agentix-cli 0.134.0 → 0.135.1

package/dist/chunk-DDEDSYLF.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/wiki/store.ts"],"sourcesContent":["import { readFileSync, writeFileSync, appendFileSync, existsSync, mkdirSync, readdirSync, statSync, type Stats } from \"fs\"\nimport { resolve, join, relative, dirname } from \"path\"\nimport { isWikiArticleType } from \"./types\"\nimport type { WikiArticle, WikiArticleMeta, WikiEntry, WikiIndex, WikiAccess } from \"./types\"\nimport { buildIndex, buildIndexCached, scoreAll } from \"../memory/bm25\"\nimport { askSeat } from \"../decisions/seat\"\nimport {\n  DEFAULT_SHORTLIST,\n  WIKI_RERANK_SEAT,\n  rerankQuestions,\n  rerankState,\n  toRanking,\n  type RerankCandidate,\n} from \"../decisions/seats/wiki-rerank\"\nimport { ancestryScore as ancestryOf } from \"@/graph\"\nimport { IMPORTANCE_LEVELS, type Importance, type WikiStatement } from \"./ontology/types\"\n\nfunction isImportance(s: string): s is Importance {\n  return (IMPORTANCE_LEVELS as readonly string[]).includes(s)\n}\n\n/** Read the one-line JSON `statements:` value. A statement without a\n *  property or value is dropped; a line that is not JSON drops them all,\n *  since a half-read list would show wrong facts as complete. */\nexport function parseStatements(line: string): WikiStatement[] | undefined {\n  if (!line) return undefined\n  let parsed: unknown\n  try {\n    parsed = JSON.parse(line)\n  } catch {\n    return undefined // not JSON: treat the page as having no statements\n  }\n  if (!Array.isArray(parsed)) return undefined\n  const out = parsed.filter((s): s is WikiStatement =>\n    typeof s === \"object\" && s !== null\n    && typeof (s as WikiStatement).property === \"string\" && (s as WikiStatement).property !== \"\"\n    && typeof (s as WikiStatement).value === \"string\" && (s as WikiStatement).value !== \"\")\n  return out.length ? out : undefined\n}\n\n// --- Wiki Store: filesystem-based knowledge base with permissions ---\n//\n// Structure:\n//   .agentx/wiki/\n//     _index.md          # Master index with aliases\n//     _backlinks.json    # Reverse link index\n//     raw/entries/        # One .md per ingested entry\n//     {directories}/     # Articles organized by type\n//\n// Permission model:\n//   - private: only owner agent reads/writes\n//   - shared: owner writes, listed agents read\n//   - public: owner writes, all agents read\n\n/**\n * Order version file names oldest first: by timestamp, then by the counter\n * suffix that saveVersion adds when two writes share a millisecond\n * (`<ts>.md` < `<ts>-1.md` < `<ts>-2.md` < ... < `<ts>-10.md`).\n */\nfunction compareVersionNames(a: string, b: string): number {\n  const split = (f: string): [string, number] => {\n    const m = /^(.*Z)(?:-(\\d+))?\\.md$/.exec(f)\n    return m ? [m[1], m[2] ? Number(m[2]) : 0] : [f, 0]\n  }\n  const [ta, na] = split(a)\n  const [tb, nb] = split(b)\n  return ta < tb ? -1 : ta > tb ? 1 : na - nb\n}\n\nexport class WikiStore {\n  readonly baseDir: string\n  private rawDir: string\n  private log: (...args: unknown[]) => void\n\n  constructor(\n    baseDir: string = resolve(process.cwd(), \".agentx/wiki\"),\n    log: (...args: unknown[]) => void = console.error.bind(console, \"[wiki]\"),\n  ) {\n    this.baseDir = baseDir\n    this.rawDir = resolve(baseDir, \"raw/entries\")\n    this.log = log\n\n    mkdirSync(this.rawDir, { recursive: true })\n    mkdirSync(resolve(baseDir, \"raw\"), { recursive: true })\n\n    // Initialize schema if missing\n    this.ensureSchema()\n  }\n\n  // --- Permission checks ---\n\n  /**\n   * Check if an agent can read an article.\n   */\n  canRead(article: WikiArticleMeta, agentId?: string): boolean {\n    if (article.access === \"public\") return true\n    if (!agentId) return false\n    if (article.owner === agentId) return true\n    if (article.access === \"shared\" && article.sharedWith?.includes(agentId)) return true\n    return false\n  }\n\n  /**\n   * Check if an agent can write an article.\n   */\n  canWrite(article: WikiArticleMeta, agentId: string): boolean {\n    return article.owner === agentId\n  }\n\n  // --- Raw entries (ingestion) ---\n\n  /**\n   * Add a raw entry (from a conversation, cron result, etc.)\n   */\n  addEntry(entry: WikiEntry): string {\n    const filename = `${entry.date}_${entry.id}.md`\n    const filepath = resolve(this.rawDir, filename)\n\n    const frontmatter = [\n      \"---\",\n      `id: ${entry.id}`,\n      `date: ${entry.date}`,\n      `agent: ${entry.agentId}`,\n      `source: ${entry.source}`,\n    ]\n    if (entry.sourceContext) frontmatter.push(`context: ${entry.sourceContext}`)\n    if (entry.meta) {\n      for (const [k, v] of Object.entries(entry.meta)) {\n        frontmatter.push(`${k}: ${JSON.stringify(v)}`)\n      }\n    }\n    frontmatter.push(\"---\", \"\", entry.content)\n\n    writeFileSync(filepath, frontmatter.join(\"\\n\"))\n    this.appendLog(\"ingest\", `${entry.id} from ${entry.agentId} via ${entry.source}`)\n    return filename\n  }\n\n  /** Read only the named entries. Files are `<date>_<id>.md`, so one\n   *  directory listing finds them without parsing the rest. */\n  readEntries(ids: string[]): WikiEntry[] {\n    if (ids.length === 0 || !existsSync(this.rawDir)) return []\n    const wanted = new Set(ids)\n    const out: WikiEntry[] = []\n    for (const file of readdirSync(this.rawDir)) {\n      const id = file.replace(/\\.md$/, \"\").replace(/^\\d{4}-\\d{2}-\\d{2}_/, \"\")\n      if (!wanted.has(id)) continue\n      const entry = this.parseEntry(readFileSync(resolve(this.rawDir, file), \"utf-8\"), file)\n      if (entry) out.push(entry)\n    }\n    return out\n  }\n\n  /**\n   * List raw entries, optionally filtered by agent or date range.\n   */\n  listEntries(filter?: { agentId?: string; after?: string; before?: string }): WikiEntry[] {\n    if (!existsSync(this.rawDir)) return []\n\n    const files = readdirSync(this.rawDir).filter(f => f.endsWith(\".md\")).sort()\n    const entries: WikiEntry[] = []\n\n    for (const file of files) {\n      const content = readFileSync(resolve(this.rawDir, file), \"utf-8\")\n      const entry = this.parseEntry(content, file)\n      if (!entry) continue\n\n      if (filter?.agentId && entry.agentId !== filter.agentId) continue\n      if (filter?.after && entry.date < filter.after) continue\n      if (filter?.before && entry.date > filter.before) continue\n\n      entries.push(entry)\n    }\n\n    return entries\n  }\n\n  private parseEntry(content: string, filename: string): WikiEntry | null {\n    const fmMatch = content.match(/^---\\n([\\s\\S]*?)\\n---\\n([\\s\\S]*)$/)\n    if (!fmMatch) return null\n\n    const fm = fmMatch[1]\n    const body = fmMatch[2].trim()\n\n    const get = (key: string): string => {\n      const m = fm.match(new RegExp(`^${key}:\\\\s*(.+)$`, \"m\"))\n      return m?.[1]?.trim() || \"\"\n    }\n\n    // Everything addEntry wrote that is not one of the five named keys is\n    // `meta`, JSON-encoded one key per line. Dropping it here is what made\n    // graphPath 0%: the capture path stamps intentPath onto every entry,\n    // `wiki absorb` reads entry.meta.intentPath to propagate it onto the\n    // article, and this parser never returned a meta at all — so absorb\n    // always fell through to a fingerprint lookup its own comment calls\n    // unreliable, and the retrieval scorer multiplied the graph weight\n    // (0.6 of the hybrid score) by zero for every article ever compiled.\n    const KNOWN = new Set([\"id\", \"date\", \"agent\", \"source\", \"context\"])\n    const meta: Record<string, unknown> = {}\n    for (const line of fm.split(\"\\n\")) {\n      const m = line.match(/^(\\w+):\\s*(.+)$/)\n      if (!m || KNOWN.has(m[1])) continue\n      try {\n        meta[m[1]] = JSON.parse(m[2])\n      } catch {\n        meta[m[1]] = m[2].trim()\n      }\n    }\n\n    return {\n      id: get(\"id\") || filename.replace(\".md\", \"\"),\n      date: get(\"date\"),\n      agentId: get(\"agent\"),\n      source: get(\"source\"),\n      sourceContext: get(\"context\") || undefined,\n      content: body,\n      meta: Object.keys(meta).length > 0 ? meta : undefined,\n    }\n  }\n\n  // --- Articles (compiled knowledge) ---\n\n  /**\n   * Write or update a wiki article.\n   */\n  writeArticle(\n    path: string,\n    meta: WikiArticleMeta,\n    content: string,\n    agentId: string,\n  ): boolean {\n    // LLM picks the path. We just write the file.\n    const existing = this.readArticle(path)\n    if (existing && !this.canWrite(existing.meta, agentId)) {\n      this.log(`Permission denied: \"${agentId}\" cannot write \"${path}\" (owner: ${existing.meta.owner})`)\n      return false\n    }\n\n    // Drop invalid `type` at write time. The parser already rejects invalid\n    // values on read (returns type=undefined), so silently serialising a\n    // stray value would cause the round-trip to look fine but the article\n    // to render as \"untyped\" in the catalog. Log + drop beats surprise.\n    if (meta.type && !isWikiArticleType(meta.type)) {\n      this.log(`Dropping invalid article type \"${meta.type}\" for \"${path}\" — enum is [person, project, place, concept, event, decision, pattern]`)\n      meta = { ...meta, type: undefined }\n    }\n\n    const fullPath = resolve(this.baseDir, path)\n\n    // Version the previous content before overwriting (immutable history)\n    if (existing) {\n      this.saveVersion(path, fullPath)\n    }\n\n    mkdirSync(dirname(fullPath), { recursive: true })\n\n    const frontmatter = [\n      \"---\",\n      `title: \"${meta.title}\"`,\n    ]\n    if (meta.type) frontmatter.push(`type: ${meta.type}`)\n    if (meta.related?.length) {\n      frontmatter.push(`related: [${meta.related.map(t => `\"${t}\"`).join(\", \")}]`)\n    }\n    frontmatter.push(\n      `tags: [${(meta.tags || []).map(t => `\"${t}\"`).join(\", \")}]`,\n      `owner: ${meta.owner}`,\n      `access: ${meta.access}`,\n    )\n    if (meta.sharedWith?.length) {\n      frontmatter.push(`shared_with: [${meta.sharedWith.map(s => `\"${s}\"`).join(\", \")}]`)\n    }\n    frontmatter.push(\n      `created: ${meta.created}`,\n      `last_updated: ${meta.lastUpdated}`,\n      `sources: [${meta.sources.map(s => `\"${s}\"`).join(\", \")}]`,\n    )\n    if (meta.graphPath?.length) {\n      frontmatter.push(`graph_path: [${meta.graphPath.map(s => `\"${s}\"`).join(\", \")}]`)\n    }\n    // Ontology fields (#811). Statements go on one line as JSON, which\n    // is also valid YAML, so the line-based reader below stays simple.\n    if (meta.class) frontmatter.push(`class: ${meta.class}`)\n    if (meta.importance) frontmatter.push(`importance: ${meta.importance}`)\n    if (meta.date) frontmatter.push(`date: ${meta.date}`)\n    if (meta.rolledUpInto) frontmatter.push(`rolled_up_into: ${JSON.stringify(meta.rolledUpInto)}`)\n    if (meta.aliases?.length) frontmatter.push(`aliases: ${JSON.stringify(meta.aliases)}`)\n    if (meta.statements?.length) frontmatter.push(`statements: ${JSON.stringify(meta.statements)}`)\n    frontmatter.push(\"---\", \"\", content)\n\n    writeFileSync(fullPath, frontmatter.join(\"\\n\"))\n    const action = existing ? \"update\" : \"create\"\n    this.appendLog(action, `${meta.title} [${(meta.tags || []).slice(0, 5).join(\", \")}] by ${agentId} at ${path}`)\n    return true\n  }\n\n  // --- Article Versioning ---\n\n  /**\n   * Save current article content as an immutable version before overwriting.\n   * Versions stored in _versions/{article-path}/{timestamp}.md\n   */\n  private saveVersion(articlePath: string, fullPath: string): void {\n    try {\n      if (!existsSync(fullPath)) return\n      const content = readFileSync(fullPath, \"utf-8\")\n      const ts = new Date().toISOString().replace(/[:.]/g, \"-\")\n      const versionDir = resolve(this.baseDir, \"_versions\", articlePath.replace(/\\.md$/, \"\"))\n      mkdirSync(versionDir, { recursive: true })\n      // Two writes inside one millisecond share a timestamp: the later one\n      // gets a counter suffix (`<ts>-1.md`, ...) instead of overwriting.\n      for (let n = 0; ; n++) {\n        try {\n          writeFileSync(resolve(versionDir, `${n ? `${ts}-${n}` : ts}.md`), content, { flag: \"wx\" })\n          return\n        } catch (err) {\n          if ((err as NodeJS.ErrnoException).code !== \"EEXIST\") throw err\n        }\n      }\n    } catch {\n      // Version save is best-effort\n    }\n  }\n\n  /**\n   * List all versions of an article (newest first).\n   */\n  getVersions(articlePath: string): Array<{ timestamp: string; path: string }> {\n    const versionDir = resolve(this.baseDir, \"_versions\", articlePath.replace(/\\.md$/, \"\"))\n    if (!existsSync(versionDir)) return []\n\n    try {\n      return readdirSync(versionDir)\n        .filter(f => f.endsWith(\".md\"))\n        .sort(compareVersionNames)\n        .reverse()\n        .map(f => ({\n          timestamp: f.replace(/\\.md$/, \"\").replace(/-/g, (m, i) => i < 19 ? (i === 10 ? \"T\" : i === 13 || i === 16 ? \":\" : \"-\") : m),\n          path: resolve(versionDir, f),\n        }))\n    } catch {\n      return []\n    }\n  }\n\n  /**\n   * Restore a specific version of an article.\n   */\n  restoreVersion(articlePath: string, versionTimestamp: string): boolean {\n    const versions = this.getVersions(articlePath)\n    const version = versions.find(v => v.timestamp === versionTimestamp)\n      ?? versions.find(v => v.timestamp.startsWith(versionTimestamp))\n    if (!version) return false\n\n    try {\n      const content = readFileSync(version.path, \"utf-8\")\n      const fullPath = resolve(this.baseDir, articlePath)\n      // Save current as a version too before restoring\n      this.saveVersion(articlePath, fullPath)\n      writeFileSync(fullPath, content)\n      this.appendLog(\"restore\", `${articlePath} restored to ${versionTimestamp}`)\n      return true\n    } catch {\n      return false\n    }\n  }\n\n  /**\n   * Read an article. Returns null if not found.\n   */\n  readArticle(path: string): WikiArticle | null {\n    const fullPath = resolve(this.baseDir, path)\n    if (!existsSync(fullPath)) return null\n\n    const raw = readFileSync(fullPath, \"utf-8\")\n    return this.parseArticle(raw, path)\n  }\n\n  /**\n   * Read an article with permission check.\n   */\n  readArticleAs(path: string, agentId: string): WikiArticle | null {\n    const article = this.readArticle(path)\n    if (!article) return null\n    if (!this.canRead(article.meta, agentId)) return null\n    return article\n  }\n\n  private parseArticle(raw: string, path: string): WikiArticle | null {\n    const fmMatch = raw.match(/^---\\n([\\s\\S]*?)\\n---\\n([\\s\\S]*)$/)\n    if (!fmMatch) return null\n\n    const fm = fmMatch[1]\n    const content = fmMatch[2].trim()\n\n    const get = (key: string): string => {\n      const m = fm.match(new RegExp(`^${key}:\\\\s*(.+)$`, \"m\"))\n      return m?.[1]?.trim().replace(/^\"(.*)\"$/, \"$1\") || \"\"\n    }\n\n    const getArray = (key: string): string[] => {\n      const m = fm.match(new RegExp(`^${key}:\\\\s*\\\\[(.*)\\\\]$`, \"m\"))\n      if (!m) return []\n      // Quoted items may hold commas — related titles often do, e.g.\n      // \"Reviewed: NOT READY, Then READY\". Unquoted legacy items may not.\n      // Items are written unescaped, so a quoted item may also hold quotes\n      // (\"Carbon \"12 M\" Fix\"): it ends only at a quote before a comma or the end.\n      return [...m[1].matchAll(/\\s*(?:\"(.*?)\"(?=\\s*(?:,|$))|([^,]+))/g)]\n        .map(x => (x[1] ?? x[2]).trim())\n        .filter(Boolean)\n    }\n\n    // `type` and `kind` are the new structural spine; no longer stuffed into tags.\n    // Legacy articles may have a `kind:` field; we promote it to `type` on read so\n    // the migration (Phase 2) can patch it in place.\n    const rawType = get(\"type\") || get(\"kind\")\n    const validTypes = new Set([\n      \"person\", \"project\", \"place\", \"concept\", \"event\", \"decision\", \"pattern\",\n    ])\n    const type = validTypes.has(rawType) ? (rawType as WikiArticleMeta[\"type\"]) : undefined\n\n    const tags = getArray(\"tags\").filter((v, i, a) => v && a.indexOf(v) === i)\n    const related = getArray(\"related\")\n    const graphPath = getArray(\"graph_path\")\n    const aliases = getArray(\"aliases\")\n    const importance = get(\"importance\")\n    const date = get(\"date\")\n    return {\n      meta: {\n        title: get(\"title\"),\n        type,\n        related: related.length ? related : undefined,\n        tags,\n        owner: get(\"owner\"),\n        access: (get(\"access\") as WikiAccess) || \"public\",\n        sharedWith: getArray(\"shared_with\"),\n        created: get(\"created\"),\n        lastUpdated: get(\"last_updated\"),\n        sources: getArray(\"sources\"),\n        graphPath: graphPath.length ? graphPath : undefined,\n        class: /^[a-z][a-z0-9_]*$/.test(get(\"class\")) ? get(\"class\") : undefined,\n        importance: isImportance(importance) ? importance : undefined,\n        date: /^\\d{4}-\\d{2}-\\d{2}/.test(date) ? date.slice(0, 10) : undefined,\n        rolledUpInto: get(\"rolled_up_into\") || undefined,\n        aliases: aliases.length ? aliases : undefined,\n        statements: parseStatements(get(\"statements\")),\n      },\n      content,\n      path,\n    }\n  }\n\n  // --- Index and discovery ---\n\n  /**\n   * List all articles accessible to an agent.\n   */\n  /** Catalog per agent, valid while no article file changed. The walk is\n   *  repeated (names, mtimes, sizes) but the frontmatter parse of every\n   *  article is not; on a wiki of ten thousand files that parse was the\n   *  cost of every fresh session. */\n  private listCache = new Map<string, { signature: string; articles: WikiArticle[] }>()\n\n  listArticles(agentId: string): WikiArticle[] {\n    return this.listCached(agentId)\n  }\n\n  /** Every article whatever its access, for the owner's own views. */\n  listAllArticles(): WikiArticle[] {\n    return this.listCached(null)\n  }\n\n  private listCached(agentId: string | null): WikiArticle[] {\n    const relPaths: string[] = []\n    const sig: string[] = []\n    this.walkDir(this.baseDir, (filePath, stat) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\")) return\n      relPaths.push(relPath)\n      sig.push(`${relPath}:${stat?.mtimeMs ?? \"?\"}:${stat?.size ?? \"?\"}`)\n    })\n    const signature = sig.join(\"|\")\n    const key = agentId ?? \"\\u0000all\"\n    const hit = this.listCache.get(key)\n    if (hit && hit.signature === signature) return hit.articles.slice()\n\n    const articles: WikiArticle[] = []\n    for (const relPath of relPaths) {\n      const article = this.readArticle(relPath)\n      if (article && (agentId === null || this.canRead(article.meta, agentId))) {\n        articles.push(article)\n      }\n    }\n    this.listCache.set(key, { signature, articles })\n    return articles.slice()\n  }\n\n  /**\n   * Search articles by keyword. Returns articles the agent can read.\n   */\n  search(query: string, agentId: string, maxResults: number = 10): WikiArticle[] {\n    const queryLower = query.toLowerCase()\n    const articles: WikiArticle[] = []\n\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\")) return\n\n      const article = this.readArticle(relPath)\n      if (!article || !this.canRead(article.meta, agentId)) return\n      articles.push(article)\n    })\n\n    if (articles.length === 0) return []\n\n    // BM25 over article content (cached to disk)\n    const docs = articles.map((a) => a.content)\n    const cachePath = resolve(this.baseDir, \"_bm25_cache.json\")\n    const index = buildIndexCached(docs, cachePath)\n    const bm25Scores = scoreAll(query, index)\n    const scoreMap = new Map(bm25Scores.map((r) => [r.docIndex, r.score]))\n\n    const results = articles.map((article, i) => {\n      let score = scoreMap.get(i) ?? 0\n      // Additive bonuses for title and tag matches\n      if (article.meta.title.toLowerCase().includes(queryLower)) score += 10\n      if (article.meta.tags?.some(t => t.toLowerCase().includes(queryLower))) score += 5\n      return { article, score }\n    })\n\n    return results\n      .filter((r) => r.score > 0)\n      .sort((a, b) => b.score - a.score)\n      .slice(0, maxResults)\n      .map((r) => r.article)\n  }\n\n  /**\n   * findRelevant, then re-ranked by the wiki-rerank seat.\n   *\n   * Recall comes from findRelevant rather than search() because\n   * findRelevant is the function everything actually calls — search()\n   * turned out to have no callers at all. Additive on purpose: the\n   * synchronous findRelevant is untouched and its existing callers stay\n   * as they are. Measured on the 12-query eval against this\n   * wiki, re-ranking moves R@1 from 33.3% to 50.0% and R@3 from 41.7% to\n   * 66.7%, for about $0.0005 and 550ms a query.\n   *\n   * Fail-open in every direction. Seat off, backend down, no key, fewer\n   * than two candidates — all return BM25's own order, which is what the\n   * caller would have got anyway.\n   *\n   * Note what this cannot do: it only reorders what BM25 shortlisted. In\n   * the eval R@3 sat exactly on that ceiling, so every remaining miss was\n   * an article BM25 never returned. Widening the shortlist does not fix\n   * that — past 30 the extra candidates measurably diluted the ranking.\n   */\n  async findRelevantReranked(\n    query: string,\n    agentId?: string,\n    maxResults = 10,\n    opts: { shortlist?: number; excerptChars?: number } = {},\n  ): Promise<WikiArticle[]> {\n    const shortlist = Math.max(maxResults, opts.shortlist ?? DEFAULT_SHORTLIST)\n    const pool = this.findRelevant(query, agentId, shortlist)\n    if (pool.length < 2) return pool.slice(0, maxResults)\n\n    const candidates: RerankCandidate[] = pool.map((article, i) => ({\n      // Index, not title: titles are not unique across a wiki and a\n      // Choice needs distinct keys.\n      id: `c${i}`,\n      title: article.meta.title || `(untitled ${i})`,\n      tags: article.meta.tags,\n      excerpt: article.content,\n    }))\n\n    const result = await askSeat(\n      WIKI_RERANK_SEAT,\n      rerankState({ query, candidates, excerptChars: opts.excerptChars }),\n      rerankQuestions(candidates),\n      { incumbent: { best: candidates[0].id }, features: { agent: agentId ?? \"unknown\" } },\n    )\n    if (!result || result.mode !== \"active\") return pool.slice(0, maxResults)\n\n    const ranking = toRanking(result.answers as never, candidates)\n    return ranking.ranked\n      .map((id) => pool[Number(id.slice(1))])\n      .filter((a): a is WikiArticle => Boolean(a))\n      .slice(0, maxResults)\n  }\n\n  /**\n   * Find articles relevant to a message (for context injection).\n   *\n   * Scoring:\n   *   - BM25 over title+tags+content (always)\n   *   - + ancestry bonus if the caller classified the message through the\n   *     intent graph and articles carry `graphPath` from a previous classification\n   *\n   * `weights.graph` is scaled against `weights.bm25`. When the caller omits\n   * `messagePath`, retrieval collapses to pure BM25 and matches legacy behavior.\n   */\n  findRelevant(\n    message: string,\n    agentId?: string,\n    maxArticles: number = 3,\n    messagePath?: string[],\n    weights: { graph: number; bm25: number } = { graph: 0.6, bm25: 0.4 },\n  ): WikiArticle[] {\n    const articles: WikiArticle[] = []\n\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\")) return\n\n      const article = this.readArticle(relPath)\n      if (!article || !this.canRead(article.meta, agentId)) return\n      articles.push(article)\n    })\n\n    if (articles.length === 0) return []\n\n    const docs = articles.map(\n      (a) => `${a.meta.title} ${(a.meta.tags || []).join(\" \")} ${a.content}`,\n    )\n    const cachePath = resolve(this.baseDir, \"_bm25_relevance_cache.json\")\n    const index = buildIndexCached(docs, cachePath)\n    const bm25Scores = scoreAll(message, index)\n\n    // Normalize BM25 so the two signals live on [0,1] before the weighted sum.\n    const maxBm25 = bm25Scores.reduce((m, s) => Math.max(m, s.score), 0) || 1\n    const bm25Map = new Map(bm25Scores.map((s) => [s.docIndex, s.score / maxBm25]))\n\n    const hasGraph = !!(messagePath && messagePath.length > 0)\n    const scored = articles.map((article, i) => {\n      const bm25 = bm25Map.get(i) ?? 0\n      let ancestry = 0\n      if (hasGraph && article.meta.graphPath?.length) {\n        ancestry = ancestryOf(messagePath!, article.meta.graphPath)\n      }\n      // When the caller passed no path, BM25 gets the full weight.\n      const combined = hasGraph\n        ? weights.graph * ancestry + weights.bm25 * bm25\n        : bm25\n      return { article, score: combined }\n    })\n\n    return scored\n      .filter((r) => r.score > 0)\n      .sort((a, b) => b.score - a.score)\n      .slice(0, maxArticles)\n      .map((r) => r.article)\n  }\n\n  /**\n   * Build context string from relevant wiki articles for prompt injection.\n   * Token-efficient: includes title + first ~500 chars of each article.\n   */\n  buildContext(articles: WikiArticle[], maxChars: number = 4000): string {\n    if (articles.length === 0) return \"\"\n\n    const lines: string[] = [\"[Wiki Knowledge]\"]\n\n    let totalChars = 0\n    for (const article of articles) {\n      const header = `\\n## ${article.meta.title} [${(article.meta.tags || []).slice(0, 3).join(\", \")}]`\n      const body = article.content.length > 600\n        ? article.content.slice(0, 600) + \"...\"\n        : article.content\n\n      const chunk = header + \"\\n\" + body\n      if (totalChars + chunk.length > maxChars) break\n\n      lines.push(chunk)\n      totalChars += chunk.length\n    }\n\n    lines.push(\"\\n[End Wiki Knowledge]\")\n    return lines.join(\"\\n\")\n  }\n\n  /**\n   * Rebuild the master index.\n   */\n  rebuildIndex(): WikiIndex {\n    const articles: WikiIndex[\"articles\"] = []\n    const backlinks = new Map<string, number>()\n\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\")) return\n\n      const article = this.readArticle(relPath)\n      if (!article) return\n\n      // Count wikilinks for backlinks\n      const links = article.content.match(/\\[\\[([^\\]]+)\\]\\]/g) || []\n      for (const link of links) {\n        const target = link.replace(/\\[\\[|\\]\\]/g, \"\")\n        backlinks.set(target, (backlinks.get(target) || 0) + 1)\n      }\n\n      // Extract aliases from title and tags\n      const aliases = [article.meta.title.toLowerCase()]\n      if (article.meta.tags) {\n        aliases.push(...article.meta.tags.map(t => t.toLowerCase()))\n      }\n\n      articles.push({\n        path: relPath,\n        title: article.meta.title,\n        type: article.meta.type,\n        related: article.meta.related,\n        tags: article.meta.tags || [],\n        owner: article.meta.owner,\n        access: article.meta.access,\n        sharedWith: article.meta.sharedWith,\n        aliases,\n        backlinks: backlinks.get(article.meta.title) || 0,\n        sources: article.meta.sources,\n        lastUpdated: article.meta.lastUpdated,\n        graphPath: article.meta.graphPath,\n      })\n    })\n\n    const index: WikiIndex = {\n      articles,\n      lastRebuilt: new Date().toISOString(),\n    }\n\n    // Machine-readable index\n    writeFileSync(\n      resolve(this.baseDir, \"_index.json\"),\n      JSON.stringify(index, null, 2),\n    )\n\n    // Farzapedia-style content catalog at _index.md — the one file the\n    // agentic query reads to pick candidate articles by `type` + title.\n    // Load-bearing in Phase 3; grouped by type, alphabetical within group.\n    this.writeCatalog(articles, index.lastRebuilt)\n\n    // Human-readable WIKI.md — legacy view, grouped by access level.\n    const md = [\"# Wiki Index\", \"\", `Last rebuilt: ${index.lastRebuilt}`, \"\"]\n    const byAccess = new Map<string, typeof articles>()\n    for (const a of articles) {\n      const bucket = a.access || \"public\"\n      const list = byAccess.get(bucket) || []\n      list.push(a)\n      byAccess.set(bucket, list)\n    }\n    for (const [bucket, list] of Array.from(byAccess.entries()).sort()) {\n      md.push(`## ${bucket}`, \"\")\n      for (const a of list.sort((x, y) => x.title.localeCompare(y.title))) {\n        const t = a.type ? ` [${a.type}]` : \"\"\n        md.push(`- [${a.title}](${a.path})${t} — owner: ${a.owner}`)\n      }\n      md.push(\"\")\n    }\n    writeFileSync(resolve(this.baseDir, \"WIKI.md\"), md.join(\"\\n\"))\n\n    this.log(`Index rebuilt: ${articles.length} articles`)\n    this.appendLog(\"rebuild-index\", `${articles.length} articles indexed`)\n    return index\n  }\n\n  /**\n   * Write `_index.md` — the Farzapedia-style content catalog grouped by\n   * article `type`. This is the one file the agentic query (Phase 3) reads\n   * to pick candidate articles before walking the wikilink subgraph.\n   *\n   * Articles without a `type` land in \"Untyped\" at the bottom; the Phase 2\n   * migration backfills those.\n   */\n  private writeCatalog(\n    articles: WikiIndex[\"articles\"],\n    lastRebuilt: string,\n  ): void {\n    const typeOrder: Array<NonNullable<WikiArticleMeta[\"type\"]> | \"untyped\"> = [\n      \"person\", \"project\", \"place\", \"concept\", \"event\", \"decision\", \"pattern\", \"untyped\",\n    ]\n    const typeHeaders: Record<string, string> = {\n      person: \"## People\",\n      project: \"## Projects\",\n      place: \"## Places\",\n      concept: \"## Concepts\",\n      event: \"## Events\",\n      decision: \"## Decisions\",\n      pattern: \"## Patterns\",\n      untyped: \"## Untyped (needs migration)\",\n    }\n\n    const byType = new Map<string, typeof articles>()\n    for (const a of articles) {\n      const bucket = a.type || \"untyped\"\n      const list = byType.get(bucket) || []\n      list.push(a)\n      byType.set(bucket, list)\n    }\n\n    const lines: string[] = [\n      \"# Wiki Content Catalog\",\n      \"\",\n      `_Last rebuilt: ${lastRebuilt}_`,\n      \"\",\n      \"Articles grouped by type. Agentic query walks this file first to pick candidates.\",\n      \"\",\n    ]\n\n    for (const type of typeOrder) {\n      const list = byType.get(type)\n      if (!list || list.length === 0) continue\n      lines.push(typeHeaders[type] || `## ${type}`, \"\")\n      for (const a of list.sort((x, y) => x.title.localeCompare(y.title))) {\n        const access = a.access === \"private\" ? \" (private)\" : a.access === \"shared\" ? \" (shared)\" : \"\"\n        const related = a.related?.length ? ` → [[${a.related.slice(0, 3).join(\"]], [[\")}]]${a.related.length > 3 ? \", …\" : \"\"}` : \"\"\n        lines.push(`- [${a.title}](${a.path})${access}${related}`)\n      }\n      lines.push(\"\")\n    }\n\n    writeFileSync(resolve(this.baseDir, \"_index.md\"), lines.join(\"\\n\"))\n  }\n\n  /**\n   * Get wiki stats.\n   */\n  stats(): {\n    totalArticles: number\n    totalEntries: number\n    articlesByType: Record<string, number>\n    articlesByAccess: Record<string, number>\n    articlesByOwner: Record<string, number>\n  } {\n    let totalArticles = 0\n    const byType: Record<string, number> = {}\n    const byAccess: Record<string, number> = {}\n    const byOwner: Record<string, number> = {}\n\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\") || relPath === \"WIKI.md\") return\n\n      const article = this.readArticle(relPath)\n      if (!article) return\n\n      totalArticles++\n      for (const tag of (article.meta.tags || [])) {\n        byType[tag] = (byType[tag] || 0) + 1\n      }\n      byAccess[article.meta.access] = (byAccess[article.meta.access] || 0) + 1\n      byOwner[article.meta.owner] = (byOwner[article.meta.owner] || 0) + 1\n    })\n\n    const entryFiles = existsSync(this.rawDir)\n      ? readdirSync(this.rawDir).filter(f => f.endsWith(\".md\")).length\n      : 0\n\n    return {\n      totalArticles,\n      totalEntries: entryFiles,\n      articlesByType: byType,\n      articlesByAccess: byAccess,\n      articlesByOwner: byOwner,\n    }\n  }\n\n  // --- Helpers ---\n\n  // --- Log (chronological, append-only) ---\n\n  /**\n   * Append an entry to log.md.\n   * Format: ## [YYYY-MM-DD HH:MM] action | details\n   */\n  appendLog(action: string, details: string): void {\n    const logPath = resolve(this.baseDir, \"log.md\")\n    const timestamp = new Date().toISOString().replace(\"T\", \" \").slice(0, 16)\n    const entry = `## [${timestamp}] ${action} | ${details}\\n\\n`\n\n    if (!existsSync(logPath)) {\n      writeFileSync(logPath, \"# Wiki Log\\n\\nChronological record of all wiki operations.\\n\\n\")\n    }\n\n    appendFileSync(logPath, entry)\n  }\n\n  /**\n   * Get recent log entries.\n   */\n  getLog(limit: number = 20): string[] {\n    const logPath = resolve(this.baseDir, \"log.md\")\n    if (!existsSync(logPath)) return []\n\n    const content = readFileSync(logPath, \"utf-8\")\n    const entries = content.split(/^## /m).filter(e => e.startsWith(\"[\")).slice(-limit)\n    return entries.map(e => e.trim())\n  }\n\n  // --- Schema ---\n\n  /**\n   * Create _schema.md if it doesn't exist.\n   * This tells the LLM how to operate on the wiki.\n   */\n  private ensureSchema(): void {\n    const schemaPath = resolve(this.baseDir, \"_schema.md\")\n    if (existsSync(schemaPath)) return\n\n    const schema = `# Wiki Schema\n\nA personal wiki maintained by LLMs. Karpathy pattern: plain files, aggressive tagging,\nstructure emerges from data. The wiki is a compounding artifact.\n\n## Structure\n\n\\`\\`\\`\nwiki/\n  _schema.md         # This file\n  worldview.md       # YOUR mental model — the LLM reads this during absorb\n  raw/entries/       # Immutable raw sources (conversations, imports, anything)\n  [LLM-chosen dirs]  # Structure emerges from data — the LLM picks paths\n\\`\\`\\`\n\nThe LLM decides how to organize articles. You describe YOUR world in worldview.md.\n\n## Article Format\n\n\\`\\`\\`yaml\n---\ntitle: \"Staging Deployment Process\"\ntags: [\"deploy\", \"staging\", \"devops\", \"process\", \"2026-04-06\"]\nowner: devops-agent\naccess: public\ncreated: 2026-04-06\nlast_updated: 2026-04-06\nsources: [\"entry-id-1\", \"entry-id-2\"]\n---\n\nArticle content with [[wikilinks]] and section tags.\n\n## Deploy Steps\n<!-- tags: process, runbook, staging -->\nContent specific to this section...\n\\`\\`\\`\n\n## Tags\n\nTags are the primary context-narrowing mechanism. The more tags, the better.\n\nTag aggressively:\n- **Who**: people, agents, teams involved\n- **What**: project, client, topic, technology\n- **When**: dates, periods, milestones\n- **Where**: server, environment, channel\n- **How**: process, decision, pattern\n- **Your terms**: whatever vocabulary makes sense in YOUR world\n\nSection tags (\\`<!-- tags: ... -->\\`) let different parts of an article\nmatch different queries. A deploy article might have sections tagged\n\"runbook\" and \"incident\" separately.\n\n## Operations\n\n### Absorb\nRead raw entries → read worldview.md → tag aggressively → create/update articles.\nAlso identify GAPS: \"We mention X but have no article for it.\"\n\n### Query\nMatch by tags first → then keyword within matched articles → synthesize.\nIf agent is working on a specific project, only send content tagged for that project.\n\n### Lint\nCheck for: orphan articles, broken [[wikilinks]], untagged articles,\narticles over 100 lines that should split, mentioned-but-missing topics.\n\n## Worldview\n\nEdit \\`worldview.md\\` to describe YOUR world. This is not a schema — it's your\nmental model. The LLM reads it during absorb to understand where things go.\n\nExample worldview.md:\n\\`\\`\\`\nI'm the founder of Acme Corp.\nWe build software products.\nOur agents: Marketing Bot, DevOps Bot, Coordinator.\nClients: ClientA (enterprise), ClientB (startup).\nInfrastructure: local dev machine, cloud server.\nWe use GitLab for version control.\n\\`\\`\\`\n`\n\n    writeFileSync(schemaPath, schema)\n    this.log(\"Created _schema.md\")\n  }\n\n  // --- Wikilinks and Backlinks ---\n\n  /**\n   * Extract all [[wikilinks]] from article content.\n   */\n  extractWikilinks(content: string): string[] {\n    const matches = content.match(/\\[\\[([^\\]]+)\\]\\]/g) || []\n    return matches.map(m => m.replace(/\\[\\[|\\]\\]/g, \"\"))\n  }\n\n  /**\n   * Build backlinks index: for each article, which other articles link to it.\n   */\n  buildBacklinks(): Record<string, string[]> {\n    const backlinks: Record<string, string[]> = {}\n\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\") || relPath === \"WIKI.md\" || relPath === \"log.md\") return\n\n      const content = readFileSync(filePath, \"utf-8\")\n      const links = this.extractWikilinks(content)\n\n      for (const link of links) {\n        if (!backlinks[link]) backlinks[link] = []\n        backlinks[link].push(relPath)\n      }\n    })\n\n    // Save\n    writeFileSync(\n      resolve(this.baseDir, \"_backlinks.json\"),\n      JSON.stringify(backlinks, null, 2),\n    )\n\n    return backlinks\n  }\n\n  /**\n   * Get backlinks for a specific article title.\n   */\n  getBacklinks(title: string): string[] {\n    const path = resolve(this.baseDir, \"_backlinks.json\")\n    if (!existsSync(path)) return []\n    try {\n      const data = JSON.parse(readFileSync(path, \"utf-8\"))\n      return data[title] || []\n    } catch {\n      return []\n    }\n  }\n\n  // --- Tag-based filtering (Karpathy: tags are the context narrowing mechanism) ---\n\n  /**\n   * Find articles matching ANY of the given tags.\n   * This is how agents get relevant context — only articles tagged with\n   * the client/project/topic they're working on.\n   */\n  findByTags(tags: string[], agentId?: string, limit: number = 10): WikiArticle[] {\n    const lowerTags = tags.map(t => t.toLowerCase())\n    const results: Array<{ article: WikiArticle; score: number }> = []\n\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\")) return\n\n      const article = this.readArticle(relPath)\n      if (!article) return\n      if (agentId && !this.canRead(article.meta, agentId)) return\n\n      // Score: how many of the requested tags match?\n      const articleTags = (article.meta.tags || []).map(t => t.toLowerCase())\n      // Also check section tags: <!-- tags: foo, bar -->\n      const sectionTags = (article.content.match(/<!--\\s*tags?:\\s*([^>]+)\\s*-->/gi) || [])\n        .flatMap(m => m.replace(/<!--\\s*tags?:\\s*|\\s*-->/gi, \"\").split(\",\").map(t => t.trim().toLowerCase()))\n\n      const allTags = [...articleTags, ...sectionTags]\n      const score = lowerTags.filter(t => allTags.includes(t)).length\n\n      if (score > 0) {\n        results.push({ article, score })\n      }\n    })\n\n    return results\n      .sort((a, b) => b.score - a.score)\n      .slice(0, limit)\n      .map(r => r.article)\n  }\n\n  /**\n   * Get all unique tags across all articles.\n   */\n  getAllTags(): Map<string, number> {\n    const tagCounts = new Map<string, number>()\n\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\")) return\n\n      const article = this.readArticle(relPath)\n      if (!article?.meta.tags) return\n\n      for (const tag of article.meta.tags) {\n        tagCounts.set(tag, (tagCounts.get(tag) || 0) + 1)\n      }\n    })\n\n    return tagCounts\n  }\n\n  // --- Worldview (user's mental model — input to absorb) ---\n\n  /**\n   * Get the worldview file. This is the user's description of their world —\n   * the LLM uses it during absorb to know where things go.\n   * Returns null if not set.\n   */\n  getWorldview(): string | null {\n    const path = resolve(this.baseDir, \"worldview.md\")\n    if (!existsSync(path)) return null\n    return readFileSync(path, \"utf-8\")\n  }\n\n  /**\n   * Set the worldview. The user describes their world: companies, clients,\n   * projects, team, processes. The LLM uses this as context during absorb.\n   */\n  setWorldview(content: string): void {\n    writeFileSync(resolve(this.baseDir, \"worldview.md\"), content)\n    this.appendLog(\"worldview\", \"Updated worldview\")\n  }\n\n  // --- Lint ---\n\n  /**\n   * Run a lint pass on the wiki. Returns issues found.\n   */\n  lint(): Array<{ type: string; article: string; message: string }> {\n    const issues: Array<{ type: string; article: string; message: string }> = []\n    const allTitles = new Set<string>()\n    const allLinks = new Map<string, string[]>() // article -> outbound links\n    const articlePaths = new Map<string, string>() // title -> path\n\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\") || relPath === \"WIKI.md\" || relPath === \"log.md\") return\n\n      const article = this.readArticle(relPath)\n      if (!article) return\n\n      allTitles.add(article.meta.title)\n      articlePaths.set(article.meta.title, relPath)\n\n      const links = this.extractWikilinks(article.content)\n      allLinks.set(relPath, links)\n\n      // Check: article too long\n      const lines = article.content.split(\"\\n\").length\n      if (lines > 100) {\n        issues.push({\n          type: \"bloated\",\n          article: relPath,\n          message: `${lines} lines — consider splitting`,\n        })\n      }\n\n      // Check: no sources\n      if (!article.meta.sources?.length) {\n        issues.push({\n          type: \"unsourced\",\n          article: relPath,\n          message: \"No sources listed in frontmatter\",\n        })\n      }\n\n      // Check: stub (too short)\n      if (lines < 10 && article.content.trim().length < 100) {\n        issues.push({\n          type: \"stub\",\n          article: relPath,\n          message: \"Very short article — needs enrichment\",\n        })\n      }\n    })\n\n    // Check: broken wikilinks\n    for (const [articlePath, links] of allLinks) {\n      for (const link of links) {\n        if (!allTitles.has(link)) {\n          issues.push({\n            type: \"broken-link\",\n            article: articlePath,\n            message: `[[${link}]] — target article not found`,\n          })\n        }\n      }\n    }\n\n    // Check: orphan articles (no inbound links)\n    const backlinks = this.buildBacklinks()\n    for (const [title, path] of articlePaths) {\n      if (!backlinks[title] || backlinks[title].length === 0) {\n        issues.push({\n          type: \"orphan\",\n          article: path,\n          message: `No other articles link to \"${title}\"`,\n        })\n      }\n    }\n\n    this.appendLog(\"lint\", `Found ${issues.length} issues`)\n    return issues\n  }\n\n  // --- Absorb summary (for automated cron) ---\n\n  /**\n   * Get unabsorbed entries (entries not referenced by any article's sources field).\n   */\n  getUnabsorbedEntries(): WikiEntry[] {\n    const allSources = new Set<string>()\n\n    // Collect all source IDs referenced by articles\n    this.walkDir(this.baseDir, (filePath) => {\n      if (!filePath.endsWith(\".md\")) return\n      const relPath = relative(this.baseDir, filePath)\n      if (relPath.startsWith(\"raw/\") || relPath.startsWith(\"_\")) return\n\n      const article = this.readArticle(relPath)\n      if (article?.meta.sources) {\n        for (const s of article.meta.sources) allSources.add(s)\n      }\n    })\n\n    // Find entries not in any article's sources\n    const entries = this.listEntries()\n    return entries.filter(e => !allSources.has(e.id))\n  }\n\n  /**\n   * Build an absorb prompt for unprocessed entries.\n   * Returns a prompt string an agent can execute to compile entries into articles.\n   */\n  buildAbsorbPrompt(maxEntries: number = 20): string | null {\n    const unabsorbed = this.getUnabsorbedEntries().slice(0, maxEntries)\n    if (unabsorbed.length === 0) return null\n\n    const entrySummaries = unabsorbed.map(e =>\n      `[${e.date} ${e.agentId} via ${e.source}] ${e.content.slice(0, 200)}`\n    ).join(\"\\n\\n\")\n\n    return `/wiki absorb\\n\\nThere are ${unabsorbed.length} unprocessed entries. Read each, understand what it means, and create or update wiki articles.\\n\\n${entrySummaries}`\n  }\n\n  private walkDir(dir: string, callback: (filePath: string, stat?: Stats) => void): void {\n    if (!existsSync(dir)) return\n    for (const entry of readdirSync(dir)) {\n      const full = join(dir, entry)\n      const stat = statSync(full)\n      if (stat.isDirectory()) {\n        this.walkDir(full, callback)\n      } else {\n        callback(full, stat)\n      }\n    }\n  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@@ -1 +0,0 @@
-{"version":3,"sources":["../src/wiki/ontology/roster.ts","../src/wiki/ontology/classify.ts","../src/wiki/ontology/graph.ts"],"sourcesContent":["// --- Names the fleet's agents go by, so their pages are not people (#819) ---\n//\n// Old pages about an agent often carry `type: person` and a title that is\n// just the agent's name (\"Helper\", or a persona name). The classify rules\n// only catch titles with \"agent\" or \"bot\" in them. The roster lists every\n// name an agent answers to: its id, its configured name, the persona name\n// in its workspace, and any extra names the owner lists under\n// `agent_names` in ontology.yaml (agents on another node, for example).\n// Deterministic: no model call.\n\nimport { existsSync, readFileSync, statSync } from \"fs\"\nimport { resolve } from \"path\"\nimport { normName } from \"./graph\"\n\n/** Normalised name → agent id. */\nexport type AgentRoster = Map<string, string>\n\nexport interface RosterAgent {\n  id: string\n  name?: string\n  /** Persona name read from the agent's workspace. */\n  persona?: string\n}\n\nexport function buildRoster(agents: RosterAgent[], extraNames: string[] = []): AgentRoster {\n  const roster: AgentRoster = new Map()\n  const add = (name: string | undefined, id: string): void => {\n    const key = name ? normName(name) : \"\"\n    if (key && !roster.has(key)) roster.set(key, id)\n  }\n  for (const a of agents) {\n    // An agent named \"<id> Agent\" is named after a person: the bare id\n    // is that person's name, so only the full name points at the agent.\n    if (!a.name || normName(a.name) !== `${normName(a.id)} agent`) add(a.id, a.id)\n    add(a.name, a.id)\n    add(a.persona, a.id)\n  }\n  for (const n of extraNames) add(n, n)\n  return roster\n}\n\n/** The agent a title or alias names, if any. \"<name> agent\" counts too. */\nexport function rosterMatch(roster: AgentRoster, names: string[]): string | undefined {\n  for (const n of names) {\n    const key = normName(n)\n    const hit = roster.get(key) ?? roster.get(key.replace(/ (agent|bot)$/, \"\"))\n    if (hit) return hit\n    // \"Release Helper (release_helper_bot)\": an agent name, then its handle.\n    if (/ (agent|bot)( |$)/.test(key)) {\n      for (const [name, id] of roster) if (key.startsWith(`${name} `)) return id\n    }\n  }\n  return undefined\n}\n\nconst PERSONA_FILES = [\"IDENTITY.md\", \"persona.md\", \"PERSONA.md\"]\n\n/** `**Name:** Nova (…)` → \"Nova\". Only a short single name counts. */\nexport function personaName(text: string): string | undefined {\n  const m = text.match(/\\*\\*Name:\\*\\*[ \\t]*([^\\n(.,;—–]+)/)\n  const name = m?.[1]?.replace(/[*_`]/g, \"\").trim()\n  return name && name.length <= 40 ? name : undefined\n}\n\nfunction readPersona(workspace: string | undefined): string | undefined {\n  if (!workspace) return undefined\n  for (const f of PERSONA_FILES) {\n    const file = resolve(workspace, f)\n    try {\n      if (existsSync(file)) {\n        const name = personaName(readFileSync(file, \"utf-8\"))\n        if (name) return name\n      }\n    } catch {\n      // An unreadable workspace file just means no persona name.\n    }\n  }\n  return undefined\n}\n\nlet cached: { file: string; mtimeMs: number; agents: RosterAgent[] } | null = null\n\n/** Agents configured in the `agentx.json` next to the wiki (`<root>/.agentx/wiki`). */\nexport function configuredAgents(wikiDir: string): RosterAgent[] {\n  const file = resolve(wikiDir, \"..\", \"..\", \"agentx.json\")\n  let mtimeMs: number\n  try { mtimeMs = statSync(file).mtimeMs } catch { return [] }\n  if (cached && cached.file === file && cached.mtimeMs === mtimeMs) return cached.agents\n  let agents: RosterAgent[] = []\n  try {\n    const raw = JSON.parse(readFileSync(file, \"utf-8\")) as { agents?: Record<string, { name?: unknown; workspace?: unknown }> }\n    agents = Object.entries(raw.agents ?? {}).map(([id, a]) => ({\n      id,\n      name: typeof a?.name === \"string\" ? a.name : undefined,\n      persona: readPersona(typeof a?.workspace === \"string\" ? a.workspace : undefined),\n    }))\n  } catch {\n    agents = [] // a config being rewritten; the next request reads it again\n  }\n  cached = { file, mtimeMs, agents }\n  return agents\n}\n\n/** Roster for a wiki: its agent folders, the node's config, and `agent_names`. */\nexport function loadRoster(wikiDir: string, agentIds: string[], extraNames: string[] = []): AgentRoster {\n  const configured = configuredAgents(wikiDir)\n  const known = new Set(configured.map(a => a.id))\n  return buildRoster([...configured, ...agentIds.filter(id => !known.has(id)).map(id => ({ id }))], extraNames)\n}\n","// --- Give a wiki page its ontology type (#811) ---\n\nimport type { WikiArticleMeta } from \"../types\"\nimport type { Ontology } from \"./types\"\n\nconst patternCache = new Map<string, RegExp | null>()\n\nfunction titlePattern(src: string): RegExp | null {\n  if (!patternCache.has(src)) {\n    try {\n      patternCache.set(src, new RegExp(src, \"i\"))\n    } catch {\n      patternCache.set(src, null) // reported by checkOntology; the rule never matches\n    }\n  }\n  return patternCache.get(src) ?? null\n}\n\n/**\n * The page's own `class` when the ontology knows it, else the first\n * classify rule whose every condition matches, else the fallback type.\n * `path` is relative to the agent's wiki, e.g. `clients/example.md`.\n */\nexport function classifyPage(meta: WikiArticleMeta, path: string, o: Ontology): string {\n  const known = new Set(o.types.map(t => t.id))\n  if (meta.class && known.has(meta.class)) return meta.class\n\n  const folders = path.split(\"/\").slice(0, -1).map(f => f.toLowerCase())\n  const tags = new Set((meta.tags ?? []).map(t => t.toLowerCase()))\n  for (const rule of o.classify) {\n    if (!known.has(rule.type)) continue\n    let conditions = 0\n    if (rule.legacy) {\n      conditions++\n      if (!meta.type || !rule.legacy.includes(meta.type)) continue\n    }\n    if (rule.path) {\n      conditions++\n      if (!rule.path.some(p => folders.includes(p.toLowerCase()))) continue\n    }\n    if (rule.tags) {\n      conditions++\n      if (!rule.tags.some(t => tags.has(t.toLowerCase()))) continue\n    }\n    if (rule.title) {\n      conditions++\n      const re = titlePattern(rule.title)\n      if (!re || !re.test(meta.title)) continue\n    }\n    if (conditions > 0) return rule.type\n  }\n  return known.has(o.fallback_type) ? o.fallback_type : o.types[0].id\n}\n","// --- One entity per real thing, across every agent's wiki (#811) ---\n//\n// Agents each keep their own pages, so the same person or server can\n// have several. The graph merges pages that share a name (title or\n// alias) into one entity, gives it a type from the ontology, and turns\n// statements and plain links into edges both ways. It is rebuilt only\n// when a page or the ontology changed.\n\nimport type { WikiArticle } from \"../types\"\nimport type { WikiHub } from \"../hub\"\nimport { classifyPage } from \"./classify\"\nimport { rosterMatch, type AgentRoster } from \"./roster\"\nimport type { Importance, Ontology, WikiStatement } from \"./types\"\n\nexport interface GraphPage {\n  agentId: string\n  article: WikiArticle\n}\n\nexport interface EntityStatement extends WikiStatement {\n  /** Entity id of the value when it names a page. */\n  target?: string\n  page: GraphPage\n}\n\nexport interface Entity {\n  id: string\n  type: string\n  pillar: string\n  title: string\n  pages: GraphPage[]\n  statements: EntityStatement[]\n  /** YYYY-MM-DD: the event date, else the first page's creation date. */\n  date: string\n  updated: string\n  importance: Importance\n  rolledUpInto?: string\n  /** Raw entry ids the pages were written from. */\n  sources: string[]\n  /** Why the type needs a person to check it (#819). */\n  review?: string\n}\n\nexport interface Edge {\n  from: string\n  to: string\n  property: string\n  statement?: EntityStatement\n}\n\nexport interface WikiGraph {\n  ontology: Ontology\n  entities: Map<string, Entity>\n  outgoing: Map<string, Edge[]>\n  incoming: Map<string, Edge[]>\n  /** Normalised name or path → entity id, for links. */\n  names: Map<string, string>\n}\n\nexport function normName(s: string): string {\n  return s.normalize(\"NFKD\").replace(/[̀-ͯ]/g, \"\").toLowerCase().replace(/\\.md$/, \"\").replace(/[^\\p{L}\\p{N}]+/gu, \" \").trim()\n}\n\nexport function slugify(s: string): string {\n  return normName(s).replace(/ /g, \"-\").slice(0, 80) || \"page\"\n}\n\nconst WIKILINK = /\\[\\[([^\\]|#]+)(?:[|#][^\\]]*)?\\]\\]/g\n\nfunction eventDate(a: WikiArticle): string {\n  if (a.meta.date) return a.meta.date\n  const base = a.path.split(\"/\").pop() ?? \"\"\n  const fromPath = base.match(/^(\\d{4}-\\d{2}-\\d{2})/)\n  if (fromPath) return fromPath[1]\n  const fromTitle = a.meta.title.match(/(\\d{4}-\\d{2}-\\d{2})/)\n  if (fromTitle) return fromTitle[1]\n  return (a.meta.created || a.meta.lastUpdated || \"\").slice(0, 10)\n}\n\n/**\n * Pages named after one of the fleet's agents are agents, not people\n * (#819). A page's own `class` still wins. When the name is also the\n * first name of a person page (\"Sam\" next to \"Sam Lee\"), the page keeps\n * its type and is flagged instead of guessed.\n */\nfunction applyRoster(entities: Map<string, Entity>, roster: AgentRoster, o: Ontology): void {\n  if (roster.size === 0 || !o.types.some(t => t.id === \"agent\")) return\n  const agentPillar = o.types.find(t => t.id === \"agent\")!.pillar\n  const firstNames = new Set<string>()\n  for (const e of entities.values()) {\n    const words = normName(e.title).split(\" \")\n    if (e.type === \"person\" && words.length > 1) firstNames.add(words[0])\n  }\n  for (const e of entities.values()) {\n    // Only people and untyped pages: a project or client can share an agent's name.\n    if ((e.type !== \"person\" && e.type !== o.fallback_type) || e.pages.some(p => p.article.meta.class)) continue\n    const agent = rosterMatch(roster, [e.title])\n    if (!agent) {\n      // An alias is weaker evidence: a person can have a nickname that is\n      // also an agent's name. Flag it, never retype it.\n      const byAlias = rosterMatch(roster, e.pages.flatMap(p => p.article.meta.aliases ?? []))\n      if (byAlias) e.review ??= `an alias matches agent ${byAlias}; set class on the page to decide`\n      continue\n    }\n    if (e.type === \"person\" && firstNames.has(normName(e.title))) {\n      e.review = `shares a name with agent ${agent} and with a person; set class on the page to decide`\n      continue\n    }\n    e.type = \"agent\"\n    e.pillar = agentPillar\n  }\n}\n\n/** Build the graph from pages. Pure: tests call it directly. */\nexport function buildGraph(pages: GraphPage[], o: Ontology, roster: AgentRoster = new Map()): WikiGraph {\n  const typeDef = new Map(o.types.map(t => [t.id, t]))\n  const names = new Map<string, string>()\n  const groups = new Map<string, GraphPage[]>()\n  const usedIds = new Set<string>()\n\n  for (const page of pages) {\n    const keys = [page.article.meta.title, ...(page.article.meta.aliases ?? [])].map(normName).filter(Boolean)\n    if (keys.length === 0) continue\n    let id = keys.map(k => names.get(k)).find(Boolean)\n    if (!id) {\n      id = slugify(page.article.meta.title)\n      for (let n = 2; usedIds.has(id); n++) id = `${slugify(page.article.meta.title)}-${n}`\n      usedIds.add(id)\n      groups.set(id, [])\n    }\n    groups.get(id)!.push(page)\n    for (const k of keys) if (!names.has(k)) names.set(k, id)\n    const pathKey = normName(page.article.path)\n    if (!names.has(pathKey)) names.set(pathKey, id)\n  }\n\n  const entities = new Map<string, Entity>()\n  for (const [id, group] of groups) {\n    const votes = new Map<string, number>()\n    for (const p of group) {\n      const t = classifyPage(p.article.meta, p.article.path, o)\n      // An explicit class outvotes any number of inferred ones.\n      const weight = p.article.meta.class === t ? 1000 : t === o.fallback_type ? 0.5 : 1\n      votes.set(t, (votes.get(t) ?? 0) + weight)\n    }\n    const type = [...votes.entries()].sort((a, b) => b[1] - a[1])[0][0]\n    const first = group[0].article\n    const dated = group.map(p => eventDate(p.article)).filter(Boolean).sort()\n    const importance = group.map(p => p.article.meta.importance).find(Boolean) ?? o.importance.default\n    entities.set(id, {\n      id,\n      type,\n      pillar: typeDef.get(type)?.pillar ?? \"topics\",\n      title: first.meta.title,\n      pages: group,\n      statements: [],\n      date: dated[0] ?? \"\",\n      updated: group.map(p => p.article.meta.lastUpdated || \"\").sort().pop() ?? \"\",\n      importance: group.some(p => p.article.meta.importance === \"major\") ? \"major\" : importance,\n      rolledUpInto: group.map(p => p.article.meta.rolledUpInto).find(Boolean),\n      sources: [...new Set(group.flatMap(p => p.article.meta.sources ?? []))],\n    })\n  }\n  applyRoster(entities, roster, o)\n\n  const resolveName = (s: string): string | undefined => names.get(normName(s))\n  const outgoing = new Map<string, Edge[]>()\n  const incoming = new Map<string, Edge[]>()\n  const addEdge = (e: Edge): void => {\n    if (e.from === e.to) return\n    const out = outgoing.get(e.from) ?? []\n    if (e.property === \"related\" && out.some(x => x.to === e.to)) return\n    out.push(e)\n    outgoing.set(e.from, out)\n    const inc = incoming.get(e.to) ?? []\n    inc.push(e)\n    incoming.set(e.to, inc)\n  }\n\n  for (const entity of entities.values()) {\n    for (const page of entity.pages) {\n      for (const s of page.article.meta.statements ?? []) {\n        const st: EntityStatement = { ...s, page, target: resolveName(s.value) }\n        entity.statements.push(st)\n        if (st.target) addEdge({ from: entity.id, to: st.target, property: s.property, statement: st })\n      }\n    }\n  }\n  // Plain links after typed ones, so a typed edge wins over \"related\".\n  for (const entity of entities.values()) {\n    for (const page of entity.pages) {\n      const linked = new Set(page.article.meta.related ?? [])\n      for (const m of page.article.content.matchAll(WIKILINK)) linked.add(m[1].trim())\n      for (const name of linked) {\n        const to = resolveName(name)\n        if (to) addEdge({ from: entity.id, to, property: \"related\" })\n      }\n    }\n  }\n  for (const e of entities.values()) {\n    if (e.rolledUpInto) e.rolledUpInto = resolveName(e.rolledUpInto)\n  }\n  return { ontology: o, entities, outgoing, incoming, names }\n}\n\n/** Builds from a hub, reusing the last graph while no page changed. */\nexport class GraphCache {\n  private last: { refs: WikiArticle[]; ontology: Ontology; roster: string; graph: WikiGraph } | null = null\n\n  get(hub: WikiHub, o: Ontology, roster: AgentRoster = new Map()): WikiGraph {\n    const pages: GraphPage[] = []\n    for (const agentId of hub.listAgents([])) {\n      for (const article of hub.getAgentWiki(agentId).listAllArticles()) pages.push({ agentId, article })\n    }\n    // The store hands back the same objects while files are unchanged.\n    const refs = pages.map(p => p.article)\n    const rosterKey = [...roster].join(\"\\n\")\n    const last = this.last\n    if (last && last.ontology === o && last.roster === rosterKey && last.refs.length === refs.length && last.refs.every((r, i) => r === refs[i])) {\n      return last.graph\n    }\n    const graph = buildGraph(pages, o, roster)\n    this.last = { refs, ontology: o, roster: rosterKey, graph }\n    return graph\n  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