agenticros 0.1.6 → 0.1.8

package/dist/commands/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAaH,MAAM,WAAW,WAAW;IAC1B,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,wBAAsB,WAAW,CAAC,IAAI,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,CAgKlE"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAcH,MAAM,WAAW,WAAW;IAC1B,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,wBAAsB,WAAW,CAAC,IAAI,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,CAqKlE"}

package/dist/commands/init.js

@@ -13,7 +13,7 @@
  *
  * Reuses the existing shell scripts as subprocesses (no logic duplication).
  */
-import { existsSync, mkdirSync, writeFileSync } from "node:fs";
+import { existsSync, mkdirSync, statSync, writeFileSync } from "node:fs";
 import { dirname, join } from "node:path";
 import { confirm, input, password, select } from "@inquirer/prompts";
 import { execa } from "execa";
@@ -21,6 +21,7 @@ import { runDoctorChecks } from "./doctor.js";
 import { getCliPaths, resetPathsCache } from "../util/paths.js";
 import { header, info, ok, warn, err, dim, withSpinner } from "../util/logger.js";
 import { writeState } from "../util/state.js";
+import { isWorkspaceBuilt, isWorkspaceInstalled } from "../util/workspace.js";
 export async function initCommand(opts) {
     header("AgenticROS first-time setup");
     let paths = getCliPaths();
@@ -76,8 +77,11 @@ export async function initCommand(opts) {
         writeInitNpmrcInline(repoRoot);
     }
     const before = await runDoctorChecks();
-    // Step: workspace deps.
-    if (opts.force || !nodeModulesPresent(repoRoot)) {
+    // Step: workspace deps. We check for `.modules.yaml` (not just node_modules/)
+    // so a partial / aborted previous install still triggers a fresh `pnpm
+    // install`. Otherwise users got stuck in "node_modules exists but tsc isn't
+    // in .bin" purgatory.
+    if (opts.force || !isWorkspaceInstalled(repoRoot)) {
         await runStep("Installing JS workspace dependencies (pnpm install)", async () => {
             // Explicitly pass the flags here in addition to writing them to .npmrc.
             // Reason: in some environments (containers, ephemeral CI, certain pnpm
@@ -103,10 +107,12 @@ export async function initCommand(opts) {
     else {
         ok("JS workspace deps already installed (skip).");
     }
-    // Step: build TS workspace.
-    if (opts.force || !mcpDistExists()) {
+    // Step: build TS workspace. Check core/dist (not just MCP dist) - the MCP
+    // dist is pre-built in the bundle but core/ros-camera need to be built so
+    // claude-code's downstream consumers (and start_demo.sh) can find them.
+    if (opts.force || !isWorkspaceBuilt(repoRoot)) {
         await runStep("Building TypeScript workspace (pnpm build)", async () => {
-            await execa("pnpm", ["build"], { cwd: repoRoot, stdio: "inherit" });
+            await execa("pnpm", ["-r", "build"], { cwd: repoRoot, stdio: "inherit" });
         });
     }
     else {
@@ -185,12 +191,6 @@ async function runStep(label, body) {
 async function runShell(cmd) {
     await execa("bash", ["-lc", cmd], { stdio: "inherit" });
 }
-function nodeModulesPresent(repoRoot) {
-    return existsSync(join(repoRoot, "node_modules"));
-}
-function mcpDistExists() {
-    return existsSync(getCliPaths().mcpDistDir);
-}
 function colconBuilt(ws) {
     return existsSync(join(ws, "install", "setup.bash"));
 }
@@ -343,14 +343,16 @@ function writeInitNpmrcInline(installDir) {
 /**
  * Refresh paths in ALWAYS_REFRESH_FROM_BUNDLE from the bundled runtime/.
  *
- * This is destructive *within* the listed paths: e.g. an existing
- * ~/agenticros/scripts/start_demo.sh will be overwritten by the new bundle's
- * version. Paths NOT on the list (config/, node_modules/, ros2_ws/build/,
- * the user's own files, etc.) are untouched.
+ * Overlay copy semantics:
+ *   * Files present in both bundle and install -> OVERWRITTEN with bundle version
+ *   * Files in install but NOT in bundle -> PRESERVED (so pnpm's per-package
+ *     node_modules symlinks inside packages/<pkg>/ survive a refresh)
+ *   * Files in bundle but NOT in install -> ADDED
  *
- * Uses `cp -a` per path so symlinks, perms, and mtimes are preserved. Each
- * destination is wiped first to handle "file removed from the new bundle"
- * cleanly (e.g. an obsolete script being deleted).
+ * Uses `cp -a SRC/. DST/` per path so symlinks, perms, and mtimes are
+ * preserved. We deliberately do NOT `rm -rf` the destination first: doing so
+ * destroys pnpm's per-package node_modules/.bin symlinks and breaks subsequent
+ * builds even though root node_modules looks healthy.
  */
 async function refreshShippedCode(installDir) {
     const paths = getCliPaths();
@@ -364,14 +366,23 @@ async function refreshShippedCode(installDir) {
         for (const rel of targets) {
             const src = join(source, rel);
             const dst = join(installDir, rel);
-            // Wipe the destination first so removed files in the new bundle don't
-            // linger. We're only ever inside ALWAYS_REFRESH_FROM_BUNDLE paths, which
-            // never contain user data.
-            if (existsSync(dst)) {
-                await execa("rm", ["-rf", dst]);
-            }
             mkdirSync(dirname(dst), { recursive: true });
-            await execa("cp", ["-a", src, dst]);
+            const srcIsDir = statSync(src).isDirectory();
+            if (srcIsDir && existsSync(dst)) {
+                // Directory overlay: copy contents of SRC into DST, overwriting same-
+                // named files but leaving everything else alone (preserves pnpm's
+                // per-package node_modules symlinks).
+                await execa("cp", ["-a", `${src}/.`, `${dst}/`]);
+            }
+            else {
+                // File, OR directory that doesn't exist at dest yet: plain `cp -a`.
+                // Strip a stale dst first only when it's a non-dir leaf file we
+                // need to overwrite (e.g. tsconfig.base.json).
+                if (existsSync(dst) && !srcIsDir) {
+                    await execa("rm", ["-f", dst]);
+                }
+                await execa("cp", ["-a", src, dst]);
+            }
         }
     });
 }

package/dist/commands/init.js.map

@@ -1 +1 @@
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package/dist/runners/real-robot.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"real-robot.d.ts","sourceRoot":"","sources":["../../src/runners/real-robot.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAYH,MAAM,WAAW,gBAAgB;IAC/B,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,wBAAsB,YAAY,CAAC,IAAI,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CA0CxE"}

package/dist/runners/real-robot.js

@@ -11,7 +11,8 @@ import { join } from "node:path";
 import { execa } from "execa";
 import { getCliPaths } from "../util/paths.js";
 import { detectRosDistro } from "../util/env.js";
-import { err, header, info, warn } from "../util/logger.js";
+import { err, header, info } from "../util/logger.js";
+import { ensureWorkspaceReady } from "../util/workspace.js";
 export async function runRealRobot(opts) {
     header("AgenticROS - real robot");
     const paths = getCliPaths();
@@ -21,26 +22,13 @@ export async function runRealRobot(opts) {
         err("Run `agenticros init` first; if you're using `npx`, this is a CLI bug — file an issue.");
         process.exit(1);
     }
-    // Precondition check: workspace must be installed + built. start_demo.sh
-    // now does this itself, but giving a clearer error here (before any RealSense
-    // launches) saves the user from a 200-line tsc dump.
-    const repoRoot = paths.repoRoot;
-    if (repoRoot) {
-        const nodeModules = join(repoRoot, "node_modules");
-        if (!existsSync(nodeModules)) {
-            err("JS workspace deps not installed. Run `agenticros init` first.");
-            process.exit(1);
-        }
-        // We only ship one prebuilt dist (claude-code). Core/ros-camera get built
-        // by `pnpm install`'s lifecycle or by `agenticros init`. If their dist is
-        // missing, start_demo.sh's `pnpm --filter ...@agenticros/claude-code build`
-        // will build them; warn the user so they don't think the CLI is stuck.
-        const coreDist = join(repoRoot, "packages", "core", "dist", "index.js");
-        if (!existsSync(coreDist)) {
-            warn("@agenticros/core dist/ missing — start_demo.sh will rebuild the\n" +
-                "  workspace before launching the MCP server (~30-90s on Jetson).\n" +
-                "  Tip: run `agenticros init` once after install to do this up front.");
-        }
+    // Auto-recover if the workspace isn't installed/built. start_demo.sh would
+    // also try to build, but it doesn't run `pnpm install` first - so a partial
+    // ~/agenticros (node_modules dir exists but no .pnpm, .bin missing) breaks
+    // it. Doing it here means picking "Launch with real robot" on a fresh
+    // install just works without the user having to know about `init` first.
+    if (paths.repoRoot) {
+        await ensureWorkspaceReady(paths.repoRoot, "the real-robot demo");
     }
     const ros = detectRosDistro(opts.rosDistro);
     if (!ros.distro) {

package/dist/runners/real-robot.js.map

@@ -1 +1 @@
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+{"version":3,"file":"real-robot.js","sourceRoot":"","sources":["../../src/runners/real-robot.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,EAAE,KAAK,EAAE,MAAM,OAAO,CAAC;AAE9B,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAC/C,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AACjD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACtD,OAAO,EAAE,oBAAoB,EAAE,MAAM,sBAAsB,CAAC;AAQ5D,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,IAAsB;IACvD,MAAM,CAAC,yBAAyB,CAAC,CAAC;IAElC,MAAM,KAAK,GAAG,WAAW,EAAE,CAAC;IAC5B,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,EAAE,eAAe,CAAC,CAAC;IACvD,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;QACxB,GAAG,CAAC,8BAA8B,MAAM,GAAG,CAAC,CAAC;QAC7C,GAAG,CACD,wFAAwF,CACzF,CAAC;QACF,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,2EAA2E;IAC3E,4EAA4E;IAC5E,2EAA2E;IAC3E,sEAAsE;IACtE,yEAAyE;IACzE,IAAI,KAAK,CAAC,QAAQ,EAAE,CAAC;QACnB,MAAM,oBAAoB,CAAC,KAAK,CAAC,QAAQ,EAAE,qBAAqB,CAAC,CAAC;IACpE,CAAC;IAED,MAAM,GAAG,GAAG,eAAe,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;IAC5C,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAChB,GAAG,CAAC,sFAAsF,CAAC,CAAC;QAC5F,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,GAAG,GAAG,EAAE,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAC/B,IAAI,IAAI,CAAC,MAAM,KAAK,KAAK;QAAE,GAAG,CAAC,sBAAsB,CAAC,GAAG,GAAG,CAAC;IAC7D,IAAI,IAAI,CAAC,MAAM,KAAK,KAAK;QAAE,GAAG,CAAC,sBAAsB,CAAC,GAAG,GAAG,CAAC;IAE7D,IAAI,CAAC,qBAAqB,GAAG,CAAC,MAAM,yCAAyC,CAAC,CAAC;IAC/E,IAAI,CAAC;QACH,MAAM,KAAK,CAAC,MAAM,EAAE,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE;YACxC,GAAG;YACH,KAAK,EAAE,SAAS;SACjB,CAAC,CAAC;IACL,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,GAAG,CAAC,yBAAyB,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QAC3E,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;AACH,CAAC"}

package/dist/util/workspace.d.ts

@@ -0,0 +1,38 @@
+/**
+ * Workspace bring-up helpers used by `agenticros init` and any runner that
+ * needs the JS workspace built before it can launch (currently `up real`;
+ * sim runners don't need TS deps).
+ *
+ * Why shared: across 0.1.2 .. 0.1.6 we kept hitting "user picks Launch
+ * without running init first" failures. Rather than asking the user to
+ * pick the right menu item, we just auto-recover.
+ */
+/**
+ * `node_modules/` alone isn't proof that `pnpm install` completed - pnpm
+ * creates the dir before it succeeds, and a half-finished install leaves it
+ * empty or missing `.pnpm/` / `.bin/`. Checking for `.modules.yaml` (written
+ * at the END of a successful install) is a reliable success marker.
+ *
+ * We ALSO verify that per-package symlinks exist - specifically the
+ * agenticros-claude-code package's tsc binary. The CLI's heal flow can
+ * accidentally clobber per-package node_modules even when root looks
+ * healthy, which manifests as `sh: tsc: not found` later. Treating that
+ * case as "not installed" forces a clean pnpm install on next launch.
+ */
+export declare function isWorkspaceInstalled(repoRoot: string): boolean;
+/**
+ * `pnpm build` succeeded if @agenticros/core has been emitted. The
+ * agenticros-claude-code adapter is pre-built in the published bundle so
+ * we don't check that one.
+ */
+export declare function isWorkspaceBuilt(repoRoot: string): boolean;
+/**
+ * Idempotently make sure the workspace is install + build ready. Anything
+ * already in place is left untouched.
+ *
+ * @param repoRoot  Path to the install or workspace root.
+ * @param what      Short label describing what needs the workspace (used in
+ *                  the user-facing notice).
+ */
+export declare function ensureWorkspaceReady(repoRoot: string, what: string): Promise<void>;
+//# sourceMappingURL=workspace.d.ts.map

package/dist/util/workspace.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"workspace.d.ts","sourceRoot":"","sources":["../../src/util/workspace.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AASH;;;;;;;;;;;GAWG;AACH,wBAAgB,oBAAoB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAkB9D;AAED;;;;GAIG;AACH,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAE1D;AA8CD;;;;;;;GAOG;AACH,wBAAsB,oBAAoB,CACxC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,GACX,OAAO,CAAC,IAAI,CAAC,CA+Bf"}

package/dist/util/workspace.js

@@ -0,0 +1,122 @@
+/**
+ * Workspace bring-up helpers used by `agenticros init` and any runner that
+ * needs the JS workspace built before it can launch (currently `up real`;
+ * sim runners don't need TS deps).
+ *
+ * Why shared: across 0.1.2 .. 0.1.6 we kept hitting "user picks Launch
+ * without running init first" failures. Rather than asking the user to
+ * pick the right menu item, we just auto-recover.
+ */
+import { existsSync, writeFileSync } from "node:fs";
+import { join } from "node:path";
+import { execa } from "execa";
+import { info, ok, warn, withSpinner } from "./logger.js";
+/**
+ * `node_modules/` alone isn't proof that `pnpm install` completed - pnpm
+ * creates the dir before it succeeds, and a half-finished install leaves it
+ * empty or missing `.pnpm/` / `.bin/`. Checking for `.modules.yaml` (written
+ * at the END of a successful install) is a reliable success marker.
+ *
+ * We ALSO verify that per-package symlinks exist - specifically the
+ * agenticros-claude-code package's tsc binary. The CLI's heal flow can
+ * accidentally clobber per-package node_modules even when root looks
+ * healthy, which manifests as `sh: tsc: not found` later. Treating that
+ * case as "not installed" forces a clean pnpm install on next launch.
+ */
+export function isWorkspaceInstalled(repoRoot) {
+    const nm = join(repoRoot, "node_modules");
+    if (!existsSync(nm))
+        return false;
+    if (!existsSync(join(nm, ".modules.yaml")))
+        return false;
+    if (!existsSync(join(nm, ".pnpm")))
+        return false;
+    // Verify a per-package symlink. `tsc` is in claude-code's devDeps and
+    // gets symlinked into node_modules/.bin per workspace package; if it's
+    // gone, downstream `pnpm build` will fail with `tsc: not found`.
+    const tsc = join(repoRoot, "packages", "agenticros-claude-code", "node_modules", ".bin", "tsc");
+    if (!existsSync(tsc))
+        return false;
+    return true;
+}
+/**
+ * `pnpm build` succeeded if @agenticros/core has been emitted. The
+ * agenticros-claude-code adapter is pre-built in the published bundle so
+ * we don't check that one.
+ */
+export function isWorkspaceBuilt(repoRoot) {
+    return existsSync(join(repoRoot, "packages", "core", "dist", "index.js"));
+}
+/** Write the same .npmrc init.ts writes inline (so pnpm install doesn't bail). */
+function writeInstallNpmrc(repoRoot) {
+    writeFileSync(join(repoRoot, ".npmrc"), [
+        "# Auto-written by AgenticROS CLI - keeps pnpm install from failing on",
+        "# upstream peer-dep mismatches (mem0ai @ qdrant/pg/redis).",
+        "shamefully-hoist=false",
+        "strict-peer-dependencies=false",
+        "auto-install-peers=true",
+        "",
+    ].join("\n"));
+}
+/**
+ * Run `pnpm install` with the same flags init.ts uses.
+ */
+async function runPnpmInstall(repoRoot) {
+    writeInstallNpmrc(repoRoot);
+    await execa("pnpm", [
+        "install",
+        "--no-strict-peer-dependencies",
+        "--config.auto-install-peers=true",
+    ], {
+        cwd: repoRoot,
+        stdio: "inherit",
+        env: {
+            ...process.env,
+            npm_config_strict_peer_dependencies: "false",
+            npm_config_auto_install_peers: "true",
+        },
+    });
+}
+/** Run `pnpm -r build` in repoRoot. */
+async function runPnpmBuild(repoRoot) {
+    await execa("pnpm", ["-r", "build"], { cwd: repoRoot, stdio: "inherit" });
+}
+/**
+ * Idempotently make sure the workspace is install + build ready. Anything
+ * already in place is left untouched.
+ *
+ * @param repoRoot  Path to the install or workspace root.
+ * @param what      Short label describing what needs the workspace (used in
+ *                  the user-facing notice).
+ */
+export async function ensureWorkspaceReady(repoRoot, what) {
+    const installed = isWorkspaceInstalled(repoRoot);
+    const built = isWorkspaceBuilt(repoRoot);
+    if (installed && built)
+        return;
+    info(`Preparing workspace for ${what} (one-time setup):`);
+    if (!installed) {
+        warn("  ↳ pnpm install (~1-2 min on Jetson)");
+    }
+    if (!built) {
+        warn("  ↳ pnpm -r build (~30-90 s)");
+    }
+    if (!installed) {
+        await withSpinner("Installing JS workspace dependencies (pnpm install)", async () => {
+            await runPnpmInstall(repoRoot);
+        });
+    }
+    else {
+        ok("JS workspace deps already installed.");
+    }
+    if (!built) {
+        await withSpinner("Building TypeScript workspace (pnpm -r build)", async () => {
+            await runPnpmBuild(repoRoot);
+        });
+    }
+    else {
+        ok("TypeScript workspace already built.");
+    }
+    ok("Workspace is ready.");
+}
+//# sourceMappingURL=workspace.js.map

package/dist/util/workspace.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agenticros",
-  "version": "0.1.6",
+  "version": "0.1.8",
   "type": "module",
   "description": "AgenticROS - agentic AI for ROS-powered robots. Single CLI to launch real-robot or simulated demos, manage configuration, and inspect status.",
   "keywords": [
@@ -31,15 +31,6 @@
   "engines": {
     "node": ">=20.0.0"
   },
-  "scripts": {
-    "build": "tsc",
-    "typecheck": "tsc --noEmit",
-    "clean": "rm -rf dist runtime tsconfig.tsbuildinfo",
-    "pack:runtime": "node ../../scripts/pack-runtime.mjs",
-    "size:check": "node ../../scripts/check-cli-tarball-size.mjs",
-    "tarball:check": "node ../../scripts/check-cli-tarball-install.mjs",
-    "prepublishOnly": "pnpm run clean && pnpm run build && pnpm run pack:runtime && pnpm run size:check && pnpm run tarball:check"
-  },
   "dependencies": {
     "@inquirer/prompts": "^7.0.0",
     "commander": "^12.1.0",
@@ -58,5 +49,13 @@
     "type": "git",
     "url": "git+https://github.com/PlaiPin/agenticros.git",
     "directory": "packages/agenticros-cli"
+  },
+  "scripts": {
+    "build": "tsc",
+    "typecheck": "tsc --noEmit",
+    "clean": "rm -rf dist runtime tsconfig.tsbuildinfo",
+    "pack:runtime": "node ../../scripts/pack-runtime.mjs",
+    "size:check": "node ../../scripts/check-cli-tarball-size.mjs",
+    "tarball:check": "node ../../scripts/check-cli-tarball-install.mjs"
   }
-}
+}

package/runtime/BUNDLE.json

@@ -1,5 +1,5 @@
 {
-  "packedAt": "2026-06-05T22:52:39.644Z",
+  "packedAt": "2026-06-05T23:06:49.989Z",
   "repo": "https://github.com/PlaiPin/agenticros",
   "note": "This directory is a snapshot of the agenticros monorepo source. `agenticros init` will copy it to ~/agenticros and run pnpm install + colcon build there.",
   "layout": {

package/runtime/scripts/check-cli-tarball-install.mjs

@@ -213,6 +213,55 @@ try {
   }
   ok(`Patched zenoh-ts present in store: ${patched.slice(0, 70)}...`);
 
+  // 8. Refresh-over-existing-install coverage. Mirrors what init.ts does in
+  // "installed mode" - overlay-copy bundle paths over an existing install
+  // without nuking pnpm's per-package symlinks. Regression test for 0.1.7:
+  // cp -a SRC/. DST/ blows up when DST is a file (e.g. tsconfig.base.json).
+  step("Simulating refresh over a pre-existing snapshot (regression test for 0.1.7)...");
+  const fakeOld = join(work, "old-install");
+  mkdirSync(fakeOld);
+  fs.writeFileSync(join(fakeOld, "tsconfig.base.json"), '{"old":"to-be-overwritten"}');
+  mkdirSync(join(fakeOld, "packages"), { recursive: true });
+  fs.writeFileSync(
+    join(fakeOld, "packages", "preserved.txt"),
+    "must survive overlay refresh",
+  );
+
+  // Replay the refresh logic from init.ts. If init.ts changes its branching,
+  // update this block in lockstep.
+  const refreshTargets = ["tsconfig.base.json", "packages"];
+  for (const rel of refreshTargets) {
+    const src = join(runtimeInTar, rel);
+    const dst = join(fakeOld, rel);
+    if (!existsSync(src)) continue;
+    const srcIsDir = fs.statSync(src).isDirectory();
+    if (srcIsDir && existsSync(dst)) {
+      run("cp", ["-a", `${src}/.`, `${dst}/`]);
+    } else {
+      if (existsSync(dst) && !srcIsDir) run("rm", ["-f", dst]);
+      run("cp", ["-a", src, dst]);
+    }
+  }
+
+  const tsStat = fs.statSync(join(fakeOld, "tsconfig.base.json"));
+  if (!tsStat.isFile()) {
+    fail("Refresh turned tsconfig.base.json into a non-file. cp branching is wrong.");
+    process.exit(1);
+  }
+  const tsContent = fs.readFileSync(join(fakeOld, "tsconfig.base.json"), "utf8");
+  if (tsContent.includes('"old":"to-be-overwritten"')) {
+    fail("Refresh failed to overwrite tsconfig.base.json with the bundle's version.");
+    process.exit(1);
+  }
+  if (!existsSync(join(fakeOld, "packages", "preserved.txt"))) {
+    fail(
+      "Refresh wiped a pre-existing file inside packages/. Overlay semantics " +
+        "are broken - this is exactly what kills pnpm's per-package node_modules symlinks.",
+    );
+    process.exit(1);
+  }
+  ok("Refresh-over-existing-install preserves files and overwrites cleanly.");
+
   ok("ALL CHECKS PASSED. Tarball is publish-ready.");
 } finally {
   // best-effort cleanup; don't mask earlier errors