agentopology 0.2.5 → 0.4.0

package/README.md

@@ -1,8 +1,8 @@
 <h1 align="center">AgenTopology</h1>
 
 <p align="center">
-  <strong>The Terraform for AI agents.</strong><br/>
-  Define your agent team once. Deploy to any platform.
+  <strong>Harness as code.</strong> The Terraform for AI agents.<br/>
+  Define your agent team — and its memory — once. Deploy to any platform.
 </p>
 
 <p align="center">
@@ -116,7 +116,14 @@ npm install -g agentopology
 agentopology validate my-team.at
 ```
 
-**Scaffold** — generate platform configs:
+**Run it** — enact the topology now, with nothing written to disk:
+```bash
+agentopology plan my-team.at --task "Add rate limiting to the API"
+```
+Prints the flow, then a brief your coding agent follows to run the team with its
+own subagents. Nothing is scaffolded. See below.
+
+**Scaffold** — generate platform configs, when the team should outlive the session:
 ```bash
 agentopology scaffold my-team.at --target claude-code
 ```
@@ -133,6 +140,46 @@ agentopology targets
 
 ---
 
+## Two Lifecycles: Compile It, or Just Run It
+
+A `.at` file has always compiled to a persisted harness. It can also be **enacted
+directly** by the coding agent already in your session.
+
+| | `scaffold` | `plan` |
+|---|---|---|
+| Who executes | the platform, later | this session's agent, now |
+| On disk | `.claude/`, `.codex/`, … | nothing |
+| Lifetime | outlives the session | dies with it |
+| Portable | 8 targets | wherever the host agent runs |
+| Gates | real hooks, mechanically enforced | evidence contract |
+| Cost to change | regenerate and reconcile | free |
+
+Not a strategy choice — a **lifetime** choice. A team that should exist next week
+scaffolds. A delegation plan for the task in front of you runs.
+
+**Why this works:** the host coding agent is already the runtime. It plans, spawns
+subagents, runs them in parallel and re-plans. It does not need generated agent
+files to do any of that — it needs to know *who works, when they work, and what
+they know when they work*. That is what a topology says.
+
+`plan` cannot spawn agents itself, so it does not pretend to. It **validates**
+(the agent that wrote the file can write an illegal one), applies the spec's
+defaults, resolves execution order, and emits a brief that resolves what the host
+would otherwise guess: what crosses each handoff, what each reader must **not**
+read, which roles are mutually blind, and every declaration that cannot be
+enforced at runtime.
+
+Five features are platform *registrations* rather than steps — `triggers`,
+`schedules`, `mcp-servers`, `hooks`, and per-agent `tools`/`permissions`. They
+cannot work fileless on any vendor, and `plan` names them instead of silently
+skipping them.
+
+```bash
+agentopology docs interpreted-mode
+```
+
+---
+
 ## Claude Code Skill — The Fastest Way to Start
 
 **You don't need to learn `.at` syntax.** AgenTopology ships with an interactive skill that turns Claude Code into a topology designer. Describe the team you want in plain English — the skill generates everything.
@@ -364,6 +411,36 @@ mcp-servers {
 }
 ```
 
+</td>
+</tr>
+<tr>
+<td>
+
+**Company Brain** — agent-maintained, Obsidian-portable
+```
+store brain {
+  type: brain          # markdown, no DB
+  path: "brain/"
+  format: obsidian     # ports both ways
+}
+agent librarian {
+  custodian-of: [brain]  # owns its upkeep
+}
+```
+
+</td>
+<td>
+
+**Provenance styling** — color the graph by source
+```
+store brain {
+  sources {
+    gmail { color: "#EA4335" icon: "./gmail.svg" }
+    slack { color: "#4A154B" }
+  }
+}
+```
+
 </td>
 </tr>
 </table>
@@ -389,6 +466,39 @@ In Claude Code, this compiles to a **file-based protocol** — a shared transcri
 
 ---
 
+## Company Brain — Knowledge That Builds Itself
+
+A **brain** is a folder of linked markdown that agents maintain, not you. It's the [Obsidian](https://obsidian.md) graph model — notes connected by `[[wikilinks]]` and `#tags` — but **agent-maintained instead of hand-curated**.
+
+```
+store brain {
+  type: brain          # file-native: markdown, no database, no embeddings
+  path: "brain/"
+  format: obsidian     # ports both ways — open it in Obsidian, the graph just works
+}
+
+agent librarian {
+  custodian-of: [brain] {       # OWNS the brain's upkeep, not just read access
+    does: [link, tag, index, dedupe]
+  }
+}
+```
+
+- **Custodian agents** own a memory layer. Drop a note in, the librarian wires it into the graph — resolving `[[links]]`, assigning `#tags`, updating hub notes. Humans drop; agents wire.
+- **Ingester agents** feed it from anywhere. One agent per source (Gmail, Slack, calendar) writes raw notes; the librarian links them. See [`examples/company-brain-team.at`](examples/company-brain-team.at).
+- **Pure markdown, zero infrastructure.** No vector DB, no MCP server. Coding agents retrieve with `grep`. The whole brain is a folder you can `git clone`.
+- **100% Obsidian-compatible.** The vault *is* an Obsidian vault — agents build it, you open it in Obsidian for the graph view. Or use our built-in graph viewer (below) and skip Obsidian entirely.
+
+**See it without Obsidian** — render any brain vault as an interactive graph in a single self-contained HTML file:
+
+```bash
+agentopology visualize-brain brain/
+```
+
+Nodes are colored by what they *are* (person / org / topic) and by where they *came from* (declare `sources { gmail { color, icon } }` and notes from Gmail render in Gmail red with the logo). When you `visualize` a topology that owns brains, the two graphs **cross-link** — jump from the team diagram to its brain and back.
+
+This is **brain as code**: you declare the brain's architecture — its layers, its custodians, its sources — the same way you declare the agent team. See [`docs/company-brain.md`](docs/company-brain.md) for the full walkthrough.
+
 ---
 
 ## Programmatic API
@@ -462,21 +572,25 @@ You can `agentopology visualize` it into an interactive graph. You can hand it t
 - [`data-processing.at`](examples/data-processing.at) — ETL pipeline with batch processing and metering
 - [`scheduled-monitor.at`](examples/scheduled-monitor.at) — Monitoring system with scheduled health checks
 - [`openclaw-assistant.at`](examples/openclaw-assistant.at) — Customer support with routing and scheduling
+- [`company-brain.at`](examples/company-brain.at) — A plug-and-play company brain (librarian + researcher)
+- [`company-brain-team.at`](examples/company-brain-team.at) — A team that ingests (Gmail/Slack/calendar), wires, and audits a brain
 
 ---
 
 ## CLI Reference
 
 ```
-agentopology validate <file>              Validate an .at file (82 rules)
+agentopology validate <file>              Validate an .at file (92 rules)
+agentopology plan <file>                  Resolve for interpreted execution — no files written
 agentopology scaffold <file> --target <t> Generate platform configs
 agentopology sync <file> --target <t> --dir <d>  Sync platform files back to .at
 agentopology import --target <t> --dir <d>       Reverse-engineer platform files to .at
-agentopology visualize <file>             Interactive topology graph
-agentopology export <file> --format <fmt> Export as markdown, mermaid, or json
+agentopology visualize <file>             Interactive topology graph (+ cross-links any brains)
+agentopology visualize-brain <folder>     Render a brain vault as an Obsidian-style graph (no Obsidian)
+agentopology export <file> --format <fmt> Export as markdown, mermaid, json, ascii, or brief
 agentopology info <file>                  Topology analysis and suggestions
 agentopology targets                      List supported platforms
-agentopology docs [topic]                 Language reference (42 topics)
+agentopology docs [topic]                 Language reference (43 topics)
 ```
 
 ---

package/dist/analyzer/__tests__/analyzer.test.js

@@ -60,11 +60,23 @@ topology simple-pipeline : [pipeline, human-gate] {
 `;
 const FAN_OUT = `
 topology code-review : [pipeline, fan-out] {
-  meta { version: "2.0.0" description: "Fan-out review" }
-  orchestrator { model: opus handles: [intake, report] }
+  meta {
+    version: "2.0.0"
+    description: "Fan-out review"
+  }
+  orchestrator {
+    model: opus
+    handles: [intake, report]
+  }
   action intake { kind: inline }
-  agent analyzer { model: sonnet phase: 1 }
-  agent security { model: sonnet phase: 1 }
+  agent analyzer {
+    model: sonnet
+    phase: 1
+  }
+  agent security {
+    model: sonnet
+    phase: 1
+  }
   agent reporter { model: sonnet phase: 2 prompt { Summarize findings. } }
   action report { kind: report }
   flow {
@@ -78,10 +90,19 @@ topology code-review : [pipeline, fan-out] {
 `;
 const MINIMAL = `
 topology minimal : [pipeline] {
-  meta { version: "0.1.0" description: "Bare minimum" }
-  orchestrator { model: sonnet handles: [start] }
+  meta {
+    version: "0.1.0"
+    description: "Bare minimum"
+  }
+  orchestrator {
+    model: sonnet
+    handles: [start]
+  }
   action start { kind: inline }
-  agent worker { model: haiku phase: 1 }
+  agent worker {
+    model: haiku
+    phase: 1
+  }
   flow { start -> worker }
 }
 `;
@@ -243,11 +264,17 @@ describe("analyze — suggestions", () => {
         const ast = parse(`
 topology test : [pipeline] {
   meta { version: "1.0.0" }
-  orchestrator { model: sonnet handles: [start] }
+  orchestrator {
+    model: sonnet
+    handles: [start]
+  }
   action start { kind: inline }
   agent a { model: sonnet prompt { test } }
   flow { start -> a }
-  gates { gate g { after: a run: "check.sh" } }
+  gates { gate g {
+    after: a
+    run: "check.sh"
+  } }
 }
 `);
         const result = analyze(ast);

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package/dist/analyzer/__tests__/observability-gap.test.js

@@ -12,8 +12,14 @@ import { analyze } from "../index.js";
 // ---------------------------------------------------------------------------
 const NO_HOOKS_TOPOLOGY = `
 topology no-hooks : [pipeline] {
-  meta { version: "1.0.0" description: "No hooks at all" }
-  orchestrator { model: opus handles: [start] }
+  meta {
+    version: "1.0.0"
+    description: "No hooks at all"
+  }
+  orchestrator {
+    model: opus
+    handles: [start]
+  }
   action start { kind: inline }
   agent worker-a { model: sonnet phase: 1 prompt { You are worker-a. } }
   agent worker-b { model: haiku phase: 2 prompt { You are worker-b. } }
@@ -23,8 +29,14 @@ topology no-hooks : [pipeline] {
 // Topology WITH SubagentStop hook — should NOT warn
 const WITH_SUBAGENT_STOP_TOPOLOGY = `
 topology with-hooks : [pipeline] {
-  meta { version: "1.0.0" description: "Has SubagentStop hook" }
-  orchestrator { model: opus handles: [start] }
+  meta {
+    version: "1.0.0"
+    description: "Has SubagentStop hook"
+  }
+  orchestrator {
+    model: opus
+    handles: [start]
+  }
   action start { kind: inline }
   agent worker { model: sonnet phase: 1 prompt { You are worker. } }
   flow { start -> worker }
@@ -41,8 +53,14 @@ topology with-hooks : [pipeline] {
 // Topology WITH Stop hook — should NOT warn
 const WITH_STOP_TOPOLOGY = `
 topology with-stop : [pipeline] {
-  meta { version: "1.0.0" description: "Has Stop hook" }
-  orchestrator { model: opus handles: [start] }
+  meta {
+    version: "1.0.0"
+    description: "Has Stop hook"
+  }
+  orchestrator {
+    model: opus
+    handles: [start]
+  }
   action start { kind: inline }
   agent worker { model: sonnet phase: 1 prompt { You are worker. } }
   flow { start -> worker }
@@ -59,8 +77,14 @@ topology with-stop : [pipeline] {
 // Topology WITH enforced gate (compiles to SubagentStop) — should NOT warn
 const WITH_GATE_TOPOLOGY = `
 topology with-gate : [pipeline] {
-  meta { version: "1.0.0" description: "Has an enforced gate" }
-  orchestrator { model: opus handles: [start] }
+  meta {
+    version: "1.0.0"
+    description: "Has an enforced gate"
+  }
+  orchestrator {
+    model: opus
+    handles: [start]
+  }
   action start { kind: inline }
   agent worker { model: sonnet phase: 1 prompt { You are worker. } }
   flow { start -> worker }
@@ -77,8 +101,14 @@ topology with-gate : [pipeline] {
 // Zero-agent topology — should NOT warn
 const ZERO_AGENTS_TOPOLOGY = `
 topology zero-agents : [pipeline] {
-  meta { version: "1.0.0" description: "No agents" }
-  orchestrator { model: opus handles: [start, done] }
+  meta {
+    version: "1.0.0"
+    description: "No agents"
+  }
+  orchestrator {
+    model: opus
+    handles: [start, done]
+  }
   action start { kind: inline }
   action done { kind: report }
   flow { start -> done }

package/dist/analyzer/__tests__/observability-gap.test.js.map

@@ -1 +1 @@
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package/dist/analyzer/index.d.ts

@@ -3,7 +3,7 @@
  *
  * @module
  */
-import type { TopologyAST } from "../parser/ast.js";
+import type { TopologyAST, EdgeDef } from "../parser/ast.js";
 export interface TopologySummary {
     name: string;
     version: string;
@@ -41,5 +41,6 @@ export interface AnalysisResult {
     layers: LayerInfo[];
     suggestions: Suggestion[];
 }
+export declare function computeLayers(edges: EdgeDef[], nodeIds: Set<string>): LayerInfo[];
 export declare function analyze(ast: TopologyAST): AnalysisResult;
 //# sourceMappingURL=index.d.ts.map

package/dist/analyzer/index.d.ts.map

@@ -1 +1 @@
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package/dist/analyzer/index.js

@@ -40,7 +40,7 @@ function buildAdjacency(edges) {
 // ---------------------------------------------------------------------------
 // Layer computation (Kahn's algorithm)
 // ---------------------------------------------------------------------------
-function computeLayers(edges, nodeIds) {
+export function computeLayers(edges, nodeIds) {
     // Only consider forward edges (no back-edges with maxIterations)
     const forwardEdges = edges.filter((e) => !e.maxIterations);
     const inDegree = new Map();

package/dist/analyzer/index.js.map

@@ -1 +1 @@
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package/dist/bindings/__tests__/bindings.test.js

@@ -275,8 +275,14 @@ topology gate-target-test : [pipeline] {
     description: "Gate targeting test"
   }
 
-  orchestrator { model: opus handles: [intake] }
-  action intake { kind: external source: "user" }
+  orchestrator {
+    model: opus
+    handles: [intake]
+  }
+  action intake {
+    kind: external
+    source: "user"
+  }
 
   agent writer {
     model: sonnet
@@ -399,7 +405,10 @@ describe("claude-code binding — youtube-flywheel integration (#3)", () => {
 topology youtube-flywheel : [pipeline, fan-out, human-gate] {
   meta { version: "1.0.0" }
 
-  orchestrator { model: opus handles: [start] }
+  orchestrator {
+    model: opus
+    handles: [start]
+  }
   action start { kind: inline }
 
   agent briefer {
@@ -2339,7 +2348,10 @@ topology debate-test : [fan-out, debate, pipeline] {
 describe("claude-code binding — inline orchestrator delegation (#7)", () => {
     const INLINE_SOURCE = `
 topology inline-test : [pipeline] {
-  meta { version: "1.0.0" description: "Inline-orchestrator topology" }
+  meta {
+    version: "1.0.0"
+    description: "Inline-orchestrator topology"
+  }
   orchestrator {
     model: opus
     delegation: inline
@@ -2436,7 +2448,10 @@ describe("claude-code binding — default delegation: subagent (backward compat)
     const SUBAGENT_SOURCE = `
 topology subagent-test : [pipeline] {
   meta { version: "1.0.0" }
-  orchestrator { model: opus handles: [start] }
+  orchestrator {
+    model: opus
+    handles: [start]
+  }
   action start { kind: inline }
   agent writer {
     model: sonnet