agentic-qe 3.9.0 → 3.9.1

package/dist/cli/chunks/{chunk-YAGODYIG.js → chunk-7ZNINH6J.js}

@@ -1,5 +1,5 @@
-if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.9.0");process.exit(0)}
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"+s,s,r.code,r))}}invalidateCache(e){let t=this.resolvePath(e);this.cache.delete(t),this.updateCacheStats()}clearCache(){this.cache.clear(),this.updateCacheStats()}pruneCache(){let e=this.cache.prune();return this.updateCacheStats(),e}getStats(){return{...this.stats}}resetStats(){this.stats={cacheHits:0,cacheMisses:0,totalReads:0,cacheSize:this.cache.totalBytes,cacheEntries:this.cache.size}}updateCacheStats(){this.stats.cacheSize=this.cache.totalBytes,this.stats.cacheEntries=this.cache.size}};V();var v={MODEL:"all-MiniLM-L6-v2",DIMENSIONS:384,CONTEXT_WINDOW:8192,BATCH_SIZE:100,MAX_RETRIES:3,RETRY_DELAY_MS:1e3,TIMEOUT_MS:3e4,DEFAULT_OLLAMA_URL:"http://localhost:11434"};var K=class{baseUrl;maxRetries;retryDelayMs;timeoutMs;constructor(e=v.DEFAULT_OLLAMA_URL,t=v.MAX_RETRIES,s=v.RETRY_DELAY_MS,n=v.TIMEOUT_MS){this.baseUrl=e.replace(/\/$/,""),this.maxRetries=t,this.retryDelayMs=s,this.timeoutMs=n}async healthCheck(){try{let e=await this.fetchWithTimeout(`${this.baseUrl}/api/tags`,{method:"GET",headers:{"Content-Type":"application/json"}},5e3);if(!e.ok)return!1;let t=await e.json();return t.models?t.models.some(s=>s.name?.startsWith(v.MODEL)||s.model?.startsWith(v.MODEL)):!1}catch{return!1}}async generateEmbedding(e){let t={model:v.MODEL,prompt:e},s=null;for(let n=0;n<this.maxRetries;n++)try{let r=await this.fetchWithTimeout(`${this.baseUrl}/api/embeddings`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(t)},this.timeoutMs);if(!r.ok){let i=await r.text();throw new Error(`Ollama API error (${r.status}): ${i}`)}let o=await r.json();if(o.embedding.length!==v.DIMENSIONS)throw new Error(`Invalid embedding dimensions: expected ${v.DIMENSIONS}, got ${o.embedding.length}`);return o.embedding}catch(r){if(s=D(r),s.message.includes("Invalid embedding dimensions"))throw s;if(n<this.maxRetries-1){let o=this.retryDelayMs*Math.pow(2,n);await this.sleep(o)}}throw new Error(`Failed to generate embedding after ${this.maxRetries} attempts: ${s?.message}`)}async fetchWithTimeout(e,t,s){let n=new AbortController,r=setTimeout(()=>n.abort(),s);try{return await fetch(e,{...t,signal:n.signal})}finally{clearTimeout(r)}}sleep(e){return new Promise(t=>setTimeout(t,e))}async getServerInfo(){try{let e=await this.fetchWithTimeout(`${this.baseUrl}/api/tags`,{method:"GET",headers:{"Content-Type":"application/json"}},5e3);return e.ok?await e.json():null}catch{return null}}async ensureModelAvailable(){if(!await this.healthCheck())throw new Error(`Ollama model '${v.MODEL}' is not available. Please run: ollama pull ${v.MODEL}`)}};import{createHash as Pe}from"crypto";var U=class{cache;maxSize;hits;misses;constructor(e=1e4){this.cache=new Map,this.maxSize=e,this.hits=0,this.misses=0}hashContent(e,t){return Pe("sha256").update(`${t}:${e}`).digest("hex")}get(e,t){let s=this.hashContent(e,t),n=this.cache.get(s);return n?(this.hits++,this.cache.delete(s),this.cache.set(s,n),n.embedding):(this.misses++,null)}set(e,t,s){let n=this.hashContent(e,t);if(this.cache.size>=this.maxSize&&!this.cache.has(n)){let o=this.cache.keys().next().value;o&&this.cache.delete(o)}let r={embedding:s,timestamp:Date.now(),model:t};this.cache.set(n,r)}has(e,t){let s=this.hashContent(e,t);return this.cache.has(s)}getStats(){let e=this.hits+this.misses,t=e>0?this.hits/e:0;return{size:this.cache.size,hitRate:t,hits:this.hits,misses:this.misses}}clear(){this.cache.clear(),this.hits=0,this.misses=0}evictOlderThan(e){let s=Date.now()-e,n=0;for(let[r,o]of this.cache.entries())o.timestamp<s&&(this.cache.delete(r),n++);return n}getMemoryUsageEstimate(){return this.cache.size*3172}export(){return Array.from(this.cache.entries()).map(([e,t])=>({key:e,entry:t}))}import(e){this.cache.clear();for(let{key:t,entry:s}of e)this.cache.size<this.maxSize&&this.cache.set(t,s)}};V();var _=class{client;cache;batchSize;enableFallback;ollamaAvailable=null;constructor(e={}){this.client=new K(e.ollamaBaseUrl),this.cache=e.cache??new U(e.maxCacheSize),this.batchSize=e.batchSize??v.BATCH_SIZE,this.enableFallback=e.enableFallback??!0}async embed(e){let t=this.cache.get(e,v.MODEL);if(t)return t;let s;if(await this.isOllamaAvailable())s=await this.client.generateEmbedding(e);else if(this.enableFallback)s=this.generatePseudoEmbedding(e);else throw new Error(`Ollama is not available and fallback is disabled. Please run: ollama pull ${v.MODEL}`);return this.cache.set(e,v.MODEL,s),s}formatForEmbedding(e){let t=[];e.language&&t.push(e.language),e.type&&t.push(e.type),e.name&&t.push(e.name);let s=t.length>0?`${t.join(" ")}: `:"",n=v.CONTEXT_WINDOW*4,r=e.content.trim();if(s.length+r.length>n){let o=n-s.length-3;r=r.substring(0,o)+"..."}return s+r}async embedBatch(e){let t=[];for(let s of e){let n=await this.embed(s);t.push(n)}return t}async embedCodeChunks(e,t){let s=Date.now(),n=[],r=0,o=0,i=await this.isOllamaAvailable();if(i)await this.client.ensureModelAvailable();else if(!this.enableFallback)throw new Error(`Ollama is not available and fallback is disabled. Please run: ollama pull ${v.MODEL}`);for(let c=0;c<e.length;c+=this.batchSize){let l=e.slice(c,Math.min(c+this.batchSize,e.length)),d=await this.processBatch(l,i);n.push(...d);for(let u of d)u.cached?r++:o++;if(t){let u=c+l.length,m=e.length,f=(Date.now()-s)/u,y=(m-u)*f;t({current:u,total:m,percentage:u/m*100,estimatedTimeRemainingMs:y})}}let a=Date.now()-s;return{results:n,stats:{totalChunks:e.length,cachedHits:r,computedNew:o,totalTimeMs:a,avgTimePerChunk:a/e.length}}}async processBatch(e,t){let s=[],n=e.map(async o=>{let i=this.formatForEmbedding(o),a=Date.now(),c=this.cache.get(i,v.MODEL);if(c)return{chunkId:o.id,embedding:c,model:v.MODEL,cached:!0,computeTimeMs:Date.now()-a};try{let l;return t?l=await this.client.generateEmbedding(i):l=this.generatePseudoEmbedding(i),this.cache.set(i,v.MODEL,l),{chunkId:o.id,embedding:l,model:t?v.MODEL:"pseudo-embedding",cached:!1,computeTimeMs:Date.now()-a}}catch(l){throw new Error(`Failed to generate embedding for chunk ${o.id}: ${j(l)}`)}}),r=await Promise.all(n);return s.push(...r),s}async isOllamaAvailable(){return this.ollamaAvailable!==null?this.ollamaAvailable:(this.ollamaAvailable=await this.client.healthCheck(),this.ollamaAvailable)}resetOllamaCheck(){this.ollamaAvailable=null}generatePseudoEmbedding(e){let t=new Array(v.DIMENSIONS).fill(0),s=e.split(/\s+|[^\w]+/).filter(o=>o.length>0);for(let o=0;o<s.length;o++){let i=s[o];for(let a=0;a<i.length&&a<t.length;a++)t[(o+a)%t.length]+=i.charCodeAt(a)/1e3}let n=[[/class\s+\w+/,0],[/function\s+\w+/,1],[/async\s+|await\s+|Promise/,2],[/interface\s+\w+/,3],[/export\s+/,4],[/import\s+/,5],[/try\s*{/,6],[/\.(map|filter|reduce)\(/,7]];for(let[o,i]of n)o.test(e)&&(t[i]+=.5);let r=Math.sqrt(t.reduce((o,i)=>o+i*i,0))||1;return t.map(o=>o/r)}clearCache(){this.cache.clear()}getCacheStats(){return this.cache.getStats()}async healthCheck(){return await this.client.healthCheck()}async getServerInfo(){return await this.client.getServerInfo()}getDimensions(){return v.DIMENSIONS}getConfig(){return{model:v.MODEL,dimensions:v.DIMENSIONS,contextWindow:v.CONTEXT_WINDOW,batchSize:this.batchSize,maxRetries:v.MAX_RETRIES,enableFallback:this.enableFallback}}};V();le();var we={maxNodes:1e5,maxEdgesPerNode:500,namespace:"code-intelligence:kg",enableVectorEmbeddings:!0,embeddingDimension:384,enableLLMExtraction:!0,llmModelTier:2,llmMaxTokens:2048},me=oe.create("code-intelligence/knowledge-graph"),he=class{config;memory;nodeCache=new Map;edgeIndex=new Map;tsParser;fileReader;embedder;llmRouter;constructor(e,t={}){this.config={...we,...t},this.isKnowledgeGraphDependencies(e)?(this.memory=e.memory,this.llmRouter=e.llmRouter):(this.memory=e,this.llmRouter=void 0),this.tsParser=new F,this.fileReader=new k,this.embedder=new _({enableFallback:!0})}isKnowledgeGraphDependencies(e){return e.memory!==void 0}async index(e){let t=Date.now(),s=[],n=0,r=0;try{let{paths:o,incremental:i=!1,includeTests:a=!0,languages:c}=e;i||await this.clear();for(let d of o)try{if(c&&c.length>0){let m=this.getFileExtension(d);if(!this.matchesLanguage(m,c))continue}if(!a&&this.isTestFile(d))continue;let u=await this.indexFile(d);n+=u.nodes,r+=u.edges}catch(u){s.push({file:d,error:j(u)})}let l=Date.now()-t;return await this.storeIndexMetadata({filesIndexed:o.length-s.length,nodesCreated:n,edgesCreated:r,duration:l,indexedAt:new Date().toISOString()}),w({filesIndexed:o.length-s.length,nodesCreated:n,edgesCreated:r,duration:l,errors:s})}catch(o){return L(D(o))}}async query(e){try{let{query:t,type:s,limit:n=100}=e;return s==="cypher"?this.executeCypherQuery(t,n):this.executeNaturalLanguageQuery(t,n)}catch(t){return L(D(t))}}async mapDependencies(e){try{let{files:t,direction:s,depth:n=3}=e,r=[],o=[],i=new Set,a=[];for(let l of t)await this.traverseDependencies(l,s,n,i,r,o,[],a);let c=this.calculateDependencyMetrics(r,o);return w({nodes:r,edges:o,cycles:a,metrics:c})}catch(t){return L(D(t))}}async getNode(e){if(this.nodeCache.has(e))return this.nodeCache.get(e);let t=`${this.config.namespace}:node:${e}`,s=await this.memory.get(t);return s&&this.nodeCache.set(e,s),s}async getEdges(e,t){let s=[],n=this.edgeIndex.get(e);if(n)return this.filterEdgesByDirection(n,e,t);let r=`${this.config.namespace}:edge:*`,o=await this.memory.search(r,this.config.maxEdgesPerNode*2);for(let i of o){let a=await this.memory.get(i);a&&(t!=="outgoing"&&a.target===e||t!=="incoming"&&a.source===e)&&s.push(a)}return s}async clear(){this.nodeCache.clear(),this.edgeIndex.clear()}isLLMExtractionAvailable(){return this.config.enableLLMExtraction===!0&&this.llmRouter!==void 0}getModelForTier(e){switch(e){case 1:return"claude-3-5-haiku-20241022";case 2:return"claude-sonnet-4-20250514";case 3:return"claude-sonnet-4-20250514";case 4:return"claude-opus-4-5-20251101";default:return"claude-sonnet-4-20250514"}}async 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Extract:
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Set AQE_PARSER_REGEX_ONLY=0 or ensure web-tree-sitter is installed to enable WASM.");return}let t=e.createWasmParsers();for(let s of de){let n=t.get(s),r=this.parsers.get(s);n&&r&&this.parsers.set(s,new se(n,r))}$.info("tree-sitter WASM parsers available for: "+de.join(", "))}catch{$.info("tree-sitter WASM parser module not available. Using regex parsers for all languages.")}}register(e){this.parsers.set(e.language,e)}getParser(e){return this.parsers.get(e)}async parseFile(e,t,s){this._wasmInitPromise&&(await this._wasmInitPromise,this._wasmInitPromise=null);let n=this.parsers.get(s);if(n)return n.parseFile(e,t)}getSupportedLanguages(){return Array.from(this.parsers.keys())}supportsLanguage(e){return this.parsers.has(e)}},De=new ne;import*as M from"node:fs/promises";import*as C from"node:path";var xe=[/\.\./,/%2e%2e/i,/%252e%252e/i,/\.\.%2f/i,/%2f\.\./i,/\.\.%5c/i,/\.\.\\/,/%c0%ae/i,/%c0%2f/i,/%c1%9c/i,/\0/,/%00/i],ve=[/^\/etc\//i,/^\/proc\//i,/^\/sys\//i,/^\/dev\//i,/^\/root\//i,/^\/home\/.+\/\./i,/^[A-Z]:\\Windows/i,/^[A-Z]:\\System/i,/^[A-Z]:\\Users\\.+\\AppData/i],ie=class{name="path-traversal";getRiskLevel(){return"critical"}validate(e,t={}){let{basePath:s="",allowAbsolute:n=!1,allowedExtensions:r=[],deniedExtensions:o=[".exe",".bat",".cmd",".sh",".ps1",".dll",".so"],maxDepth:i=10,maxLength:a=4096}=t;if(e.length>a)return{valid:!1,error:`Path exceeds maximum length of ${a}`,riskLevel:"medium"};for(let g of xe)if(g.test(e))return{valid:!1,error:"Path traversal attempt detected",riskLevel:"critical"};if(!n&&(e.startsWith("/")||/^[A-Z]:/i.test(e)))return{valid:!1,error:"Absolute paths are not allowed",riskLevel:"high"};for(let g of ve)if(g.test(e))return{valid:!1,error:"Access to system paths is not allowed",riskLevel:"critical"};let c=this.normalizePath(e);if(c.includes(".."))return{valid:!1,error:"Path traversal detected after normalization",riskLevel:"critical"};if(c.split("/").filter(Boolean).length>i)return{valid:!1,error:`Path depth exceeds maximum of ${i}`,riskLevel:"low"};let d=this.getExtension(c);if(d){let g=`.${d.toLowerCase()}`,f=d.toLowerCase();if(o.length>0&&o.some(y=>y.toLowerCase()===g||y.toLowerCase()===f))return{valid:!1,error:`File extension '${d}' is not allowed`,riskLevel:"high"};if(r.length>0&&!r.some(y=>y.toLowerCase()===g||y.toLowerCase()===f))return{valid:!1,error:`File extension '${d}' is not in allowed list`,riskLevel:"medium"}}let u=s?this.joinPathsAbsolute(s,c):c,m=s.startsWith("/")?`/${this.normalizePath(s)}`:this.normalizePath(s);return s&&!u.startsWith(m)?{valid:!1,error:"Path escapes base directory",riskLevel:"critical"}:{valid:!0,normalizedPath:u,riskLevel:"none"}}normalizePath(e){let t=e.replace(/\\/g,"/");t=t.replace(/\/+/g,"/");let s=t.split("/"),n=[];for(let r of 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this.cache.forEach((n,r)=>{e-n.timestamp>this.ttlMs&&s.push(r)}),s.forEach(n=>{this.delete(n),t++}),t}};function Ie(h){let e="",t=0;for(;t<h.length;){let s=h[t],n=h[t+1];s==="*"&&n==="*"?h[t+2]==="/"?(e+="(?:.*/)?",t+=3):(e+=".*",t+=2):s==="*"?(e+="[^/]*",t++):s==="?"?(e+="[^/]",t++):".+^${}()|[]\\".includes(s)?(e+="\\"+s,t++):(e+=s,t++)}return new RegExp("^"+e+"$")}async function ue(h,e,t,s){try{let n=await M.readdir(h,{withFileTypes:!0});for(let r of n){let o=C.join(h,r.name),i=C.relative(s,o);if(r.isDirectory())r.name!=="node_modules"&&!r.name.startsWith(".")&&await ue(o,e,t,s);else if(r.isFile()){let a=i.replace(/\\/g,"/");e.test(a)&&t.push(o)}}}catch(n){console.debug("[FileReader] Directory read error:",n instanceof Error?n.message:n)}}var k=class{basePath;cache;enableCache;stats={cacheHits:0,cacheMisses:0,totalReads:0,cacheSize:0,cacheEntries:0};constructor(e={}){this.basePath=e.basePath??process.cwd(),this.enableCache=e.enableCache??!0,this.cache=new ae(e.maxCacheSize??100,e.cacheTtlMs??300*1e3)}resolvePath(e){let t=C.isAbsolute(e),s=pe(e,{basePath:t?"":this.basePath,allowAbsolute:!0,deniedExtensions:[".exe",".bat",".cmd",".ps1",".dll",".so"]});if(!s.valid)throw new T(e,[s.error||"Path validation failed"],s.riskLevel);if(t&&this.basePath){let n=C.resolve(this.basePath),r=C.resolve(e);if(!r.startsWith(n))throw new T(e,["Path escapes base directory"],"critical");return r}return s.normalizedPath?s.normalizedPath:t?e:C.resolve(this.basePath,e)}async readFile(e){let t;try{t=this.resolvePath(e)}catch(s){if(s instanceof T)return L(s);throw s}if(this.stats.totalReads++,this.enableCache){let s=this.cache.get(t);if(s!==void 0)return this.stats.cacheHits++,this.updateCacheStats(),w(s);this.stats.cacheMisses++}try{let s=await M.readFile(t,"utf-8");return this.enableCache&&(this.cache.set(t,s,Buffer.byteLength(s,"utf-8")),this.updateCacheStats()),w(s)}catch(s){let n=s,r;switch(n.code){case"ENOENT":r="File not found: 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"+s,s,r.code,r))}}invalidateCache(e){let t=this.resolvePath(e);this.cache.delete(t),this.updateCacheStats()}clearCache(){this.cache.clear(),this.updateCacheStats()}pruneCache(){let e=this.cache.prune();return this.updateCacheStats(),e}getStats(){return{...this.stats}}resetStats(){this.stats={cacheHits:0,cacheMisses:0,totalReads:0,cacheSize:this.cache.totalBytes,cacheEntries:this.cache.size}}updateCacheStats(){this.stats.cacheSize=this.cache.totalBytes,this.stats.cacheEntries=this.cache.size}};V();var v={MODEL:"all-MiniLM-L6-v2",DIMENSIONS:384,CONTEXT_WINDOW:8192,BATCH_SIZE:100,MAX_RETRIES:3,RETRY_DELAY_MS:1e3,TIMEOUT_MS:3e4,DEFAULT_OLLAMA_URL:"http://localhost:11434"};var K=class{baseUrl;maxRetries;retryDelayMs;timeoutMs;constructor(e=v.DEFAULT_OLLAMA_URL,t=v.MAX_RETRIES,s=v.RETRY_DELAY_MS,n=v.TIMEOUT_MS){this.baseUrl=e.replace(/\/$/,""),this.maxRetries=t,this.retryDelayMs=s,this.timeoutMs=n}async healthCheck(){try{let e=await this.fetchWithTimeout(`${this.baseUrl}/api/tags`,{method:"GET",headers:{"Content-Type":"application/json"}},5e3);if(!e.ok)return!1;let t=await e.json();return t.models?t.models.some(s=>s.name?.startsWith(v.MODEL)||s.model?.startsWith(v.MODEL)):!1}catch{return!1}}async generateEmbedding(e){let t={model:v.MODEL,prompt:e},s=null;for(let n=0;n<this.maxRetries;n++)try{let r=await this.fetchWithTimeout(`${this.baseUrl}/api/embeddings`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(t)},this.timeoutMs);if(!r.ok){let i=await r.text();throw new Error(`Ollama API error (${r.status}): ${i}`)}let o=await r.json();if(o.embedding.length!==v.DIMENSIONS)throw new Error(`Invalid embedding dimensions: expected ${v.DIMENSIONS}, got ${o.embedding.length}`);return o.embedding}catch(r){if(s=D(r),s.message.includes("Invalid embedding dimensions"))throw s;if(n<this.maxRetries-1){let o=this.retryDelayMs*Math.pow(2,n);await this.sleep(o)}}throw new Error(`Failed to generate embedding after ${this.maxRetries} attempts: ${s?.message}`)}async fetchWithTimeout(e,t,s){let n=new AbortController,r=setTimeout(()=>n.abort(),s);try{return await fetch(e,{...t,signal:n.signal})}finally{clearTimeout(r)}}sleep(e){return new Promise(t=>setTimeout(t,e))}async getServerInfo(){try{let e=await this.fetchWithTimeout(`${this.baseUrl}/api/tags`,{method:"GET",headers:{"Content-Type":"application/json"}},5e3);return e.ok?await e.json():null}catch{return null}}async ensureModelAvailable(){if(!await this.healthCheck())throw new Error(`Ollama model '${v.MODEL}' is not available. Please run: ollama pull ${v.MODEL}`)}};import{createHash as Pe}from"crypto";var U=class{cache;maxSize;hits;misses;constructor(e=1e4){this.cache=new Map,this.maxSize=e,this.hits=0,this.misses=0}hashContent(e,t){return Pe("sha256").update(`${t}:${e}`).digest("hex")}get(e,t){let s=this.hashContent(e,t),n=this.cache.get(s);return n?(this.hits++,this.cache.delete(s),this.cache.set(s,n),n.embedding):(this.misses++,null)}set(e,t,s){let n=this.hashContent(e,t);if(this.cache.size>=this.maxSize&&!this.cache.has(n)){let o=this.cache.keys().next().value;o&&this.cache.delete(o)}let r={embedding:s,timestamp:Date.now(),model:t};this.cache.set(n,r)}has(e,t){let s=this.hashContent(e,t);return this.cache.has(s)}getStats(){let e=this.hits+this.misses,t=e>0?this.hits/e:0;return{size:this.cache.size,hitRate:t,hits:this.hits,misses:this.misses}}clear(){this.cache.clear(),this.hits=0,this.misses=0}evictOlderThan(e){let s=Date.now()-e,n=0;for(let[r,o]of this.cache.entries())o.timestamp<s&&(this.cache.delete(r),n++);return n}getMemoryUsageEstimate(){return this.cache.size*3172}export(){return Array.from(this.cache.entries()).map(([e,t])=>({key:e,entry:t}))}import(e){this.cache.clear();for(let{key:t,entry:s}of e)this.cache.size<this.maxSize&&this.cache.set(t,s)}};V();var _=class{client;cache;batchSize;enableFallback;ollamaAvailable=null;constructor(e={}){this.client=new K(e.ollamaBaseUrl),this.cache=e.cache??new U(e.maxCacheSize),this.batchSize=e.batchSize??v.BATCH_SIZE,this.enableFallback=e.enableFallback??!0}async embed(e){let t=this.cache.get(e,v.MODEL);if(t)return t;let s;if(await this.isOllamaAvailable())s=await this.client.generateEmbedding(e);else if(this.enableFallback)s=this.generatePseudoEmbedding(e);else throw new Error(`Ollama is not available and fallback is disabled. Please run: ollama pull ${v.MODEL}`);return this.cache.set(e,v.MODEL,s),s}formatForEmbedding(e){let t=[];e.language&&t.push(e.language),e.type&&t.push(e.type),e.name&&t.push(e.name);let s=t.length>0?`${t.join(" ")}: `:"",n=v.CONTEXT_WINDOW*4,r=e.content.trim();if(s.length+r.length>n){let o=n-s.length-3;r=r.substring(0,o)+"..."}return s+r}async embedBatch(e){let t=[];for(let s of e){let n=await this.embed(s);t.push(n)}return t}async embedCodeChunks(e,t){let s=Date.now(),n=[],r=0,o=0,i=await this.isOllamaAvailable();if(i)await this.client.ensureModelAvailable();else if(!this.enableFallback)throw new Error(`Ollama is not available and fallback is disabled. Please run: ollama pull ${v.MODEL}`);for(let c=0;c<e.length;c+=this.batchSize){let l=e.slice(c,Math.min(c+this.batchSize,e.length)),d=await this.processBatch(l,i);n.push(...d);for(let u of d)u.cached?r++:o++;if(t){let u=c+l.length,m=e.length,f=(Date.now()-s)/u,y=(m-u)*f;t({current:u,total:m,percentage:u/m*100,estimatedTimeRemainingMs:y})}}let a=Date.now()-s;return{results:n,stats:{totalChunks:e.length,cachedHits:r,computedNew:o,totalTimeMs:a,avgTimePerChunk:a/e.length}}}async processBatch(e,t){let s=[],n=e.map(async o=>{let i=this.formatForEmbedding(o),a=Date.now(),c=this.cache.get(i,v.MODEL);if(c)return{chunkId:o.id,embedding:c,model:v.MODEL,cached:!0,computeTimeMs:Date.now()-a};try{let l;return t?l=await this.client.generateEmbedding(i):l=this.generatePseudoEmbedding(i),this.cache.set(i,v.MODEL,l),{chunkId:o.id,embedding:l,model:t?v.MODEL:"pseudo-embedding",cached:!1,computeTimeMs:Date.now()-a}}catch(l){throw new Error(`Failed to generate embedding for chunk ${o.id}: ${j(l)}`)}}),r=await Promise.all(n);return s.push(...r),s}async isOllamaAvailable(){return this.ollamaAvailable!==null?this.ollamaAvailable:(this.ollamaAvailable=await this.client.healthCheck(),this.ollamaAvailable)}resetOllamaCheck(){this.ollamaAvailable=null}generatePseudoEmbedding(e){let t=new Array(v.DIMENSIONS).fill(0),s=e.split(/\s+|[^\w]+/).filter(o=>o.length>0);for(let o=0;o<s.length;o++){let i=s[o];for(let a=0;a<i.length&&a<t.length;a++)t[(o+a)%t.length]+=i.charCodeAt(a)/1e3}let n=[[/class\s+\w+/,0],[/function\s+\w+/,1],[/async\s+|await\s+|Promise/,2],[/interface\s+\w+/,3],[/export\s+/,4],[/import\s+/,5],[/try\s*{/,6],[/\.(map|filter|reduce)\(/,7]];for(let[o,i]of n)o.test(e)&&(t[i]+=.5);let r=Math.sqrt(t.reduce((o,i)=>o+i*i,0))||1;return t.map(o=>o/r)}clearCache(){this.cache.clear()}getCacheStats(){return this.cache.getStats()}async healthCheck(){return await this.client.healthCheck()}async getServerInfo(){return await this.client.getServerInfo()}getDimensions(){return v.DIMENSIONS}getConfig(){return{model:v.MODEL,dimensions:v.DIMENSIONS,contextWindow:v.CONTEXT_WINDOW,batchSize:this.batchSize,maxRetries:v.MAX_RETRIES,enableFallback:this.enableFallback}}};V();le();var we={maxNodes:1e5,maxEdgesPerNode:500,namespace:"code-intelligence:kg",enableVectorEmbeddings:!0,embeddingDimension:384,enableLLMExtraction:!0,llmModelTier:2,llmMaxTokens:2048},me=oe.create("code-intelligence/knowledge-graph"),he=class{config;memory;nodeCache=new Map;edgeIndex=new Map;tsParser;fileReader;embedder;llmRouter;constructor(e,t={}){this.config={...we,...t},this.isKnowledgeGraphDependencies(e)?(this.memory=e.memory,this.llmRouter=e.llmRouter):(this.memory=e,this.llmRouter=void 0),this.tsParser=new F,this.fileReader=new k,this.embedder=new _({enableFallback:!0})}isKnowledgeGraphDependencies(e){return e.memory!==void 0}async index(e){let t=Date.now(),s=[],n=0,r=0;try{let{paths:o,incremental:i=!1,includeTests:a=!0,languages:c}=e;i||await this.clear();for(let d of o)try{if(c&&c.length>0){let m=this.getFileExtension(d);if(!this.matchesLanguage(m,c))continue}if(!a&&this.isTestFile(d))continue;let u=await this.indexFile(d);n+=u.nodes,r+=u.edges}catch(u){s.push({file:d,error:j(u)})}let l=Date.now()-t;return await this.storeIndexMetadata({filesIndexed:o.length-s.length,nodesCreated:n,edgesCreated:r,duration:l,indexedAt:new Date().toISOString()}),w({filesIndexed:o.length-s.length,nodesCreated:n,edgesCreated:r,duration:l,errors:s})}catch(o){return L(D(o))}}async query(e){try{let{query:t,type:s,limit:n=100}=e;return s==="cypher"?this.executeCypherQuery(t,n):this.executeNaturalLanguageQuery(t,n)}catch(t){return L(D(t))}}async mapDependencies(e){try{let{files:t,direction:s,depth:n=3}=e,r=[],o=[],i=new Set,a=[];for(let l of t)await this.traverseDependencies(l,s,n,i,r,o,[],a);let c=this.calculateDependencyMetrics(r,o);return w({nodes:r,edges:o,cycles:a,metrics:c})}catch(t){return L(D(t))}}async getNode(e){if(this.nodeCache.has(e))return this.nodeCache.get(e);let t=`${this.config.namespace}:node:${e}`,s=await this.memory.get(t);return s&&this.nodeCache.set(e,s),s}async getEdges(e,t){let s=[],n=this.edgeIndex.get(e);if(n)return this.filterEdgesByDirection(n,e,t);let r=`${this.config.namespace}:edge:*`,o=await this.memory.search(r,this.config.maxEdgesPerNode*2);for(let i of o){let a=await this.memory.get(i);a&&(t!=="outgoing"&&a.target===e||t!=="incoming"&&a.source===e)&&s.push(a)}return s}async clear(){this.nodeCache.clear(),this.edgeIndex.clear()}isLLMExtractionAvailable(){return this.config.enableLLMExtraction===!0&&this.llmRouter!==void 0}getModelForTier(e){switch(e){case 1:return"claude-3-5-haiku-20241022";case 2:return"claude-sonnet-4-20250514";case 3:return"claude-sonnet-4-20250514";case 4:return"claude-opus-4-5-20251101";default:return"claude-sonnet-4-20250514"}}async extractRelationshipsWithLLM(e,t){if(!this.llmRouter)return{semanticRelationships:[],designPatterns:[],architecturalBoundaries:[],dependencyImpacts:[]};try{let s=this.buildRelationshipExtractionPrompt(e,t),n=this.getModelForTier(this.config.llmModelTier??2),r=await this.llmRouter.chat({messages:[{role:"system",content:`You are an expert software architect analyzing code structure. Extract:
 1. Semantic relationships between code entities (inheritance, composition, dependency, collaboration)
 2. Design patterns used (Factory, Singleton, Observer, Strategy, etc.)
 3. Architectural boundaries (layers, modules, domains)

package/dist/cli/chunks/{chunk-4VUPRTVX.js → chunk-A57BEPL7.js}

@@ -1,3 +1,3 @@
-if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.9.0");process.exit(0)}
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+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.9.1");process.exit(0)}
+import{c}from"./chunk-UZZCWWIG.js";function u(r){switch(r.toUpperCase()){case"DEBUG":return 0;case"INFO":return 1;case"WARN":case"WARNING":return 2;case"ERROR":return 3;case"SILENT":case"NONE":case"OFF":return 4;default:return 1}}var f,l=c(()=>{"use strict";f={0:"DEBUG",1:"INFO",2:"WARN",3:"ERROR",4:"SILENT"}});var a,s,g,d=c(()=>{"use strict";l();a={includeTimestamp:!0,includeLevel:!0,timestampFormat:"short",prettyPrint:!1,maxContextDepth:3},s=class r{domain;level;config;inheritedContext;constructor(e,n=1,o={},t={}){this.domain=e,this.level=n,this.config={...a,...o},this.inheritedContext=t}debug(e,n){this.level<=0&&this.output(0,e,n)}info(e,n){this.level<=1&&this.output(1,e,n)}warn(e,n){this.level<=2&&this.output(2,e,n)}error(e,n,o){if(this.level<=3){let t={...o};if(n){t.errorName=n.name,t.errorMessage=n.message,n.stack&&(t.stack=n.stack);let i=n;i.cause!==void 0&&(t.cause=String(i.cause))}this.output(3,e,t)}}isEnabled(e){return this.level<=e}getDomain(){return this.domain}child(e){return new r(this.domain,this.level,this.config,{...this.inheritedContext,...e})}output(e,n,o){let t=this.format(e,n,o);switch(e){case 0:console.debug(t);break;case 1:console.info(t);break;case 2:console.warn(t);break;case 3:console.error(t);break}}format(e,n,o){let t=[];this.config.includeTimestamp&&t.push(this.formatTimestamp()),this.config.includeLevel&&t.push(this.formatLevel(e)),t.push(`[${this.domain}]`),t.push(n);let i=this.mergeContext(o);return i&&Object.keys(i).length>0&&t.push(this.formatContext(i)),t.join(" ")}formatTimestamp(){let e=new Date;if(this.config.timestampFormat==="iso")return`[${e.toISOString()}]`;let n=String(e.getHours()).padStart(2,"0"),o=String(e.getMinutes()).padStart(2,"0"),t=String(e.getSeconds()).padStart(2,"0"),i=String(e.getMilliseconds()).padStart(3,"0");return`[${n}:${o}:${t}.${i}]`}formatLevel(e){return`[${f[e].padEnd(5)}]`}mergeContext(e){if(!(!e&&Object.keys(this.inheritedContext).length===0))return{...this.inheritedContext,...e}}formatContext(e){try{return this.config.prettyPrint?`
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package/dist/cli/chunks/{chunk-N2NS2PHA.js → chunk-AFPMCMVX.js}

@@ -1,5 +1,5 @@
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-import{c as t}from"./chunk-4I2IOUS4.js";function o(e){try{return e.prepare(`
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+import{c as t}from"./chunk-UZZCWWIG.js";function o(e){try{return e.prepare(`
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package/dist/cli/chunks/{chunk-RU5WAHB7.js → chunk-AREIP4FX.js}

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+import{a as L}from"./chunk-5LDBKZ6P.js";import*as w from"fs";var R={"aqe test generate":{domain:"test-generation",action:"generateTests"},"aqe test execute":{domain:"test-execution",action:"execute"},"aqe coverage analyze":{domain:"coverage-analysis",action:"analyze"},"aqe coverage gaps":{domain:"coverage-analysis",action:"detectGaps"},"aqe quality gate":{domain:"quality-assessment",action:"evaluateGate"},"aqe quality assess":{domain:"quality-assessment",action:"analyzeQuality"},"aqe security scan":{domain:"security-compliance",action:"runSASTScan"},"aqe security audit":{domain:"security-compliance",action:"runAudit"},"aqe defect predict":{domain:"defect-intelligence",action:"predictDefects"},"aqe code index":{domain:"code-intelligence",action:"index"},"aqe code impact":{domain:"code-intelligence",action:"analyzeImpact"},"aqe contract validate":{domain:"contract-testing",action:"validateContract"},"aqe chaos test":{domain:"chaos-resilience",action:"runChaosTest"},"aqe requirements validate":{domain:"requirements-validation",action:"validateRequirements"},"aqe visual test":{domain:"visual-accessibility",action:"runVisualTest"},"aqe accessibility test":{domain:"visual-accessibility",action:"runAccessibilityTest"},"aqe learn optimize":{domain:"learning-optimization",action:"optimizeAllStrategies"}},D={daily:"0 0 * * *",weekly:"0 0 * * 0",hourly:"0 * * * *",minutely:"* * * * *"},S=1e4,x=20,M=1e4,W=["__proto__","constructor","prototype"];function v(t){return!W.includes(t)}function C(t){let n=t.split(`
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package/dist/cli/chunks/{chunk-XO6PVK2P.js → chunk-B2I7BJLL.js}

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+import{b as r,d as f}from"./chunk-JSOBRKMA.js";import{a as d}from"./chunk-UZZCWWIG.js";f();import{existsSync as i,readFileSync as a}from"node:fs";import{join as s}from"node:path";import{execSync as p}from"node:child_process";var c=null,u=0,g=6e4;function F(){c=null,u=0}function x(e){if(c&&Date.now()-u<g)return c;let n=m(e);return c=n,u=Date.now(),n}function m(e){let n=w(e);if(n)return n;let o=h(e);if(o)return o;let t=v(e);return t||{available:!1}}function w(e){let n=s(e,".claude","mcp.json");if(i(n))try{let t=r(a(n,"utf-8"));if(t.mcpServers?.ruflo||t.mcpServers?.["claude-flow"])return{available:!0,method:"mcp-config"}}catch{}let o=s(e,".claude","settings.json");if(i(o))try{let t=r(a(o,"utf-8")),l=t.mcpServers||t.mcp?.servers||{};if(l.ruflo||l["claude-flow"]||l["@anthropic/claude-flow"])return{available:!0,method:"mcp-config"}}catch{}return null}function h(e){let n=s(e,"package.json");if(!i(n))return null;try{let o=r(a(n,"utf-8")),t={...o.dependencies,...o.devDependencies};if(t.ruflo||t["@claude-flow/cli"]||t["claude-flow"])return{available:!0,method:"npm-dependency"}}catch{}return null}function v(e){for(let n of["ruflo","@claude-flow/cli"])try{return{available:!0,method:"npx-cached",version:p(`npx --no-install ${n} --version`,{encoding:"utf-8",timeout:5e3,cwd:e,stdio:["pipe","pipe","pipe"]}).trim().match(/\d+\.\d+\.\d+[\w.-]*/)?.[0]}}catch{}return null}function b(){for(let e of["ruflo","@claude-flow/cli"])try{return d.resolve(`${e}/package.json`),e}catch{}return"ruflo"}function S(){return["  Claude Flow not found \u2014 running in standalone mode.","","  Claude Flow adds optional features:","    - SONA trajectory tracking (reinforcement learning)","    - 3-tier model routing (haiku / sonnet / opus)","    - Codebase pretrain analysis","","  To install later:","    npm install -g ruflo","    claude mcp add ruflo -- npx -y ruflo@3.5.18","    aqe init --auto --with-claude-flow"].join(`
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package/dist/cli/chunks/{chunk-HY6PMO5W.js → chunk-BEHP3DEF.js}

@@ -1,5 +1,5 @@
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-import{f as x}from"./chunk-SUSEVMZT.js";import{a as I,b as H,c as C,e as S,f as L}from"./chunk-N2NS2PHA.js";import{b as T,d as P}from"./chunk-WGMPEW2T.js";import{a as f,c as O}from"./chunk-JZSDOIXA.js";L();P();var v=["function","module","test","file","class"],w=["calls","imports","tests","depends_on","covers"],E=class{ensureSchema(e){e.transaction(()=>{e.exec(I),e.exec(H),e.exec(C)})()}schemaExists(e){return S(e)}getNodeTypes(){return v}getEdgeTypes(){return w}isValidNodeType(e){return v.includes(e)}isValidEdgeType(e){return w.includes(e)}getStats(e){if(!this.schemaExists(e))return{nodeCount:0,edgeCount:0};let t=e.prepare("SELECT COUNT(*) as count FROM hypergraph_nodes").get().count,r=e.prepare("SELECT COUNT(*) as count FROM hypergraph_edges").get().count;return{nodeCount:t,edgeCount:r}}dropSchema(e){let t=e.prepare("SELECT COUNT(*) as cnt FROM hypergraph_nodes").get()?.cnt??0,r=e.prepare("SELECT COUNT(*) as cnt FROM hypergraph_edges").get()?.cnt??0;if(t>0||r>0)throw new Error(`REFUSING to drop hypergraph schema: tables contain data (${t} nodes, ${r} edges). Backup and manually drop if needed.`);e.transaction(()=>{e.exec("DROP TABLE IF EXISTS hypergraph_edges"),e.exec("DROP TABLE IF EXISTS hypergraph_nodes")})()}};function N(n){return{id:n.id,type:n.type,name:n.name,file_path:n.filePath??null,line_start:n.lineStart??null,line_end:n.lineEnd??null,complexity:n.complexity??null,coverage:n.coverage??null,metadata:n.metadata?JSON.stringify(n.metadata):null,embedding:n.embedding?M(n.embedding):null}}function l(n){return{id:n.id,type:n.type,name:n.name,filePath:n.file_path??void 0,lineStart:n.line_start??void 0,lineEnd:n.line_end??void 0,complexity:n.complexity??void 0,coverage:n.coverage??void 0,metadata:n.metadata?T(n.metadata):void 0,embedding:n.embedding?F(n.embedding):void 0,createdAt:n.created_at,updatedAt:n.updated_at}}function A(n){return{id:n.id,source_id:n.sourceId,target_id:n.targetId,type:n.type,weight:n.weight??1,properties:n.properties?JSON.stringify(n.properties):null}}function b(n){return{id:n.id,sourceId:n.source_id,targetId:n.target_id,type:n.type,weight:n.weight,properties:n.properties?T(n.properties):void 0,createdAt:n.created_at}}function _(n,e,t){return`${n}--${t}-->${e}`}function M(n){let e=Buffer.alloc(n.length*4);for(let t=0;t<n.length;t++)e.writeFloatLE(n[t],t*4);return e}function F(n){let e=[],t=n.length/4;for(let r=0;r<t;r++)e.push(n.readFloatLE(r*4));return e}O();var z={maxTraversalDepth:10,maxQueryResults:1e3,enableVectorSearch:!1},y=class{config;schemaManager;initialized=!1;constructor(e){this.config={...z,...e},this.schemaManager=new E}async initialize(){this.initialized||(this.schemaManager.ensureSchema(this.config.db),this.initialized=!0)}isInitialized(){return this.initialized}async addNode(e){this.ensureInitialized();let t=x(),r={id:t,...e},i=N(r);return this.config.db.prepare(`
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package/dist/cli/chunks/{chunk-YPFOCNOE.js → chunk-C24ZDUCM.js}

@@ -1,4 +1,4 @@
-if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.9.0");process.exit(0)}
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.9.1");process.exit(0)}
 var i={domain:"test-generation",bestPractices:["Follow Arrange-Act-Assert (AAA) pattern for clear test structure","One logical assertion per test - test one behavior at a time","Use descriptive test names: should_returnValue_when_condition","Mock external dependencies to isolate unit under test","Test edge cases and boundary conditions, not just happy paths","Keep tests deterministic - avoid time-dependent assertions","Use test data builders or factories for complex objects","Prefer integration tests for workflows, unit tests for logic","Maintain test independence - no shared mutable state between tests","Write failing test first (TDD Red) before implementation"],antiPatterns:[{name:"God Test",description:"A single test that verifies too many behaviors",reason:"Hard to diagnose failures, brittle, slow to run",alternative:"Split into focused tests, each verifying one behavior",detection:"expect.*expect.*expect.*expect.*expect"},{name:"Mystery Guest",description:"Test relies on external data files or state not visible in test",reason:"Tests are hard to understand and maintain",alternative:"Make test data explicit within the test or use fixtures"},{name:"Eager Test",description:"Test that verifies more than needed for the current behavior",reason:"Creates unnecessary coupling, breaks easily",alternative:"Only assert what is necessary for this specific test case"},{name:"Flaky Assertion",description:"Assertions that depend on timing, order, or external state",reason:"Creates unreliable test suite, erodes trust",alternative:"Use deterministic assertions, mock time/random",detection:"setTimeout|Date\\.now|Math\\.random"},{name:"Test Code Duplication",description:"Same setup or assertion code repeated across tests",reason:"Maintenance burden, inconsistency risk",alternative:"Extract to beforeEach, helpers, or fixtures"}],frameworkGuidance:{jest:["Use describe blocks to group related tests","Prefer toEqual for deep equality, toBe for primitives","Use jest.mock() at module level for consistent mocking","Use jest.spyOn for partial mocking of objects","Enable --coverage to track test coverage"],vitest:["Use vi.mock() for module mocking","Prefer vi.fn() over jest.fn() syntax","Use vitest/ui for interactive test debugging","Enable browser mode for component tests","Use inline snapshots for small expected values"],mocha:["Use beforeEach/afterEach for setup/teardown","Combine with chai for assertions","Use sinon for spies, stubs, and mocks","Set appropriate timeouts for async tests"],pytest:["Use fixtures for reusable test setup","Use parametrize for data-driven tests","Use conftest.py for shared fixtures","Use pytest.raises for exception testing","Use pytest-cov for coverage reporting"],junit:["Use @BeforeEach and @AfterEach for setup/teardown","Use @DisplayName for readable test names","Use @ParameterizedTest for data-driven tests","Use Mockito for mocking dependencies"],testng:["Use @BeforeMethod and @AfterMethod appropriately","Use @DataProvider for parameterized tests","Configure test groups for selective execution"],playwright:["Use page.locator() for resilient element selection","Use expect(locator) for auto-waiting assertions","Use page.waitForLoadState for navigation","Use test.describe for grouping tests","Use fixtures for reusable browser contexts"],cypress:["Use cy.intercept() for API mocking","Avoid conditional testing - use deterministic state","Use data-cy attributes for stable selectors","Use cy.within() for scoped queries","Prefer cy.contains() for text-based selection"],selenium:["Use explicit waits over implicit waits","Use Page Object Model for maintainability","Handle stale element references with retry logic","Clean up browser state between tests"]},languageGuidance:{typescript:["Use type assertions in tests for better IDE support","Create typed test fixtures and builders","Use satisfies operator for test data validation","Mock types with ts-mockito or typed mocking libs"],javascript:["Use JSDoc comments for test documentation","Consider TypeScript for larger test suites","Use ESLint with testing plugins"],python:["Use type hints in test functions","Use dataclasses for test data","Follow PEP 8 naming: test_should_do_something"],java:["Use AssertJ for fluent assertions","Use Lombok for test data classes","Follow naming: shouldDoSomething_whenCondition"],go:["Use table-driven tests for multiple cases","Use testify for assertions and mocking","Place tests in _test.go files"],rust:["Use #[test] attribute for test functions","Use assert!, assert_eq!, assert_ne! macros","Place unit tests in same file with #[cfg(test)]"],csharp:["Use xUnit or NUnit for testing","Use FluentAssertions for readable assertions","Use Moq for mocking interfaces"],kotlin:["Use kotest for BDD-style testing","Use MockK for Kotlin-first mocking","Use data classes for test fixtures"]},examples:[{title:"Unit Test Template (TypeScript + Vitest)",description:"Standard AAA pattern for unit tests",content:`describe('UserService', () => {
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package/dist/cli/chunks/{chunk-CL6POIX4.js → chunk-D4PSFWND.js}

@@ -1,2 +1,2 @@
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+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.9.1");process.exit(0)}
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package/dist/cli/chunks/{chunk-YR6ZZGH7.js → chunk-D55PSO5D.js}

@@ -1,4 +1,4 @@
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package/dist/cli/chunks/{chunk-4YS3IJ45.js → chunk-DC3HPOOJ.js}

@@ -1,2 +1,2 @@
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