.h };
+      positions[gate.id] = { x: refPos.x + pairOffset(gate, sz.w), y: refPos.y + refPos.h + ROW_GAP / 2, w: sz.w, h: sz.h };
     } else if (gate.after && gate.before && positions[gate.after] && positions[gate.before]) {
       var afterPos = positions[gate.after], beforePos = positions[gate.before];
       var sz = nodeSize(gate);
       positions[gate.id] = {
-        x: (afterPos.x + beforePos.x) / 2,
+        x: (afterPos.x + beforePos.x) / 2 + pairOffset(gate, sz.w),
         y: afterPos.y + afterPos.h + (beforePos.y - afterPos.y - afterPos.h) / 2 - sz.h / 2,
         w: sz.w, h: sz.h
       };
@@ -1107,6 +1122,26 @@ function renderGraph() {
     s += '</g>';
   });
 
+  // Gate path connectors: a gate with both anchors sits ON the path it guards,
+  // so draw after -> gate and gate -> before (every anchor when there are several)
+  data.nodes.filter(n => n.type === 'gate' && n.after && n.before).forEach(gate => {
+    const gatePos = nodePositions[gate.id];
+    if (!gatePos) return;
+    const gateLink = (from, to, fX, fY, tX, tY) => {
+      s += '<g class="edge-group" data-from="' + from + '" data-to="' + to + '">';
+      s += '<path d="M' + fX + ',' + fY + ' L' + tX + ',' + tY + '" class="edge-path conditional" stroke-dasharray="3 3" marker-end="url(#arrow-cond)" opacity="0.5"/>';
+      s += '</g>';
+    };
+    (gate.afterAll || [gate.after]).forEach(a => {
+      const p = nodePositions[a];
+      if (p) gateLink(a, gate.id, p.x, p.y + p.h, gatePos.x, gatePos.y);
+    });
+    (gate.beforeAll || [gate.before]).forEach(b => {
+      const p = nodePositions[b];
+      if (p) gateLink(gate.id, b, gatePos.x, gatePos.y + gatePos.h, p.x, p.y);
+    });
+  });
+
   // --- Trigger badge (compact, not inline) ---
   // Triggers are shown as a small badge on the entry node, with a popover on click.
   // This avoids pills stacking on top of nodes in the graph.
@@ -1450,8 +1485,10 @@ function highlightConnected(nodeId) {
   const connectedNodes = new Set([nodeId]);
   data.edges.forEach(e => { if (e.from === nodeId || e.to === nodeId) { connectedNodes.add(e.from); connectedNodes.add(e.to); } });
   data.nodes.filter(n => n.type === 'gate').forEach(g => {
-    if (g.after === nodeId) connectedNodes.add(g.id);
-    if (g.id === nodeId && g.after) connectedNodes.add(g.after);
+    const afters = g.afterAll || (g.after ? [g.after] : []);
+    const befores = g.beforeAll || (g.before ? [g.before] : []);
+    if (afters.includes(nodeId) || befores.includes(nodeId)) connectedNodes.add(g.id);
+    if (g.id === nodeId) afters.concat(befores).forEach(id => connectedNodes.add(id));
   });
   document.querySelectorAll('.node-group').forEach(g => {
     const id = g.dataset.id;

package/dist/visualizer/index.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agentopology",
-  "version": "0.5.1",
+  "version": "0.6.0",
   "description": "The declarative language for multi-agent systems. Write once, scaffold for any platform.",
   "author": "Nadav Naveh",
   "license": "Apache-2.0",

package/spec/grammar.md

@@ -368,6 +368,7 @@ scale-field     = 'mode' ':' ('auto' | 'fixed' | 'config')
 
 | Field | Type | Required | Default | Description |
 |-------|------|----------|---------|-------------|
+| `file` | string | no | -- | Project-relative path of the hand-written file holding this node's internals. Bindings reference it and never generate or overwrite it (V97). `import` sets it on every file it did not generate, so a hand-built system comes in without losing anything. |
 | `role` | identifier | no | -- | Maps to a role defined in the `roles` block |
 | `model` | model-id | yes | -- | LLM model identifier (e.g., `opus`, `gpt-4o`, `gemini-pro`) |
 | `permissions` | perm-enum | no | `autonomous` | Permission mode |
@@ -1088,7 +1089,7 @@ Environment blocks have no fixed schema -- fields are identifier/string key-valu
 ```ebnf
 triggers        = 'triggers' '{' command-decl* '}'
 command-decl    = 'command' identifier '{' command-fields '}'
-command-fields  = 'pattern' ':' string ('argument' ':' template-var)?
+command-fields  = 'pattern' ':' string ('argument' ':' template-var)? ('file' ':' string)?
 ```
 
 ```agenttopology
@@ -1108,6 +1109,7 @@ triggers {
 |-------|------|----------|---------|
 | `pattern` | string | yes | -- |
 | `argument` | template-var | no | -- |
+| `file` | string | no | -- |
 
 ---
 
@@ -1117,9 +1119,12 @@ triggers {
 hooks           = 'hooks' '{' hook-decl* '}'
 hook-decl       = 'hook' identifier '{' hook-fields '}'
 hook-fields     = ('on' ':' hook-event | 'matcher' ':' string | 'run' ':' string
-                  | 'type' ':' hook-type | 'timeout' ':' number)*
-hook-event      = <universal-event> | <platform-event>
-hook-type       = 'command' | 'prompt'
+                  | 'type' ':' hook-type | 'flag' ':' env-name | 'timeout' ':' number)*
+hook-event      = <universal-event> | <platform-event> | <engine-event>
+hook-type       = 'command' | 'prompt' | 'mod'
+engine-event    = 'tool.call' | 'prompt.submit' | 'prompt.context' | 'session.start'
+                | 'session.end' | 'model.complete' | 'message.received'
+
 ```
 
 **Universal hook events** -- these are defined by the spec and must be supported by all bindings:
@@ -1170,8 +1175,14 @@ hooks {
 | `matcher` | string | no | -- |
 | `run` | string | yes | -- |
 | `type` | hook-type | no | `command` |
+| `flag` | env-name | no (mod only) | -- |
 | `timeout` | number | no | `600` |
 
+A `type: mod` hook is a TypeScript module loaded inside the engine (Claude
+Code function hooks). Its `on:` is an `engine-event` (V95); a command or
+prompt hook takes a PascalCase event. `flag:` names the env variable that
+switches the Mod on. Fields are one per line (V90).
+
 ---
 
 ### 4.17 `settings`
@@ -1351,6 +1362,10 @@ agent processor {
 
 ---
 
+### 4.20a `file:` — hand-written internals
+
+Any node (`agent`, `group`, `human`, ...), any `skill` and any trigger `command` may carry `file: "<project-relative path>"`. It says: the structure is described here, the internals live in that file, and they are the author's. A binding never generates or overwrites a file so marked; for a skill it leaves the whole skill folder alone, for a group its skill and runtime folder too. Gates and hooks still wire to the node by name. `agentopology import` sets `file:` on every file it finds that no scaffold manifest lists as generated, which is what makes import followed by scaffold lossless.
+
 ### 4.21 `skill` (declarations)
 
 Topology-level skill declarations. Each `skill` block declares a self-contained application that bundles executable scripts, domain knowledge, reference docs, and instructions into a coherent capability. Agents load skills via their `skills` field.
@@ -1394,6 +1409,7 @@ skill classification {
 
 | Field | Type | Required | Default |
 |-------|------|----------|---------|
+| `file` | string | no | -- |
 | `description` | string | no | -- |
 | `scripts` | name-list | no | `[]` |
 | `domains` | path-list | no | `[]` |